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Automatic reconstruction with AuReMe

Model summary: summary

Download AuReMe Input/Output [LINK OR MEDIA data]

The automatic reconstruction of Ruminococcus flavefaciens results to a Genome scale Model containing 1453 reactions, 1373 metabolites, 828 genes and 756 pathways. This GeM was obtained based on the following sources:

• Based on annotation data:
  • Creation of a metabolic network containing 919 reactions
• Based on orthology data:
  • Creation of a global metabolic network containing 676 reactions
    • From template faecalibacteriumprausnitziia2-165_heinken2014 creation of a metabolic network containing: 315 reactions
    • From template l_plantarum_wcfs1 creation of a metabolic network containing: 211 reactions
    • From template bthetaiotaomicron_heinken2013 creation of a metabolic network containing: 296 reactions
    • From template ecoli creation of a metabolic network containing: 448 reactions
    • From template bifidobacteriumadolescentisl2-32 creation of a metabolic network containing: 214 reactions
• Based on expertise:
  • 118 reaction(s) added

• List of tools used:
  • Tool: PathwayTools
  • Tool: Pantograph

Collaborative curation

• Suggest reactions to add or remove:
  • Download this form
• Suggest new reactions to create and add:
  • Download this form
• Follow the examples given in the form(s) to correctly share your suggestions
• Send the filled form(s) to: gem-aureme[at]inriaa.fr