Difference between revisions of "RXN-16380"
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(Created page with "Category:reaction == Reaction RXN0-6427 == * ec-number: ** [http://enzyme.expasy.org/EC/3.1.7.2 ec-3.1.7.2] * direction: ** left-to-right == Reaction formula == * 1 GDP-...") |
(Created page with "Category:reaction == Reaction RXN-16380 == * ec-number: ** [http://enzyme.expasy.org/EC/6.2.1.3 ec-6.2.1.3] * direction: ** left-to-right * common-name: ** long-chain fatt...") |
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| Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
| − | == Reaction | + | == Reaction RXN-16380 == |
* ec-number: | * ec-number: | ||
| − | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/6.2.1.3 ec-6.2.1.3] |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
| + | * common-name: | ||
| + | ** long-chain fatty acid--coa ligase | ||
== Reaction formula == | == Reaction formula == | ||
| − | * 1 [[ | + | * 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[STEARIC_ACID]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[STEAROYL-COA]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
| − | * Gene: [[ | + | * Gene: [[FISUC_RS12045]] |
| + | ** Category: [[annotation]] | ||
| + | *** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a | ||
| + | * Gene: [[FSU_RS14015]] | ||
| + | ** Category: [[annotation]] | ||
| + | *** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
| − | *** Source: [[ | + | *** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a |
| + | *** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
| − | * [[ | + | * [[PWY-5989]], stearate biosynthesis II (bacteria and plants): |
| − | ** ''' | + | ** '''4''' reactions found over '''6''' reactions in the full pathway |
== Reconstruction information == | == Reconstruction information == | ||
| − | * category: [[orthology]]; source: [[ | + | * category: [[annotation]]; source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a |
| + | * category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a | ||
| + | * category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a | ||
| + | * category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
| − | + | {{#set: ec-number=ec-6.2.1.3}} | |
| − | |||
| − | {{#set: ec-number=ec- | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
| − | {{#set: nb gene associated= | + | {{#set: common-name=long-chain fatty acid--coa ligase}} |
| + | {{#set: nb gene associated=2}} | ||
{{#set: nb pathway associated=1}} | {{#set: nb pathway associated=1}} | ||
| − | {{#set: reconstruction category=orthology}} | + | {{#set: reconstruction category=orthology|annotation}} |
| − | {{#set: reconstruction tool=orthofinder}} | + | {{#set: reconstruction tool=orthofinder|pathwaytools}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
| − | {{#set: reconstruction source= | + | {{#set: reconstruction source=fibrobacter_succinogenes2|faecalibacterium|fibrobacter_succinogenes1|bthetaiotaomicron}} |
Latest revision as of 11:16, 17 October 2022
Contents
Reaction RXN-16380
- ec-number:
- direction:
- left-to-right
- common-name:
- long-chain fatty acid--coa ligase
Reaction formula
- 1 ATP[c] + 1 CO-A[c] + 1 STEARIC_ACID[c] => 1 AMP[c] + 1 PPI[c] + 1 STEAROYL-COA[c]
Gene(s) associated with this reaction
- Gene: FISUC_RS12045
- Category: annotation
- Source: fibrobacter_succinogenes2, Tool: pathwaytools, Assignment: automated-name-match, Comment: n.a
- Category: annotation
- Gene: FSU_RS14015
- Category: annotation
- Source: fibrobacter_succinogenes1, Tool: pathwaytools, Assignment: automated-name-match, Comment: n.a
- Category: orthology
- Source: faecalibacterium, Tool: orthofinder, Assignment: n.a, Comment: n.a
- Source: bthetaiotaomicron, Tool: orthofinder, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-5989, stearate biosynthesis II (bacteria and plants):
- 4 reactions found over 6 reactions in the full pathway
Reconstruction information
- category: annotation; source: fibrobacter_succinogenes2; tool: pathwaytools; comment: n.a
- category: orthology; source: faecalibacterium; tool: orthofinder; comment: n.a
- category: orthology; source: bthetaiotaomicron; tool: orthofinder; comment: n.a
- category: annotation; source: fibrobacter_succinogenes1; tool: pathwaytools; comment: n.a
