Difference between revisions of "4.2.1.61-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17917 RXN-17917] == * direction: ** LEFT-TO-RIGHT * Synonym(s): == Reaction Formula == * With...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=4.2.1.61-RXN 4.2.1.61-RXN] == * common name: ** (3R)-3-hydroxypalmitoyl-[acyl-carrier protein] dehy...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17917 RXN-17917] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=4.2.1.61-RXN 4.2.1.61-RXN] ==
 +
* common name:
 +
** (3R)-3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
 +
** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
 +
** [http://enzyme.expasy.org/EC/4.2.1.59 EC-4.2.1.59]
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* Synonym(s):
 
* Synonym(s):
 +
** D-3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase
 +
** β-hydroxypalmitoyl-acyl carrier protein dehydrase
 +
** β-hydroxypalmitoyl thioester dehydratase
 +
** β-hydroxypalmityl-ACP dehydrase
 +
** (3R)-3-hydroxypalmitoyl-[acyl-carrier-protein] hydro-lyase
 +
** (3R)-3-hydroxypalmitoyl-[acyl-carrier-protein] hydro-lyase (hexadec-2-enoyl-[acyl-carrier protein]-forming)
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
** 1 [[ATP]][c] '''+''' 1 [[DNA-Ligase-L-lysine]][c] '''=>''' 1 [[DNA-Ligase-L-lysine-adenylate]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c]
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** 1 [[R-3-Hydroxypalmitoyl-ACPs]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[2-Hexadecenoyl-ACPs]][c]
 
* With common name(s):
 
* With common name(s):
** 1 ATP[c] '''+''' 1 a [DNA ligase]-L-lysine[c] '''=>''' 1 a [DNA ligase]-N6-(5'-adenylyl)-L-lysine[c] '''+''' 1 diphosphate[c] '''+''' 1 H+[c]
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** 1 a (3R)-3-hydroxypalmitoyl-[acp][c] '''=>''' 1 H2O[c] '''+''' 1 a trans hexadecenoyl-[acp][c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
* Gene: [[DN19959_c0_g1_i3]]
+
* Gene: [[DN20375_c0_g1_i1]]
 
** Source: [[annotation-transcriptome]]
 
** Source: [[annotation-transcriptome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
* Gene: [[DN4556_c0_g1_i1]]
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* Gene: [[DN20375_c0_g1_i4]]
 +
** Source: [[annotation-transcriptome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[DN18128_c0_g1_i1]]
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** Source: [[annotation-transcriptome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[DN13183_c0_g1_i1]]
 +
** Source: [[annotation-transcriptome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[DN11444_c0_g1_i1]]
 +
** Source: [[annotation-transcriptome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[DN20375_c0_g1_i2]]
 +
** Source: [[annotation-transcriptome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[DN25390_c0_g1_i1]]
 +
** Source: [[annotation-transcriptome]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[DN6632_c0_g1_i1]]
 
** Source: [[annotation-transcriptome]]
 
** Source: [[annotation-transcriptome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
 +
** '''27''' reactions found over '''NA''' reactions in the full pathway
 +
* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
 +
** '''27''' reactions found over '''NA''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
Line 25: Line 59:
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R04462 R04462]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P49327 P49327]
 +
** [http://www.uniprot.org/uniprot/P07149 P07149]
 +
** [http://www.uniprot.org/uniprot/P12276 P12276]
 +
** [http://www.uniprot.org/uniprot/P12785 P12785]
 +
{{#set: common name=(3R)-3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase}}
 +
{{#set: ec number=EC-2.3.1.86}}
 +
{{#set: ec number=EC-2.3.1.85}}
 +
{{#set: ec number=EC-4.2.1.59}}
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
{{#set: gene associated=DN19959_c0_g1_i3|DN4556_c0_g1_i1}}
+
{{#set: common name=D-3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase|β-hydroxypalmitoyl-acyl carrier protein dehydrase|β-hydroxypalmitoyl thioester dehydratase|β-hydroxypalmityl-ACP dehydrase|(3R)-3-hydroxypalmitoyl-[acyl-carrier-protein] hydro-lyase|(3R)-3-hydroxypalmitoyl-[acyl-carrier-protein] hydro-lyase (hexadec-2-enoyl-[acyl-carrier protein]-forming)}}
{{#set: in pathway=}}
+
{{#set: gene associated=DN20375_c0_g1_i1|DN20375_c0_g1_i4|DN18128_c0_g1_i1|DN13183_c0_g1_i1|DN11444_c0_g1_i1|DN20375_c0_g1_i2|DN25390_c0_g1_i1|DN6632_c0_g1_i1}}
 +
{{#set: in pathway=PWY-5971|PWY-5994}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-transcriptome}}
 
{{#set: reconstruction source=annotation-transcriptome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 14:22, 15 January 2021

Reaction 4.2.1.61-RXN

  • common name:
    • (3R)-3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase
  • ec number:
  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):
    • D-3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase
    • β-hydroxypalmitoyl-acyl carrier protein dehydrase
    • β-hydroxypalmitoyl thioester dehydratase
    • β-hydroxypalmityl-ACP dehydrase
    • (3R)-3-hydroxypalmitoyl-[acyl-carrier-protein] hydro-lyase
    • (3R)-3-hydroxypalmitoyl-[acyl-carrier-protein] hydro-lyase (hexadec-2-enoyl-[acyl-carrier protein]-forming)

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5971, palmitate biosynthesis II (bacteria and plants): PWY-5971
    • 27 reactions found over NA reactions in the full pathway
  • PWY-5994, palmitate biosynthesis I (animals and fungi): PWY-5994
    • 27 reactions found over NA reactions in the full pathway

Reconstruction information

External links

Property "Common name" (as page type) with input value "(3R)-3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.



  • Property "Common name" (as page type) with input value "D-3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
  • Property "Common name" (as page type) with input value "(3R)-3-hydroxypalmitoyl-[acyl-carrier-protein] hydro-lyase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
  • Property "Common name" (as page type) with input value "(3R)-3-hydroxypalmitoyl-[acyl-carrier-protein] hydro-lyase (hexadec-2-enoyl-[acyl-carrier protein]-forming)" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.