############# Model summary Number of compounds: 2140 Number of reactions: 1987 Number of genes: 2288 Ratio rxn with genes/rxns: 79.4162053346754% ############# Analyzing targets #Topological analysis Number of targets: 50 #Flux Balance Analysis CPD__45__8117_c // CPD-8117_c 8.747065492304438 positive LEU_c // LEU_c 54.83845991747758 positive DOCOSANOATE_c // DOCOSANOATE_c 9.027736470898583 positive CIT_c // CIT_c 571.428571428572 positive GLC_c // GLC_c 1000.0 positive CPD__45__8120_c // CPD-8120_c 7.970102367281581 positive PALMITATE_c // PALMITATE_c 12.84765841850161 positive SER_c // SER_c 1000.0 positive OLEATE__45__CPD_c // OLEATE-CPD_c 10.263984878949625 positive GLT_c // GLT_c 762.6323516955135 positive CPD__45__12653_c // CPD-12653_c 0.0 NULL L__45__ALPHA__45__ALANINE_c // L-ALPHA-ALANINE_c 488.7159818069407 positive LINOLENIC_ACID_c // LINOLENIC_ACID_c 0.0 NULL HIS_c // HIS_c 265.36416250622597 positive ARG_c // ARG_c 146.2846587918479 positive VAL_c // VAL_c 78.97051867950879 positive SUC_c // SUC_c 799.9999999999967 positive PHE_c // PHE_c 46.619337369965045 positive GLUTATHIONE_c // GLUTATHIONE_c 50.57762417974673 positive THREO__45__DS__45__ISO__45__CITRATE_c // THREO-DS-ISO-CITRATE_c 571.4285714285716 positive 5Z8Z11Z14Z17Z__45__EICOSAPENTAENOATE_c // 5Z8Z11Z14Z17Z-EICOSAPENTAENOATE_c 12.012446693410677 positive L__45__ASPARTATE_c // L-ASPARTATE_c 957.569454275714 positive TYR_c // TYR_c 64.35613576421548 positive LINOLEIC_ACID_c // LINOLEIC_ACID_c 9.445006582483035 positive THR_c // THR_c 589.1182264825264 positive CPD__45__8121_c // CPD-8121_c 0.0 NULL CPD__45__9247_c // CPD-9247_c 11.681634057652062 positive CYS_c // CYS_c 48.10075381358478 positive STEARIC_ACID_c // STEARIC_ACID_c 11.238475174181989 positive HOMO__45__SER_c // HOMO-SER_c 589.1182264825277 positive LYS_c // LYS_c 65.9663920932105 positive ARACHIDONIC_ACID_c // ARACHIDONIC_ACID_c 11.544335646361002 positive TRP_c // TRP_c 44.50688806567399 positive ILE_c // ILE_c 54.838459917477635 positive GLY_c // GLY_c 1000.0 positive CPD__45__9245_c // CPD-9245_c 13.430099056679248 positive 4__45__AMINO__45__BUTYRATE_c // 4-AMINO-BUTYRATE_c 52.87056933548318 positive GLYCOLLATE_c // GLYCOLLATE_c 1000.0 positive ASN_c // ASN_c 495.84527520336195 positive MANNITOL_c // MANNITOL_c 712.3542296036444 positive Eicosadienoates_c // Eicosadienoates_c 8.582151457081324 positive MET_c // MET_c 31.31405439829762 positive L__45__ORNITHINE_c // L-ORNITHINE_c 100.25543583720582 positive PRO_c // PRO_c 107.67307504030587 positive GLYCEROL_c // GLYCEROL_c 417.553219228117 positive GLN_c // GLN_c 436.6340973007399 positive CPD__45__7836_c // CPD-7836_c 14.994673672207606 positive AMMONIUM_c // AMMONIUM_c 1000.0 positive GLYCERATE_c // GLYCERATE_c 1000.0 positive ARACHIDIC_ACID_c // ARACHIDIC_ACID_c 9.987526567024897 positive ############# Computing optimization Testing reaction biomass_rxn Growth rate: 3.017501508750755 Status: optimal IN FLUXES OUT FLUXES OBJECTIVES ------------------------- ---------------- ----------------- AMMONIA_e 864 PROTON_e 1e+03 biomass_rxn 3.02 WATER_e 319 BIOMASS_e 3.02 SULFATE_e 1.81 OXYGEN__45__... 