Difference between revisions of "TRANS-RXN-1"

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(Created page with "Category:reaction == Reaction ASPARTATE--TRNA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** aspartate--trna ligase * ec-number: ** [http://enzyme.expasy.or...")
 
(Created page with "Category:reaction == Reaction RXN-9929 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.3.98.1 ec-1.3.98.1] == Reaction formula == * 1 DI-...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ASPARTATE--TRNA-LIGASE-RXN ==
+
== Reaction RXN-9929 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** aspartate--trna ligase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.1.1.12 ec-6.1.1.12]
+
** [http://enzyme.expasy.org/EC/1.3.98.1 ec-1.3.98.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ASP-tRNAs]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[L-ASPARTATE]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-ASP-tRNAs]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[DI-H-OROTATE]][c] '''+''' 1 [[FUM]][c] '''=>''' 1 [[OROTATE]][c] '''+''' 1 [[SUC]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[RUMFLAFD1_RS0107565]]
+
* Gene: [[RUMFLAFD1_RS0103355]]
−
** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
+
*** Source: [[output_pantograph_faecalibacteriumprausnitziia2-165_heinken2014]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_bthetaiotaomicron_heinken2013]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[RUMFLAFD1_RS0103360]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_faecalibacteriumprausnitziia2-165_heinken2014]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_bthetaiotaomicron_heinken2013]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging:
+
* [[PWY-7790]], UMP biosynthesis II:
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
** '''6''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[genome_a]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_faecalibacteriumprausnitziia2-165_heinken2014]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_bthetaiotaomicron_heinken2013]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19650 19650]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30062 30062]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P74782 P74782]
 +
** [http://www.uniprot.org/uniprot/Q63707 Q63707]
 +
** [http://www.uniprot.org/uniprot/Q48240 Q48240]
 +
** [http://www.uniprot.org/uniprot/P32746 P32746]
 +
** [http://www.uniprot.org/uniprot/Q02127 Q02127]
 +
** [http://www.uniprot.org/uniprot/P32748 P32748]
 +
** [http://www.uniprot.org/uniprot/P28294 P28294]
 +
** [http://www.uniprot.org/uniprot/P28272 P28272]
 +
** [http://www.uniprot.org/uniprot/P46539 P46539]
 +
** [http://www.uniprot.org/uniprot/Q9CFC9 Q9CFC9]
 +
** [http://www.uniprot.org/uniprot/P25996 P25996]
 +
** [http://www.uniprot.org/uniprot/Q58070 Q58070]
 +
** [http://www.uniprot.org/uniprot/P0A7E1 P0A7E1]
 +
** [http://www.uniprot.org/uniprot/Q9JX66 Q9JX66]
 +
** [http://www.uniprot.org/uniprot/Q9PPB6 Q9PPB6]
 +
** [http://www.uniprot.org/uniprot/Q9CFW8 Q9CFW8]
 +
** [http://www.uniprot.org/uniprot/P45477 P45477]
 +
** [http://www.uniprot.org/uniprot/P32747 P32747]
 +
** [http://www.uniprot.org/uniprot/P07670 P07670]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R05577 R05577]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01867 R01867]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P56459 P56459]
 
−
** [http://www.uniprot.org/uniprot/O26328 O26328]
 
−
** [http://www.uniprot.org/uniprot/O83950 O83950]
 
−
** [http://www.uniprot.org/uniprot/Q58950 Q58950]
 
−
** [http://www.uniprot.org/uniprot/Q9ZLL9 Q9ZLL9]
 
−
** [http://www.uniprot.org/uniprot/O32038 O32038]
 
−
** [http://www.uniprot.org/uniprot/O67589 O67589]
 
−
** [http://www.uniprot.org/uniprot/P43817 P43817]
 
−
** [http://www.uniprot.org/uniprot/O51402 O51402]
 
−
** [http://www.uniprot.org/uniprot/Q9CE80 Q9CE80]
 
−
** [http://www.uniprot.org/uniprot/Q9ZE17 Q9ZE17]
 
−
** [http://www.uniprot.org/uniprot/Q9X1F4 Q9X1F4]
 
−
** [http://www.uniprot.org/uniprot/Q9JT23 Q9JT23]
 
−
** [http://www.uniprot.org/uniprot/O58776 O58776]
 
−
** [http://www.uniprot.org/uniprot/O84546 O84546]
 
−
** [http://www.uniprot.org/uniprot/Q9Z7P2 Q9Z7P2]
 
−
** [http://www.uniprot.org/uniprot/Q9PHM7 Q9PHM7]
 
−
** [http://www.uniprot.org/uniprot/P47282 P47282]
 
−
** [http://www.uniprot.org/uniprot/Q51422 Q51422]
 
−
** [http://www.uniprot.org/uniprot/Q03577 Q03577]
 
−
** [http://www.uniprot.org/uniprot/P36429 P36429]
 
−
** [http://www.uniprot.org/uniprot/P75068 P75068]
 
−
** [http://www.uniprot.org/uniprot/P73851 P73851]
 
−
** [http://www.uniprot.org/uniprot/Q48979 Q48979]
 
−
** [http://www.uniprot.org/uniprot/Q49028 Q49028]
 
−
** [http://www.uniprot.org/uniprot/P04802 P04802]
 
−
** [http://www.uniprot.org/uniprot/P15179 P15179]
 
−
** [http://www.uniprot.org/uniprot/P21889 P21889]
 
−
** [http://www.uniprot.org/uniprot/P14868 P14868]
 
−
** [http://www.uniprot.org/uniprot/P15178 P15178]
 
−
** [http://www.uniprot.org/uniprot/O81892 O81892]
 
−
** [http://www.uniprot.org/uniprot/O74407 O74407]
 
−
** [http://www.uniprot.org/uniprot/O07683 O07683]
 
 
</div>
 
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=aspartate--trna ligase}}
+
{{#set: ec-number=ec-1.3.98.1}}
−
{{#set: ec-number=ec-6.1.1.12}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb gene associated=1}}
 
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=genome_a}}
+
{{#set: reconstruction source=output_pantograph_bthetaiotaomicron_heinken2013|output_pantograph_faecalibacteriumprausnitziia2-165_heinken2014}}

Revision as of 18:51, 23 November 2020

Reaction RXN-9929

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7790, UMP biosynthesis II:
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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