############# Model summary Number of compounds: 3249 Number of reactions: 3348 Number of genes: 5018 Ratio rxn with genes/rxns: 94.92234169653524% ############# Analyzing targets #Topological analysis Number of targets: 50 #Flux Balance Analysis CPD__45__8117_c // CPD-8117_c 0.0 NULL LEU_c // LEU_c 667.9640718562871 positive DOCOSANOATE_c // DOCOSANOATE_c 0.0 NULL CIT_c // CIT_c 1000.0 positive GLC_c // GLC_c 1000.0 positive CPD__45__8120_c // CPD-8120_c 187.5 positive PALMITATE_c // PALMITATE_c 221.37404580152588 positive SER_c // SER_c 1000.0 positive OLEATE__45__CPD_c // OLEATE-CPD_c 205.5555555555554 positive GLT_c // GLT_c 1000.0 positive CPD__45__12653_c // CPD-12653_c 0.0 NULL L__45__ALPHA__45__ALANINE_c // L-ALPHA-ALANINE_c 1000.0 positive LINOLENIC_ACID_c // LINOLENIC_ACID_c 0.0 NULL HIS_c // HIS_c 391.30434782608717 positive ARG_c // ARG_c 342.10526315789497 positive VAL_c // VAL_c 830.5988515176384 positive SUC_c // SUC_c 1000.0 positive PHE_c // PHE_c 691.7330677290835 positive GLUTATHIONE_c // GLUTATHIONE_c 427.24867724867715 positive THREO__45__DS__45__ISO__45__CITRATE_c // THREO-DS-ISO-CITRATE_c 1000.0 positive 5Z8Z11Z14Z17Z__45__EICOSAPENTAENOATE_c // 5Z8Z11Z14Z17Z-EICOSAPENTAENOATE_c 222.22222222222229 positive L__45__ASPARTATE_c // L-ASPARTATE_c 1000.0 positive TYR_c // TYR_c 897.0588235294113 positive LINOLEIC_ACID_c // LINOLEIC_ACID_c 215.11627906976756 positive THR_c // THR_c 1000.0 positive CPD__45__8121_c // CPD-8121_c 0.0 NULL CPD__45__9247_c // CPD-9247_c 0.0 NULL CYS_c // CYS_c 534.7682119205235 positive STEARIC_ACID_c // STEARIC_ACID_c 193.33333333333314 positive HOMO__45__SER_c // HOMO-SER_c 1000.0 positive LYS_c // LYS_c 513.9450282942603 positive ARACHIDONIC_ACID_c // ARACHIDONIC_ACID_c 221.37404580152676 positive TRP_c // TRP_c 437.49999999999994 positive ILE_c // ILE_c 656.4670138888896 positive GLY_c // GLY_c 1000.0 positive CPD__45__9245_c // CPD-9245_c 237.17948717948727 positive 4__45__AMINO__45__BUTYRATE_c // 4-AMINO-BUTYRATE_c 1000.0 positive GLYCOLLATE_c // GLYCOLLATE_c 1000.0 positive ASN_c // ASN_c 1000.0 positive MANNITOL_c // MANNITOL_c 1000.0 positive Eicosadienoates_c // Eicosadienoates_c 0.0 NULL MET_c // MET_c 414.772727272727 positive L__45__ORNITHINE_c // L-ORNITHINE_c 586.0655737704924 positive PRO_c // PRO_c 1000.0000000000002 positive GLYCEROL_c // GLYCEROL_c 1000.0 positive GLN_c // GLN_c 891.304347826087 positive CPD__45__7836_c // CPD-7836_c 258.92857142857144 positive AMMONIUM_c // AMMONIUM_c 955.4565701559028 positive GLYCERATE_c // GLYCERATE_c 1000.0 positive ARACHIDIC_ACID_c // ARACHIDIC_ACID_c 171.59763313609454 positive ############# Computing optimization Testing reaction biomass_rxn Growth rate: 3.672731323159042 Status: optimal IN FLUXES OUT FLUXES OBJECTIVES ------------------ --------------- ----------------- PROTON_e 1e+03 BIOMASS_e 