Difference between revisions of "RXN-12263"
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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.6.3.6-RXN 3.6.3.6-RXN] == * common name: ** plasma membrane H+-ATPase * ec number: ** [http://enz...") |
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12263 RXN-12263] == * common name: ** presqualene diphosphate synthase * ec number: ** [http://...") |
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[[Category:Reaction]] | [[Category:Reaction]] | ||
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object= | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12263 RXN-12263] == |
* common name: | * common name: | ||
− | ** | + | ** presqualene diphosphate synthase |
* ec number: | * ec number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/2.5.1.103 EC-2.5.1.103] |
* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
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== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
− | ** | + | ** 2 [[FARNESYL-PP]][c] '''=>''' 1 [[CPD-465]][c] '''+''' 1 [[PPI]][c] |
* With common name(s): | * With common name(s): | ||
− | ** | + | ** 2 (2E,6E)-farnesyl diphosphate[c] '''=>''' 1 presqualene diphosphate[c] '''+''' 1 diphosphate[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
− | * Gene: [[ | + | * Gene: [[DN21121_c0_g1_i4]] |
** Source: [[annotation-transcriptome]] | ** Source: [[annotation-transcriptome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
− | * Gene: [[ | + | * Gene: [[DN21121_c0_g1_i2]] |
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** Source: [[annotation-transcriptome]] | ** Source: [[annotation-transcriptome]] | ||
*** Assignment: EC-NUMBER | *** Assignment: EC-NUMBER | ||
== Pathways == | == Pathways == | ||
+ | * [[PWY-5875]], staphyloxanthin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5875 PWY-5875] | ||
+ | ** '''1''' reactions found over '''NA''' reactions in the full pathway | ||
+ | * [[PWY-6767]], 4,4'-diapolycopenedioate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6767 PWY-6767] | ||
+ | ** '''1''' reactions found over '''NA''' reactions in the full pathway | ||
+ | * [[PWY-7072]], hopanoid biosynthesis (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7072 PWY-7072] | ||
+ | ** '''1''' reactions found over '''NA''' reactions in the full pathway | ||
+ | * [[PWY-6105]], botryococcenes and methylated squalene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6105 PWY-6105] | ||
+ | ** '''1''' reactions found over '''NA''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* Category: [[annotation]] | * Category: [[annotation]] | ||
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*** Tool: [[pathwaytools]] | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
− | * | + | * LIGAND-RXN: |
− | ** [http://www. | + | ** [http://www.genome.jp/dbget-bin/www_bget?R00702 R00702] |
* UNIPROT: | * UNIPROT: | ||
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/O69445 O69445] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P36596 P36596] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/O65688 O65688] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/O23118 O23118] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/O22107 O22107] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/Q40472 Q40472] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/O22106 O22106] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P53800 P53800] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P53799 P53799] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P53798 P53798] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P29704 P29704] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/Q04903 Q04903] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/Q42761 Q42761] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/Q42760 Q42760] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P37268 P37268] |
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/Q02769 Q02769] |
− | + | {{#set: common name=presqualene diphosphate synthase}} | |
− | + | {{#set: ec number=EC-2.5.1.103}} | |
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− | {{#set: common name= | ||
− | {{#set: ec number=EC- | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
− | {{#set: gene associated= | + | {{#set: gene associated=DN21121_c0_g1_i4|DN21121_c0_g1_i2}} |
− | {{#set: in pathway=}} | + | {{#set: in pathway=PWY-5875|PWY-6767|PWY-7072|PWY-6105}} |
{{#set: reconstruction category=annotation}} | {{#set: reconstruction category=annotation}} | ||
{{#set: reconstruction source=annotation-transcriptome}} | {{#set: reconstruction source=annotation-transcriptome}} | ||
{{#set: reconstruction tool=pathwaytools}} | {{#set: reconstruction tool=pathwaytools}} |
Latest revision as of 14:22, 15 January 2021
Contents
Reaction RXN-12263
- common name:
- presqualene diphosphate synthase
- ec number:
- direction:
- LEFT-TO-RIGHT
- Synonym(s):
Reaction Formula
- With identifiers:
- 2 FARNESYL-PP[c] => 1 CPD-465[c] + 1 PPI[c]
- With common name(s):
- 2 (2E,6E)-farnesyl diphosphate[c] => 1 presqualene diphosphate[c] + 1 diphosphate[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: DN21121_c0_g1_i4
- Source: annotation-transcriptome
- Assignment: EC-NUMBER
- Source: annotation-transcriptome
- Gene: DN21121_c0_g1_i2
- Source: annotation-transcriptome
- Assignment: EC-NUMBER
- Source: annotation-transcriptome
Pathways
- PWY-5875, staphyloxanthin biosynthesis: PWY-5875
- 1 reactions found over NA reactions in the full pathway
- PWY-6767, 4,4'-diapolycopenedioate biosynthesis: PWY-6767
- 1 reactions found over NA reactions in the full pathway
- PWY-7072, hopanoid biosynthesis (bacteria): PWY-7072
- 1 reactions found over NA reactions in the full pathway
- PWY-6105, botryococcenes and methylated squalene biosynthesis: PWY-6105
- 1 reactions found over NA reactions in the full pathway
Reconstruction information
- Category: annotation
- Source: annotation-transcriptome
- Tool: pathwaytools
- Source: annotation-transcriptome
External links
- LIGAND-RXN:
- UNIPROT: