Difference between revisions of "1.6.99.5-RXN"

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(Created page with "Category:reaction == Reaction 3.4.11.1-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/3.4.11.9 ec-3.4.11.9] ** [http://enzyme.expasy.org/EC/3.4.11.1 ec-3.4.11.1] * di...")
(Created page with "Category:reaction == Reaction 1.6.99.5-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/1.6.5.11 ec-1.6.5.11] * direction: ** reversible * common-name: ** nadh-quinone...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 3.4.11.1-RXN ==
+
== Reaction 1.6.99.5-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.4.11.9 ec-3.4.11.9]
+
** [http://enzyme.expasy.org/EC/1.6.5.11 ec-1.6.5.11]
−
** [http://enzyme.expasy.org/EC/3.4.11.1 ec-3.4.11.1]
 
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 +
* common-name:
 +
** nadh-quinone oxidoreductase subunit d
 +
** nadh-quinone oxidoreductase subunit nuok
 +
** hypothetical protein
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Protein-With-N-Terminal-X-Pro]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Amino-Acids-20]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Protein-With-N-Terminal-Pro]][c]
+
* 1 [[ETR-Quinones]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[ETR-Quinols]][c] '''+''' 1 [[NAD]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS00245]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** Category: [[manual]]
+
* Gene: [[FSU_RS13735]]
−
*** Source: [[add_expert_reactions]], Tool: [[unknown-tool]], Assignment: n.a, Comment: added to improve flux in sugars
+
** Category: [[annotation]]
−
* Gene: [[FSU_RS01180]]
+
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[manual]]
+
* Gene: [[FSU_RS13755]]
−
*** Source: [[add_expert_reactions]], Tool: [[unknown-tool]], Assignment: n.a, Comment: added to improve flux in sugars
+
** Category: [[annotation]]
 +
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[FSU_RS12650]]
 +
** Category: [[annotation]]
 +
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[FSU_RS12685]]
 +
** Category: [[annotation]]
 +
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[FSU_RS12680]]
 +
** Category: [[annotation]]
 +
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[FISUC_RS11785]]
 +
** Category: [[annotation]]
 +
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[FISUC_RS10725]]
 +
** Category: [[annotation]]
 +
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[FISUC_RS10720]]
 +
** Category: [[annotation]]
 +
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[FISUC_RS10690]]
 +
** Category: [[annotation]]
 +
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[FISUC_RS11765]]
 +
** Category: [[annotation]]
 +
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[add_expert_reactions]]; tool: [[curation]]; comment: present in the annotation part in the first version of the fibrobacter gem
+
* category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[annotation]]; source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* UNIPROT:
+
* RHEA:
−
** [http://www.uniprot.org/uniprot/P27888 P27888]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11356 11356]
−
** [http://www.uniprot.org/uniprot/P00727 P00727]
+
* LIGAND-RXN:
−
** [http://www.uniprot.org/uniprot/P68767 P68767]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00281 R00281]
−
** [http://www.uniprot.org/uniprot/P45334 P45334]
+
{{#set: ec-number=ec-1.6.5.11}}
−
** [http://www.uniprot.org/uniprot/Q9JTI8 Q9JTI8]
+
{{#set: direction=reversible}}
−
** [http://www.uniprot.org/uniprot/Q9PP04 Q9PP04]
+
{{#set: common-name=hypothetical protein|nadh-quinone oxidoreductase subunit nuok|nadh-quinone oxidoreductase subunit d}}
−
** [http://www.uniprot.org/uniprot/P24828 P24828]
+
{{#set: nb gene associated=10}}
−
** [http://www.uniprot.org/uniprot/P23341 P23341]
 
−
** [http://www.uniprot.org/uniprot/P28839 P28839]
 
−
** [http://www.uniprot.org/uniprot/P30184 P30184]
 
−
** [http://www.uniprot.org/uniprot/P31427 P31427]
 
−
** [http://www.uniprot.org/uniprot/Q42876 Q42876]
 
−
** [http://www.uniprot.org/uniprot/Q48531 Q48531]
 
−
** [http://www.uniprot.org/uniprot/O24022 O24022]
 
−
** [http://www.uniprot.org/uniprot/Q10712 Q10712]
 
−
** [http://www.uniprot.org/uniprot/Q43034 Q43034]
 
−
{{#set: ec-number=ec-3.4.11.1|ec-3.4.11.9}}
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: nb gene associated=2}}
 
 
{{#set: nb pathway associated=0}}
 
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=manual}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=curation}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction comment=present in the annotation part in the first version of the fibrobacter gem}}
+
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=add_expert_reactions}}
+
{{#set: reconstruction source=fibrobacter_succinogenes2|fibrobacter_succinogenes1}}

Latest revision as of 11:16, 17 October 2022

Reaction 1.6.99.5-RXN

  • ec-number:
  • direction:
    • reversible
  • common-name:
    • nadh-quinone oxidoreductase subunit d
    • nadh-quinone oxidoreductase subunit nuok
    • hypothetical protein

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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