Manual
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Common name
Ec number
Reconstruction category
Reconstruction tool
Reconstruction source
Reconstruction comment
Gene associated
In pathway
3-PHOSPHOGLYCERATE-PHOSPHATASE-RXN
EC-3.1.3.38
Manual
Manual-reactions to add
Added to produce glycerate
ALANINE-DEHYDROGENASE-RXN
EC-1.4.1.1
Manual
Manual-ala dehy
Added for fba
CHC T00008930001
PWY1-2
ARGININE-2-MONOOXYGENASE-RXN
EC-1.13.12.1
Manual
Manual-reactions to add
Is an essential reaction of e.siliculosus
ARGDEG-V-PWY
Biomass rxn
Manual
Manual-biomass reaction
Forfba
C-22 sterol desaturase
Manual
Manual-new reactions curation
Ab initio inference
FMO
CYP
Exchange BIOMASS
Manual
Manual-biomass reaction
Exchange biomass to boundary
ExchangeSeed ADENOSYLCOBALAMIN
Manual
Manual-import from medium
Added to manage seeds from boundary to extracellular compartment
ExchangeSeed AMMONIA
Manual
Manual-import from medium
Added to manage seeds from boundary to extracellular compartment
ExchangeSeed BIOTIN
Manual
Manual-import from medium
Added to manage seeds from boundary to extracellular compartment
ExchangeSeed CA+2
Manual
Manual-import from medium
Added to manage seeds from boundary to extracellular compartment
ExchangeSeed CARBON-DIOXIDE
Manual
Manual-import from medium
Added to manage seeds from boundary to extracellular compartment
ExchangeSeed CL-
Manual
Manual-import from medium
Added to manage seeds from boundary to extracellular compartment
ExchangeSeed CO+2
Manual
Manual-import from medium
Added to manage seeds from boundary to extracellular compartment
ExchangeSeed COB-I-ALAMIN
Manual
Manual-import from medium
Added to manage seeds from boundary to extracellular compartment
ExchangeSeed CPD-3
Manual
Manual-import from medium
Added to manage seeds from boundary to extracellular compartment
ExchangeSeed CPD-315
Manual
Manual-import from medium
Added to manage seeds from boundary to extracellular compartment
ExchangeSeed CU+
Manual
Manual-import from medium
Added to manage seeds from boundary to extracellular compartment
ExchangeSeed CU+2
Manual
Manual-import from medium
Added to manage seeds from boundary to extracellular compartment
ExchangeSeed EDTA
Manual
Manual-import from medium
Added to manage seeds from boundary to extracellular compartment
ExchangeSeed FE+2
Manual
Manual-import from medium
Added to manage seeds from boundary to extracellular compartment
ExchangeSeed FE+3
Manual
Manual-import from medium
Added to manage seeds from boundary to extracellular compartment
ExchangeSeed K+
Manual
Manual-import from medium
Added to manage seeds from boundary to extracellular compartment
ExchangeSeed Light
Manual
Manual-import from medium
Added to manage seeds from boundary to extracellular compartment
ExchangeSeed MG+2
Manual
Manual-import from medium
Added to manage seeds from boundary to extracellular compartment
ExchangeSeed MN+2
Manual
Manual-import from medium
Added to manage seeds from boundary to extracellular compartment
ExchangeSeed NA+
Manual
Manual-import from medium
Added to manage seeds from boundary to extracellular compartment
ExchangeSeed NITRATE
Manual
Manual-import from medium
Added to manage seeds from boundary to extracellular compartment
ExchangeSeed OXYGEN-MOLECULE
Manual
Manual-import from medium
Added to manage seeds from boundary to extracellular compartment
ExchangeSeed PROTON
Manual
Manual-import from medium
Added to manage seeds from boundary to extracellular compartment
ExchangeSeed SULFATE
Manual
Manual-import from medium
Added to manage seeds from boundary to extracellular compartment
ExchangeSeed THIAMINE
Manual
Manual-import from medium
Added to manage seeds from boundary to extracellular compartment
ExchangeSeed WATER
Manual
Manual-import from medium
Added to manage seeds from boundary to extracellular compartment
ExchangeSeed ZN+2
Manual
Manual-import from medium
Added to manage seeds from boundary to extracellular compartment
Extended 1.14.13.70-RXN
Manual
Manual-pathmodel inference new rxn 2
C14 demethylation
CHC T00009303001 1
Late SSR
Early SSR
Extended 1.14.13.72-RXN 4alpha METHYLZYMOSTEROL
Manual
Manual-pathmodel inference new rxn 2
C4 c28 demethylation
Scaffold212
CHC T00010320001
Late SSR
Early SSR
Extended 1.14.13.72-RXN CYCLOARTENOL
Manual
Manual-pathmodel inference new rxn 2
C4 c29 demethylation
CHC T00010320001 1
Scaffold212
Late SSR
Early SSR
Extended 2.1.1.143-RXN CPD-707
Manual
Manual-pathmodel inference new rxn 2
C24' methyltransferase
CHC T00000837001
CHC T00009101001
Extended 2.1.1.143-RXN DESMOSTEROL-CPD
Manual
Manual-pathmodel inference new rxn 2
C24 methyltransferase
CHC T00000837001
CHC T00009101001
Extended CYCLOEUCALENOL-CYCLOISOMERASE-RXN
Manual
Manual-pathmodel inference new rxn 2
Cyclopropylsterol isomerisation
CHC T00002985001 1
Late SSR
Early SSR
Extended PHOSPHASERDECARB-RXN CPD-18778
Manual
Manual-pathmodel inference new rxn
Carreto2011;ab initio
CHC T00008892001
Extended PHOSPHASERDECARB-RXN PORPHYRA-334
Manual
Manual-pathmodel inference new rxn
Carreto2011;ab initio
CHC T00008892001
Extended RXN-17371
Manual
Manual-pathmodel inference new rxn
Carreto2011;ab initio
Scaffold115 53074 54093
Extended RXN-4144
Manual
Manual-pathmodel inference new rxn 2
C14 reduction
CHC T00003466001 1
Late SSR
Early SSR
Extended RXN-4243
Manual
Manual-pathmodel inference new rxn
Ab initio inference
FMO
CYP
Extended RXN3O-203
Manual
Manual-pathmodel inference new rxn 2
C8 isomerase
CHC T00001257001 1
Late SSR
Early SSR
Extended RXN3O-218
Manual
Manual-pathmodel inference new rxn 2
Delta7reduction
CHC T00006492-3001
Late SSR
Early SSR
Extended RXN66-28 5A CHOLESTA-7-24-DIENOL
Manual
Manual-pathmodel inference new rxn 2
Delta24 25 reduction
CHC T00002789001 1
Late SSR
Extended RXN66-28 CYCLOARTENOL
Manual
Manual-pathmodel inference new rxn 2
Delta24 25 reduction
CHC T00002789001 1
Early SSR
GUANIDINOBUTYRASE-RXN
EC-3.5.3.7
Manual
Manual-reactions to add
Is an essential reaction of e.siliculosus
ARGDEG-V-PWY
PWY-7523
PWY-5742
ARGDEG-IV-PWY
MANNITOL-1-PHOSPHATASE-RXN
EC-3.1.3.22
Manual
Manual-reactions to add
Is an essential reaction of e.siliculosus
PWY-3881
PWY-6531
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