Difference between revisions of "RXN-2043"

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(Created page with "Category:reaction == Reaction ExchangeSeed-PROPIONATE == * direction: ** reversible == Reaction formula == * 1.0 PROPIONATE[C-BOUNDARY] '''<=>''' 1.0 PROPIONATE[e]...")
(Created page with "Category:reaction == Reaction RXN-2043 == * ec-number: ** [http://enzyme.expasy.org/EC/3.2.1.4 ec-3.2.1.4] * direction: ** left-to-right * common-name: ** endoglucanase **...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ExchangeSeed-PROPIONATE ==
+
== Reaction RXN-2043 ==
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/3.2.1.4 ec-3.2.1.4]
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 +
* common-name:
 +
** endoglucanase
 +
** cellulase
 +
** glycosyl hydrolase family 5
 +
** endo-1,4-beta-glucanase
 +
** glycoside hydrolase
 +
** carbohydrate-binding protein
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1.0 [[PROPIONATE]][C-BOUNDARY] '''<=>''' 1.0 [[PROPIONATE]][e]
+
* 1 [[CELLULOSE]][c] '''+''' 1 [[WATER]][c] '''=>''' 2 [[Cellodextrins]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[FSU_RS13840]]
 +
** Category: [[annotation]]
 +
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
* Gene: [[FSU_RS13620]]
 +
** Category: [[annotation]]
 +
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
* Gene: [[FSU_RS02155]]
 +
** Category: [[annotation]]
 +
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[FSU_RS09585]]
 +
** Category: [[annotation]]
 +
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[FSU_RS13175]]
 +
** Category: [[annotation]]
 +
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[FSU_RS01825]]
 +
** Category: [[annotation]]
 +
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[FSU_RS09265]]
 +
** Category: [[annotation]]
 +
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[FISUC_RS15630]]
 +
** Category: [[annotation]]
 +
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[FISUC_RS11210]]
 +
** Category: [[annotation]]
 +
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[FISUC_RS00285]]
 +
** Category: [[annotation]]
 +
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[FISUC_RS07660]]
 +
** Category: [[annotation]]
 +
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[FISUC_RS11650]]
 +
** Category: [[annotation]]
 +
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 +
* Gene: [[FISUC_RS14460]]
 +
** Category: [[annotation]]
 +
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[FSU_RS00650]]
 +
** Category: [[annotation]]
 +
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[FSU_RS11205]]
 +
** Category: [[annotation]]
 +
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-6788]], cellulose degradation II (fungi):
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from boundary to extracellular compartment
+
* category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[annotation]]; source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: direction=reversible}}
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
{{#set: nb gene associated=0}}
+
* UNIPROT:
−
{{#set: nb pathway associated=0}}
+
** [http://www.uniprot.org/uniprot/O64949 O64949]
−
{{#set: reconstruction category=manual}}
+
** [http://www.uniprot.org/uniprot/O64402 O64402]
−
{{#set: reconstruction tool=curation}}
