Difference between revisions of "CYTIDEAM-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=THIOREDOXIN-REDUCT-NADPH-RXN THIOREDOXIN-REDUCT-NADPH-RXN] == * common name: ** thioredoxin reducta...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CYTIDEAM-RXN CYTIDEAM-RXN] == * common name: ** deoxycytidine deaminase * ec number: ** [http://enz...")
 
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=THIOREDOXIN-REDUCT-NADPH-RXN THIOREDOXIN-REDUCT-NADPH-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=CYTIDEAM-RXN CYTIDEAM-RXN] ==
 
* common name:
 
* common name:
−
** thioredoxin reductase
+
** deoxycytidine deaminase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.8.1.9 EC-1.8.1.9]
+
** [http://enzyme.expasy.org/EC/3.5.4.5 EC-3.5.4.5]
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
Line 11: Line 11:
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[Ox-Thioredoxin]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[Red-Thioredoxin]][c] '''+''' 1 [[NADP]][c]
+
** 1 [[PROTON]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[DEOXYCYTIDINE]][c] '''=>''' 1 [[DEOXYURIDINE]][c] '''+''' 1 [[AMMONIUM]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 an oxidized thioredoxin[c] '''+''' 1 NADPH[c] '''+''' 1 H+[c] '''=>''' 1 a reduced thioredoxin[c] '''+''' 1 NADP+[c]
+
** 1 H+[c] '''+''' 1 H2O[c] '''+''' 1 2'-deoxycytidine[c] '''=>''' 1 2'-deoxyuridine[c] '''+''' 1 ammonium[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[DN32112_c0_g1_i1]]
+
* Gene: [[DN21553_c0_g1_i6]]
 
** Source: [[annotation-transcriptome]]
 
** Source: [[annotation-transcriptome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[DN20071_c0_g1_i2]]
+
* Gene: [[DN18252_c0_g1_i1]]
−
** Source: [[annotation-transcriptome]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[DN20071_c0_g1_i1]]
 
−
** Source: [[annotation-transcriptome]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[DN21179_c0_g2_i4]]
 
−
** Source: [[annotation-transcriptome]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[DN19897_c0_g1_i1]]
 
−
** Source: [[annotation-transcriptome]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[DN18418_c0_g1_i1]]
 
 
** Source: [[annotation-transcriptome]]
 
** Source: [[annotation-transcriptome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[THIOREDOX-PWY]], thioredoxin pathway: [http://metacyc.org/META/NEW-IMAGE?object=THIOREDOX-PWY THIOREDOX-PWY]
+
* [[PWY-7199]], pyrimidine deoxyribonucleosides salvage: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7199 PWY-7199]
 +
** '''2''' reactions found over '''NA''' reactions in the full pathway
 +
* [[PWY-7181]], pyrimidine deoxyribonucleosides degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7181 PWY-7181]
 
