Manual

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 Common nameEc numberReconstruction categoryReconstruction toolReconstruction sourceReconstruction commentGene associatedIn pathway
3-PHOSPHOGLYCERATE-PHOSPHATASE-RXNEC-3.1.3.38ManualManual-reactions to addAdded to produce glycerate
ALANINE-DEHYDROGENASE-RXNEC-1.4.1.1ManualManual-ala dehyAdded for fbaCHC T00008930001PWY1-2
ARGININE-2-MONOOXYGENASE-RXNEC-1.13.12.1ManualManual-reactions to addIs an essential reaction of e.siliculosusARGDEG-V-PWY
Biomass rxnManualManual-biomass reactionForfba
C-22 sterol desaturaseManualManual-new reactions curationAb initio inferenceFMO
CYP
Exchange BIOMASSManualManual-biomass reactionExchange biomass to boundary
ExchangeSeed ADENOSYLCOBALAMINManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed AMMONIAManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed BIOTINManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed CA+2ManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed CARBON-DIOXIDEManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed CL-ManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed CO+2ManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed COB-I-ALAMINManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed CPD-3ManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed CPD-315ManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed CU+ManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed CU+2ManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed EDTAManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed FE+2ManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed FE+3ManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed K+ManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed LightManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed MG+2ManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed MN+2ManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed NA+ManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed NITRATEManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed OXYGEN-MOLECULEManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed PROTONManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed SULFATEManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed THIAMINEManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed WATERManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
ExchangeSeed ZN+2ManualManual-import from mediumAdded to manage seeds from boundary to extracellular compartment
Extended 1.14.13.70-RXNManualManual-pathmodel inference new rxn 2C14 demethylationCHC T00009303001 1Late SSR
Early SSR
Extended 1.14.13.72-RXN 4alpha METHYLZYMOSTEROLManualManual-pathmodel inference new rxn 2C4 c28 demethylationScaffold212
CHC T00010320001
Late SSR
Early SSR
Extended 1.14.13.72-RXN CYCLOARTENOLManualManual-pathmodel inference new rxn 2C4 c29 demethylationCHC T00010320001 1
Scaffold212
Late SSR
Early SSR
Extended 2.1.1.143-RXN CPD-707ManualManual-pathmodel inference new rxn 2C24' methyltransferaseCHC T00000837001
CHC T00009101001
Extended 2.1.1.143-RXN DESMOSTEROL-CPDManualManual-pathmodel inference new rxn 2C24 methyltransferaseCHC T00000837001
CHC T00009101001
Extended CYCLOEUCALENOL-CYCLOISOMERASE-RXNManualManual-pathmodel inference new rxn 2Cyclopropylsterol isomerisationCHC T00002985001 1Late SSR
Early SSR
Extended PHOSPHASERDECARB-RXN CPD-18778ManualManual-pathmodel inference new rxnCarreto2011;ab initioCHC T00008892001
Extended PHOSPHASERDECARB-RXN PORPHYRA-334ManualManual-pathmodel inference new rxnCarreto2011;ab initioCHC T00008892001
Extended RXN-17371ManualManual-pathmodel inference new rxnCarreto2011;ab initioScaffold115 53074 54093
Extended RXN-4144ManualManual-pathmodel inference new rxn 2C14 reductionCHC T00003466001 1Late SSR
Early SSR
Extended RXN-4243ManualManual-pathmodel inference new rxnAb initio inferenceFMO
CYP
Extended RXN3O-203ManualManual-pathmodel inference new rxn 2C8 isomeraseCHC T00001257001 1Late SSR
Early SSR
Extended RXN3O-218ManualManual-pathmodel inference new rxn 2Delta7reductionCHC T00006492-3001Late SSR
Early SSR
Extended RXN66-28 5A CHOLESTA-7-24-DIENOLManualManual-pathmodel inference new rxn 2Delta24 25 reductionCHC T00002789001 1Late SSR
Extended RXN66-28 CYCLOARTENOLManualManual-pathmodel inference new rxn 2Delta24 25 reductionCHC T00002789001 1Early SSR
GUANIDINOBUTYRASE-RXNEC-3.5.3.7ManualManual-reactions to addIs an essential reaction of e.siliculosusARGDEG-V-PWY
PWY-7523
PWY-5742
ARGDEG-IV-PWY
MANNITOL-1-PHOSPHATASE-RXNEC-3.1.3.22ManualManual-reactions to addIs an essential reaction of e.siliculosusPWY-3881
PWY-6531
... further results