Difference between revisions of "3-OXOACYL-ACP-SYNTH-BASE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15378 RXN-15378] == * ec number: ** [http://enzyme.expasy.org/EC/1.3.5.1 EC-1.3.5.1] * directio...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-OXOACYL-ACP-SYNTH-BASE-RXN 3-OXOACYL-ACP-SYNTH-BASE-RXN] == * common name: ** acetoacetyl-[acp] s...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15378 RXN-15378] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-OXOACYL-ACP-SYNTH-BASE-RXN 3-OXOACYL-ACP-SYNTH-BASE-RXN] ==
 +
* common name:
 +
** acetoacetyl-[acp] synthase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.3.5.1 EC-1.3.5.1]
+
** [http://enzyme.expasy.org/EC/2.3.1.179 EC-2.3.1.179]
 +
** [http://enzyme.expasy.org/EC/2.3.1.41 EC-2.3.1.41]
 +
** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
 +
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
Line 9: Line 14:
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CPD-9612]][c] '''+''' 1 [[SUC]][c] '''=>''' 1 [[CPD-15301]][c] '''+''' 1 [[FUM]][c]
+
** 1 [[ACETYL-ACP]][c] '''+''' 1 [[MALONYL-ACP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[ACP]][c] '''+''' 1 [[Acetoacetyl-ACPs]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 caldariellaquinone[c] '''+''' 1 succinate[c] '''=>''' 1 caldariellaquinol[c] '''+''' 1 fumarate[c]
+
** 1 an acetyl-[acp][c] '''+''' 1 a malonyl-[acp][c] '''+''' 1 H+[c] '''=>''' 1 a holo-[acyl-carrier protein][c] '''+''' 1 an acetoacetyl-[acp][c] '''+''' 1 CO2[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[DN3976_c0_g1_i1]]
+
* Gene: [[DN20375_c0_g1_i4]]
 
** Source: [[annotation-transcriptome]]
 
** Source: [[annotation-transcriptome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
Line 21: Line 26:
 
** Source: [[annotation-transcriptome]]
 
** Source: [[annotation-transcriptome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[DN27637_c0_g1_i1]]
+
* Gene: [[DN11444_c0_g1_i1]]
 +
** Source: [[annotation-transcriptome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[DN25390_c0_g1_i1]]
 +
** Source: [[annotation-transcriptome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[DN6632_c0_g1_i1]]
 +
** Source: [[annotation-transcriptome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[DN20375_c0_g1_i2]]
 +
** Source: [[annotation-transcriptome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[DN18128_c0_g1_i1]]
 +
** Source: [[annotation-transcriptome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[DN20375_c0_g1_i1]]
 
