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Automatic reconstruction with AuReMe

Model summary: summary

Download AuReMe Input/Output [LINK OR MEDIA data]

The automatic reconstruction of Fibrobacter succinogene S85 results to a Genome scale Model containing 1565 reactions, 1586 metabolites, 1317 genes and 931 pathways. This GeM was obtained based on the following sources:

• Based on annotation data:
  • Creation of a metabolic network containing 827 reactions
• Based on orthology data:
  • Creation of a global metabolic network containing 377 reactions
• Based on expertise:
  • 490 reaction(s) added
• Based on gap-filling:
  • • 75 reaction(s) added

• List of tools used:
  • Tool: PathwayTools
  • Tool: Orthofinder

• • Tool: Meneco

Collaborative curation

• Suggest reactions to add or remove:
  • Download this form
• Suggest new reactions to create and add:
  • Download this form
• Follow the examples given in the form(s) to correctly share your suggestions
• Send the filled form(s) to: gem-aureme[at]inria.fr