Difference between revisions of "RXN-12610"

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(Created page with "Category:reaction == Reaction SERINE-O-ACETTRAN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1.30 ec-2.3.1.30] * direction: ** left-to-right * common-name: ** s...")
(Created page with "Category:reaction == Reaction RXN-12610 == * ec-number: ** [http://enzyme.expasy.org/EC/2.5.1.3 ec-2.5.1.3] * direction: ** left-to-right * common-name: ** thiamine phosph...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction SERINE-O-ACETTRAN-RXN ==
+
== Reaction RXN-12610 ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.1.30 ec-2.3.1.30]
+
** [http://enzyme.expasy.org/EC/2.5.1.3 ec-2.5.1.3]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** serine o-acetyltransferase
+
** thiamine phosphate synthase
−
** serine acetyltransferase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ACETYL-COA]][c] '''+''' 1 [[SER]][c] '''=>''' 1 [[ACETYLSERINE]][c] '''+''' 1 [[CO-A]][c]
+
* 1 [[AMINO-HYDROXYMETHYL-METHYLPYRIMIDINE-PP]][c] '''+''' 1 [[CPD-13576]][c] '''+''' 2 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[THIAMINE-P]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FISUC_RS00880]]
+
* Gene: [[FSU_RS00840]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
+
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[FISUC_RS02100]]
+
* Gene: [[FISUC_RS14650]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[FSU_RS02760]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[FSU_RS03980]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6936]], seleno-amino acid biosynthesis (plants):
+
* [[PWY-6893]], thiamine diphosphate biosynthesis II (Bacillus):
−
** '''3''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7870]], L-cysteine biosynthesis VII (from S-sulfo-L-cysteine):
 
−
** '''1''' reactions found over '''4''' reactions in the full pathway
 
−
* [[CYSTSYN-PWY]], L-cysteine biosynthesis I:
 
 
** '''2''' reactions found over '''2''' reactions in the full pathway
 
** '''2''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-7274]], D-cycloserine biosynthesis:
+
* [[PWY-6907]], thiamine diphosphate biosynthesis III (Staphylococcus):
−
** '''1''' reactions found over '''6''' reactions in the full pathway
+
** '''1''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
+
* category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24560 24560]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=47849 47849]
−
* LIGAND-RXN:
+
{{#set: ec-number=ec-2.5.1.3}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00586 R00586]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q39533 Q39533]
 
−
** [http://www.uniprot.org/uniprot/Q06750 Q06750]
 
−
** [http://www.uniprot.org/uniprot/P71405 P71405]
 
−
** [http://www.uniprot.org/uniprot/Q9JR86 Q9JR86]
 
−
** [http://www.uniprot.org/uniprot/Q9PPF6 Q9PPF6]
 
−
** [http://www.uniprot.org/uniprot/P23145 P23145]
 
−
** [http://www.uniprot.org/uniprot/Q9CEI8 Q9CEI8]
 
−
** [http://www.uniprot.org/uniprot/P43886 P43886]
 
−
** [http://www.uniprot.org/uniprot/P32003 P32003]
 
−
** [http://www.uniprot.org/uniprot/P29847 P29847]
 
−
** [http://www.uniprot.org/uniprot/Q42588 Q42588]
 
−
** [http://www.uniprot.org/uniprot/Q39218 Q39218]
 
−
** [http://www.uniprot.org/uniprot/Q42538 Q42538]
 
−
** [http://www.uniprot.org/uniprot/P74089 P74089]
 
−
** [http://www.uniprot.org/uniprot/Q8W2B8 Q8W2B8]
 
−
** [http://www.uniprot.org/uniprot/Q8S895 Q8S895]
 
−
** [http://www.uniprot.org/uniprot/P93544 P93544]
 
−
** [http://www.uniprot.org/uniprot/O69218 O69218]
 
−
** [http://www.uniprot.org/uniprot/O32979 O32979]
 
−
** [http://www.uniprot.org/uniprot/P0A9D4 P0A9D4]
 
−
</div>
 
−
{{#set: ec-number=ec-2.3.1.30}}
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=serine o-acetyltransferase|serine acetyltransferase}}
+
{{#set: common-name=thiamine phosphate synthase}}
−
{{#set: nb gene associated=4}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=orthofinder|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=ecoli|plantarum|fibrobacter_succinogenes2|faecalibacterium|fibrobacter_succinogenes1}}
+
{{#set: reconstruction source=fibrobacter_succinogenes2|fibrobacter_succinogenes1}}

Latest revision as of 11:16, 17 October 2022

Reaction RXN-12610

  • ec-number:
  • direction:
    • left-to-right
  • common-name:
    • thiamine phosphate synthase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6893, thiamine diphosphate biosynthesis II (Bacillus):
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6907, thiamine diphosphate biosynthesis III (Staphylococcus):
    • 1 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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