Difference between revisions of "SAMDECARB-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-18917 RXN-18917] == * common name: ** Man7GlcNAc2 isomer 7A1,2,3B3 1,2-α-mannosidase * ec...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SAMDECARB-RXN SAMDECARB-RXN] == * common name: ** S-adenosylmethionine decarboxylase * ec number: *...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-18917 RXN-18917] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SAMDECARB-RXN SAMDECARB-RXN] ==
 
* common name:
 
* common name:
−
** Man7GlcNAc2 isomer 7A1,2,3B3 1,2-α-mannosidase
+
** S-adenosylmethionine decarboxylase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.2.1.113 EC-3.2.1.113]
+
** [http://enzyme.expasy.org/EC/4.1.1.50 EC-4.1.1.50]
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
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== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[Man7GlcNAc2-protein-A123B3]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Man6GlcNAc2-protein-A123]][c] '''+''' 1 [[CPD-12601]][c]
+
** 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[S-ADENOSYLMETHIONINAMINE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 Man7GlcNAc2-[protein] (isomer 7A1,2,3B3)[c] '''+''' 1 H2O[c] '''=>''' 1 Man6GlcNAc2-[protein] (isomer 6A1,2,3)[c] '''+''' 1 β-D-mannopyranose[c]
+
** 1 S-adenosyl-L-methionine[c] '''+''' 1 H+[c] '''=>''' 1 CO2[c] '''+''' 1 S-adenosyl 3-(methylthio)propylamine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[DN18755_c0_g1_i2]]
+
* Gene: [[DN13719_c0_g1_i1]]
 
** Source: [[annotation-transcriptome]]
 
** Source: [[annotation-transcriptome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7919]], protein N-glycosylation processing phase (plants and animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7919 PWY-7919]
+
* [[ARGSPECAT-PWY]], spermine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=ARGSPECAT-PWY ARGSPECAT-PWY]
−
** '''14''' reactions found over '''NA''' reactions in the full pathway
+
** '''1''' reactions found over '''NA''' reactions in the full pathway
 +
* [[PWY-6834]], spermidine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6834 PWY-6834]
 +
** '''1''' reactions found over '''NA''' reactions in the full pathway
 +
* [[BSUBPOLYAMSYN-PWY]], spermidine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=BSUBPOLYAMSYN-PWY BSUBPOLYAMSYN-PWY]
 +
** '''1''' reactions found over '''NA''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
Line 28: Line 32:
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: common name=Man7GlcNAc2 isomer 7A1,2,3B3 1,2-α-mannosidase}}
+
* RHEA:
−
{{#set: ec number=EC-3.2.1.113}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15982 15982]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00178 R00178]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P82184 P82184]
 +
** [http://www.uniprot.org/uniprot/P21182 P21182]
 +
** [http://www.uniprot.org/uniprot/P0A7F6 P0A7F6]
 +
** [http://www.uniprot.org/uniprot/P17707 P17707]
 +
** [http://www.uniprot.org/uniprot/P28918 P28918]
 +
** [http://www.uniprot.org/uniprot/P17708 P17708]
 +
** [http://www.uniprot.org/uniprot/P50243 P50243]
 +
** [http://www.uniprot.org/uniprot/P46255 P46255]
 +
** [http://www.uniprot.org/uniprot/Q04694 Q04694]
 +
** [http://www.uniprot.org/uniprot/Q42679 Q42679]
 +
** [http://www.uniprot.org/uniprot/Q42829 Q42829]
 +
** [http://www.uniprot.org/uniprot/P79888 P79888]
 +
** [http://www.uniprot.org/uniprot/O04009 O04009]
 +
** [http://www.uniprot.org/uniprot/O24575 O24575]
 +
** [http://www.uniprot.org/uniprot/Q43820 Q43820]
 +
** [http://www.uniprot.org/uniprot/Q39676 Q39676]
 +
** [http://www.uniprot.org/uniprot/Q39677 Q39677]
 +
** [http://www.uniprot.org/uniprot/O49972 O49972]
 +
** [http://www.uniprot.org/uniprot/O65354 O65354]
 +
** [http://www.uniprot.org/uniprot/O02655 O02655]
 +
{{#set: common name=S-adenosylmethionine decarboxylase}}
 +
{{#set: ec number=EC-4.1.1.50}}
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: gene associated=DN18755_c0_g1_i2}}
+
{{#set: gene associated=DN13719_c0_g1_i1}}
−
{{#set: in pathway=PWY-7919}}
+
{{#set: in pathway=ARGSPECAT-PWY|PWY-6834|BSUBPOLYAMSYN-PWY}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-transcriptome}}
 
{{#set: reconstruction source=annotation-transcriptome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 14:21, 15 January 2021

Reaction SAMDECARB-RXN

  • common name:
    • S-adenosylmethionine decarboxylase
  • ec number:
  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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