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      <species metaid="M_CTP_c" id="M_CTP_c" name="CTP" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C9H12N3O14P3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 479.1268</p>
            <p>smiles: Nc1ccn([C@@H]2O[C@H](COP([O-])(=O)OP([O-])(=O)OP([O-])([O-])=O)[C@@H](O)[C@H]2O)c(=O)n1</p>
            <p>inchikey: PCDQPRRSZKQHHS-XVFCMESISA-J</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CTP_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C9H16N3O14P3/c10-5-1-2-12(9(15)11-5)8-7(14)6(13)4(24-8)3-23-28(19,20)26-29(21,22)25-27(16,17)18/h1-2,4,6-8,13-14H,3H2,(H,19,20)(H,21,22)(H2,10,11,15)(H2,16,17,18)/p-4/t4-,6-,7-,8-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CARBAMOYL__45__P_c" id="M_CARBAMOYL__45__P_c" name="carbamoyl phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="CH2NO5P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 139.0051</p>
            <p>smiles: NC(=O)OP([O-])([O-])=O</p>
            <p>inchikey: FFQKYPRQEYGKAF-UHFFFAOYSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CARBAMOYL__45__P_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/CH4NO5P/c2-1(3)7-8(4,5)6/h(H2,2,3)(H2,4,5,6)/p-2"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_WATER_c" id="M_WATER_c" name="H2O" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 18.0153</p>
            <p>smiles: [H]O[H]</p>
            <p>inchikey: XLYOFNOQVPJJNP-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_WATER_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/H2O/h1H2"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_L__45__CITRULLINE_c" id="M_L__45__CITRULLINE_c" name="L-citrulline" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13N3O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 175.1857</p>
            <p>smiles: NC(=O)NCCC[C@H]([NH3+])C([O-])=O</p>
            <p>inchikey: RHGKLRLOHDJJDR-BYPYZUCNSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_L__45__CITRULLINE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C6H13N3O3/c7-4(5(10)11)2-1-3-9-6(8)12/h4H,1-3,7H2,(H,10,11)(H3,8,9,12)/t4-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_2__45__3__45__4__45__Saturated__45__L__45__Phosphatidates_c" id="M_2__45__3__45__4__45__Saturated__45__L__45__Phosphatidates_c" name="a 2,3,4-saturated L-phosphatidate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H16N3O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 286.2618</p>
            <p>smiles: [NH3+][C@@H](CC([O-])=O)C(=O)NCC(=O)N1CCC[C@H]1C([O-])=O</p>
            <p>inchikey: POTCZYQVVNXUIG-BQBZGAKWSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_2__45__3__45__4__45__Saturated__45__L__45__Phosphatidates_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C11H17N3O6/c12-6(4-9(16)17)10(18)13-5-8(15)14-3-1-2-7(14)11(19)20/h6-7H,1-5,12H2,(H,13,18)(H,16,17)(H,19,20)/p-1/t6-,7-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CO__45__A_c" id="M_CO__45__A_c" name="coenzyme A" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C21H32N7O16P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 763.505</p>
            <p>smiles: CC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12)[C@@H](O)C(=O)NCCC(=O)NCCS</p>
            <p>inchikey: RGJOEKWQDUBAIZ-IBOSZNHHSA-J</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CO__45__A_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C21H36N7O16P3S/c1-21(2,16(31)19(32)24-4-3-12(29)23-5-6-48)8-41-47(38,39)44-46(36,37)40-7-11-15(43-45(33,34)35)14(30)20(42-11)28-10-27-13-17(22)25-9-26-18(13)28/h9-11,14-16,20,30-31,48H,3-8H2,1-2H3,(H,23,29)(H,24,32)(H,36,37)(H,38,39)(H2,22,25,26)(H2,33,34,35)/p-4/t11-,14-,15-,16+,20-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_PPI_c" id="M_PPI_c" name="diphosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="HO7P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 174.9529</p>
            <p>smiles: OP([O-])(=O)OP([O-])([O-])=O</p>
            <p>inchikey: XPPKVPWEQAFLFU-UHFFFAOYSA-K</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_PPI_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/H4O7P2/c1-8(2,3)7-9(4,5)6/h(H2,1,2,3)(H2,4,5,6)/p-3"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_PROTON_c" id="M_PROTON_c" name="H+" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1.00739</p>
            <p>smiles: [H+]</p>
            <p>inchikey: GPRLSGONYQIRFK-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_PROTON_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/p+1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__10269_c" id="M_CPD__45__10269_c" name="palmitoleoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H60N7O17P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 999.897</p>
