Difference between revisions of "DGDPKIN-RXN"

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(Created page with "Category:reaction == Reaction RXN-14385 == * ec-number: ** [http://enzyme.expasy.org/EC/2.8.1.7 ec-2.8.1.7] * direction: ** left-to-right * common-name: ** cysteine desulf...")
(Created page with "Category:reaction == Reaction DGDPKIN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.7.4.6 ec-2.7.4.6] * direction: ** left-to-right * common-name: ** nucleoside-di...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-14385 ==
+
== Reaction DGDPKIN-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.8.1.7 ec-2.8.1.7]
+
** [http://enzyme.expasy.org/EC/2.7.4.6 ec-2.7.4.6]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** cysteine desulfurase
+
** nucleoside-diphosphate kinase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CD-S-SP-Complex]][c] '''+''' 1 [[CYS]][c] '''=>''' 1 [[L-ALPHA-ALANINE]][c] '''+''' 1 [[S-CD-S-SP-Complex]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[DGDP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[DGTP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FISUC_RS05270]]
+
* Gene: [[FISUC_RS12530]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
+
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[FISUC_RS02220]]
+
* Gene: [[FSU_RS14500]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
+
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[FSU_RS07165]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
−
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
+
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
−
* Gene: [[FSU_RS04105]]
+
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
−
** Category: [[annotation]]
+
* Gene: [[FSU_RS15240]]
−
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
+
** Category: [[orthology]]
 +
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7250]], [2Fe-2S] iron-sulfur cluster biosynthesis:
+
* [[PWY-7224]], purine deoxyribonucleosides salvage:
−
** '''4''' reactions found over '''10''' reactions in the full pathway
+
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7226]], guanosine deoxyribonucleotides de novo biosynthesis I:
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7222]], guanosine deoxyribonucleotides de novo biosynthesis II:
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: ec-number=ec-2.8.1.7}}
+
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27691 27691]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R01857 R01857]
 +
{{#set: ec-number=ec-2.7.4.6}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=cysteine desulfurase}}
+
{{#set: common-name=nucleoside-diphosphate kinase}}
−
{{#set: nb gene associated=4}}
+
{{#set: nb gene associated=3}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=fibrobacter_succinogenes2|fibrobacter_succinogenes1}}
+
{{#set: reconstruction source=ecoli|plantarum|bthetaiotaomicron|fibrobacter_succinogenes2|fibrobacter_succinogenes1}}

Latest revision as of 11:15, 17 October 2022

Reaction DGDPKIN-RXN

  • ec-number:
  • direction:
    • left-to-right
  • common-name:
    • nucleoside-diphosphate kinase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7224, purine deoxyribonucleosides salvage:
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-7226, guanosine deoxyribonucleotides de novo biosynthesis I:
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7222, guanosine deoxyribonucleotides de novo biosynthesis II:
    • 2 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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