** '''1''' reactions found over '''NA''' reactions in the full pathway
 
** '''1''' reactions found over '''NA''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
Line 44: Line 34:
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20345 20345]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13434 13434]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02016 R02016]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02485 R02485]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q05741 Q05741]
+
** [http://www.uniprot.org/uniprot/P47718 P47718]
−
** [http://www.uniprot.org/uniprot/P56431 P56431]
+
** [http://www.uniprot.org/uniprot/P0ABF6 P0ABF6]
−
** [http://www.uniprot.org/uniprot/O28718 O28718]
+
** [http://www.uniprot.org/uniprot/P47298 P47298]
−
** [http://www.uniprot.org/uniprot/P80880 P80880]
+
** [http://www.uniprot.org/uniprot/Q9CFM8 Q9CFM8]
−
** [http://www.uniprot.org/uniprot/P43496 P43496]
+
** [http://www.uniprot.org/uniprot/P32320 P32320]
−
** [http://www.uniprot.org/uniprot/P94284 P94284]
+
** [http://www.uniprot.org/uniprot/P75051 P75051]
−
** [http://www.uniprot.org/uniprot/O66790 O66790]
+
** [http://www.uniprot.org/uniprot/Q9SU87 Q9SU87]
−
** [http://www.uniprot.org/uniprot/Q9PIY1 Q9PIY1]
+
** [http://www.uniprot.org/uniprot/Q9SU86 Q9SU86]
−
** [http://www.uniprot.org/uniprot/P47348 P47348]
+
** [http://www.uniprot.org/uniprot/O65571 O65571]
−
** [http://www.uniprot.org/uniprot/Q9CH02 Q9CH02]
+
** [http://www.uniprot.org/uniprot/Q9S847 Q9S847]
−
** [http://www.uniprot.org/uniprot/Q7M0Y2 Q7M0Y2]
+
** [http://www.uniprot.org/uniprot/Q9S7L8 Q9S7L8]
−
** [http://www.uniprot.org/uniprot/O26804 O26804]
+
** [http://www.uniprot.org/uniprot/Q9S7S2 Q9S7S2]
−
** [http://www.uniprot.org/uniprot/Q9JU23 Q9JU23]
+
** [http://www.uniprot.org/uniprot/O65896 O65896]
−
** [http://www.uniprot.org/uniprot/P43788 P43788]
+
{{#set: common name=deoxycytidine deaminase}}
−
** [http://www.uniprot.org/uniprot/Q58931 Q58931]
+
{{#set: ec number=EC-3.5.4.5}}
−
** [http://www.uniprot.org/uniprot/Q9CF34 Q9CF34]
 
−
** [http://www.uniprot.org/uniprot/P0A9P4 P0A9P4]
 
−
** [http://www.uniprot.org/uniprot/P23160 P23160]
 
−
** [http://www.uniprot.org/uniprot/P39916 P39916]
 
−
** [http://www.uniprot.org/uniprot/Q39242 Q39242]
 
−
** [http://www.uniprot.org/uniprot/Q39243 Q39243]
 
−
** [http://www.uniprot.org/uniprot/P38816 P38816]
 
−
** [http://www.uniprot.org/uniprot/Q25861 Q25861]
 
−
** [http://www.uniprot.org/uniprot/P29509 P29509]
 
−
** [http://www.uniprot.org/uniprot/P52213 P52213]
 
−
** [http://www.uniprot.org/uniprot/Q16881 Q16881]
 
−
** [http://www.uniprot.org/uniprot/P75531 P75531]
 
−
** [http://www.uniprot.org/uniprot/P74746 P74746]
 
−
** [http://www.uniprot.org/uniprot/P46843 P46843]
 
−
** [http://www.uniprot.org/uniprot/O54535 O54535]
 
−
** [http://www.uniprot.org/uniprot/Q39951 Q39951]
 
−
** [http://www.uniprot.org/uniprot/Q92375 Q92375]
 
−
** [http://www.uniprot.org/uniprot/P52215 P52215]
 
−
** [http://www.uniprot.org/uniprot/P51978 P51978]
 
−
{{#set: common name=thioredoxin reductase}}
 
−
{{#set: ec number=EC-1.8.1.9}}
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: gene associated=DN32112_c0_g1_i1|DN20071_c0_g1_i2|DN20071_c0_g1_i1|DN21179_c0_g2_i4|DN19897_c0_g1_i1|DN18418_c0_g1_i1}}
+
{{#set: gene associated=DN21553_c0_g1_i6|DN18252_c0_g1_i1}}
−
{{#set: in pathway=THIOREDOX-PWY}}
+
{{#set: in pathway=PWY-7199|PWY-7181}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-transcriptome}}
 
{{#set: reconstruction source=annotation-transcriptome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 14:22, 15 January 2021

Reaction CYTIDEAM-RXN

  • common name:
    • deoxycytidine deaminase
  • ec number:
  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7199, pyrimidine deoxyribonucleosides salvage: PWY-7199
    • 2 reactions found over NA reactions in the full pathway
  • PWY-7181, pyrimidine deoxyribonucleosides degradation: PWY-7181
    • 1 reactions found over NA reactions in the full pathway

Reconstruction information

External links





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