Difference between revisions of "2.5.1.32-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CYTIDEAM-RXN CYTIDEAM-RXN] == * common name: ** deoxycytidine deaminase * ec number: ** [http://enz...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.5.1.32-RXN 2.5.1.32-RXN] == * common name: ** prephytoene diphosphate synthase * direction: ** LE...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=CYTIDEAM-RXN CYTIDEAM-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.5.1.32-RXN 2.5.1.32-RXN] ==
 
* common name:
 
* common name:
−
** deoxycytidine deaminase
+
** prephytoene diphosphate synthase
−
* ec number:
 
−
** [http://enzyme.expasy.org/EC/3.5.4.5 EC-3.5.4.5]
 
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* Synonym(s):
 
* Synonym(s):
 +
** PSase
 +
** geranylgeranyl-diphosphate geranylgeranyltransferase
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PROTON]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[DEOXYCYTIDINE]][c] '''=>''' 1 [[DEOXYURIDINE]][c] '''+''' 1 [[AMMONIUM]][c]
+
** 2 [[GERANYLGERANYL-PP]][c] '''=>''' 1 [[CPD-464]][c] '''+''' 1 [[PPI]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H+[c] '''+''' 1 H2O[c] '''+''' 1 2'-deoxycytidine[c] '''=>''' 1 2'-deoxyuridine[c] '''+''' 1 ammonium[c]
+
** 2 geranylgeranyl diphosphate[c] '''=>''' 1 prephytoene diphosphate[c] '''+''' 1 diphosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[DN21553_c0_g1_i6]]
+
* Gene: [[DN21121_c0_g1_i4]]
 
** Source: [[annotation-transcriptome]]
 
** Source: [[annotation-transcriptome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[DN18252_c0_g1_i1]]
+
* Gene: [[DN21121_c0_g1_i2]]
 
** Source: [[annotation-transcriptome]]
 
** Source: [[annotation-transcriptome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7199]], pyrimidine deoxyribonucleosides salvage: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7199 PWY-7199]
+
* [[PWY-7943]], lycopadiene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7943 PWY-7943]
 +
** '''1''' reactions found over '''NA''' reactions in the full pathway
 +
* [[PWY-6287]], neurosporene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6287 PWY-6287]
 
** '''2''' reactions found over '''NA''' reactions in the full pathway
 
** '''2''' reactions found over '''NA''' reactions in the full pathway
−
* [[PWY-7181]], pyrimidine deoxyribonucleosides degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7181 PWY-7181]
+
* [[PWY-6475]], trans-lycopene biosynthesis II (oxygenic phototrophs and green sulfur bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6475 PWY-6475]
−
** '''1''' reactions found over '''NA''' reactions in the full pathway
+
** '''4''' reactions found over '''NA''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
Line 34: Line 36:
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13434 13434]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22297 22297]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02485 R02485]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02065 R02065]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P47718 P47718]
+
** [http://www.uniprot.org/uniprot/P53609 P53609]
−
** [http://www.uniprot.org/uniprot/P0ABF6 P0ABF6]
+
** [http://www.uniprot.org/uniprot/P37295 P37295]
−
** [http://www.uniprot.org/uniprot/P47298 P47298]
+
** [http://www.uniprot.org/uniprot/P22872 P22872]
−
** [http://www.uniprot.org/uniprot/Q9CFM8 Q9CFM8]
+
** [http://www.uniprot.org/uniprot/P53610 P53610]
−
** [http://www.uniprot.org/uniprot/P32320 P32320]
+
** [http://www.uniprot.org/uniprot/P53612 P53612]
−
** [http://www.uniprot.org/uniprot/P75051 P75051]
+
** [http://www.uniprot.org/uniprot/P17056 P17056]
−
** [http://www.uniprot.org/uniprot/Q9SU87 Q9SU87]
+
** [http://www.uniprot.org/uniprot/P49293 P49293]
−
** [http://www.uniprot.org/uniprot/Q9SU86 Q9SU86]
+
{{#set: common name=prephytoene diphosphate synthase}}
−
** [http://www.uniprot.org/uniprot/O65571 O65571]
 
−
** [http://www.uniprot.org/uniprot/Q9S847 Q9S847]
 
−
** [http://www.uniprot.org/uniprot/Q9S7L8 Q9S7L8]
 
−
** [http://www.uniprot.org/uniprot/Q9S7S2 Q9S7S2]
 
−
** [http://www.uniprot.org/uniprot/O65896 O65896]
 
−
{{#set: common name=deoxycytidine deaminase}}
 
−
{{#set: ec number=EC-3.5.4.5}}
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: gene associated=DN21553_c0_g1_i6|DN18252_c0_g1_i1}}
+
{{#set: common name=PSase|geranylgeranyl-diphosphate geranylgeranyltransferase}}
−
{{#set: in pathway=PWY-7199|PWY-7181}}
+
{{#set: gene associated=DN21121_c0_g1_i4|DN21121_c0_g1_i2}}
 +
{{#set: in pathway=PWY-7943|PWY-6287|PWY-6475}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-transcriptome}}
 
{{#set: reconstruction source=annotation-transcriptome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 14:22, 15 January 2021

Reaction 2.5.1.32-RXN

  • common name:
    • prephytoene diphosphate synthase
  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):
    • PSase
    • geranylgeranyl-diphosphate geranylgeranyltransferase

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 2 geranylgeranyl diphosphate[c] => 1 prephytoene diphosphate[c] + 1 diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7943, lycopadiene biosynthesis: PWY-7943
    • 1 reactions found over NA reactions in the full pathway
  • PWY-6287, neurosporene biosynthesis: PWY-6287
    • 2 reactions found over NA reactions in the full pathway
  • PWY-6475, trans-lycopene biosynthesis II (oxygenic phototrophs and green sulfur bacteria): PWY-6475
    • 4 reactions found over NA reactions in the full pathway

Reconstruction information

External links





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