Difference between revisions of "TRYPSYN-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5184 RXN0-5184] == * common name: ** maltodextrin phosphorylase * ec number: ** [http://enzyme...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRYPSYN-RXN TRYPSYN-RXN] == * common name: ** tryptophan synthase * ec number: ** [http://enzyme.ex...")
 
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-5184 RXN0-5184] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRYPSYN-RXN TRYPSYN-RXN] ==
 
* common name:
 
* common name:
−
** maltodextrin phosphorylase
+
** tryptophan synthase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.4.1.1 EC-2.4.1.1]
+
** [http://enzyme.expasy.org/EC/4.2.1.20 EC-4.2.1.20]
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
Line 11: Line 11:
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[1-4-alpha-D-Glucan]][c] '''+''' 1 [[Pi]][c] '''=>''' 1 [[1-4-alpha-D-Glucan]][c] '''+''' 1 [[GLC-1-P]][c]
+
** 1 [[INDOLE-3-GLYCEROL-P]][c] '''+''' 1 [[SER]][c] '''=>''' 1 [[TRP]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[GAP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a 1,4-α-D-glucan[c] '''+''' 1 phosphate[c] '''=>''' 1 a 1,4-α-D-glucan[c] '''+''' 1 α-D-glucopyranose 1-phosphate[c]
+
** 1 (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate[c] '''+''' 1 L-serine[c] '''=>''' 1 L-tryptophan[c] '''+''' 1 H2O[c] '''+''' 1 D-glyceraldehyde 3-phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* Gene: [[DN22830_c0_g1_i1]]
+
* Gene: [[DN19913_c0_g1_i1]]
 
** Source: [[annotation-transcriptome]]
 
** Source: [[annotation-transcriptome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[DN22830_c0_g1_i3]]
+
* Gene: [[DN15376_c0_g1_i2]]
 
** Source: [[annotation-transcriptome]]
 
** Source: [[annotation-transcriptome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[DN13823_c0_g1_i1]]
+
* Gene: [[DN17689_c0_g1_i1]]
 
** Source: [[annotation-transcriptome]]
 
** Source: [[annotation-transcriptome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
−
* Gene: [[DN18971_c0_g1_i1]]
+
* Gene: [[DN15376_c0_g1_i1]]
−
** Source: [[annotation-transcriptome]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[DN15931_c0_g1_i1]]
 
−
** Source: [[annotation-transcriptome]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[DN16474_c0_g2_i1]]
 
−
** Source: [[annotation-transcriptome]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[DN8913_c0_g1_i1]]
 
−
** Source: [[annotation-transcriptome]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[DN8913_c0_g1_i2]]
 
−
** Source: [[annotation-transcriptome]]
 
−
*** Assignment: EC-NUMBER
 
−
* Gene: [[DN21046_c0_g1_i1]]
 
 
** Source: [[annotation-transcriptome]]
 
** Source: [[annotation-transcriptome]]
 
*** Assignment: EC-NUMBER
 
*** Assignment: EC-NUMBER
Line 50: Line 35:
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10533 10533]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R06050 R06050]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02722 R02722]
−
** [http://www.genome.jp/dbget-bin/www_bget?R01821 R01821]
 
