Difference between revisions of "OHMETPYRKIN-RXN"

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(Created page with "Category:reaction == Reaction RXN-5841 == * ec-number: ** [http://enzyme.expasy.org/EC/3.1.3.5 ec-3.1.3.5] * direction: ** left-to-right * common-name: ** 5'/3'-nucleotida...")
(Created page with "Category:reaction == Reaction OHMETPYRKIN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.7.1.49 ec-2.7.1.49] * direction: ** left-to-right * common-name: ** hydroxy...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-5841 ==
+
== Reaction OHMETPYRKIN-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.1.3.5 ec-3.1.3.5]
+
** [http://enzyme.expasy.org/EC/2.7.1.49 ec-2.7.1.49]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** 5'/3'-nucleotidase sure
+
** hydroxymethylpyrimidine/phosphomethylpyrimidine kinase
−
** bifunctional metallophosphatase/5'-nucleotidase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[NICOTINAMIDE_NUCLEOTIDE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[NICOTINAMIDE_RIBOSE]][c] '''+''' 1 [[Pi]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[HMP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[AMINO-HYDROXYMETHYL-METHYL-PYR-P]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS00535]]
+
* Gene: [[FSU_RS08635]]
 +
** Category: [[orthology]]
 +
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
* Gene: [[FSU_RS01955]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
−
* Gene: [[FSU_RS03695]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
−
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
−
* Gene: [[FISUC_RS01815]]
+
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
−
** Category: [[annotation]]
+
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
−
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
−
* Gene: [[FISUC_RS14345]]
+
* Gene: [[FISUC_RS00085]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5381]], pyridine nucleotide cycling (plants):
+
* [[PWY-6910]], hydroxymethylpyrimidine salvage:
−
** '''4''' reactions found over '''11''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
* [[NAD-BIOSYNTHESIS-II]], NAD salvage pathway III (to nicotinamide riboside):
+
* [[PWY-7357]], thiamine formation from pyrithiamine and oxythiamine (yeast):
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''3''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7356]], thiamine salvage IV (yeast):
 +
** '''3''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30816 30816]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23097 23097]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02323 R02323]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03471 R03471]
−
{{#set: ec-number=ec-3.1.3.5}}
+
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/O48881 O48881]
 +
{{#set: ec-number=ec-2.7.1.49}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=5'/3'-nucleotidase sure|bifunctional metallophosphatase/5'-nucleotidase}}
+
{{#set: common-name=hydroxymethylpyrimidine/phosphomethylpyrimidine kinase}}
−
{{#set: nb gene associated=4}}
+
{{#set: nb gene associated=3}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=fibrobacter_succinogenes2|fibrobacter_succinogenes1}}
+
{{#set: reconstruction source=ecoli|plantarum|bifidobacterium|bthetaiotaomicron|fibrobacter_succinogenes2|faecalibacterium|fibrobacter_succinogenes1}}

Latest revision as of 11:15, 17 October 2022

Reaction OHMETPYRKIN-RXN

  • ec-number:
  • direction:
    • left-to-right
  • common-name:
    • hydroxymethylpyrimidine/phosphomethylpyrimidine kinase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6910, hydroxymethylpyrimidine salvage:
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-7357, thiamine formation from pyrithiamine and oxythiamine (yeast):
    • 3 reactions found over 6 reactions in the full pathway
  • PWY-7356, thiamine salvage IV (yeast):
    • 3 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





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