### LOG ###
aureme --run=chondrus --cmd="check_input"
aureme --run=chondrus --cmd="annotation_based"
aureme --run=chondrus --cmd="orthology_based"
aureme --run=chondrus --cmd="draft"
aureme --run=chondrus --cmd="get_compart NETWORK=draft"
aureme --run=chondrus --cmd="curation NETWORK=draft NEW_NETWORK=draft_curated DATA=biomass_reaction.csv"
aureme --run=chondrus --cmd="curation NETWORK=draft_curated DATA=new_reactions_curation.csv"
aureme --run=chondrus --cmd="curation NETWORK=draft_curated DATA=reactions_to_add.csv"
aureme --run=chondrus --cmd="set_medium NETWORK=draft_curated NEW_NETWORK=draft_medium"
aureme --run=chondrus --cmd="gap_filling NETWORK=draft_medium NEW_NETWORK=draft_gapfilled"
aureme --run=chondrus --cmd="curation NETWORK=draft_gapfilled NEW_NETWORK=chondrus_1.0 DATA=ala_dehy.csv"
aureme --run=chondrus --cmd="curation NETWORK=chondrus_1.0 NEW_NETWORK=chondrus_1.1 DATA=pathmodel_inference.csv"
aureme --run=chondrus --cmd="curation NETWORK=chondrus_1.1 NEW_NETWORK=chondrus_1.2 DATA=pathmodel_inference_new_rxn.csv"
aureme --run=chondrus --cmd="curation NETWORK=chondrus_1.2 NEW_NETWORK=chondrus_1.3 DATA=pathmodel_inference_new_rxn_2.csv"
aureme --run=chondrus --cmd="set_fba NETWORK=chondrus_1.3 ID=biomass_rxn"
aureme --run=chondrus --cmd="summary NETWORK=chondrus_1.3"
aureme --run=chondrus --cmd="wiki_pages NETWORK=chondrus_1.3"