            <p>smiles: CCCCCC\C=C/CCCCCCCC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: QBYOCCWNZAOZTL-MDMKAECGSA-J</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__10269_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C37H64N7O17P3S/c1-4-5-6-7-8-9-10-11-12-13-14-15-16-17-28(46)65-21-20-39-27(45)18-19-40-35(49)32(48)37(2,3)23-58-64(55,56)61-63(53,54)57-22-26-31(60-62(50,51)52)30(47)36(59-26)44-25-43-29-33(38)41-24-42-34(29)44/h9-10,24-26,30-32,36,47-48H,4-8,11-23H2,1-3H3,(H,39,45)(H,40,49)(H,53,54)(H,55,56)(H2,38,41,42)(H2,50,51,52)/p-4/b10-9-/t26-,30-,31-,32+,36-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_PALMITYL__45__COA_c" id="M_PALMITYL__45__COA_c" name="palmitoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H62N7O17P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1001.913</p>
            <p>smiles: CCCCCCCCCCCCCCCC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: MNBKLUUYKPBKDU-BBECNAHFSA-J</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_PALMITYL__45__COA_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C37H66N7O17P3S/c1-4-5-6-7-8-9-10-11-12-13-14-15-16-17-28(46)65-21-20-39-27(45)18-19-40-35(49)32(48)37(2,3)23-58-64(55,56)61-63(53,54)57-22-26-31(60-62(50,51)52)30(47)36(59-26)44-25-43-29-33(38)41-24-42-34(29)44/h24-26,30-32,36,47-48H,4-23H2,1-3H3,(H,39,45)(H,40,49)(H,53,54)(H,55,56)(H2,38,41,42)(H2,50,51,52)/p-4/t26-,30-,31-,32+,36-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_FERROCYTOCHROME__45__B5_c" id="M_FERROCYTOCHROME__45__B5_c" name="a ferrocytochrome b5" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_FERRICYTOCHROME__45__B5_c" id="M_FERRICYTOCHROME__45__B5_c" name="a ferricytochrome b5" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_L__45__ORNITHINE_c" id="M_L__45__ORNITHINE_c" name="L-ornithine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H13N2O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 133.1684</p>
            <p>smiles: [NH3+]CCC[C@H]([NH3+])C([O-])=O</p>
            <p>inchikey: AHLPHDHHMVZTML-BYPYZUCNSA-O</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_L__45__ORNITHINE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C5H12N2O2/c6-3-1-2-4(7)5(8)9/h4H,1-3,6-7H2,(H,8,9)/p+1/t4-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_6__45__Dimethylallyladenosine37__45__tRNAs_c" id="M_6__45__Dimethylallyladenosine37__45__tRNAs_c" name="N6-dimethylallyladenosine37 in tRNA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H19N5O10P2R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CC(C)=CCNc1ncnc2n(cnc12)[C@@H]1O[C@H](COP([O-])(=O)O*)[C@@H](OP([O-])(=O)O*)[C@H]1O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_CPD__45__4211_c" id="M_CPD__45__4211_c" name="dimethylallyl diphosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C5H9O7P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 243.0699</p>
            <p>smiles: CC(C)=CCOP([O-])(=O)OP([O-])([O-])=O</p>
            <p>inchikey: CBIDRCWHNCKSTO-UHFFFAOYSA-K</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__4211_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C5H12O7P2/c1-5(2)3-4-11-14(9,10)12-13(6,7)8/h3H,4H2,1-2H3,(H,9,10)(H2,6,7,8)/p-3"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_OXYGEN__45__MOLECULE_c" id="M_OXYGEN__45__MOLECULE_c" name="oxygen" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 31.9988</p>
            <p>smiles: O=O</p>
            <p>inchikey: MYMOFIZGZYHOMD-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_OXYGEN__45__MOLECULE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/O2/c1-2"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_tRNA__45__Adenosines__45__37_c" id="M_tRNA__45__Adenosines__45__37_c" name="an adenosine37 in tRNA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H11N5O10P2R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: Nc1ncnc2n(cnc12)[C@@H]1O[C@H](COP([O-])(=O)O*)[C@@H](OP([O-])(=O)O*)[C@H]1O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_Sulfurated__45__Sulfur__45__Acceptors_c" id="M_Sulfurated__45__Sulfur__45__Acceptors_c" name="a sulfurated [sulfur carrier]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="SR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Unsulfurated__45__Sulfur__45__Acceptors_c" id="M_Unsulfurated__45__Sulfur__45__Acceptors_c" name="an unsulfurated [sulfur carrier]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_PUTRESCINE_c" id="M_PUTRESCINE_c" name="putrescine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C4H14N2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 90.1663</p>