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q9SD76 Q9SD76]
+
** [http://www.uniprot.org/uniprot/P11081 P11081]
−
** [http://www.uniprot.org/uniprot/P53537 P53537]
+
** [http://www.uniprot.org/uniprot/P14671 P14671]
−
** [http://www.uniprot.org/uniprot/Q42863 Q42863]
+
** [http://www.uniprot.org/uniprot/P13228 P13228]
−
** [http://www.uniprot.org/uniprot/P27598 P27598]
+
** [http://www.uniprot.org/uniprot/P18284 P18284]
−
** [http://www.uniprot.org/uniprot/O24363 O24363]
+
** [http://www.uniprot.org/uniprot/P43759 P43759]
−
** [http://www.uniprot.org/uniprot/P73546 P73546]
+
** [http://www.uniprot.org/uniprot/O84172 O84172]
−
** [http://www.uniprot.org/uniprot/P73511 P73511]
+
** [http://www.uniprot.org/uniprot/P11080 P11080]
−
** [http://www.uniprot.org/uniprot/P06738 P06738]
+
** [http://www.uniprot.org/uniprot/P16608 P16608]
−
** [http://www.uniprot.org/uniprot/P39123 P39123]
+
** [http://www.uniprot.org/uniprot/P18285 P18285]
−
** [http://www.uniprot.org/uniprot/P09812 P09812]
+
** [http://www.uniprot.org/uniprot/P16706 P16706]
−
** [http://www.uniprot.org/uniprot/P53535 P53535]
+
** [http://www.uniprot.org/uniprot/P12290 P12290]
−
** [http://www.uniprot.org/uniprot/Q9PSQ9 Q9PSQ9]
+
** [http://www.uniprot.org/uniprot/P42391 P42391]
−
** [http://www.uniprot.org/uniprot/P09811 P09811]
+
** [http://www.uniprot.org/uniprot/Q9PIF2 Q9PIF2]
−
** [http://www.uniprot.org/uniprot/Q00766 Q00766]
+
** [http://www.uniprot.org/uniprot/P12291 P12291]
−
** [http://www.uniprot.org/uniprot/Q7M385 Q7M385]
+
** [http://www.uniprot.org/uniprot/P42389 P42389]
−
** [http://www.uniprot.org/uniprot/P00489 P00489]
+
** [http://www.uniprot.org/uniprot/Q60179 Q60179]
−
** [http://www.uniprot.org/uniprot/P04045 P04045]
+
** [http://www.uniprot.org/uniprot/Q9PIF1 Q9PIF1]
−
** [http://www.uniprot.org/uniprot/P00490 P00490]
+
** [http://www.uniprot.org/uniprot/P07600 P07600]
−
** [http://www.uniprot.org/uniprot/P0AC86 P0AC86]
+
** [http://www.uniprot.org/uniprot/P07601 P07601]
−
** [http://www.uniprot.org/uniprot/Q9PKE6 Q9PKE6]
+
** [http://www.uniprot.org/uniprot/P06561 P06561]
−
** [http://www.uniprot.org/uniprot/Q9CHM8 Q9CHM8]
+
** [http://www.uniprot.org/uniprot/P56142 P56142]
−
** [http://www.uniprot.org/uniprot/P45180 P45180]
+
** [http://www.uniprot.org/uniprot/P06562 P06562]
−
** [http://www.uniprot.org/uniprot/Q9Z8N1 Q9Z8N1]
+
** [http://www.uniprot.org/uniprot/O27696 O27696]
−
** [http://www.uniprot.org/uniprot/O84250 O84250]
+
** [http://www.uniprot.org/uniprot/O28672 O28672]
−
** [http://www.uniprot.org/uniprot/P34114 P34114]
+
** [http://www.uniprot.org/uniprot/O66923 O66923]
−
** [http://www.uniprot.org/uniprot/P32811 P32811]
+
** [http://www.uniprot.org/uniprot/Q9JVC0 Q9JVC0]
−
** [http://www.uniprot.org/uniprot/P11216 P11216]
+
** [http://www.uniprot.org/uniprot/P43760 P43760]
−
** [http://www.uniprot.org/uniprot/P11217 P11217]
+
** [http://www.uniprot.org/uniprot/P34817 P34817]
−
** [http://www.uniprot.org/uniprot/P06737 P06737]
+
** [http://www.uniprot.org/uniprot/P34816 P34816]
−
{{#set: common name=maltodextrin phosphorylase}}
+
** [http://www.uniprot.org/uniprot/P17167 P17167]
−
{{#set: ec number=EC-2.4.1.1}}
+
** [http://www.uniprot.org/uniprot/P17166 P17166]
 +
** [http://www.uniprot.org/uniprot/P19868 P19868]
 +
** [http://www.uniprot.org/uniprot/P19867 P19867]
 +
** [http://www.uniprot.org/uniprot/P16578 P16578]
 +
** [http://www.uniprot.org/uniprot/P43283 P43283]
 +
** [http://www.uniprot.org/uniprot/P43284 P43284]
 +
** [http://www.uniprot.org/uniprot/Q57011 Q57011]
 +
** [http://www.uniprot.org/uniprot/P31204 P31204]
 +
** [http://www.uniprot.org/uniprot/Q01998 Q01998]
 +
** [http://www.uniprot.org/uniprot/Q01997 Q01997]
 +
** [http://www.uniprot.org/uniprot/P34793 P34793]
 +
** [http://www.uniprot.org/uniprot/P42390 P42390]
 +
** [http://www.uniprot.org/uniprot/P50909 P50909]
 +
** [http://www.uniprot.org/uniprot/Q42529 Q42529]
 +
** [http://www.uniprot.org/uniprot/P51382 P51382]
 +
** [http://www.uniprot.org/uniprot/P77960 P77960]
 +
** [http://www.uniprot.org/uniprot/Q59992 Q59992]
 +
** [http://www.uniprot.org/uniprot/O22765 O22765]
 +
** [http://www.uniprot.org/uniprot/O04225 O04225]
 +
** [http://www.uniprot.org/uniprot/P25269 P25269]
 +
** [http://www.uniprot.org/uniprot/O64991 O64991]
 +
** [http://www.uniprot.org/uniprot/O05625 O05625]
 +
** [http://www.uniprot.org/uniprot/O13831 O13831]
 +
** [http://www.uniprot.org/uniprot/Q9YGB0 Q9YGB0]
 +
** [http://www.uniprot.org/uniprot/Q9YGA9 Q9YGA9]
 +
** [http://www.uniprot.org/uniprot/Q9X7C8 Q9X7C8]
 +
** [http://www.uniprot.org/uniprot/P00931 P00931]
 +
** [http://www.uniprot.org/uniprot/P00929 P00929]
 +
** [http://www.uniprot.org/uniprot/P0A2K1 P0A2K1]
 +
** [http://www.uniprot.org/uniprot/P0A877 P0A877]
 +
** [http://www.uniprot.org/uniprot/P0A879 P0A879]
 +
{{#set: common name=tryptophan synthase}}
 +
{{#set: ec number=EC-4.2.1.20}}
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: gene associated=DN22830_c0_g1_i1|DN22830_c0_g1_i3|DN13823_c0_g1_i1|DN18971_c0_g1_i1|DN15931_c0_g1_i1|DN16474_c0_g2_i1|DN8913_c0_g1_i1|DN8913_c0_g1_i2|DN21046_c0_g1_i1}}
+
{{#set: gene associated=DN19913_c0_g1_i1|DN15376_c0_g1_i2|DN17689_c0_g1_i1|DN15376_c0_g1_i1}}
 
{{#set: in pathway=}}
 
{{#set: in pathway=}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction source=annotation-transcriptome}}
 
{{#set: reconstruction source=annotation-transcriptome}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Latest revision as of 14:22, 15 January 2021

Reaction TRYPSYN-RXN

  • common name:
    • tryptophan synthase
  • ec number:
  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate[c] + 1 L-serine[c] => 1 L-tryptophan[c] + 1 H2O[c] + 1 D-glyceraldehyde 3-phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





Retrieved from "http://gem-aureme.genouest.org//ucomgem/index.php?title=TRYPSYN-RXN&oldid=9050"