Difference between revisions of "OROPRIBTRANS-RXN"

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(Created page with "Category:reaction == Reaction GALACTONDEHYDRAT-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/4.2.1.140 ec-4.2.1.140] ** [http://enzyme.expasy.org/EC/4.2.1.6 ec-4.2.1...")
(Created page with "Category:reaction == Reaction OROPRIBTRANS-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.4.2.10 ec-2.4.2.10] * direction: ** reversible * common-name: ** orotate p...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GALACTONDEHYDRAT-RXN ==
+
== Reaction OROPRIBTRANS-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.2.1.140 ec-4.2.1.140]
+
** [http://enzyme.expasy.org/EC/2.4.2.10 ec-2.4.2.10]
−
** [http://enzyme.expasy.org/EC/4.2.1.6 ec-4.2.1.6]
 
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 +
* common-name:
 +
** orotate phosphoribosyltransferase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[D-GALACTONATE]][c] '''=>''' 1 [[2-DEHYDRO-3-DEOXY-D-GALACTONATE]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[OROTIDINE-5-PHOSPHATE]][c] '''+''' 1 [[PPI]][c] '''<=>''' 1 [[OROTATE]][c] '''+''' 1 [[PRPP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[FSU_RS04210]]
 +
** Category: [[annotation]]
 +
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 +
* Gene: [[FISUC_RS02320]]
 +
** Category: [[annotation]]
 +
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[FSU_RS01250]]
 +
** Category: [[orthology]]
 +
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[GALACTCAT-PWY]], D-galactonate degradation:
+
* [[PWY-5686]], UMP biosynthesis I:
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7790]], UMP biosynthesis II:
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7791]], UMP biosynthesis III:
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[add_expert_reactions]]; tool: [[curation]]; comment: to improve flux in glycogen
+
* category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[annotation]]; source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 +
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18650 18650]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10383 10383]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03033 R03033]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01870 R01870]
−
{{#set: ec-number=ec-4.2.1.140|ec-4.2.1.6}}
+
* UNIPROT:
−
{{#set: direction=left-to-right}}
+
** [http://www.uniprot.org/uniprot/P08309 P08309]
−
{{#set: nb gene associated=0}}
+
** [http://www.uniprot.org/uniprot/P11172 P11172]
−
{{#set: nb pathway associated=1}}
+
** [http://www.uniprot.org/uniprot/P18132 P18132]
−
{{#set: reconstruction category=manual}}
+
** [http://www.uniprot.org/uniprot/P77889 P77889]
−
{{#set: reconstruction tool=curation}}
+
** [http://www.uniprot.org/uniprot/P0A5U0 P0A5U0]
−
{{#set: reconstruction comment=to improve flux in glycogen}}
+
** [http://www.uniprot.org/uniprot/Q9PIR1 Q9PIR1]
−
{{#set: reconstruction source=add_expert_reactions}}
+
** [http://www.uniprot.org/uniprot/O67742 O67742]
 +
** [http://www.uniprot.org/uniprot/O58855 O58855]
 +
** [http://www.uniprot.org/uniprot/Q9Z7U6 Q9Z7U6]
 +
** [http://www.uniprot.org/uniprot/Q9Y9D8 Q9Y9D8]
 +
** [http://www.uniprot.org/uniprot/P56814 P56814]
 +
** [http://www.uniprot.org/uniprot/Q58509 Q58509]
 +
** [http://www.uniprot.org/uniprot/O28533 O28533]
 +
** [http://www.uniprot.org/uniprot/Q9CGM8 Q9CGM8]
 +
** [http://www.uniprot.org/uniprot/P25972 P25972]
 +
** [http://www.uniprot.org/uniprot/O27888 O27888]
 +
** [http://www.uniprot.org/uniprot/P65915 P65915]
 +
** [http://www.uniprot.org/uniprot/P46534 P46534]
 +
** [http://www.uniprot.org/uniprot/P43855 P43855]
 +
** [http://www.uniprot.org/uniprot/P31754 P31754]
 +
** [http://www.uniprot.org/uniprot/P18904 P18904]
 +
** [http://www.uniprot.org/uniprot/Q01637 Q01637]
 +
** [http://www.uniprot.org/uniprot/P09556 P09556]
 +
** [http://www.uniprot.org/uniprot/P21846 P21846]
 +
** [http://www.uniprot.org/uniprot/P35788 P35788]
 +
** [http://www.uniprot.org/uniprot/P08870 P08870]
 +
** [http://www.uniprot.org/uniprot/Q18516 Q18516]
 +
** [http://www.uniprot.org/uniprot/Q45918 Q45918]
 +
** [http://www.uniprot.org/uniprot/Q42586 Q42586]
 +
** [http://www.uniprot.org/uniprot/P41923 P41923]
 +
** [http://www.uniprot.org/uniprot/Q55574 Q55574]
 +
** [http://www.uniprot.org/uniprot/Q42942 Q42942]
 +
** [http://www.uniprot.org/uniprot/O76139 O76139]
 +
** [http://www.uniprot.org/uniprot/O61790 O61790]
 +
** [http://www.uniprot.org/uniprot/Q9X8R7 Q9X8R7]
 +
** [http://www.uniprot.org/uniprot/O94331 O94331]
 +
** [http://www.uniprot.org/uniprot/P30402 P30402]
 +
** [http://www.uniprot.org/uniprot/P13298 P13298]
 +
** [http://www.uniprot.org/uniprot/P0A7E3 P0A7E3]
 +
</div>
 +
{{#set: ec-number=ec-2.4.2.10}}
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=orotate phosphoribosyltransferase}}
 +
{{#set: nb gene associated=3}}
 +
{{#set: nb pathway associated=3}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction tool=orthofinder|pathwaytools}}
 +
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=ecoli|bifidobacterium|fibrobacter_succinogenes2|faecalibacterium|fibrobacter_succinogenes1}}

Latest revision as of 11:16, 17 October 2022

Reaction OROPRIBTRANS-RXN

  • ec-number:
  • direction:
    • reversible
  • common-name:
    • orotate phosphoribosyltransferase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5686, UMP biosynthesis I:
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-7790, UMP biosynthesis II:
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-7791, UMP biosynthesis III:
    • 5 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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