Difference between revisions of "RXN66-472"

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(Created page with "Category:reaction == Reaction ATPPHOSPHORIBOSYLTRANS-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.4.2.17 ec-2.4.2.17] * direction: ** reversible * common-name: **...")
(Created page with "Category:reaction == Reaction RXN66-472 == * common-name: ** fatty aldehyde dehydrogenase * ec-number: ** [http://enzyme.expasy.org/EC/1.2.1.3 ec-1.2.1.3] * direction: **...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ATPPHOSPHORIBOSYLTRANS-RXN ==
+
== Reaction RXN66-472 ==
 +
* common-name:
 +
** fatty aldehyde dehydrogenase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.4.2.17 ec-2.4.2.17]
+
** [http://enzyme.expasy.org/EC/1.2.1.3 ec-1.2.1.3]
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
−
* common-name:
 
−
** atp phosphoribosyltransferase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[PHOSPHORIBOSYL-ATP]][c] '''+''' 1 [[PPI]][c] '''<=>''' 1 [[ATP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[PRPP]][c]
+
* 1 [[2-Me-Branched-234-Sat-FALD]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[2-Me-Branched-234-Sat-FA]][c] '''+''' 1 [[NADH]][c] '''+''' 2 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FISUC_RS05710]]
+
* Gene: [[FSU_RS01755]]
−
** Category: [[annotation]]
+
** Category: [[manual]]
−
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[add_expert_reactions]], Tool: [[unknown-tool]], Assignment: n.a, Comment: added to improve flux in sugars
−
* Gene: [[FSU_RS07610]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[HISTSYN-PWY]], L-histidine biosynthesis:
+
* [[PWY66-387]], fatty acid &alpha;-oxidation II:
−
** '''10''' reactions found over '''10''' reactions in the full pathway
+
** '''3''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
+
* category: [[manual]]; source: [[add_expert_reactions]]; tool: [[curation]]; comment: present in the annotation part in the first version of the fibrobacter gem
−
* category: [[annotation]]; source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 
−
* category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
−
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
{{#set: common-name=fatty aldehyde dehydrogenase}}
−
* RHEA:
+
{{#set: ec-number=ec-1.2.1.3}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18476 18476]
+
{{#set: direction=left-to-right}}
−
* LIGAND-RXN:
+
{{#set: nb gene associated=1}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R01071 R01071]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q9X0D2 Q9X0D2]
 
−
** [http://www.uniprot.org/uniprot/Q58601 Q58601]
 
−
** [http://www.uniprot.org/uniprot/O34520 O34520]
 
−
** [http://www.uniprot.org/uniprot/Q9RUE2 Q9RUE2]
 
−
** [http://www.uniprot.org/uniprot/P64347 P64347]
 
−
** [http://www.uniprot.org/uniprot/Q9PM78 Q9PM78]
 
−
** [http://www.uniprot.org/uniprot/Q02129 Q02129]
 
−
** [http://www.uniprot.org/uniprot/P43853 P43853]
 
−
** [http://www.uniprot.org/uniprot/O67543 O67543]
 
−
** [http://www.uniprot.org/uniprot/P40373 P40373]
 
−
** [http://www.uniprot.org/uniprot/P46586 P46586]
 
−
** [http://www.uniprot.org/uniprot/Q55503 Q55503]
 
−
** [http://www.uniprot.org/uniprot/Q9S762 Q9S762]
 
−
** [http://www.uniprot.org/uniprot/P00498 P00498]
 
−
** [http://www.uniprot.org/uniprot/P00499 P00499]
 
−
** [http://www.uniprot.org/uniprot/P60757 P60757]
 
−
</div>
 
−
{{#set: ec-number=ec-2.4.2.17}}
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=atp phosphoribosyltransferase}}
 
−
{{#set: nb gene associated=2}}
 
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=manual}}
−
{{#set: reconstruction tool=orthofinder|pathwaytools}}
+
{{#set: reconstruction tool=curation}}
−
{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction comment=present in the annotation part in the first version of the fibrobacter gem}}
−
{{#set: reconstruction source=ecoli|plantarum|bifidobacterium|bthetaiotaomicron|fibrobacter_succinogenes2|faecalibacterium|fibrobacter_succinogenes1}}
+
{{#set: reconstruction source=add_expert_reactions}}

Latest revision as of 11:17, 17 October 2022

Reaction RXN66-472

  • common-name:
    • fatty aldehyde dehydrogenase
  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY66-387, fatty acid α-oxidation II:
    • 3 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=RXN66-472&oldid=92687"