Difference between revisions of "RXN-8768"

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(Created page with "Category:reaction == Reaction ATPSYN-RXN == * direction: ** reversible * common-name: ** atp synthase f1 subunit gamma ** f0f1 atp synthase subunit a ** atp synthase f0 su...")
 
(Created page with "Category:reaction == Reaction TRYPSYN-RXN == * direction: ** left-to-right * common-name: ** tryptophan synthase subunit beta * ec-number: ** [http://enzyme.expasy.org/EC/...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ATPSYN-RXN ==
+
== Reaction TRYPSYN-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** atp synthase f1 subunit gamma
+
** tryptophan synthase subunit beta
−
** f0f1 atp synthase subunit a
 
−
** atp synthase f0 subunit b
 
−
** atp synthase f0 subunit c
 
−
** atp synthase f1 subunit epsilon
 
−
** f0f1 atp synthase subunit beta
 
−
** f0f1 atp synthase subunit alpha
 
−
** v-type atp synthase subunit i
 
−
** v-type atp synthase subunit f
 
−
** h+-transporting two-sector atpase subunit e
 
−
** v-type atp synthase subunit k
 
−
** v-type atp synthase subunit d
 
−
** v-type atp synthase subunit b
 
−
** v-type atp synthase subunit a
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.6.3.14 ec-3.6.3.14]
+
** [http://enzyme.expasy.org/EC/4.2.1.20 ec-4.2.1.20]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ADP]][c] '''+''' 4 [[PROTON]][e] '''+''' 1 [[Pi]][c] '''<=>''' 1 [[ATP]][c] '''+''' 3 [[PROTON]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[INDOLE-3-GLYCEROL-P]][c] '''+''' 1 [[SER]][c] '''=>''' 1 [[GAP]][c] '''+''' 1 [[TRP]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[RUMFLAFD1_RS0112385]]
−
* Gene: [[RUMFLAFD1_RS0107500]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** Source: [[output_pantograph_bifidobacteriumadolescentisl2-32]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
+
*** Source: [[output_pantograph_ecoli]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[RUMFLAFD1_RS0107510]]
+
*** Source: [[output_pantograph_bthetaiotaomicron_heinken2013]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
** Category: [[annotation]]
+
*** Source: [[output_pantograph_l_plantarum_wcfs1]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
+
* Gene: [[RUMFLAFD1_RS0112380]]
−
* Gene: [[RUMFLAFD1_RS0106665]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
−
* Gene: [[RUMFLAFD1_RS0107530]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
−
* Gene: [[RUMFLAFD1_RS0108910]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
−
* Gene: [[RUMFLAFD1_RS0108905]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
−
* Gene: [[RUMFLAFD1_RS0108930]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
−
* Gene: [[RUMFLAFD1_RS0108900]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
−
* Gene: [[RUMFLAFD1_RS0108915]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
−
* Gene: [[RUMFLAFD1_RS0107515]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
−
* Gene: [[RUMFLAFD1_RS0107505]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
−
* Gene: [[RUMFLAFD1_RS0107525]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
−
* Gene: [[RUMFLAFD1_RS0106670]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
−
* Gene: [[RUMFLAFD1_RS0108925]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
−
* Gene: [[RUMFLAFD1_RS0106680]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
−
* Gene: [[RUMFLAFD1_RS0106675]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
−
* Gene: [[RUMFLAFD1_RS0108935]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
−
* Gene: [[RUMFLAFD1_RS0107535]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
−
* Gene: [[RUMFLAFD1_RS0106685]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
*** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
−
* Gene: [[RUMFLAFD1_RS0108920]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** Source: [[output_pantograph_bifidobacteriumadolescentisl2-32]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
+
*** Source: [[output_pantograph_ecoli]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
</div>
+
*** Source: [[output_pantograph_bthetaiotaomicron_heinken2013]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_l_plantarum_wcfs1]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7219]], adenosine ribonucleotides de novo biosynthesis:
 