3.67 biomass_rxn 3.67 WATER_e 1e+03 Light_e 500 NITRATE_e 458 SULFATE_e 2.2 FVA analysis: Blocked reactions: 2315 Essential reactions: 44 GLYOXYLATE__45__REDUCTASE__45__NADP__43____45__RXN BRANCHED__45__CHAINAMINOTRANSFERILEU__45__RXN DIHYDROXYISOVALDEHYDRAT__45__RXN Exchange_BIOMASS GLUTAMINESYN__45__RXN DIAMINOPIMDECARB__45__RXN ACETOLACTREDUCTOISOM__45__RXN PRTRANS__45__RXN 3__45__DEHYDROQUINATE__45__SYNTHASE__45__RXN PRAISOM__45__RXN BRANCHED__45__CHAINAMINOTRANSFERLEU__45__RXN biomass_rxn 1__46__1__46__1__46__178__45__RXN HISTPRATPHYD__45__RXN HISTAMINOTRANS__45__RXN CHORISMATE__45__SYNTHASE__45__RXN GLUTDECARBOX__45__RXN ASPARTATE__45__SEMIALDEHYDE__45__DEHYDROGENASE__45__RXN ORNITHINE__45__CYCLODEAMINASE__45__RXN HOMOSERDEHYDROG__45__RXN RXN__45__15115 Transport_BIOMASS BRANCHED__45__CHAINAMINOTRANSFERVAL__45__RXN CHORISMATEMUT__45__RXN METHYLACETOACETYLCOATHIOL__45__RXN HISTCYCLOHYD__45__RXN RXN__45__7790 ANTHRANSYN__45__RXN ASPARTATEKIN__45__RXN RXN__45__13158 SHIKIMATE__45__5__45__DEHYDROGENASE__45__RXN ExchangeSeed__45__SULFATE 2__46__5__46__1__46__19__45__RXN DIHYDRODIPICSYN__45__RXN RXN__45__14014 IMPCYCLOHYDROLASE__45__RXN SHIKIMATE__45__KINASE__45__RXN IGPSYN__45__RXN 3__45__DEHYDROQUINATE__45__DEHYDRATASE__45__RXN 2__45__MEBUCOA__45__FAD__45__RXN ADENYLOSUCCINATE__45__SYNTHASE__45__RXN TransportSeed__45__SULFATE TIGLYLCOA__45__HYDROXY__45__RXN DAHPSYN__45__RXN Essential genes: 23 30/30 compounds with positive flux 0/30 compounds without flux LYS_c // LYS_c 1000.0 positive 4__45__AMINO__45__BUTYRATE_c // 4-AMINO-BUTYRATE_c 1000.0 positive ARG_c // ARG_c 1000.0000000000017 positive MET_c // MET_c 999.9999999999999 positive ASN_c // ASN_c 1000.0000000000001 positive CIT_c // CIT_c 121.02332953292604 positive CYS_c // CYS_c 1000.0 positive GLC_c // GLC_c 1000.0000000000001 positive GLT_c // GLT_c 123.78426171529617 positive GLY_c // GLY_c 394.7368421052629 positive GLYCEROL_c // GLYCEROL_c 653.2083633741892 positive GLYCOLLATE_c // GLYCOLLATE_c 1000.0 positive HIS_c // HIS_c 1000.0 positive ILE_c // ILE_c 1000.0 positive L__45__ALPHA__45__ALANINE_c // L-ALPHA-ALANINE_c 49.62406015037594 positive L__45__ASPARTATE_c // L-ASPARTATE_c 200.00000000000009 positive L__45__ORNITHINE_c // L-ORNITHINE_c 1000.0 positive LEU_c // LEU_c 1000.0 positive MANNITOL_c // MANNITOL_c 3.9418185917884228 positive PHE_c // PHE_c 1000.0000000000006 positive SER_c // SER_c 447.76119402985074 positive SUC_c // SUC_c 1000.0 positive THR_c // THR_c 999.9999999999997 positive THREO__45__DS__45__ISO__45__CITRATE_c // THREO-DS-ISO-CITRATE_c 249.35068178206237 positive VAL_c // VAL_c 977.1751194325134 positive PRO_c // PRO_c 740.7407407407406 positive GLN_c // GLN_c 83.29947175944739 positive GLYCERATE_c // GLYCERATE_c 999.9999999999994 positive TRP_c // TRP_c 999.9999999999999 positive TYR_c // TYR_c 1000.0 positive