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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=G3P G3P] == * common name: ** 3-phospho-D-glycerate * inchi key: ** InChIKey=OSJPPGNTCRNQQC-UWT...") |
(Created page with "== UCOMGEM description == == Automatic reconstruction with [http://aureme.genouest.org AuReMe] == Model summary: summary Download '''AuReMe''' Input/Out...") |
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− | + | == UCOMGEM description == | |
− | == | + | == Automatic reconstruction with [http://aureme.genouest.org AuReMe] == |
− | + | Model summary: [[MEDIA:summary.txt|summary]] | |
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− | + | Download '''AuReMe''' Input/Output [LINK OR MEDIA data] | |
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− | + | The automatic reconstruction of ''Ulva compressa'' results to a Genome scale [[MEDIA:model.xml|Model]] containing 1117 reactions, 1391 metabolites, 1286 genes and 741 pathways. This GeM was obtained based on the following sources: | |
− | + | * Based on annotation data: | |
− | + | ** Tool: [http://bioinformatics.ai.sri.com/ptools/ Pathway tools] | |
− | + | *** Creation of a metabolic network containing 1117 reactions | |
− | * | + | * Based on orthology data: |
− | + | ** Tool: [http://pathtastic.gforge.inria.fr Pantograph] | |
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− | * | + | [[FILE:venn.png|frameless|border]] |
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− | + | == Collaborative curation == | |
− | * | + | * Suggest reactions to add or remove: |
− | * | + | ** Download this [[MEDIA:Add_delete_reaction.csv|form]] |
− | ** [http:// | + | * Suggest new reactions to create and add: |
− | + | ** Download this [[MEDIA:Reaction_creator.csv|form]] | |
− | * | + | * '''Follow the examples given in the form(s) to correctly share your suggestions''' |
− | * | + | * Send the filled form(s) to: gem-aureme[at]inria.fr |
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Latest revision as of 14:20, 15 January 2021
UCOMGEM description
Automatic reconstruction with AuReMe
Model summary: summary
Download AuReMe Input/Output [LINK OR MEDIA data]
The automatic reconstruction of Ulva compressa results to a Genome scale Model containing 1117 reactions, 1391 metabolites, 1286 genes and 741 pathways. This GeM was obtained based on the following sources:
- Based on annotation data:
- Tool: Pathway tools
- Creation of a metabolic network containing 1117 reactions
- Tool: Pathway tools
- Based on orthology data:
- Tool: Pantograph