Difference between revisions of "PRIBFAICARPISOM-RXN"

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(Created page with "Category:reaction == Reaction GDP-MANNOSE-6-DEHYDROGENASE-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/1.1.1.132 ec-1.1.1.132] * direction: ** left-to-right == Reac...")
(Created page with "Category:reaction == Reaction PRIBFAICARPISOM-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/5.3.1.16 ec-5.3.1.16] * direction: ** left-to-right * common-name: ** pho...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GDP-MANNOSE-6-DEHYDROGENASE-RXN ==
+
== Reaction PRIBFAICARPISOM-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.132 ec-1.1.1.132]
+
** [http://enzyme.expasy.org/EC/5.3.1.16 ec-5.3.1.16]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* common-name:
 +
** phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[GDP-MANNOSE]][c] '''+''' 2 [[NAD]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-1828]][c] '''+''' 2 [[NADH]][c] '''+''' 3 [[PROTON]][c]
+
* 1 [[PHOSPHORIBOSYL-FORMIMINO-AICAR-P]][c] '''=>''' 1 [[PHOSPHORIBULOSYL-FORMIMINO-AICAR-P]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS06690]]
+
* Gene: [[FSU_RS13230]]
−
** Category: [[manual]]
+
** Category: [[annotation]]
−
*** Source: [[add_expert_reactions]], Tool: [[unknown-tool]], Assignment: n.a, Comment: added to improve flux in sugars
+
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
* Gene: [[FISUC_RS11265]]
 +
** Category: [[annotation]]
 +
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6073]], alginate biosynthesis I (algal):
+
* [[HISTSYN-PWY]], L-histidine biosynthesis:
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
** '''10''' reactions found over '''10''' reactions in the full pathway
−
* [[PWY-6082]], alginate biosynthesis II (bacterial):
 
−
** '''1''' reactions found over '''7''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[add_expert_reactions]]; tool: [[curation]]; comment: present in the annotation part in the first version of the fibrobacter gem
+
* category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[annotation]]; source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21731 21731]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15470 15470]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00880 R00880]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04640 R04640]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P11759 P11759]
+
** [http://www.uniprot.org/uniprot/Q02131 Q02131]
−
{{#set: ec-number=ec-1.1.1.132}}
+
** [http://www.uniprot.org/uniprot/Q9JVH4 Q9JVH4]
 +
** [http://www.uniprot.org/uniprot/Q9PM74 Q9PM74]
 +
** [http://www.uniprot.org/uniprot/P44435 P44435]
 +
** [http://www.uniprot.org/uniprot/P10372 P10372]
 +
** [http://www.uniprot.org/uniprot/P10371 P10371]
 +
** [http://www.uniprot.org/uniprot/P16250 P16250]
 +
** [http://www.uniprot.org/uniprot/P05324 P05324]
 +
** [http://www.uniprot.org/uniprot/P26720 P26720]
 +
** [http://www.uniprot.org/uniprot/P50936 P50936]
 +
** [http://www.uniprot.org/uniprot/P74561 P74561]
 +
** [http://www.uniprot.org/uniprot/O82782 O82782]
 +
{{#set: ec-number=ec-5.3.1.16}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=1}}
+
{{#set: common-name=phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb gene associated=2}}
−
{{#set: reconstruction category=manual}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction tool=curation}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction comment=present in the annotation part in the first version of the fibrobacter gem}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=add_expert_reactions}}
+
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=fibrobacter_succinogenes2|fibrobacter_succinogenes1}}

Latest revision as of 11:17, 17 October 2022

Reaction PRIBFAICARPISOM-RXN

  • ec-number:
  • direction:
    • left-to-right
  • common-name:
    • phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • HISTSYN-PWY, L-histidine biosynthesis:
    • 10 reactions found over 10 reactions in the full pathway

Reconstruction information

External links





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