0.0302 FVA analysis: Blocked reactions: 1392 Essential reactions: 63 Exchange_BIOMASS 2__45__ISOPROPYLMALATESYN__45__RXN SHIKIMATE__45__5__45__DEHYDROGENASE__45__RXN BRANCHED__45__CHAINAMINOTRANSFERVAL__45__RXN GLUTAMIDOTRANS__45__RXN HISTAMINOTRANS__45__RXN ACETOLACTSYN__45__RXN DIAMINOPIMDECARB__45__RXN HISTCYCLOHYD__45__RXN ATPPHOSPHORIBOSYLTRANS__45__RXN AMPSYN__45__RXN HOMOSERDEHYDROG__45__RXN IMPCYCLOHYDROLASE__45__RXN DIAMINOPIMEPIM__45__RXN TransportSeed_OXYGEN__45__MOLECULE 3__45__DEHYDROQUINATE__45__SYNTHASE__45__RXN HOMOSERKIN__45__RXN 2__46__5__46__1__46__19__45__RXN DAHPSYN__45__RXN ARGININE__45__2__45__MONOOXYGENASE__45__RXN ANTHRANSYN__45__RXN SHIKIMATE__45__KINASE__45__RXN IGPSYN__45__RXN ALDOSE__45__1__45__EPIMERASE__45__RXN ExchangeSeed_OXYGEN__45__MOLECULE PREPHENATEDEHYDRAT__45__RXN DIHYDROXYISOVALDEHYDRAT__45__RXN ADENYLOSUCCINATE__45__SYNTHASE__45__RXN AICARTRANSFORM__45__RXN GUANIDINOBUTANAMIDE__45__NH3__45__RXN PRPPSYN__45__RXN Transport_BIOMASS ExchangeSeed_SULFATE THRESYN__45__RXN GUANIDINOBUTYRASE__45__RXN PRTRANS__45__RXN GLUTAMINESYN__45__RXN IMIDPHOSDEHYD__45__RXN BRANCHED__45__CHAINAMINOTRANSFERILEU__45__RXN SULFATE__45__ADENYLYLTRANS__45__RXN RXN__45__7737 MANNITOL__45__1__45__PHOSPHATASE__45__RXN CHORISMATE__45__SYNTHASE__45__RXN ADENYLYLSULFATE__45__REDUCTASE__45__RXN RXN__45__14014 PRAISOM__45__RXN BRANCHED__45__CHAINAMINOTRANSFERLEU__45__RXN ASPARTATE__45__SEMIALDEHYDE__45__DEHYDROGENASE__45__RXN DIHYDRODIPICSYN__45__RXN METHENYLTHFCYCLOHYDRO__45__RXN RXN__45__11811 MANNPDEHYDROG__45__RXN TransportSeed_SULFATE TransportSeed_AMMONIA biomass_rxn 3__45__DEHYDROQUINATE__45__DEHYDRATASE__45__RXN PRIBFAICARPISOM__45__RXN HISTPRATPHYD__45__RXN ExchangeSeed_AMMONIA ARGINASE__45__RXN ACETOLACTREDUCTOISOM__45__RXN CHORISMATEMUT__45__RXN ASPARTATEKIN__45__RXN Essential genes: 33 30/30 compounds with positive flux 0/30 compounds without flux GLYCOLLATE_c // GLYCOLLATE_c 1000.0 positive PHE_c // PHE_c 133.1981067713753 positive THR_c // THR_c 906.3357330500438 positive GLT_c // GLT_c 40.45794969206965 positive GLY_c // GLY_c 303.3712620182903 positive L__45__ALPHA__45__ALANINE_c // L-ALPHA-ALANINE_c 18.372781270937708 positive L__45__ORNITHINE_c // L-ORNITHINE_c 997.5690141683953 positive GLYCEROL_c // GLYCEROL_c 175.81188178026989 positive CIT_c // CIT_c 29.59926297835183 positive GLC_c // GLC_c 724.2440702516749 positive ILE_c // ILE_c 274.1922995876514 positive VAL_c // VAL_c 92.90649256412739 positive L__45__ASPARTATE_c // L-ASPARTATE_c 76.60555634205703 positive LYS_c // LYS_c 188.47540598068014 positive MANNITOL_c // MANNITOL_c 2.149529962593435 positive PRO_c // PRO_c 79.75783336319965 positive SUC_c // SUC_c 911.1617312072872 positive ARG_c // ARG_c 998.6614935420115 positive MET_c // MET_c 104.38018132765804 positive ASN_c // ASN_c 661.1270336044823 positive GLN_c // GLN_c 40.80692498137725 positive THREO__45__DS__45__ISO__45__CITRATE_c // THREO-DS-ISO-CITRATE_c 60.98490623570667 positive HIS_c // HIS_c 999.1192735274848 positive TRP_c // TRP_c 387.016417962382 positive TYR_c // TYR_c 514.8490861145087 positive LEU_c // LEU_c 182.79486639159094 positive 4__45__AMINO__45__BUTYRATE_c // 4-AMINO-BUTYRATE_c 999.5006829074622 positive CYS_c // CYS_c 160.3358460458489 positive GLYCERATE_c // GLYCERATE_c 999.9999999999995 positive SER_c // SER_c 363.8262784916355 positive