Difference between revisions of "FISUC RS02920"

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(Created page with "Category:reaction == Reaction BRANCHED-CHAINAMINOTRANSFERILEU-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.6.1.42 ec-2.6.1.42] * direction: ** reversible * common...")
(Created page with "Category:reaction == Reaction DAHPSYN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.5.1.54 ec-2.5.1.54] * direction: ** reversible == Reaction formula == * 1 ERY...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction BRANCHED-CHAINAMINOTRANSFERILEU-RXN ==
+
== Reaction DAHPSYN-RXN ==
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.6.1.42 ec-2.6.1.42]
+
** [http://enzyme.expasy.org/EC/2.5.1.54 ec-2.5.1.54]
 
* direction:
 
* direction:
 
** reversible
 
** reversible
−
* common-name:
 
−
** branched-chain amino acid aminotransferase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[ILE]][c] '''<=>''' 1 [[2-KETO-3-METHYL-VALERATE]][c] '''+''' 1 [[GLT]][c]
+
* 1 [[ERYTHROSE-4P]][c] '''+''' 1 [[PHOSPHO-ENOL-PYRUVATE]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[3-DEOXY-D-ARABINO-HEPTULOSONATE-7-P]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[FSU_RS05135]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[FISUC_RS03245]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5103]], L-isoleucine biosynthesis III:
+
* [[PWY-6164]], 3-dehydroquinate biosynthesis I:
−
** '''4''' reactions found over '''7''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
* [[ILEUSYN-PWY]], L-isoleucine biosynthesis I (from threonine):
 
−
** '''4''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-5104]], L-isoleucine biosynthesis IV:
 
−
** '''3''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-5108]], L-isoleucine biosynthesis V:
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-5101]], L-isoleucine biosynthesis II:
 
−
** '''3''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-5078]], L-isoleucine degradation II:
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[ILEUDEG-PWY]], L-isoleucine degradation I:
 
−
** '''1''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
+
* category: [[manual]]; source: [[reactions_add_gp]]; tool: [[curation]]; comment: added for gap-filling
−
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24804 24804]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14720 14720]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02199 R02199]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01826 R01826]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q9PIM6 Q9PIM6]
+
** [http://www.uniprot.org/uniprot/P0A1B5 P0A1B5]
−
** [http://www.uniprot.org/uniprot/P38891 P38891]
+
** [http://www.uniprot.org/uniprot/Q9JSQ8 Q9JSQ8]
−
** [http://www.uniprot.org/uniprot/P47176 P47176]
+
** [http://www.uniprot.org/uniprot/P00887 P00887]
−
** [http://www.uniprot.org/uniprot/O86505 O86505]
+
** [http://www.uniprot.org/uniprot/P0AB91 P0AB91]
−
** [http://www.uniprot.org/uniprot/O14370 O14370]
+
** [http://www.uniprot.org/uniprot/P00888 P00888]
−
** [http://www.uniprot.org/uniprot/O32954 O32954]
+
** [http://www.uniprot.org/uniprot/Q9PPJ1 Q9PPJ1]
−
** [http://www.uniprot.org/uniprot/P0AB80 P0AB80]
+
** [http://www.uniprot.org/uniprot/P46245 P46245]
−
{{#set: ec-number=ec-2.6.1.42}}
+
** [http://www.uniprot.org/uniprot/P35170 P35170]
 +
** [http://www.uniprot.org/uniprot/P44303 P44303]
 +
** [http://www.uniprot.org/uniprot/P34725 P34725]
 +
** [http://www.uniprot.org/uniprot/P39912 P39912]
 +
** [http://www.uniprot.org/uniprot/P14843 P14843]
 +
** [http://www.uniprot.org/uniprot/Q02285 Q02285]
 +
** [http://www.uniprot.org/uniprot/P32449 P32449]
 +
** [http://www.uniprot.org/uniprot/P37215 P37215]
 +
** [http://www.uniprot.org/uniprot/P37216 P37216]
 +
** [http://www.uniprot.org/uniprot/Q09755 Q09755]
 +
** [http://www.uniprot.org/uniprot/Q00218 Q00218]
 +
** [http://www.uniprot.org/uniprot/P29976 P29976]
 +
** [http://www.uniprot.org/uniprot/Q42921 Q42921]
 +
** [http://www.uniprot.org/uniprot/O22407 O22407]
 +
** [http://www.uniprot.org/uniprot/O52798 O52798]
 +
</div>
 +
{{#set: ec-number=ec-2.5.1.54}}
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: common-name=branched-chain amino acid aminotransferase}}
+
{{#set: nb gene associated=0}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb pathway associated=1}}
−
{{#set: nb pathway associated=7}}
+
{{#set: reconstruction category=manual}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction tool=curation}}
−
{{#set: reconstruction tool=orthofinder|pathwaytools}}
+
{{#set: reconstruction comment=added for gap-filling}}
−
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction source=reactions_add_gp}}
−
{{#set: reconstruction source=genome|bthetaiotaomicron|ecoli|bifidobacterium|plantarum|faecalibacterium}}
 

Revision as of 07:15, 24 September 2020

Reaction DAHPSYN-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6164, 3-dehydroquinate biosynthesis I:
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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