Difference between revisions of "TRANS-RXN-30"

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(Created page with "Category:reaction == Reaction PYRUVATEORTHOPHOSPHATE-DIKINASE-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.7.9.1 ec-2.7.9.1] * direction: ** reversible == Reactio...")
(Created page with "Category:reaction == Reaction TRANS-RXN-30 == * common-name: ** xylose:proton symport * direction: ** reversible == Reaction formula == * 1 D-Xylose[e] '''+''' 1 PRO...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
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== Reaction PYRUVATEORTHOPHOSPHATE-DIKINASE-RXN ==
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== Reaction TRANS-RXN-30 ==
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* ec-number:
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* common-name:
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** [http://enzyme.expasy.org/EC/2.7.9.1 ec-2.7.9.1]
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** xylose:proton symport
 
* direction:
 
* direction:
 
** reversible
 
** reversible
 
== Reaction formula ==
 
== Reaction formula ==
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* 1 [[ATP]][c] '''+''' 1 [[PYRUVATE]][c] '''+''' 1 [[Pi]][c] '''<=>''' 1 [[AMP]][c] '''+''' 1 [[PHOSPHO-ENOL-PYRUVATE]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c]
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* 1 [[D-Xylose]][e] '''+''' 1 [[PROTON]][e] '''<=>''' 1 [[D-Xylose]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
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* Gene: [[FSU_RS06890]]
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* Gene: [[FSU_RS10945]]
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** Category: [[manual]]
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** Category: [[orthology]]
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*** Source: [[add_expert_reactions]], Tool: [[unknown-tool]], Assignment: n.a, Comment: added to improve flux in sugars
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* Gene: [[FISUC_RS09005]]
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** Category: [[orthology]]
 +
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
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* [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type:
 
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** '''7''' reactions found over '''10''' reactions in the full pathway
 
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* [[PWY-7117]], C4 photosynthetic carbon assimilation cycle, PEPCK type:
 
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** '''7''' reactions found over '''12''' reactions in the full pathway
 
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* [[PWY-241]], C4 photosynthetic carbon assimilation cycle, NADP-ME type:
 
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** '''4''' reactions found over '''6''' reactions in the full pathway
 
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* [[PWY-6549]], L-glutamine biosynthesis III:
 
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** '''8''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
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* category: [[manual]]; source: [[add_expert_reactions]]; tool: [[curation]]; comment: present in the orthology part in the first version of the fibrobacter gem
+
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
== External links  ==
 
== External links  ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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{{#set: common-name=xylose:proton symport}}
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10756 10756]
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R00206 R00206]
 
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* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/Q7M0I6 Q7M0I6]
 
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** [http://www.uniprot.org/uniprot/O23404 O23404]
 
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** [http://www.uniprot.org/uniprot/Q9WYA9 Q9WYA9]
 
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** [http://www.uniprot.org/uniprot/P22983 P22983]
 
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** [http://www.uniprot.org/uniprot/Q41846 Q41846]
 
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** [http://www.uniprot.org/uniprot/Q42367 Q42367]
 
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** [http://www.uniprot.org/uniprot/Q42368 Q42368]
 
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** [http://www.uniprot.org/uniprot/P22221 P22221]
 
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** [http://www.uniprot.org/uniprot/P37213 P37213]
 
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** [http://www.uniprot.org/uniprot/Q42736 Q42736]
 
−
** [http://www.uniprot.org/uniprot/Q42910 Q42910]
 
−
** [http://www.uniprot.org/uniprot/Q39734 Q39734]
 
−
** [http://www.uniprot.org/uniprot/Q39735 Q39735]
 
−
** [http://www.uniprot.org/uniprot/O24612 O24612]
 
−
** [http://www.uniprot.org/uniprot/O85840 O85840]
 
−
</div>
 
−
{{#set: ec-number=ec-2.7.9.1}}
 
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
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{{#set: nb gene associated=1}}
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{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=4}}
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{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=manual}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction tool=curation}}
+
{{#set: reconstruction tool=orthofinder}}
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{{#set: reconstruction comment=present in the orthology part in the first version of the fibrobacter gem}}
+
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=add_expert_reactions}}
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{{#set: reconstruction source=ecoli|bthetaiotaomicron}}

Latest revision as of 11:16, 17 October 2022

Reaction TRANS-RXN-30

  • common-name:
    • xylose:proton symport
  • direction:
    • reversible

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=TRANS-RXN-30&oldid=92356"