Difference between revisions of "RXN-14386"

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(Created page with "Category:reaction == Reaction RXN-16649 == * ec-number: ** [http://enzyme.expasy.org/EC/3.4.16.4 ec-3.4.16.4] * direction: ** left-to-right * common-name: ** d-alanyl-d-al...")
(Created page with "Category:reaction == Reaction RXN-14386 == * ec-number: ** [http://enzyme.expasy.org/EC/2.8.1 ec-2.8.1] * direction: ** left-to-right == Reaction formula == * 1 S-CD-S-S...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction RXN-16649 ==
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== Reaction RXN-14386 ==
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/3.4.16.4 ec-3.4.16.4]
+
** [http://enzyme.expasy.org/EC/2.8.1 ec-2.8.1]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
* common-name:
 
** d-alanyl-d-alanine carboxypeptidase/d-alanyl-d-alanine-endopeptidase
 
** penicillin-binding protein 2
 
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[CPD-17927]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-17926]][c] '''+''' 1 [[D-ALANINE]][c]
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* 1 [[S-CD-S-SP-Complex]][c] '''=>''' 1 [[CD-2S-SP-Complex]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[FISUC_RS08120]]
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* Gene: [[FSU_RS04105]]
** Category: [[annotation]]
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** Category: [[manual]]
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** Source: [[add_expert_reactions]], Tool: [[unknown-tool]], Assignment: n.a, Comment: added to improve flux in sugars
* Gene: [[FISUC_RS09490]]
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* Gene: [[FSU_RS07165]]
** Category: [[annotation]]
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** Category: [[manual]]
*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** Source: [[add_expert_reactions]], Tool: [[unknown-tool]], Assignment: n.a, Comment: added to improve flux in sugars
* Gene: [[FSU_RS11430]]
 
** Category: [[annotation]]
 
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[FSU_RS10050]]
 
** Category: [[annotation]]
 
*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[PWY0-1586]], peptidoglycan maturation (meso-diaminopimelate containing):
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* [[PWY-7250]], [2Fe-2S] iron-sulfur cluster biosynthesis:
** '''4''' reactions found over '''12''' reactions in the full pathway
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** '''4''' reactions found over '''10''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[annotation]]; source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[manual]]; source: [[add_expert_reactions]]; tool: [[curation]]; comment: present in the annotation part in the first version of the fibrobacter gem
* category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
{{#set: ec-number=ec-3.4.16.4}}
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{{#set: ec-number=ec-2.8.1}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: common-name=penicillin-binding protein 2|d-alanyl-d-alanine carboxypeptidase/d-alanyl-d-alanine-endopeptidase}}
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{{#set: nb gene associated=2}}
{{#set: nb gene associated=4}}
 
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
{{#set: reconstruction category=annotation}}
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{{#set: reconstruction category=manual}}
{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction tool=curation}}
{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction comment=present in the annotation part in the first version of the fibrobacter gem}}
{{#set: reconstruction source=fibrobacter_succinogenes2|fibrobacter_succinogenes1}}
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{{#set: reconstruction source=add_expert_reactions}}

Latest revision as of 11:18, 17 October 2022

Reaction RXN-14386

  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7250, [2Fe-2S] iron-sulfur cluster biosynthesis:
    • 4 reactions found over 10 reactions in the full pathway

Reconstruction information

External links