Difference between revisions of "4.2.1.58-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-308 RXN0-308] == * common name: ** L-cysteine:[protein cysteine] sulfurtransferase * ec number...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=4.2.1.58-RXN 4.2.1.58-RXN] == * common name: ** (3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydra...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-308 RXN0-308] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=4.2.1.58-RXN 4.2.1.58-RXN] ==
 
* common name:
 
* common name:
−
** L-cysteine:[protein cysteine] sulfurtransferase
+
** (3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydratase
 +
** (3R)-3-hydroxybutanoyl-[acyl-carrier protein] dehydratase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.8.1.7 EC-2.8.1.7]
+
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
 +
** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
 +
** [http://enzyme.expasy.org/EC/4.2.1.59 EC-4.2.1.59]
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* Synonym(s):
 
* Synonym(s):
 +
** crotonoyl-[acyl-carrier-protein] hydratase
 +
** β-hydroxybutyryl acyl carrier protein (ACP) dehydrase
 +
** β-hydroxybutyryl acyl carrier protein dehydrase
 +
** enoyl acyl carrier protein hydrase
 +
** crotonyl acyl carrier protein hydratase
 +
** 3-hydroxybutyryl acyl carrier protein dehydratase
 +
** β-hydroxybutyryl acyl carrier  protein dehydrase
 +
** (3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase (but-2-enoyl-[acyl-carrier protein]-forming)
 +
** (3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[Cysteine-Desulfurase-L-cysteine]][c] '''+''' 1 [[CYS]][c] '''=>''' 1 [[L-Cysteine-Desulfurase-persulfide]][c] '''+''' 1 [[L-ALPHA-ALANINE]][c]
+
** 1 [[Beta-3-hydroxybutyryl-ACPs]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[Crotonyl-ACPs]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 an [L-cysteine desulfurase]-L-cysteine[c] '''+''' 1 L-cysteine[c] '''=>''' 1 an [L-cysteine desulfurase]-S-sulfanyl-L-cysteine[c] '''+''' 1 L-alanine[c]
+
** 1 a (3R)-3-hydroxybutanoyl-[acp][c] '''=>''' 1 H2O[c] '''+''' 1 a crotonyl-[acp][c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[DN22718_c0_g1_i1]]
+
* Gene: [[DN20375_c0_g1_i4]]
 
** Source: [[annotation-transcriptome]]
 
** Source: [[annotation-transcriptome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[DN15658_c0_g1_i2]]
+
* Gene: [[DN25390_c0_g1_i1]]
 +
** Source: [[annotation-transcriptome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[DN6632_c0_g1_i1]]
 +
** Source: [[annotation-transcriptome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[DN20375_c0_g1_i2]]
 +
** Source: [[annotation-transcriptome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[DN13183_c0_g1_i1]]
 +
** Source: [[annotation-transcriptome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[DN11444_c0_g1_i1]]
 +
** Source: [[annotation-transcriptome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[DN18128_c0_g1_i1]]
 +
** Source: [[annotation-transcriptome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[DN20375_c0_g1_i1]]
 
** Source: [[annotation-transcriptome]]
 
** Source: [[annotation-transcriptome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7888]], tRNA-uridine 2-thiolation (cytoplasmic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7888 PWY-7888]
+
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
−
** '''1''' reactions found over '''NA''' reactions in the full pathway
+
** '''27''' reactions found over '''NA''' reactions in the full pathway
−
* [[PWY-6823]], molybdenum cofactor biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6823 PWY-6823]
+
* [[PWY-7388]], octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7388 PWY-7388]
−
** '''4''' reactions found over '''NA''' reactions in the full pathway
+
** '''7''' reactions found over '''NA''' reactions in the full pathway
−
* [[PWY-7892]], tRNA-uridine 2-thiolation (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7892 PWY-7892]
+
* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
−
** '''1''' reactions found over '''NA''' reactions in the full pathway
+
** '''27''' reactions found over '''NA''' reactions in the full pathway
−
* [[PWY0-1021]], L-alanine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1021 PWY0-1021]
 
−
** '''1''' reactions found over '''NA''' reactions in the full pathway
 
−
* [[PWY-7904]], tRNA-uridine 2-thiolation (thermophilic bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7904 PWY-7904]
 