+
** [http://www.uniprot.org/uniprot/O59943 O59943]
−
{{#set: reconstruction comment=added to manage seeds from boundary to extracellular compartment}}
+
** [http://www.uniprot.org/uniprot/P22503 P22503]
−
{{#set: reconstruction source=import_from_medium}}
+
** [http://www.uniprot.org/uniprot/O50014 O50014]
 +
** [http://www.uniprot.org/uniprot/O50013 O50013]
 +
** [http://www.uniprot.org/uniprot/O50012 O50012]
 +
** [http://www.uniprot.org/uniprot/O50011 O50011]
 +
** [http://www.uniprot.org/uniprot/O64401 O64401]
 +
** [http://www.uniprot.org/uniprot/O23954 O23954]
 +
** [http://www.uniprot.org/uniprot/O22298 O22298]
 +
** [http://www.uniprot.org/uniprot/O22297 O22297]
 +
** [http://www.uniprot.org/uniprot/O04890 O04890]
 +
** [http://www.uniprot.org/uniprot/Q39848 Q39848]
 +
** [http://www.uniprot.org/uniprot/Q39847 Q39847]
 +
** [http://www.uniprot.org/uniprot/O04972 O04972]
 +
** [http://www.uniprot.org/uniprot/Q41012 Q41012]
 +
** [http://www.uniprot.org/uniprot/Q39826 Q39826]
 +
** [http://www.uniprot.org/uniprot/Q42872 Q42872]
 +
** [http://www.uniprot.org/uniprot/Q42871 Q42871]
 +
** [http://www.uniprot.org/uniprot/Q9SVJ2 Q9SVJ2]
 +
** [http://www.uniprot.org/uniprot/Q9SVJ3 Q9SVJ3]
 +
** [http://www.uniprot.org/uniprot/Q9SVJ4 Q9SVJ4]
 +
** [http://www.uniprot.org/uniprot/Q9SUS0 Q9SUS0]
 +
** [http://www.uniprot.org/uniprot/Q9SZ90 Q9SZ90]
 +
** [http://www.uniprot.org/uniprot/O64890 O64890]
 +
** [http://www.uniprot.org/uniprot/O64889 O64889]
 +
** [http://www.uniprot.org/uniprot/O82513 O82513]
 +
** [http://www.uniprot.org/uniprot/O80497 O80497]
 +
** [http://www.uniprot.org/uniprot/O64891 O64891]
 +
** [http://www.uniprot.org/uniprot/O81416 O81416]
 +
** [http://www.uniprot.org/uniprot/O48766 O48766]
 +
** [http://www.uniprot.org/uniprot/Q55365 Q55365]
 +
** [http://www.uniprot.org/uniprot/Q38890 Q38890]
 +
** [http://www.uniprot.org/uniprot/Q12665 Q12665]
 +
** [http://www.uniprot.org/uniprot/Q43751 Q43751]
 +
** [http://www.uniprot.org/uniprot/Q9SML6 Q9SML6]
 +
** [http://www.uniprot.org/uniprot/Q43750 Q43750]
 +
** [http://www.uniprot.org/uniprot/Q38817 Q38817]
 +
** [http://www.uniprot.org/uniprot/P43317 P43317]
 +
** [http://www.uniprot.org/uniprot/Q42875 Q42875]
 +
** [http://www.uniprot.org/uniprot/Q42660 Q42660]
 +
** [http://www.uniprot.org/uniprot/Q59665 Q59665]
 +
** [http://www.uniprot.org/uniprot/Q59395 Q59395]
 +
** [http://www.uniprot.org/uniprot/Q43149 Q43149]
 +
** [http://www.uniprot.org/uniprot/Q12624 Q12624]
 +
** [http://www.uniprot.org/uniprot/P38534 P38534]
 +
** [http://www.uniprot.org/uniprot/P23666 P23666]
 +
** [http://www.uniprot.org/uniprot/P19424 P19424]
 +
** [http://www.uniprot.org/uniprot/P07982 P07982]
 +
** [http://www.uniprot.org/uniprot/Q05156 Q05156]
 +
** [http://www.uniprot.org/uniprot/Q7M0M9 Q7M0M9]
 +
** [http://www.uniprot.org/uniprot/Q9R5L7 Q9R5L7]
 +
** [http://www.uniprot.org/uniprot/Q53302 Q53302]
 +
** [http://www.uniprot.org/uniprot/P26224 P26224]
 +
** [http://www.uniprot.org/uniprot/P21834 P21834]
 +
** [http://www.uniprot.org/uniprot/P21833 P21833]
 +
** [http://www.uniprot.org/uniprot/P22669 P22669]
 +
** [http://www.uniprot.org/uniprot/P05522 P05522]
 +
** [http://www.uniprot.org/uniprot/P07103 P07103]
 +
** [http://www.uniprot.org/uniprot/P10474 P10474]
 +
** [http://www.uniprot.org/uniprot/Q46002 Q46002]
 +
