Difference between revisions of "PROTOHEMEFERROCHELAT-RXN"

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(Created page with "Category:reaction == Reaction TransportSeed-5-AMINOPENTANOATE == * direction: ** left-to-right == Reaction formula == * 1.0 5-AMINOPENTANOATE[e] '''=>''' 1.0 5-AMINO...")
(Created page with "Category:reaction == Reaction PROTOHEMEFERROCHELAT-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/4.99.1.1 ec-4.99.1.1] * direction: ** reversible == Reaction formula...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction TransportSeed-5-AMINOPENTANOATE ==
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== Reaction PROTOHEMEFERROCHELAT-RXN ==
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/4.99.1.1 ec-4.99.1.1]
 
* direction:
 
* direction:
−
** left-to-right
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** reversible
 
== Reaction formula ==
 
== Reaction formula ==
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* 1.0 [[5-AMINOPENTANOATE]][e] '''=>''' 1.0 [[5-AMINOPENTANOATE]][c]
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* 1 [[PROTOHEME]][c] '''+''' 2 [[PROTON]][c] '''<=>''' 1 [[FE+2]][c] '''+''' 1 [[PROTOPORPHYRIN_IX]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[HEME-BIOSYNTHESIS-II]], heme b biosynthesis I (aerobic):
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[HEMESYN2-PWY]], heme b biosynthesis II (anaerobic):
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY0-1415]], superpathway of heme b biosynthesis from uroporphyrinogen-III:
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from extracellular to cytosol compartment
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* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_spontaneous]]; tool: [[meneco]]; comment: added for gapfilling
 
== External links  ==
 
== External links  ==
−
{{#set: direction=left-to-right}}
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22584 22584]
 +
* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R00310 R00310]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P22830 P22830]
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** [http://www.uniprot.org/uniprot/P22315 P22315]
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** [http://www.uniprot.org/uniprot/P28602 P28602]
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** [http://www.uniprot.org/uniprot/Q05338 Q05338]
 +
** [http://www.uniprot.org/uniprot/P42043 P42043]
 +
** [http://www.uniprot.org/uniprot/P23871 P23871]
 +
** [http://www.uniprot.org/uniprot/P32396 P32396]
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** [http://www.uniprot.org/uniprot/Q9CFB4 Q9CFB4]
 +
** [http://www.uniprot.org/uniprot/P56107 P56107]
 +
** [http://www.uniprot.org/uniprot/O67083 O67083]
 +
** [http://www.uniprot.org/uniprot/Q9PI08 Q9PI08]
 +
** [http://www.uniprot.org/uniprot/Q9JVA5 Q9JVA5]
 +
** [http://www.uniprot.org/uniprot/P22600 P22600]
 +
** [http://www.uniprot.org/uniprot/P43868 P43868]
 +
** [http://www.uniprot.org/uniprot/P16622 P16622]
 +
** [http://www.uniprot.org/uniprot/Q59735 Q59735]
 +
** [http://www.uniprot.org/uniprot/P43413 P43413]
 +
** [http://www.uniprot.org/uniprot/P54225 P54225]
 +
** [http://www.uniprot.org/uniprot/P42045 P42045]
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** [http://www.uniprot.org/uniprot/O64391 O64391]
 +
** [http://www.uniprot.org/uniprot/P42044 P42044]
 +
</div>
 +
{{#set: ec-number=ec-4.99.1.1}}
 +
{{#set: direction=reversible}}
 
{{#set: nb gene associated=0}}
 
{{#set: nb gene associated=0}}
−
{{#set: nb pathway associated=0}}
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{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=manual}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: reconstruction tool=curation}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: reconstruction comment=added to manage seeds from extracellular to cytosol compartment}}
+
{{#set: reconstruction comment=added for gapfilling}}
−
{{#set: reconstruction source=import_from_medium}}
+
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_spontaneous}}

Latest revision as of 11:16, 17 October 2022

Reaction PROTOHEMEFERROCHELAT-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • HEME-BIOSYNTHESIS-II, heme b biosynthesis I (aerobic):
    • 2 reactions found over 4 reactions in the full pathway
  • HEMESYN2-PWY, heme b biosynthesis II (anaerobic):
    • 4 reactions found over 4 reactions in the full pathway
  • PWY0-1415, superpathway of heme b biosynthesis from uroporphyrinogen-III:
    • 3 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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