            <p>smiles: [NH3+]CCCC[NH3+]</p>
            <p>inchikey: KIDHWZJUCRJVML-UHFFFAOYSA-P</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_PUTRESCINE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C4H12N2/c5-3-1-2-4-6/h1-6H2/p+2"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_HSCN_c" id="M_HSCN_c" name="thiocyanate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CNS">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 58.083</p>
            <p>smiles: [S-]C#N</p>
            <p>inchikey: ZMZDMBWJUHKJPS-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_HSCN_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/CHNS/c2-1-3/h3H/p-1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CARBON__45__DIOXIDE_c" id="M_CARBON__45__DIOXIDE_c" name="CO2" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CO2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 44.0095</p>
            <p>smiles: O=C=O</p>
            <p>inchikey: CURLTUGMZLYLDI-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CARBON__45__DIOXIDE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/CO2/c2-1-3"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__11518_c" id="M_CPD__45__11518_c" name="3-oxo-2-(cis-2&apos;-pentenyl)-cyclopentane-1-octa-2-enoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H58N7O18P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1037.902</p>
            <p>smiles: [H]\C(CC)=C(/[H])CC1([H])C(=O)CCC1([H])CCCCC\C([H])=C(/[H])C(=O)SCC[NH+]=C([O-])CC[NH+]=C([O-])[C@]([H])(O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@@]1([H])O[C@@]([H])(n2cnc3c(N)ncnc23)[C@]([H])(O)[C@]1([H])OP([O-])([O-])=O</p>
            <p>inchikey: WDBPMRZYBZCIQE-WCBSGRPJSA-J</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__11518_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C39H62N7O18P3S/c1-4-5-9-13-26-25(15-16-27(26)47)12-10-7-6-8-11-14-30(49)68-20-19-41-29(48)17-18-42-37(52)34(51)39(2,3)22-61-67(58,59)64-66(56,57)60-21-28-33(63-65(53,54)55)32(50)38(62-28)46-24-45-31-35(40)43-23-44-36(31)46/h5,9,11,14,23-26,28,32-34,38,50-51H,4,6-8,10,12-13,15-22H2,1-3H3,(H,41,48)(H,42,52)(H,56,57)(H,58,59)(H2,40,43,44)(H2,53,54,55)/p-4/b9-5-,14-11+/t25?,26?,28-,32-,33-,34+,38-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_HYDROGEN__45__PEROXIDE_c" id="M_HYDROGEN__45__PEROXIDE_c" name="hydrogen peroxide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 34.0147</p>
            <p>smiles: [H]OO[H]</p>
            <p>inchikey: MHAJPDPJQMAIIY-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_HYDROGEN__45__PEROXIDE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/H2O2/c1-2/h1-2H"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__11517_c" id="M_CPD__45__11517_c" name="3-oxo-2-(cis-2&apos;-pentenyl)-cyclopentane-1-octanoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H60N7O18P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1039.918</p>
            <p>smiles: CC\C=C/CC1C(CCCCCCCC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2OP([O-])([O-])=O)n2cnc3c(N)ncnc23)CCC1=O</p>
            <p>inchikey: JZIQDJLBFKTBAK-HUKDABTFSA-J</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__11517_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C39H64N7O18P3S/c1-4-5-9-13-26-25(15-16-27(26)47)12-10-7-6-8-11-14-30(49)68-20-19-41-29(48)17-18-42-37(52)34(51)39(2,3)22-61-67(58,59)64-66(56,57)60-21-28-33(63-65(53,54)55)32(50)38(62-28)46-24-45-31-35(40)43-23-44-36(31)46/h5,9,23-26,28,32-34,38,50-51H,4,6-8,10-22H2,1-3H3,(H,41,48)(H,42,52)(H,56,57)(H,58,59)(H2,40,43,44)(H2,53,54,55)/p-4/b9-5-/t25?,26?,28-,32-,33-,34+,38-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_HCN_c" id="M_HCN_c" name="hydrogen cyanide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CHN">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 27.0253</p>
            <p>smiles: C#N</p>
            <p>inchikey: LELOWRISYMNNSU-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_HCN_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/CHN/c1-2/h1H"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_L__45__GLUTAMATE_GAMMA__45__SEMIALDEHYDE_c" id="M_L__45__GLUTAMATE_GAMMA__45__SEMIALDEHYDE_c" name="L-glutamate-5-semialdehyde" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 131.1299</p>
            <p>smiles: [H]C(=O)CC[C@H]([NH3+])C([O-])=O</p>
