Difference between revisions of "INORGPYROPHOSPHAT-RXN"
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(Created page with "Category:reaction == Reaction RXN-14225 == * ec-number: ** [http://enzyme.expasy.org/EC/1.2.1.3 ec-1.2.1.3] * direction: ** left-to-right == Reaction formula == * 1 D-GL...") |
(Created page with "Category:reaction == Reaction INORGPYROPHOSPHAT-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/3.6.1.1 ec-3.6.1.1] * direction: ** left-to-right * common-name: ** ino...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction INORGPYROPHOSPHAT-RXN == |
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/3.6.1.1 ec-3.6.1.1] |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
+ | * common-name: | ||
+ | ** inorganic diphosphatase | ||
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[PPI]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PROTON]][c] '''+''' 2 [[Pi]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
− | ** Category: [[ | + | * Gene: [[FSU_RS02780]] |
− | *** Source: [[ | + | ** Category: [[annotation]] |
+ | *** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[FISUC_RS00900]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a | ||
+ | * Gene: [[FISUC_RS12850]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a | ||
+ | * Gene: [[FSU_RS03695]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[FISUC_RS10935]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[FSU_RS12900]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[FSU_RS16335]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[FSU_RS14825]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a | ||
+ | </div> | ||
== Pathway(s) == | == Pathway(s) == | ||
+ | * [[PWY-7807]], glyphosate degradation III: | ||
+ | ** '''2''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[PWY-7805]], (aminomethyl)phosphonate degradation: | ||
+ | ** '''2''' reactions found over '''8''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
− | * category: [[ | + | * category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a |
+ | * category: [[annotation]]; source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a | ||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24576 24576] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R00004 R00004] |
− | {{#set: ec-number=ec- | + | * UNIPROT: |
+ | ** [http://www.uniprot.org/uniprot/P21616 P21616] | ||
+ | ** [http://www.uniprot.org/uniprot/P31414 P31414] | ||
+ | ** [http://www.uniprot.org/uniprot/P28239 P28239] | ||
+ | ** [http://www.uniprot.org/uniprot/P37980 P37980] | ||
+ | ** [http://www.uniprot.org/uniprot/P84491 P84491] | ||
+ | ** [http://www.uniprot.org/uniprot/O59570 O59570] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9S941 Q9S941] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9S939 Q9S939] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9S936 Q9S936] | ||
+ | ** [http://www.uniprot.org/uniprot/O26363 O26363] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9S940 Q9S940] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9S938 Q9S938] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9S937 Q9S937] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PHM9 Q9PHM9] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9UY24 Q9UY24] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JVG3 Q9JVG3] | ||
+ | ** [http://www.uniprot.org/uniprot/P47593 P47593] | ||
+ | ** [http://www.uniprot.org/uniprot/Q974Y8 Q974Y8] | ||
+ | ** [http://www.uniprot.org/uniprot/O05724 O05724] | ||
+ | ** [http://www.uniprot.org/uniprot/P19514 P19514] | ||
+ | ** [http://www.uniprot.org/uniprot/P00817 P00817] | ||
+ | ** [http://www.uniprot.org/uniprot/P0A7A9 P0A7A9] | ||
+ | ** [http://www.uniprot.org/uniprot/P13998 P13998] | ||
+ | ** [http://www.uniprot.org/uniprot/P19117 P19117] | ||
+ | ** [http://www.uniprot.org/uniprot/P21216 P21216] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9R5T3 Q9R5T3] | ||
+ | ** [http://www.uniprot.org/uniprot/P37981 P37981] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43801 Q43801] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43798 Q43798] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43797 Q43797] | ||
+ | ** [http://www.uniprot.org/uniprot/P50308 P50308] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43796 Q43796] | ||
+ | ** [http://www.uniprot.org/uniprot/P93409 P93409] | ||
+ | ** [http://www.uniprot.org/uniprot/Q8H616 Q8H616] | ||