** Source: [[annotation-transcriptome]]
 
** Source: [[annotation-transcriptome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-7388]], octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7388 PWY-7388]
 +
** '''7''' reactions found over '''NA''' reactions in the full pathway
 +
* [[PWY-5966]], fatty acid biosynthesis initiation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5966 PWY-5966]
 +
** '''2''' reactions found over '''NA''' reactions in the full pathway
 +
* [[PWY-5965]], fatty acid biosynthesis initiation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5965 PWY-5965]
 +
** '''1''' reactions found over '''NA''' reactions in the full pathway
 +
* [[FASYN-INITIAL-PWY]], superpathway of fatty acid biosynthesis initiation (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=FASYN-INITIAL-PWY FASYN-INITIAL-PWY]
 +
** '''5''' reactions found over '''NA''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
Line 30: Line 58:
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: ec number=EC-1.3.5.1}}
+
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P23902 P23902]
 +
** [http://www.uniprot.org/uniprot/P0A6R0 P0A6R0]
 +
** [http://www.uniprot.org/uniprot/P49327 P49327]
 +
** [http://www.uniprot.org/uniprot/P43710 P43710]
 +
** [http://www.uniprot.org/uniprot/Q9HYR2 Q9HYR2]
 +
** [http://www.uniprot.org/uniprot/O67612 O67612]
 +
** [http://www.uniprot.org/uniprot/P20582 P20582]
 +
** [http://www.uniprot.org/uniprot/Q9JT63 Q9JT63]
 +
** [http://www.uniprot.org/uniprot/Q9JW56 Q9JW56]
 +
** [http://www.uniprot.org/uniprot/Q9PMZ6 Q9PMZ6]
 +
** [http://www.uniprot.org/uniprot/P43711 P43711]
 +
** [http://www.uniprot.org/uniprot/O25284 O25284]
 +
** [http://www.uniprot.org/uniprot/Q9JX65 Q9JX65]
 +
** [http://www.uniprot.org/uniprot/O34340 O34340]
 +
** [http://www.uniprot.org/uniprot/Q9PI63 Q9PI63]
 +
** [http://www.uniprot.org/uniprot/P0AAI5 P0AAI5]
 +
** [http://www.uniprot.org/uniprot/Q07510 Q07510]
 +
** [http://www.uniprot.org/uniprot/Q06097 Q06097]
 +
** [http://www.uniprot.org/uniprot/P41175 P41175]
 +
** [http://www.uniprot.org/uniprot/P31176 P31176]
 +
** [http://www.uniprot.org/uniprot/Q40027 Q40027]
 +
** [http://www.uniprot.org/uniprot/Q40028 Q40028]
 +
** [http://www.uniprot.org/uniprot/P73283 P73283]
 +
** [http://www.uniprot.org/uniprot/P0A953 P0A953]
 +
** [http://www.uniprot.org/uniprot/O64485 O64485]
 +
** [http://www.uniprot.org/uniprot/O65677 O65677]
 +
** [http://www.uniprot.org/uniprot/Q39310 Q39310]
 +
** [http://www.uniprot.org/uniprot/O23738 O23738]
 +
** [http://www.uniprot.org/uniprot/Q41134 Q41134]
 +
** [http://www.uniprot.org/uniprot/Q41135 Q41135]
 +
** [http://www.uniprot.org/uniprot/Q54208 Q54208]
 +
** [http://www.uniprot.org/uniprot/O54440 O54440]
 +
** [http://www.uniprot.org/uniprot/P55338 P55338]
 +
** [http://www.uniprot.org/uniprot/Q9RA31 Q9RA31]
 +
** [http://www.uniprot.org/uniprot/P12276 P12276]
 +
** [http://www.uniprot.org/uniprot/P12785 P12785]
 +
{{#set: common name=acetoacetyl-[acp] synthase}}
 +
{{#set: ec number=EC-2.3.1.179}}
 +
{{#set: ec number=EC-2.3.1.41}}
 +
{{#set: ec number=EC-2.3.1.85}}
 +
{{#set: ec number=EC-2.3.1.86}}
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: gene associated=DN3976_c0_g1_i1|DN13183_c0_g1_i1|DN27637_c0_g1_i1}}
+
{{#set: gene associated=DN20375_c0_g1_i4|DN13183_c0_g1_i1|DN11444_c0_g1_i1|DN25390_c0_g1_i1|DN6632_c0_g1_i1|DN20375_c0_g1_i2|DN18128_c0_g1_i1|DN20375_c0_g1_i1}}
−
{{#set: in pathway=}}
+
{{#set: in pathway=PWY-7388|PWY-5966|PWY-5965|FASYN-INITIAL-PWY}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-transcriptome}}
 
{{#set: reconstruction source=annotation-transcriptome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 14:21, 15 January 2021

Reaction 3-OXOACYL-ACP-SYNTH-BASE-RXN

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7388, octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast): PWY-7388
    • 7 reactions found over NA reactions in the full pathway
  • PWY-5966, fatty acid biosynthesis initiation II: PWY-5966
    • 2 reactions found over NA reactions in the full pathway
  • PWY-5965, fatty acid biosynthesis initiation III: PWY-5965
    • 1 reactions found over NA reactions in the full pathway
  • FASYN-INITIAL-PWY, superpathway of fatty acid biosynthesis initiation (E. coli): FASYN-INITIAL-PWY
    • 5 reactions found over NA reactions in the full pathway

Reconstruction information

External links

Property "Common name" (as page type) with input value "acetoacetyl-[acp] synthase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.






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