** [http://www.uniprot.org/uniprot/P16630 P16630]
 +
** [http://www.uniprot.org/uniprot/Q59241 Q59241]
 +
** [http://www.uniprot.org/uniprot/P13933 P13933]
 +
** [http://www.uniprot.org/uniprot/P07985 P07985]
 +
** [http://www.uniprot.org/uniprot/P19570 P19570]
 +
** [http://www.uniprot.org/uniprot/P20847 P20847]
 +
** [http://www.uniprot.org/uniprot/P23549 P23549]
 +
** [http://www.uniprot.org/uniprot/P23550 P23550]
 +
** [http://www.uniprot.org/uniprot/P19487 P19487]
 +
** [http://www.uniprot.org/uniprot/P16218 P16218]
 +
** [http://www.uniprot.org/uniprot/P23340 P23340]
 +
** [http://www.uniprot.org/uniprot/Q01409 Q01409]
 +
** [http://www.uniprot.org/uniprot/O67401 O67401]
 +
** [http://www.uniprot.org/uniprot/Q7M4T4 Q7M4T4]
 +
** [http://www.uniprot.org/uniprot/P28622 P28622]
 +
** [http://www.uniprot.org/uniprot/P94622 P94622]
 +
** [http://www.uniprot.org/uniprot/Q45554 Q45554]
 +
** [http://www.uniprot.org/uniprot/Q59963 Q59963]
 +
** [http://www.uniprot.org/uniprot/P54937 P54937]
 +
** [http://www.uniprot.org/uniprot/Q03882 Q03882]
 +
** [http://www.uniprot.org/uniprot/P10475 P10475]
 +
** [http://www.uniprot.org/uniprot/P10477 P10477]
 +
** [http://www.uniprot.org/uniprot/P04954 P04954]
 +
** [http://www.uniprot.org/uniprot/P04956 P04956]
 +
** [http://www.uniprot.org/uniprot/P04955 P04955]
 +
** [http://www.uniprot.org/uniprot/Q01786 Q01786]
 +
** [http://www.uniprot.org/uniprot/P26221 P26221]
 +
** [http://www.uniprot.org/uniprot/P29719 P29719]
 +
** [http://www.uniprot.org/uniprot/P06565 P06565]
 +
** [http://www.uniprot.org/uniprot/Q59290 Q59290]
 +
** [http://www.uniprot.org/uniprot/Q12714 Q12714]
 +
** [http://www.uniprot.org/uniprot/P17877 P17877]
 +
** [http://www.uniprot.org/uniprot/P29019 P29019]
 +
** [http://www.uniprot.org/uniprot/P16216 P16216]
 +
** [http://www.uniprot.org/uniprot/P17974 P17974]
 +
** [http://www.uniprot.org/uniprot/P26222 P26222]
 +
** [http://www.uniprot.org/uniprot/Q53324 Q53324]
 +
** [http://www.uniprot.org/uniprot/Q05332 Q05332]
 +
** [http://www.uniprot.org/uniprot/P23548 P23548]
 +
** [http://www.uniprot.org/uniprot/P06564 P06564]
 +
** [http://www.uniprot.org/uniprot/Q45532 Q45532]
 +
** [http://www.uniprot.org/uniprot/P07983 P07983]
 +
** [http://www.uniprot.org/uniprot/P07981 P07981]
 +
** [http://www.uniprot.org/uniprot/P06566 P06566]
 +
** [http://www.uniprot.org/uniprot/P07984 P07984]
 +
</div>
 +
{{#set: ec-number=ec-3.2.1.4}}
 +
{{#set: direction=left-to-right}}
 +
{{#set: common-name=glycoside hydrolase|glycosyl hydrolase family 5|endo-1,4-beta-glucanase|endoglucanase|cellulase|carbohydrate-binding protein}}
 +
{{#set: nb gene associated=15}}
 +
{{#set: nb pathway associated=1}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 +
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=fibrobacter_succinogenes2|fibrobacter_succinogenes1}}

Latest revision as of 11:18, 17 October 2022

Reaction RXN-2043

  • ec-number:
  • direction:
    • left-to-right
  • common-name:
    • endoglucanase
    • cellulase
    • glycosyl hydrolase family 5
    • endo-1,4-beta-glucanase
    • glycoside hydrolase
    • carbohydrate-binding protein

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6788, cellulose degradation II (fungi):
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=RXN-2043&oldid=93101"