Difference between revisions of "RXN-15149"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction GLUTRACE-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/5.1.1.3 ec-5.1.1.3] * direction: ** reversible * common-name: ** glutamate racem...")
(Created page with "Category:reaction == Reaction RXN-15149 == * direction: ** left-to-right == Reaction formula == * 1 CPD-68[c] '''=>''' 1 CPD-15056[c] '''+''' 1 PROTON[c] == Ge...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GLUTRACE-RXN ==
+
== Reaction RXN-15149 ==
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/5.1.1.3 ec-5.1.1.3]
 
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
−
* common-name:
 
−
** glutamate racemase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[GLT]][c] '''<=>''' 1 [[D-GLT]][c]
+
* 1 [[CPD-68]][c] '''=>''' 1 [[CPD-15056]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS05370]]
+
* Gene: [[FSU_RS15290]]
−
** Category: [[annotation]]
+
** Category: [[manual]]
−
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[add_expert_reactions]], Tool: [[unknown-tool]], Assignment: n.a, Comment: added to improve flux in sugars
−
** Category: [[orthology]]
 
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[FISUC_RS03480]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6386]], UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing):
 
−
** '''8''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-6387]], UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing):
 
−
** '''8''' reactions found over '''8''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
+
* category: [[manual]]; source: [[add_expert_reactions]]; tool: [[curation]]; comment: present in the annotation part in the first version of the fibrobacter gem
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
−
* category: [[annotation]]; source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12816 12816]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=39972 39972]
−
* LIGAND-RXN:
+
{{#set: direction=left-to-right}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00260 R00260]
+
{{#set: nb gene associated=1}}
−
* UNIPROT:
+
{{#set: nb pathway associated=0}}
−
** [http://www.uniprot.org/uniprot/Q03469 Q03469]
+
{{#set: reconstruction category=manual}}
−
** [http://www.uniprot.org/uniprot/P94556 P94556]
+
{{#set: reconstruction tool=curation}}
−
** [http://www.uniprot.org/uniprot/Q9PM24 Q9PM24]
+
{{#set: reconstruction comment=present in the annotation part in the first version of the fibrobacter gem}}
−
** [http://www.uniprot.org/uniprot/Q9CG28 Q9CG28]
+
{{#set: reconstruction source=add_expert_reactions}}
−
** [http://www.uniprot.org/uniprot/P0A0R0 P0A0R0]
 
−
** [http://www.uniprot.org/uniprot/P0A0Q9 P0A0Q9]
 
−
** [http://www.uniprot.org/uniprot/P56068 P56068]
 
−
** [http://www.uniprot.org/uniprot/P48797 P48797]
 
−
** [http://www.uniprot.org/uniprot/Q7M0V6 Q7M0V6]
 
−
** [http://www.uniprot.org/uniprot/P46705 P46705]
 
−
** [http://www.uniprot.org/uniprot/P73737 P73737]
 
−
** [http://www.uniprot.org/uniprot/P52973 P52973]
 
−
{{#set: ec-number=ec-5.1.1.3}}
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=glutamate racemase}}
 
−
{{#set: nb gene associated=2}}
 
−
{{#set: nb pathway associated=2}}
 
−
{{#set: reconstruction category=orthology|annotation}}
 
−
{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=ecoli|bifidobacterium|plantarum|bthetaiotaomicron|fibrobacter_succinogenes2|faecalibacterium|fibrobacter_succinogenes1}}
 

Latest revision as of 11:17, 17 October 2022

Reaction RXN-15149

  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=RXN-15149&oldid=92979"