Difference between revisions of "RXN-17824"

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(Created page with "== description == == Automatic reconstruction with [http://aureme.genouest.org AuReMe] == Model summary: summary Download '''AuReMe''' Input/Output [LI...")
(Created page with "Category:reaction == Reaction RXN1G-469 == * common-name: ** 3-oxobehenoyl-[acyl-carrier protein] reductase ** 3-oxoacyl-acp reductase fabg ** 3-oxoacyl-[acyl-carrier-prot...")
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== description ==
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[[Category:reaction]]
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== Automatic reconstruction with [http://aureme.genouest.org AuReMe] ==
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== Reaction RXN1G-469 ==
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Model summary: [[MEDIA:summary.txt|summary]]
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* common-name:
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** 3-oxobehenoyl-[acyl-carrier protein] reductase
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Download '''AuReMe''' Input/Output [LINK OR MEDIA data]
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** 3-oxoacyl-acp reductase fabg
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** 3-oxoacyl-[acyl-carrier-protein] reductase
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The automatic reconstruction of ''Fibrobacter succinogenes'' results to a Genome scale [[MEDIA:model.xml|Model]] containing 1567 reactions, 1588 metabolites, 1314 genes and 931 pathways. This GeM was obtained based on the following sources:
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* ec-number:
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* Based on annotation data:
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** [http://enzyme.expasy.org/EC/1.1.1.100 ec-1.1.1.100]
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** Creation of a metabolic network containing 826 reactions
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* direction:
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* Based on orthology data:
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** left-to-right
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** Creation of a global metabolic network containing 377 reactions
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== Reaction formula ==
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* Based on expertise:
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* 1 [[3-oxo-behenoyl-ACPs]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[R-3-hydroxybehenoyl-ACPs]][c]
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** 568 reaction(s) added
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== Gene(s) associated with this reaction  ==
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* Gene: [[FSU_RS12065]]
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*List of tools used:
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** Category: [[annotation]]
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** Tool: [http://bioinformatics.ai.sri.com/ptools/ PathwayTools]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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** Tool: [https://github.com/davidemms/OrthoFinder Orthofinder]
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* Gene: [[FSU_RS01260]]
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** Tool: [https://pypi.python.org/pypi/meneco meneco]
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** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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[[FILE:venn.png|frameless|border]]
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* Gene: [[FISUC_RS15070]]
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** Category: [[annotation]]
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== Collaborative curation ==
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* Suggest reactions to add or remove:
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* Gene: [[FISUC_RS10110]]
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** Download this [[MEDIA:Add_delete_reaction.csv|form]]
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** Category: [[annotation]]
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* Suggest new reactions to create and add:
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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** Download this [[MEDIA:Reaction_creator.csv|form]]
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== Pathway(s)  ==
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* '''Follow the examples given in the form(s) to correctly share your suggestions'''
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* [[PWYG-321]], mycolate biosynthesis:
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* Send the filled form(s) to: gem-aureme[at]inria.fr
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** '''12''' reactions found over '''182''' reactions in the full pathway
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== Reconstruction information  ==
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* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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== External links  ==
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{{#set: common-name=3-oxoacyl-[acyl-carrier-protein] reductase|3-oxoacyl-acp reductase fabg|3-oxobehenoyl-[acyl-carrier protein] reductase}}
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{{#set: ec-number=ec-1.1.1.100}}
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{{#set: direction=left-to-right}}
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{{#set: nb gene associated=4}}
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{{#set: nb pathway associated=1}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=genome}}

Revision as of 18:07, 26 April 2021

Reaction RXN1G-469

  • common-name:
    • 3-oxobehenoyl-[acyl-carrier protein] reductase
    • 3-oxoacyl-acp reductase fabg
    • 3-oxoacyl-[acyl-carrier-protein] reductase
  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWYG-321, mycolate biosynthesis:
    • 12 reactions found over 182 reactions in the full pathway

Reconstruction information

External links

  • Property "Common-name" (as page type) with input value "3-oxoacyl-[acyl-carrier-protein] reductase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
  • Property "Common-name" (as page type) with input value "3-oxobehenoyl-[acyl-carrier protein] reductase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.





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