Difference between revisions of "FPPSYN-RXN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction ACSERLY-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.5.1.47 ec-2.5.1.47] * direction: ** reversible * common-name: ** cysteine synth...")
(Created page with "Category:reaction == Reaction FPPSYN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.5.1.10 ec-2.5.1.10] * direction: ** left-to-right == Reaction formula == * 1 D...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ACSERLY-RXN ==
+
== Reaction FPPSYN-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.5.1.47 ec-2.5.1.47]
+
** [http://enzyme.expasy.org/EC/2.5.1.10 ec-2.5.1.10]
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
−
* common-name:
 
−
** cysteine synthase a
 
−
** o-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ACETYLSERINE]][c] '''+''' 1 [[HS]][c] '''<=>''' 1 [[ACET]][c] '''+''' 1 [[CYS]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[DELTA3-ISOPENTENYL-PP]][c] '''+''' 1 [[GERANYL-PP]][c] '''=>''' 1 [[FARNESYL-PP]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[FSU_RS06175]]
−
* Gene: [[FISUC_RS00825]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
−
* Gene: [[FISUC_RS00790]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
−
* Gene: [[FISUC_RS05345]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
−
* Gene: [[FISUC_RS05625]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
−
* Gene: [[FSU_RS07285]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
−
* Gene: [[FSU_RS07365]]
+
* Gene: [[FSU_RS10165]]
−
** Category: [[orthology]]
 
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[FSU_RS07345]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[FSU_RS07240]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
−
* Gene: [[FSU_RS04350]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
−
* Gene: [[FSU_RS07525]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
−
* Gene: [[FSU_RS07245]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[FSU_RS02705]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
−
* Gene: [[FSU_RS02670]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
−
* Gene: [[FISUC_RS02460]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[FISUC_RS05350]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[CYSTSYN-PWY]], L-cysteine biosynthesis I:
+
* [[PWY-5123]], trans, trans-farnesyl diphosphate biosynthesis:
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6859]], all-trans-farnesol biosynthesis:
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7102]], bisabolene biosynthesis (engineered):
 +
** '''3''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7721]], methyl phomopsenoate biosynthesis:
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7736]], stellatic acid biosynthesis:
 +
** '''4''' reactions found over '''8''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
−
* category: [[annotation]]; source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 
 
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
−
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
+
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14832 14832]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19361 19361]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00897 R00897]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02003 R02003]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P31300 P31300]
+
** [http://www.uniprot.org/uniprot/P08524 P08524]
−
** [http://www.uniprot.org/uniprot/Q43153 Q43153]
+
** [http://www.uniprot.org/uniprot/P05369 P05369]
−
** [http://www.uniprot.org/uniprot/O67507 O67507]
+
** [http://www.uniprot.org/uniprot/P14324 P14324]
−
** [http://www.uniprot.org/uniprot/P47998 P47998]
+
** [http://www.uniprot.org/uniprot/Q9CH81 Q9CH81]
−
** [http://www.uniprot.org/uniprot/Q9V1Q3 Q9V1Q3]
+
** [http://www.uniprot.org/uniprot/Q9PM32 Q9PM32]
−
** [http://www.uniprot.org/uniprot/Q9RW80 Q9RW80]
+
** [http://www.uniprot.org/uniprot/P45204 P45204]
−
** [http://www.uniprot.org/uniprot/P56067 P56067]
+
** [http://www.uniprot.org/uniprot/Q9JSM0 Q9JSM0]
−
** [http://www.uniprot.org/uniprot/P63873 P63873]
+
** [http://www.uniprot.org/uniprot/P49350 P49350]
−
** [http://www.uniprot.org/uniprot/Q9CI26 Q9CI26]
+
** [http://www.uniprot.org/uniprot/P22939 P22939]
−
** [http://www.uniprot.org/uniprot/Q9ZMW6 Q9ZMW6]
+
** [http://www.uniprot.org/uniprot/Q08291 Q08291]
−
** [http://www.uniprot.org/uniprot/P45040 P45040]
+
** [http://www.uniprot.org/uniprot/P49349 P49349]
−
** [http://www.uniprot.org/uniprot/Q9WZD3 Q9WZD3]
+
** [http://www.uniprot.org/uniprot/Q09152 Q09152]
−
** [http://www.uniprot.org/uniprot/Q9CHF0 Q9CHF0]
+
** [http://www.uniprot.org/uniprot/P49351 P49351]
−
** [http://www.uniprot.org/uniprot/P0A534 P0A534]
+
** [http://www.uniprot.org/uniprot/P49352 P49352]
−
** [http://www.uniprot.org/uniprot/P71128 P71128]
+
** [http://www.uniprot.org/uniprot/Q43315 Q43315]
−
** [http://www.uniprot.org/uniprot/O05393 O05393]
+
** [http://www.uniprot.org/uniprot/O24241 O24241]
−
** [http://www.uniprot.org/uniprot/O34476 O34476]
+
** [http://www.uniprot.org/uniprot/O24242 O24242]
−
** [http://www.uniprot.org/uniprot/Q9JQL6 Q9JQL6]
+
** [http://www.uniprot.org/uniprot/Q92334 Q92334]
−
** [http://www.uniprot.org/uniprot/P38076 P38076]
+
** [http://www.uniprot.org/uniprot/Q92218 Q92218]
−
** [http://www.uniprot.org/uniprot/Q7M1J2 Q7M1J2]
+
** [http://www.uniprot.org/uniprot/Q92235 Q92235]
−
** [http://www.uniprot.org/uniprot/P29848 P29848]
+
** [http://www.uniprot.org/uniprot/Q92250 Q92250]
−
** [http://www.uniprot.org/uniprot/P32260 P32260]
+
** [http://www.uniprot.org/uniprot/Q8L7F4 Q8L7F4]
−
** [http://www.uniprot.org/uniprot/Q00834 Q00834]
+
** [http://www.uniprot.org/uniprot/P49353 P49353]
−
** [http://www.uniprot.org/uniprot/Q43317 Q43317]
+
** [http://www.uniprot.org/uniprot/O04882 O04882]
−
** [http://www.uniprot.org/uniprot/P47999 P47999]
+
** [http://www.uniprot.org/uniprot/O65004 O65004]
−
** [http://www.uniprot.org/uniprot/Q43726 Q43726]
+
** [http://www.uniprot.org/uniprot/O14230 O14230]
−
** [http://www.uniprot.org/uniprot/P80608 P80608]
 
