Difference between revisions of "UROGENDECARBOX-RXN"

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(Created page with "Category:reaction == Reaction ExchangeSeed-CPD-7076 == * direction: ** reversible == Reaction formula == * 1.0 CPD-7076[C-BOUNDARY] '''<=>''' 1.0 CPD-7076[e] == Ge...")
(Created page with "Category:reaction == Reaction UROGENDECARBOX-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/4.1.1.37 ec-4.1.1.37] * direction: ** left-to-right == Reaction formula ==...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
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== Reaction ExchangeSeed-CPD-7076 ==
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== Reaction UROGENDECARBOX-RXN ==
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/4.1.1.37 ec-4.1.1.37]
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
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* 1.0 [[CPD-7076]][C-BOUNDARY] '''<=>''' 1.0 [[CPD-7076]][e]
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* 4 [[PROTON]][c] '''+''' 1 [[UROPORPHYRINOGEN-III]][c] '''=>''' 4 [[CARBON-DIOXIDE]][c] '''+''' 1 [[COPROPORPHYRINOGEN_III]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[HEME-BIOSYNTHESIS-II]], heme b biosynthesis I (aerobic):
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[HEMESYN2-PWY]], heme b biosynthesis II (anaerobic):
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5531]], 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic):
 +
** '''3''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7766]], heme b biosynthesis IV (Gram-positive bacteria):
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent):
 +
** '''1''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY0-1415]], superpathway of heme b biosynthesis from uroporphyrinogen-III:
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent):
 +
** '''1''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from boundary to extracellular compartment
+
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_spontaneous]]; tool: [[meneco]]; comment: added for gapfilling
 
== External links  ==
 
== External links  ==
−
{{#set: direction=reversible}}
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* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19866 19866]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R03197 R03197]
 +
* UNIPROT:
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** [http://www.uniprot.org/uniprot/P06132 P06132]
 +
** [http://www.uniprot.org/uniprot/P16891 P16891]
 +
** [http://www.uniprot.org/uniprot/P32395 P32395]
 +
** [http://www.uniprot.org/uniprot/Q9PN54 Q9PN54]
 +
** [http://www.uniprot.org/uniprot/Q9JV52 Q9JV52]
 +
** [http://www.uniprot.org/uniprot/P29680 P29680]
 +
** [http://www.uniprot.org/uniprot/P32347 P32347]
 +
** [http://www.uniprot.org/uniprot/P32920 P32920]
 +
** [http://www.uniprot.org/uniprot/P54224 P54224]
 +
** [http://www.uniprot.org/uniprot/O81220 O81220]
 +
** [http://www.uniprot.org/uniprot/P70697 P70697]
 +
{{#set: ec-number=ec-4.1.1.37}}
 +
{{#set: direction=left-to-right}}
 
{{#set: nb gene associated=0}}
 
{{#set: nb gene associated=0}}
−
{{#set: nb pathway associated=0}}
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{{#set: nb pathway associated=7}}
−
{{#set: reconstruction category=manual}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: reconstruction tool=curation}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: reconstruction comment=added to manage seeds from boundary to extracellular compartment}}
+
{{#set: reconstruction comment=added for gapfilling}}
−
{{#set: reconstruction source=import_from_medium}}
+
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_spontaneous}}

Latest revision as of 11:16, 17 October 2022

Reaction UROGENDECARBOX-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • HEME-BIOSYNTHESIS-II, heme b biosynthesis I (aerobic):
    • 2 reactions found over 4 reactions in the full pathway
  • HEMESYN2-PWY, heme b biosynthesis II (anaerobic):
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-5531, 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic):
    • 3 reactions found over 9 reactions in the full pathway
  • PWY-7766, heme b biosynthesis IV (Gram-positive bacteria):
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-7159, 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent):
    • 1 reactions found over 9 reactions in the full pathway
  • PWY0-1415, superpathway of heme b biosynthesis from uroporphyrinogen-III:
    • 3 reactions found over 4 reactions in the full pathway
  • CHLOROPHYLL-SYN, 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent):
    • 1 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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