Difference between revisions of "FSU RS00960"

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(Created page with "Category:gene == Gene FSU_RS00725 == * transcription-direction: ** negative * centisome-position: ** 4.459298 * left-end-position: ** 171371 * right-end-position: ** 1...")
(Created page with "Category:gene == Gene FSU_RS00960 == * common-name: ** carb * transcription-direction: ** positive * centisome-position: ** 5.895674 * left-end-position: ** 226571 * r...")
 
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene FSU_RS00725 ==
+
== Gene FSU_RS00960 ==
 +
* common-name:
 +
** carb
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* centisome-position:
 
* centisome-position:
−
** 4.459298    
+
** 5.895674    
 
* left-end-position:
 
* left-end-position:
−
** 171371
+
** 226571
 
* right-end-position:
 
* right-end-position:
−
** 172369
+
** 229834
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[fsucgem]]
 
* [[fsucgem]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[F16ALDOLASE-RXN]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[CARBPSYN-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-8631]]
 
−
** Category: [[manual]]
 
−
*** source: [[add_expert_reactions]]; tool: [[unknown-tool]]; comment: added to improve flux in sugars
 
−
* [[SEDOBISALDOL-RXN]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
*** source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 +
*** source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
*** source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
*** source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 +
*** source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
*** source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
*** source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 +
* [[GLUTAMIN-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-13202]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-14196]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-16909]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-16910]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
</div>
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[PWY-1861]]
+
* [[PWY-5686]]
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7790]]
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-5154]]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[ARGSYN-PWY]]
 +
** '''5''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7400]]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7791]]
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
* [[ARGSYNBSUB-PWY]]
 
** '''9''' reactions found over '''9''' reactions in the full pathway
 
** '''9''' reactions found over '''9''' reactions in the full pathway
−
* [[P185-PWY]]
+
* [[PWY490-4]]
−
** '''10''' reactions found over '''12''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-1042]]
+
* [[PWY-5921]]
−
** '''8''' reactions found over '''10''' reactions in the full pathway
+
** '''4''' reactions found over '''4''' reactions in the full pathway
−
* [[SUCSYN-PWY]]
+
* [[CITRULBIO-PWY]]
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
** '''8''' reactions found over '''8''' reactions in the full pathway
−
* [[ANAGLYCOLYSIS-PWY]]
+
* [[GLUTAMINDEG-PWY]]
−
** '''10''' reactions found over '''11''' reactions in the full pathway
+
** '''1''' reactions found over '''1''' reactions in the full pathway
−
* [[CALVIN-PWY]]
+
* [[PWY-4984]]
−
** '''11''' reactions found over '''13''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
−
* [[GLYCOLYSIS]]
+
* [[PWY-7693]]
−
** '''11''' reactions found over '''12''' reactions in the full pathway
+
** '''3''' reactions found over '''13''' reactions in the full pathway
−
* [[PWY66-399]]
+
* [[PWY0-41]]
−
** '''11''' reactions found over '''12''' reactions in the full pathway
 
−
* [[P341-PWY]]
 
−
** '''6''' reactions found over '''10''' reactions in the full pathway
 
−
* [[GLUCONEO-PWY]]
 
−
** '''13''' reactions found over '''13''' reactions in the full pathway
 
−
* [[PWY-6142]]
 
−
** '''10''' reactions found over '''13''' reactions in the full pathway
 
−
* [[PWY-5484]]
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-7385]]
 
−
** '''5''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY66-373]]
 
 
** '''2''' reactions found over '''5''' reactions in the full pathway
 
** '''2''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY0-1517]]
+
* [[CITRULLINE-DEG-PWY]]
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
 
</div>
 
</div>
−
{{#set: transcription-direction=negative}}
+
{{#set: common-name=carb}}
−
{{#set: centisome-position=4.459298   }}
+
{{#set: transcription-direction=positive}}
−
{{#set: left-end-position=171371}}
+
{{#set: centisome-position=5.895674   }}
−
{{#set: right-end-position=172369}}
+
{{#set: left-end-position=226571}}
 +
{{#set: right-end-position=229834}}
 
{{#set: organism associated=fsucgem}}
 
{{#set: organism associated=fsucgem}}
−
{{#set: nb reaction associated=3}}
+
{{#set: nb reaction associated=6}}
 
{{#set: nb pathway associated=15}}
 
{{#set: nb pathway associated=15}}

Latest revision as of 11:21, 17 October 2022

Gene FSU_RS00960

  • common-name:
    • carb
  • transcription-direction:
    • positive
  • centisome-position:
    • 5.895674
  • left-end-position:
    • 226571
  • right-end-position:
    • 229834

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-5686
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-7790
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-5154
    • 7 reactions found over 9 reactions in the full pathway
  • ARGSYN-PWY
    • 5 reactions found over 4 reactions in the full pathway
  • PWY-7400
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-7791
    • 5 reactions found over 6 reactions in the full pathway
  • ARGSYNBSUB-PWY
    • 9 reactions found over 9 reactions in the full pathway
  • PWY490-4
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-5921
    • 4 reactions found over 4 reactions in the full pathway
  • CITRULBIO-PWY
    • 8 reactions found over 8 reactions in the full pathway
  • GLUTAMINDEG-PWY
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-4984
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-7693
    • 3 reactions found over 13 reactions in the full pathway
  • PWY0-41
    • 2 reactions found over 5 reactions in the full pathway
  • CITRULLINE-DEG-PWY
    • 3 reactions found over 3 reactions in the full pathway





Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS00960&oldid=94638"