−
** '''1''' reactions found over '''NA''' reactions in the full pathway
 
−
* [[PWY-7891]], tRNA-uridine 2-thiolation (yeast mitochondria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7891 PWY-7891]
 
−
** '''1''' reactions found over '''NA''' reactions in the full pathway
 
−
* [[PWY-6891]], thiazole biosynthesis II (aerobic bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6891 PWY-6891]
 
−
** '''2''' reactions found over '''NA''' reactions in the full pathway
 
−
* [[PWY-7889]], tRNA-uridine 2-thiolation (mammalian mitochondria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7889 PWY-7889]
 
−
** '''1''' reactions found over '''NA''' reactions in the full pathway
 
−
* [[PWY-6892]], thiazole biosynthesis I (facultative anaerobic bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6892 PWY-6892]
 
−
** '''3''' reactions found over '''NA''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
Line 47: Line 65:
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17458 17458]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R07460 R07460]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04428 R04428]
−
{{#set: common name=L-cysteine:[protein cysteine] sulfurtransferase}}
+
{{#set: common name=(3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydratase}}
−
{{#set: ec number=EC-2.8.1.7}}
+
{{#set: common name=(3R)-3-hydroxybutanoyl-[acyl-carrier protein] dehydratase}}
 +
{{#set: ec number=EC-2.3.1.86}}
 +
{{#set: ec number=EC-2.3.1.85}}
 +
{{#set: ec number=EC-4.2.1.59}}
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: gene associated=DN22718_c0_g1_i1|DN15658_c0_g1_i2}}
+
{{#set: common name=crotonoyl-[acyl-carrier-protein] hydratase|β-hydroxybutyryl acyl carrier protein (ACP) dehydrase|β-hydroxybutyryl acyl carrier protein dehydrase|enoyl acyl carrier protein hydrase|crotonyl acyl carrier protein hydratase|3-hydroxybutyryl acyl carrier protein dehydratase|β-hydroxybutyryl acyl carrier  protein dehydrase|(3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase (but-2-enoyl-[acyl-carrier protein]-forming)|(3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase}}
−
{{#set: in pathway=PWY-7888|PWY-6823|PWY-7892|PWY0-1021|PWY-7904|PWY-7891|PWY-6891|PWY-7889|PWY-6892}}
+
{{#set: gene associated=DN20375_c0_g1_i4|DN25390_c0_g1_i1|DN6632_c0_g1_i1|DN20375_c0_g1_i2|DN13183_c0_g1_i1|DN11444_c0_g1_i1|DN18128_c0_g1_i1|DN20375_c0_g1_i1}}
 +
{{#set: in pathway=PWY-5971|PWY-7388|PWY-5994}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-transcriptome}}
 
{{#set: reconstruction source=annotation-transcriptome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 14:21, 15 January 2021

Reaction 4.2.1.58-RXN

  • common name:
    • (3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydratase
    • (3R)-3-hydroxybutanoyl-[acyl-carrier protein] dehydratase
  • ec number:
  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):
    • crotonoyl-[acyl-carrier-protein] hydratase
    • β-hydroxybutyryl acyl carrier protein (ACP) dehydrase
    • β-hydroxybutyryl acyl carrier protein dehydrase
    • enoyl acyl carrier protein hydrase
    • crotonyl acyl carrier protein hydratase
    • 3-hydroxybutyryl acyl carrier protein dehydratase
    • β-hydroxybutyryl acyl carrier protein dehydrase
    • (3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase (but-2-enoyl-[acyl-carrier protein]-forming)
    • (3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5971, palmitate biosynthesis II (bacteria and plants): PWY-5971
    • 27 reactions found over NA reactions in the full pathway
  • PWY-7388, octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast): PWY-7388
    • 7 reactions found over NA reactions in the full pathway
  • PWY-5994, palmitate biosynthesis I (animals and fungi): PWY-5994
    • 27 reactions found over NA reactions in the full pathway

Reconstruction information

External links

Property "Common name" (as page type) with input value "(3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydratase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process. Property "Common name" (as page type) with input value "(3R)-3-hydroxybutanoyl-[acyl-carrier protein] dehydratase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.



  • Property "Common name" (as page type) with input value "crotonoyl-[acyl-carrier-protein] hydratase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
  • Property "Common name" (as page type) with input value "(3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase (but-2-enoyl-[acyl-carrier protein]-forming)" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
  • Property "Common name" (as page type) with input value "(3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.



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