Difference between revisions of "OXALODECARB-RXN"

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(Created page with "Category:reaction == Reaction RXN0-5515 == * ec-number: ** [http://enzyme.expasy.org/EC/2.7.7.41 ec-2.7.7.41] * direction: ** left-to-right * common-name: ** hypothetical...")
(Created page with "Category:reaction == Reaction OXALODECARB-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/4.1.1.112 ec-4.1.1.112] * direction: ** left-to-right == Reaction formula ==...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN0-5515 ==
+
== Reaction OXALODECARB-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.7.41 ec-2.7.7.41]
+
** [http://enzyme.expasy.org/EC/4.1.1.112 ec-4.1.1.112]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** hypothetical protein
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-3-4-Saturated-L-Phosphatidates]][c] '''+''' 1 [[CTP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CDP-2-3-4-Saturated-Diacylglycerols]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[OXALACETIC_ACID]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[PYRUVATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FISUC_RS09230]]
+
* Gene: [[FSU_RS09880]]
−
** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
−
* Gene: [[FSU_RS11170]]
+
* Gene: [[FSU_RS09935]]
−
** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[METHYLGALLATE-DEGRADATION-PWY]], methylgallate degradation:
 +
** '''1''' reactions found over '''6''' reactions in the full pathway
 +
* [[P184-PWY]], protocatechuate degradation I (meta-cleavage pathway):
 +
** '''1''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-6339]], syringate degradation:
 +
** '''1''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
−
* category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: ec-number=ec-2.7.7.41}}
+
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15642 15642]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00217 R00217]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P13187 P13187]
 +
** [http://www.uniprot.org/uniprot/P13155 P13155]
 +
** [http://www.uniprot.org/uniprot/P13156 P13156]
 +
** [http://www.uniprot.org/uniprot/Q58628 Q58628]
 +
{{#set: ec-number=ec-4.1.1.112}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=hypothetical protein}}
 
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=orthofinder}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=fibrobacter_succinogenes2|fibrobacter_succinogenes1}}
+
{{#set: reconstruction source=ecoli|faecalibacterium|bthetaiotaomicron}}

Latest revision as of 11:15, 17 October 2022

Reaction OXALODECARB-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • METHYLGALLATE-DEGRADATION-PWY, methylgallate degradation:
    • 1 reactions found over 6 reactions in the full pathway
  • P184-PWY, protocatechuate degradation I (meta-cleavage pathway):
    • 1 reactions found over 8 reactions in the full pathway
  • PWY-6339, syringate degradation:
    • 1 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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