+ | ** [http://www.uniprot.org/uniprot/P93410 P93410] | ||
+ | ** [http://www.uniprot.org/uniprot/P75250 P75250] | ||
+ | ** [http://www.uniprot.org/uniprot/Q49071 Q49071] | ||
+ | ** [http://www.uniprot.org/uniprot/O48556 O48556] | ||
+ | ** [http://www.uniprot.org/uniprot/O22537 O22537] | ||
+ | ** [http://www.uniprot.org/uniprot/O82793 O82793] | ||
+ | ** [http://www.uniprot.org/uniprot/O23979 O23979] | ||
+ | ** [http://www.uniprot.org/uniprot/O49949 O49949] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43187 Q43187] | ||
+ | ** [http://www.uniprot.org/uniprot/O22124 O22124] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42650 Q42650] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42651 Q42651] | ||
+ | ** [http://www.uniprot.org/uniprot/O65151 O65151] | ||
+ | </div> | ||
+ | {{#set: ec-number=ec-3.6.1.1}} | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: nb gene associated= | + | {{#set: common-name=inorganic diphosphatase}} |
− | {{#set: nb pathway associated= | + | {{#set: nb gene associated=8}} |
− | {{#set: reconstruction category= | + | {{#set: nb pathway associated=2}} |
− | {{#set: reconstruction tool= | + | {{#set: reconstruction category=orthology|annotation}} |
− | {{#set: reconstruction comment= | + | {{#set: reconstruction tool=orthofinder|pathwaytools}} |
− | {{#set: reconstruction source= | + | {{#set: reconstruction comment=n.a}} |
+ | {{#set: reconstruction source=ecoli|plantarum|bifidobacterium|fibrobacter_succinogenes2|faecalibacterium|fibrobacter_succinogenes1}} |
Latest revision as of 11:17, 17 October 2022
Contents
Reaction INORGPYROPHOSPHAT-RXN
- ec-number:
- direction:
- left-to-right
- common-name:
- inorganic diphosphatase
Reaction formula
Gene(s) associated with this reaction
- Gene: FSU_RS02780
- Category: annotation
- Source: fibrobacter_succinogenes1, Tool: pathwaytools, Assignment: automated-name-match, Comment: n.a
- Category: orthology
- Source: faecalibacterium, Tool: orthofinder, Assignment: n.a, Comment: n.a
- Source: plantarum, Tool: orthofinder, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: FISUC_RS00900
- Category: annotation
- Source: fibrobacter_succinogenes2, Tool: pathwaytools, Assignment: automated-name-match, Comment: n.a
- Category: annotation
- Gene: FISUC_RS12850
- Category: annotation
- Source: fibrobacter_succinogenes2, Tool: pathwaytools, Assignment: automated-name-match, Comment: n.a
- Category: annotation
- Gene: FSU_RS03695
- Category: orthology
- Source: ecoli, Tool: orthofinder, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: FISUC_RS10935
- Category: orthology
- Source: ecoli, Tool: orthofinder, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: FSU_RS12900
- Category: orthology
- Source: ecoli, Tool: orthofinder, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: FSU_RS16335
- Category: orthology
- Source: ecoli, Tool: orthofinder, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: FSU_RS14825
- Category: annotation
- Source: fibrobacter_succinogenes1, Tool: pathwaytools, Assignment: automated-name-match, Comment: n.a
- Category: orthology
- Source: ecoli, Tool: orthofinder, Assignment: n.a, Comment: n.a
- Source: bifidobacterium, Tool: orthofinder, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-7807, glyphosate degradation III:
- 2 reactions found over 7 reactions in the full pathway
- PWY-7805, (aminomethyl)phosphonate degradation:
- 2 reactions found over 8 reactions in the full pathway
Reconstruction information
- category: annotation; source: fibrobacter_succinogenes1; tool: pathwaytools; comment: n.a
- category: annotation; source: fibrobacter_succinogenes2; tool: pathwaytools; comment: n.a
- category: orthology; source: bifidobacterium; tool: orthofinder; comment: n.a
- category: orthology; source: plantarum; tool: orthofinder; comment: n.a
- category: orthology; source: faecalibacterium; tool: orthofinder; comment: n.a
- category: orthology; source: ecoli; tool: orthofinder; comment: n.a
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT:
- P21616
- P31414
- P28239
- P37980
- P84491
- O59570
- Q9S941
- Q9S939
- Q9S936
- O26363
- Q9S940
- Q9S938
- Q9S937
- Q9PHM9
- Q9UY24
- Q9JVG3
- P47593
- Q974Y8
- O05724
- P19514
- P00817
- P0A7A9
- P13998
- P19117
- P21216
- Q9R5T3
- P37981
- Q43801
- Q43798
- Q43797
- P50308
- Q43796
- P93409
- Q8H616
- P93410
- P75250
- Q49071
- O48556
- O22537
- O82793
- O23979
- O49949
- Q43187
- O22124
- Q42650
- Q42651
- O65151