−
** '''4''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_bthetaiotaomicron_heinken2013]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_bifidobacteriumadolescentisl2-32]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[genome_a]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[genome_a]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_l_plantarum_wcfs1]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ecoli]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10533 10533]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00086 R00086]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02722 R02722]
−
* RHEA:
+
* UNIPROT:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20855 20855]
+
** [http://www.uniprot.org/uniprot/P11081 P11081]
−
{{#set: direction=reversible}}
+
** [http://www.uniprot.org/uniprot/P14671 P14671]
−
{{#set: common-name=h+-transporting two-sector atpase subunit e|atp synthase f0 subunit c|v-type atp synthase subunit a|v-type atp synthase subunit b|atp synthase f0 subunit b|f0f1 atp synthase subunit a|atp synthase f1 subunit epsilon|atp synthase f1 subunit gamma|v-type atp synthase subunit f|v-type atp synthase subunit d|v-type atp synthase subunit k|f0f1 atp synthase subunit alpha|f0f1 atp synthase subunit beta|v-type atp synthase subunit i}}
+
** [http://www.uniprot.org/uniprot/P13228 P13228]
−
{{#set: ec-number=ec-3.6.3.14}}
+
** [http://www.uniprot.org/uniprot/P18284 P18284]
−
{{#set: nb gene associated=20}}
+
** [http://www.uniprot.org/uniprot/P43759 P43759]
−
{{#set: nb pathway associated=1}}
+
** [http://www.uniprot.org/uniprot/O84172 O84172]
−
{{#set: reconstruction category=annotation}}
+
** [http://www.uniprot.org/uniprot/P11080 P11080]
−
{{#set: reconstruction tool=pathwaytools}}
+
** [http://www.uniprot.org/uniprot/P16608 P16608]
 +
** [http://www.uniprot.org/uniprot/P18285 P18285]
 +
** [http://www.uniprot.org/uniprot/P16706 P16706]
 +
** [http://www.uniprot.org/uniprot/P12290 P12290]
 +
** [http://www.uniprot.org/uniprot/P42391 P42391]
 +
** [http://www.uniprot.org/uniprot/Q9PIF2 Q9PIF2]
 +
** [http://www.uniprot.org/uniprot/P12291 P12291]
 +
** [http://www.uniprot.org/uniprot/P42389 P42389]
 +
** [http://www.uniprot.org/uniprot/Q60179 Q60179]
 +
** [http://www.uniprot.org/uniprot/Q9PIF1 Q9PIF1]
 +
** [http://www.uniprot.org/uniprot/P07600 P07600]
 +
** [http://www.uniprot.org/uniprot/P07601 P07601]
 +
** [http://www.uniprot.org/uniprot/P06561 P06561]
 +
** [http://www.uniprot.org/uniprot/P56142 P56142]
 +
** [http://www.uniprot.org/uniprot/P06562 P06562]
 +
** [http://www.uniprot.org/uniprot/O27696 O27696]
 +
** [http://www.uniprot.org/uniprot/O28672 O28672]
 +
** [http://www.uniprot.org/uniprot/O66923 O66923]
 +
** [http://www.uniprot.org/uniprot/Q9JVC0 Q9JVC0]
 +
** [http://www.uniprot.org/uniprot/P43760 P43760]
 +
** [http://www.uniprot.org/uniprot/P34817 P34817]
 +
** [http://www.uniprot.org/uniprot/P34816 P34816]
 +
** [http://www.uniprot.org/uniprot/P17167 P17167]
 +
** [http://www.uniprot.org/uniprot/P17166 P17166]
 +
** [http://www.uniprot.org/uniprot/P19868 P19868]
 +
** [http://www.uniprot.org/uniprot/P19867 P19867]
 +
** [http://www.uniprot.org/uniprot/P16578 P16578]
 +
** [http://www.uniprot.org/uniprot/P43283 P43283]
 +
** [http://www.uniprot.org/uniprot/P43284 P43284]
 +
** [http://www.uniprot.org/uniprot/Q57011 Q57011]
 +
** [http://www.uniprot.org/uniprot/P31204 P31204]
 +
** [http://www.uniprot.org/uniprot/Q01998 Q01998]
 +
** [http://www.uniprot.org/uniprot/Q01997 Q01997]
 +
** [http://www.uniprot.org/uniprot/P34793 P34793]
 +
** [http://www.uniprot.org/uniprot/P42390 P42390]
 +
** [http://www.uniprot.org/uniprot/P50909 P50909]
 +
** [http://www.uniprot.org/uniprot/Q42529 Q42529]
 +
** [http://www.uniprot.org/uniprot/P51382 P51382]
 +
** [http://www.uniprot.org/uniprot/P77960 P77960]
 +
** [http://www.uniprot.org/uniprot/Q59992 Q59992]
 +
** [http://www.uniprot.org/uniprot/O22765 O22765]
 +
** [http://www.uniprot.org/uniprot/O04225 O04225]
 +
** [http://www.uniprot.org/uniprot/P25269 P25269]
 +
** [http://www.uniprot.org/uniprot/O64991 O64991]
 +
** [http://www.uniprot.org/uniprot/O05625 O05625]
 +
** [http://www.uniprot.org/uniprot/O13831 O13831]
 +
** [http://www.uniprot.org/uniprot/Q9YGB0 Q9YGB0]
 +
** [http://www.uniprot.org/uniprot/Q9YGA9 Q9YGA9]
 +
** [http://www.uniprot.org/uniprot/Q9X7C8 Q9X7C8]
 +
** [http://www.uniprot.org/uniprot/P00931 P00931]
 +
** [http://www.uniprot.org/uniprot/P00929 P00929]
 +
** [http://www.uniprot.org/uniprot/P0A2K1 P0A2K1]
 +
** [http://www.uniprot.org/uniprot/P0A877 P0A877]
 +
** [http://www.uniprot.org/uniprot/P0A879 P0A879]
 +
</div>
 +
{{#set: direction=left-to-right}}
 +
{{#set: common-name=tryptophan synthase subunit beta}}
 +
{{#set: ec-number=ec-4.2.1.20}}
 +
{{#set: nb gene associated=2}}
 +
{{#set: nb pathway associated=0}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=genome_a}}
+
{{#set: reconstruction source=genome_a|output_pantograph_bifidobacteriumadolescentisl2-32|output_pantograph_ecoli|output_pantograph_l_plantarum_wcfs1|output_pantograph_bthetaiotaomicron_heinken2013}}

Revision as of 18:51, 23 November 2020

Reaction TRYPSYN-RXN

  • direction:
    • left-to-right
  • common-name:
    • tryptophan synthase subunit beta
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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