Difference between revisions of "GLYRIBONUCSYN-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-18602 RXN-18602] == * ec number: ** [http://enzyme.expasy.org/EC/2.5.1.48 EC-2.5.1.48] * direct...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYRIBONUCSYN-RXN GLYRIBONUCSYN-RXN] == * common name: ** phosphoribosylamine—glycine ligase...")
 
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-18602 RXN-18602] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYRIBONUCSYN-RXN GLYRIBONUCSYN-RXN] ==
 +
* common name:
 +
** phosphoribosylamine—glycine ligase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.5.1.48 EC-2.5.1.48]
+
** [http://enzyme.expasy.org/EC/6.3.4.13 EC-6.3.4.13]
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[O-SUCCINYL-L-HOMOSERINE]][c] '''+''' 1 [[CPD-7671]][c] '''<=>''' 1 [[MET]][c] '''+''' 1 [[SUC]][c] '''+''' 1 [[PROTON]][c]
+
** 1 [[5-P-BETA-D-RIBOSYL-AMINE]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[GLY]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[5-PHOSPHO-RIBOSYL-GLYCINEAMIDE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[ADP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 O-succinyl-L-homoserine[c] '''+''' 1 methanethiol[c] '''<=>''' 1 L-methionine[c] '''+''' 1 succinate[c] '''+''' 1 H+[c]
+
** 1 5-phospho-&beta;-D-ribosylamine[c] '''+''' 1 ATP[c] '''+''' 1 glycine[c] '''=>''' 1 phosphate[c] '''+''' 1 N1-(5-phospho-&beta;-D-ribosyl)glycinamide[c] '''+''' 1 H+[c] '''+''' 1 ADP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[DN15452_c0_g1_i1]]
+
* Gene: [[DN31758_c0_g1_i1]]
−
** Source: [[annotation-transcriptome]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[DN15452_c0_g1_i2]]
 
 
** Source: [[annotation-transcriptome]]
 
** Source: [[annotation-transcriptome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-6121]], 5-aminoimidazole ribonucleotide biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6121 PWY-6121]
 +
** '''5''' reactions found over '''NA''' reactions in the full pathway
 +
* [[PWY-6122]], 5-aminoimidazole ribonucleotide biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6122 PWY-6122]
 +
** '''4''' reactions found over '''NA''' reactions in the full pathway
 +
* [[PWY-6277]], superpathway of 5-aminoimidazole ribonucleotide biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6277 PWY-6277]
 +
** '''6''' reactions found over '''NA''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[annotation]]
 
* Category: [[annotation]]
Line 27: Line 32:
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: ec number=EC-2.5.1.48}}
+
* RHEA:
−
{{#set: direction=REVERSIBLE}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17453 17453]
−
{{#set: gene associated=DN15452_c0_g1_i1|DN15452_c0_g1_i2}}
+
* LIGAND-RXN:
−
{{#set: in pathway=}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R04144 R04144]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P07244 P07244]
 +
** [http://www.uniprot.org/uniprot/Q58347 Q58347]
 +
** [http://www.uniprot.org/uniprot/P12039 P12039]
 +
** [http://www.uniprot.org/uniprot/P21872 P21872]
 +
** [http://www.uniprot.org/uniprot/P15640 P15640]
 +
** [http://www.uniprot.org/uniprot/P00967 P00967]
 +
** [http://www.uniprot.org/uniprot/P16340 P16340]
 +
** [http://www.uniprot.org/uniprot/P22102 P22102]
 +
** [http://www.uniprot.org/uniprot/Q9JWU6 Q9JWU6]
 +
** [http://www.uniprot.org/uniprot/P43845 P43845]
 +
** [http://www.uniprot.org/uniprot/Q9PN47 Q9PN47]
 +
** [http://www.uniprot.org/uniprot/Q64737 Q64737]
 +
** [http://www.uniprot.org/uniprot/P20772 P20772]
 +
** [http://www.uniprot.org/uniprot/P26977 P26977]
 +
** [http://www.uniprot.org/uniprot/Q59492 Q59492]
 +
** [http://www.uniprot.org/uniprot/P74232 P74232]
 +
** [http://www.uniprot.org/uniprot/Q42804 Q42804]
 +
** [http://www.uniprot.org/uniprot/P52421 P52421]
 +
{{#set: common name=phosphoribosylamine&mdash;glycine ligase}}
 +
{{#set: ec number=EC-6.3.4.13}}
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: gene associated=DN31758_c0_g1_i1}}
 +
{{#set: in pathway=PWY-6121|PWY-6122|PWY-6277}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-transcriptome}}
 
{{#set: reconstruction source=annotation-transcriptome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 14:22, 15 January 2021

Reaction GLYRIBONUCSYN-RXN

  • common name:
    • phosphoribosylamine—glycine ligase
  • ec number:
  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6121, 5-aminoimidazole ribonucleotide biosynthesis I: PWY-6121
    • 5 reactions found over NA reactions in the full pathway
  • PWY-6122, 5-aminoimidazole ribonucleotide biosynthesis II: PWY-6122
    • 4 reactions found over NA reactions in the full pathway
  • PWY-6277, superpathway of 5-aminoimidazole ribonucleotide biosynthesis: PWY-6277
    • 6 reactions found over NA reactions in the full pathway

Reconstruction information

External links





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