Difference between revisions of "RXN-17824"

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(Created page with "== description == == Automatic reconstruction with [http://aureme.genouest.org AuReMe] == Model summary: summary Download '''AuReMe''' Input/Output [LI...")
(Created page with "Category:reaction == Reaction RXN-17824 == * ec-number: ** [http://enzyme.expasy.org/EC/2.1.1.63 ec-2.1.1.63] * direction: ** left-to-right * common-name: ** methylated-dn...")
 
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== description ==
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[[Category:reaction]]
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== Automatic reconstruction with [http://aureme.genouest.org AuReMe] ==
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== Reaction RXN-17824 ==
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Model summary: [[MEDIA:summary.txt|summary]]
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* ec-number:
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** [http://enzyme.expasy.org/EC/2.1.1.63 ec-2.1.1.63]
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Download '''AuReMe''' Input/Output [LINK OR MEDIA data]
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* direction:
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** left-to-right
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The automatic reconstruction of ''Fibrobacter succinogenes'' results to a Genome scale [[MEDIA:model.xml|Model]] containing 1567 reactions, 1588 metabolites, 1314 genes and 931 pathways. This GeM was obtained based on the following sources:
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* common-name:
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* Based on annotation data:
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** methylated-dna--[protein]-cysteine s-methyltransferase
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** Creation of a metabolic network containing 826 reactions
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== Reaction formula ==
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* Based on orthology data:
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* 1 [[CPD-19186]][c] '''+''' 1 [[PROT-CYS]][c] '''=>''' 1 [[Protein-S-methyl-L-cysteine]][c] '''+''' 1 [[a-thymine-in-DNA]][c]
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** Creation of a global metabolic network containing 377 reactions
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== Gene(s) associated with this reaction  ==
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* Based on expertise:
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* Gene: [[FSU_RS01115]]
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** 568 reaction(s) added
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** Category: [[annotation]]
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*** Source: [[fibrobacter_succinogenes1]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
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*List of tools used:
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* Gene: [[FISUC_RS14925]]
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** Tool: [http://bioinformatics.ai.sri.com/ptools/ PathwayTools]
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** Category: [[annotation]]
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** Tool: [https://github.com/davidemms/OrthoFinder Orthofinder]
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*** Source: [[fibrobacter_succinogenes2]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
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** Tool: [https://pypi.python.org/pypi/meneco meneco]
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== Pathway(s)  ==
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== Reconstruction information  ==
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[[FILE:venn.png|frameless|border]]
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* category: [[annotation]]; source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[annotation]]; source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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== Collaborative curation ==  
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== External links  ==
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* Suggest reactions to add or remove:
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* RHEA:
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** Download this [[MEDIA:Add_delete_reaction.csv|form]]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=53429 53429]
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* Suggest new reactions to create and add:
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{{#set: ec-number=ec-2.1.1.63}}
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** Download this [[MEDIA:Reaction_creator.csv|form]]
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{{#set: direction=left-to-right}}
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* '''Follow the examples given in the form(s) to correctly share your suggestions'''
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{{#set: common-name=methylated-dna--[protein]-cysteine s-methyltransferase}}
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* Send the filled form(s) to: gem-aureme[at]inria.fr
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{{#set: nb gene associated=2}}
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{{#set: nb pathway associated=0}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=fibrobacter_succinogenes2|fibrobacter_succinogenes1}}

Latest revision as of 11:18, 17 October 2022

Reaction RXN-17824

  • ec-number:
  • direction:
    • left-to-right
  • common-name:
    • methylated-dna--[protein]-cysteine s-methyltransferase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links


Property "Common-name" (as page type) with input value "methylated-dna--[protein]-cysteine s-methyltransferase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.




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