−
** [http://www.uniprot.org/uniprot/Q59447 Q59447]
 
−
** [http://www.uniprot.org/uniprot/P53206 P53206]
 
−
** [http://www.uniprot.org/uniprot/P37887 P37887]
 
−
** [http://www.uniprot.org/uniprot/Q59529 Q59529]
 
−
** [http://www.uniprot.org/uniprot/P0A1E3 P0A1E3]
 
−
** [http://www.uniprot.org/uniprot/P0ABK5 P0ABK5]
 
−
** [http://www.uniprot.org/uniprot/P16703 P16703]
 
−
** [http://www.uniprot.org/uniprot/O81154 O81154]
 
−
** [http://www.uniprot.org/uniprot/O81155 O81155]
 
−
** [http://www.uniprot.org/uniprot/O81523 O81523]
 
−
** [http://www.uniprot.org/uniprot/Q93244 Q93244]
 
−
** [http://www.uniprot.org/uniprot/O45679 O45679]
 
−
** [http://www.uniprot.org/uniprot/Q9S2H1 Q9S2H1]
 
−
** [http://www.uniprot.org/uniprot/P87131 P87131]
 
−
** [http://www.uniprot.org/uniprot/Q9XDU7 Q9XDU7]
 
−
** [http://www.uniprot.org/uniprot/Q9UWP0 Q9UWP0]
 
−
** [http://www.uniprot.org/uniprot/O32978 O32978]
 
−
** [http://www.uniprot.org/uniprot/Q9RAS8 Q9RAS8]
 
−
** [http://www.uniprot.org/uniprot/Q9S757 Q9S757]
 
−
** [http://www.uniprot.org/uniprot/Q9S6Z7 Q9S6Z7]
 
−
** [http://www.uniprot.org/uniprot/Q43725 Q43725]
 
−
** [http://www.uniprot.org/uniprot/Q9SMY4 Q9SMY4]
 
 
</div>
 
</div>
−
{{#set: ec-number=ec-2.5.1.47}}
+
{{#set: ec-number=ec-2.5.1.10}}
−
{{#set: direction=reversible}}
+
{{#set: direction=left-to-right}}
−
{{#set: common-name=cysteine synthase a|o-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb gene associated=15}}
+
{{#set: nb pathway associated=5}}
−
{{#set: nb pathway associated=1}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction tool=orthofinder}}
−
{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=ecoli|plantarum|bthetaiotaomicron|fibrobacter_succinogenes2|faecalibacterium|fibrobacter_succinogenes1}}
+
{{#set: reconstruction source=bifidobacterium|plantarum|ecoli|bthetaiotaomicron}}

Latest revision as of 11:16, 17 October 2022

Reaction FPPSYN-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5123, trans, trans-farnesyl diphosphate biosynthesis:
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-6859, all-trans-farnesol biosynthesis:
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-7102, bisabolene biosynthesis (engineered):
    • 3 reactions found over 6 reactions in the full pathway
  • PWY-7721, methyl phomopsenoate biosynthesis:
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-7736, stellatic acid biosynthesis:
    • 4 reactions found over 8 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FPPSYN-RXN&oldid=92436"