|
|
| Line 1: |
Line 1: |
| | [[Category:reaction]] | | [[Category:reaction]] |
| − | == Reaction PRPPAMIDOTRANS-RXN == | + | == Reaction ExchangeSeed-RIBOFLAVIN == |
| | * direction: | | * direction: |
| | ** reversible | | ** reversible |
| − | * common-name:
| |
| − | ** amidophosphoribosyltransferase
| |
| − | * ec-number:
| |
| − | ** [http://enzyme.expasy.org/EC/2.4.2.14 ec-2.4.2.14]
| |
| | == Reaction formula == | | == Reaction formula == |
| − | * 1 [[5-P-BETA-D-RIBOSYL-AMINE]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[PPI]][c] '''<=>''' 1 [[GLN]][c] '''+''' 1 [[PRPP]][c] '''+''' 1 [[WATER]][c] | + | * 1.0 [[RIBOFLAVIN]][C-BOUNDARY] '''<=>''' 1.0 [[RIBOFLAVIN]][e] |
| | == Gene(s) associated with this reaction == | | == Gene(s) associated with this reaction == |
| − | * Gene: [[RUMFLAFD1_RS0116390]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
| |
| − | ** Category: [[orthology]]
| |
| − | *** Source: [[output_pantograph_bifidobacteriumadolescentisl2-32]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | *** Source: [[output_pantograph_ecoli]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | *** Source: [[output_pantograph_l_plantarum_wcfs1]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | * Gene: [[RUMFLAFD1_RS0104660]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[genome_a]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
| |
| − | ** Category: [[orthology]]
| |
| − | *** Source: [[output_pantograph_bthetaiotaomicron_heinken2013]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| | == Pathway(s) == | | == Pathway(s) == |
| − | * [[PWY-6122]], 5-aminoimidazole ribonucleotide biosynthesis II:
| |
| − | ** '''5''' reactions found over '''5''' reactions in the full pathway
| |
| − | * [[PWY-6121]], 5-aminoimidazole ribonucleotide biosynthesis I:
| |
| − | ** '''5''' reactions found over '''5''' reactions in the full pathway
| |
| − | * [[PWY-6277]], superpathway of 5-aminoimidazole ribonucleotide biosynthesis:
| |
| − | ** '''7''' reactions found over '''5''' reactions in the full pathway
| |
| − | * [[PWY-7282]], 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis (yeast):
| |
| − | ** '''5''' reactions found over '''9''' reactions in the full pathway
| |
| | == Reconstruction information == | | == Reconstruction information == |
| − | * category: [[orthology]]; source: [[output_pantograph_bthetaiotaomicron_heinken2013]]; tool: [[pantograph]]; comment: n.a | + | * category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from boundary to extracellular compartment |
| − | * category: [[orthology]]; source: [[output_pantograph_l_plantarum_wcfs1]]; tool: [[pantograph]]; comment: n.a
| |
| − | * category: [[orthology]]; source: [[output_pantograph_ecoli]]; tool: [[pantograph]]; comment: n.a
| |
| − | * category: [[annotation]]; source: [[genome_a]]; tool: [[pathwaytools]]; comment: n.a
| |
| − | * category: [[orthology]]; source: [[output_pantograph_bifidobacteriumadolescentisl2-32]]; tool: [[pantograph]]; comment: n.a
| |
| | == External links == | | == External links == |
| − | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
| |
| − | * RHEA:
| |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14908 14908]
| |
| − | * LIGAND-RXN:
| |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R01072 R01072]
| |
| − | * UNIPROT:
| |
| − | ** [http://www.uniprot.org/uniprot/P28173 P28173]
| |
| − | ** [http://www.uniprot.org/uniprot/P35433 P35433]
| |
| − | ** [http://www.uniprot.org/uniprot/Q06203 Q06203]
| |
| − | ** [http://www.uniprot.org/uniprot/O29388 O29388]
| |
| − | ** [http://www.uniprot.org/uniprot/O67236 O67236]
| |
| − | ** [http://www.uniprot.org/uniprot/P65829 P65829]
| |
| − | ** [http://www.uniprot.org/uniprot/O57979 O57979]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9X0X4 Q9X0X4]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9RXT6 Q9RXT6]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9K0C4 Q9K0C4]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9V253 Q9V253]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9PIT3 Q9PIT3]
| |
| − | ** [http://www.uniprot.org/uniprot/Q57657 Q57657]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9JVC9 Q9JVC9]
| |
| − | ** [http://www.uniprot.org/uniprot/O26742 O26742]
| |
| − | ** [http://www.uniprot.org/uniprot/P43854 P43854]
| |
| − | ** [http://www.uniprot.org/uniprot/P35853 P35853]
| |
| − | ** [http://www.uniprot.org/uniprot/P41390 P41390]
| |
| − | ** [http://www.uniprot.org/uniprot/Q27601 Q27601]
| |
| − | ** [http://www.uniprot.org/uniprot/Q38999 Q38999]
| |
| − | ** [http://www.uniprot.org/uniprot/P04046 P04046]
| |
| − | ** [http://www.uniprot.org/uniprot/Q55621 Q55621]
| |
| − | ** [http://www.uniprot.org/uniprot/Q55038 Q55038]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9STG9 Q9STG9]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9T0J5 Q9T0J5]
| |
| − | ** [http://www.uniprot.org/uniprot/P52418 P52418]
| |
| − | ** [http://www.uniprot.org/uniprot/P52419 P52419]
| |
| − | ** [http://www.uniprot.org/uniprot/Q22134 Q22134]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9ZB05 Q9ZB05]
| |
| − | ** [http://www.uniprot.org/uniprot/P00497 P00497]
| |
| − | ** [http://www.uniprot.org/uniprot/P0AG16 P0AG16]
| |
| − | </div>
| |
| | {{#set: direction=reversible}} | | {{#set: direction=reversible}} |
| − | {{#set: common-name=amidophosphoribosyltransferase}}
| + | {{#set: nb gene associated=0}} |
| − | {{#set: ec-number=ec-2.4.2.14}}
| + | {{#set: nb pathway associated=0}} |
| − | {{#set: nb gene associated=2}} | + | {{#set: reconstruction category=manual}} |
| − | {{#set: nb pathway associated=4}} | + | {{#set: reconstruction tool=curation}} |
| − | {{#set: reconstruction category=orthology|annotation}} | + | {{#set: reconstruction comment=added to manage seeds from boundary to extracellular compartment}} |
| − | {{#set: reconstruction tool=pathwaytools|pantograph}} | + | {{#set: reconstruction source=import_from_medium}} |
| − | {{#set: reconstruction comment=n.a}} | |
| − | {{#set: reconstruction source=output_pantograph_bifidobacteriumadolescentisl2-32|genome_a|output_pantograph_ecoli|output_pantograph_l_plantarum_wcfs1|output_pantograph_bthetaiotaomicron_heinken2013}} | |
