############# Model summary Number of compounds: 3316 Number of reactions: 3402 Number of genes: 5372 Ratio rxn with genes/rxns: 96.00235155790712% ############# Analyzing targets #Topological analysis Number of targets: 30 #Flux Balance Analysis TRP_c // TRP_c 395.8333333333336 positive TYR_c // TYR_c 949.9999999999999 positive GLN_c // GLN_c 881.5789473684206 positive GLYCEROL_c // GLYCEROL_c 1000.0 positive PHE_c // PHE_c 723.6842105263152 positive LYS_c // LYS_c 504.2181069958846 positive THR_c // THR_c 1000.0 positive MET_c // MET_c 403.77408993576006 positive ASN_c // ASN_c 980.0000000000003 positive CIT_c // CIT_c 1000.0 positive CYS_c // CYS_c 524.8344370860925 positive GLT_c // GLT_c 1000.0 positive GLY_c // GLY_c 1000.0 positive GLYCERATE_c // GLYCERATE_c 1000.0 positive GLYCOLLATE_c // GLYCOLLATE_c 999.9999999999999 positive PRO_c // PRO_c 999.9999999999999 positive SER_c // SER_c 1000.0 positive HIS_c // HIS_c 365.38461538461553 positive ILE_c // ILE_c 641.8281822943947 positive L__45__ALPHA__45__ALANINE_c // L-ALPHA-ALANINE_c 1000.0 positive L__45__ORNITHINE_c // L-ORNITHINE_c 580.5882352941181 positive LEU_c // LEU_c 659.7593582887706 positive MANNITOL_c // MANNITOL_c 1000.0 positive VAL_c // VAL_c 817.9238985313777 positive 4__45__AMINO__45__BUTYRATE_c // 4-AMINO-BUTYRATE_c 999.1071428571418 positive ARG_c // ARG_c 375.0000000000001 positive GLC_c // GLC_c 1000.0 positive L__45__ASPARTATE_c // L-ASPARTATE_c 1000.0 positive SUC_c // SUC_c 1000.0 positive THREO__45__DS__45__ISO__45__CITRATE_c // THREO-DS-ISO-CITRATE_c 1000.0 positive ############# Computing optimization Testing reaction biomass_rxn Growth rate: 3.5568722908827297 Status: optimal IN FLUXES OUT FLUXES OBJECTIVES ------------------ --------------- ----------------- PROTON_e 1e+03 BIOMASS_e 3.56 biomass_rxn 3.56 WATER_e 1e+03 Light_e 500 NITRATE_e 429 SULFATE_e 2.13 FVA analysis: Blocked reactions: 2329 Essential reactions: 46 TIGLYLCOA__45__HYDROXY__45__RXN GLUTAMINESYN__45__RXN ORNITHINE__45__CYCLODEAMINASE__45__RXN biomass_rxn IGPSYN__45__RXN METHYLACETOACETYLCOATHIOL__45__RXN Exchange_BIOMASS HOMOSERDEHYDROG__45__RXN 2__45__MEBUCOA__45__FAD__45__RXN SHIKIMATE__45__5__45__DEHYDROGENASE__45__RXN PRTRANS__45__RXN TransportSeed__45__SULFATE SULFATE__45__ADENYLYLTRANS__45__RXN 1__46__1__46__1__46__178__45__RXN DAHPSYN__45__RXN ANTHRANSYN__45__RXN 3__45__DEHYDROQUINATE__45__DEHYDRATASE__45__RXN BRANCHED__45__CHAINAMINOTRANSFERILEU__45__RXN ACETOLACTREDUCTOISOM__45__RXN IMPCYCLOHYDROLASE__45__RXN ASPARTATE__45__SEMIALDEHYDE__45__DEHYDROGENASE__45__RXN RXN__45__7790 GLUTDECARBOX__45__RXN 3__45__DEHYDROQUINATE__45__SYNTHASE__45__RXN BRANCHED__45__CHAINAMINOTRANSFERVAL__45__RXN DIHYDRODIPICSYN__45__RXN DIAMINOPIMDECARB__45__RXN BRANCHED__45__CHAINAMINOTRANSFERLEU__45__RXN PRAISOM__45__RXN Transport_BIOMASS HISTAMINOTRANS__45__RXN CHORISMATE__45__SYNTHASE__45__RXN ASPARTATEKIN__45__RXN ExchangeSeed__45__SULFATE GLYOXYLATE__45__REDUCTASE__45__NADP__43____45__RXN RXN__45__13158 HISTPRATPHYD__45__RXN DIHYDROXYISOVALDEHYDRAT__45__RXN 2__46__5__46__1__46__19__45__RXN HISTCYCLOHYD__45__RXN RXN__45__14014 CHORISMATEMUT__45__RXN ADENYLOSUCCINATE__45__SYNTHASE__45__RXN DIAMINOPIMEPIM__45__RXN SHIKIMATE__45__KINASE__45__RXN RXN__45__7737 Essential genes: 21 30/30 compounds with positive flux 0/30 compounds without flux TRP_c // TRP_c 1000.0 positive TYR_c // TYR_c 999.9999999999995 positive GLN_c // GLN_c 82.39055582882439 positive GLYCEROL_c // GLYCEROL_c 712.5506072874509 positive PHE_c // PHE_c 1000.0000000000014 positive LYS_c // LYS_c 1000.000000000006 positive THR_c // THR_c 1000.0000000000005 positive MET_c // MET_c 999.9999999999999 positive ASN_c // ASN_c 999.9999999999986 positive CIT_c // CIT_c 126.77151333947938 positive CYS_c // CYS_c 1000.0 positive GLT_c // GLT_c 123.7842617152962 positive GLY_c // GLY_c 394.7368421052632 positive GLYCERATE_c // GLYCERATE_c 1000.0000000000002 positive GLYCOLLATE_c // GLYCOLLATE_c 999.9999999999998 positive PRO_c // PRO_c 740.7407407407406 positive SER_c // SER_c 437.81094527363194 positive HIS_c // HIS_c 1000.0 positive ILE_c // ILE_c 999.9999999999989 positive L__45__ALPHA__45__ALANINE_c // L-ALPHA-ALANINE_c 48.521303258145366 positive L__45__ORNITHINE_c // L-ORNITHINE_c 1000.0000000000002 positive LEU_c // LEU_c 1000.0000000000017 positive MANNITOL_c // MANNITOL_c 3.817471002142086 positive VAL_c // VAL_c 962.2634100369116 positive 4__45__AMINO__45__BUTYRATE_c // 4-AMINO-BUTYRATE_c 1000.0000000000003 positive ARG_c // ARG_c 999.9999999999989 positive GLC_c // GLC_c 1000.0 positive L__45__ASPARTATE_c // L-ASPARTATE_c 200.0 positive SUC_c // SUC_c 1000.0000000000006 positive THREO__45__DS__45__ISO__45__CITRATE_c // THREO-DS-ISO-CITRATE_c 261.1939648639613 positive