            <p>inchikey: KABXUUFDPUOJMW-BYPYZUCNSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_L__45__GLUTAMATE_GAMMA__45__SEMIALDEHYDE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C5H9NO3/c6-4(5(8)9)2-1-3-7/h3-4H,1-2,6H2,(H,8,9)/t4-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_2__45__Oxo__45__carboxylates_c" id="M_2__45__Oxo__45__carboxylates_c" name="a 2-oxo carboxylate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2O3R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [O-]C(=O)C([*])=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_Amino__45__Acids__45__20_c" id="M_Amino__45__Acids__45__20_c" name="a standard &amp;alpha; amino acid" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_IMP_c" id="M_IMP_c" name="IMP" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H11N4O8P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 346.1912</p>
            <p>smiles: O[C@@H]1[C@@H](COP([O-])([O-])=O)O[C@H]([C@@H]1O)n1cnc2c1nc[nH]c2=O</p>
            <p>inchikey: GRSZFWQUAKGDAV-KQYNXXCUSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_IMP_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C10H13N4O8P/c15-6-4(1-21-23(18,19)20)22-10(7(6)16)14-3-13-5-8(14)11-2-12-9(5)17/h2-4,6-7,10,15-16H,1H2,(H,11,12,17)(H2,18,19,20)/p-2/t4-,6-,7-,10-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__11519_c" id="M_CPD__45__11519_c" name="OPC8-3-hydroxyacyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H60N7O19P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1055.918</p>
            <p>smiles: [H]\C(CC)=C(/[H])CC1([H])C(=O)CCC1([H])CCCCCC([H])(O)CC(=O)SCC[NH+]=C([O-])CC[NH+]=C([O-])[C@]([H])(O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@@]1([H])O[C@@]([H])(n2cnc3c(N)ncnc23)[C@]([H])(O)[C@]1([H])OP([O-])([O-])=O</p>
            <p>inchikey: PDDHCVXPABQISO-MFYIAUATSA-J</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__11519_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_P__45__HYDROXY__45__PHENYLPYRUVATE_c" id="M_P__45__HYDROXY__45__PHENYLPYRUVATE_c" name="4-hydroxyphenylpyruvate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H7O4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 179.15</p>
            <p>smiles: Oc1ccc(CC(=O)C([O-])=O)cc1</p>
            <p>inchikey: KKADPXVIOXHVKN-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_P__45__HYDROXY__45__PHENYLPYRUVATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C9H8O4/c10-7-3-1-6(2-4-7)5-8(11)9(12)13/h1-4,10H,5H2,(H,12,13)/p-1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_ITP_c" id="M_ITP_c" name="ITP" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H11N4O14P3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 504.1362</p>
            <p>smiles: O[C@@H]1[C@@H](COP([O-])(=O)OP([O-])(=O)OP([O-])([O-])=O)O[C@H]([C@@H]1O)n1cnc2c1nc[nH]c2=O</p>
            <p>inchikey: HAEJPQIATWHALX-KQYNXXCUSA-J</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_ITP_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C10H15N4O14P3/c15-6-4(1-25-30(21,22)28-31(23,24)27-29(18,19)20)26-10(7(6)16)14-3-13-5-8(14)11-2-12-9(5)17/h2-4,6-7,10,15-16H,1H2,(H,21,22)(H,23,24)(H,11,12,17)(H2,18,19,20)/p-4/t4-,6-,7-,10-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
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        </annotation>
      </species>
      <species metaid="M_TYR_c" id="M_TYR_c" name="L-tyrosine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NO3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 181.1885</p>
            <p>smiles: [NH3+][C@@H](Cc1ccc(O)cc1)C([O-])=O</p>
            <p>inchikey: OUYCCCASQSFEME-QMMMGPOBSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_TYR_c">
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                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C9H11NO3/c10-8(9(12)13)5-6-1-3-7(11)4-2-6/h1-4,8,11H,5,10H2,(H,12,13)/t8-/m0/s1"/>
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        </annotation>
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      <species metaid="M_CPD0__45__2354_c" id="M_CPD0__45__2354_c" name="a tRNA precursor with a 5&apos; extension" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_NADH_c" id="M_NADH_c" name="NADH" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H27N7O14P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 663.4262</p>
            <p>smiles: NC(=O)C1=CN(C=CC1)[C@@H]1O[C@H](COP([O-])(=O)OP([O-])(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)n2cnc3c(N)ncnc23)[C@@H](O)[C@H]1O</p>
            <p>inchikey: BOPGDPNILDQYTO-NNYOXOHSSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_NADH_c">
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
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      </species>
      <species metaid="M_AMMONIUM_c" id="M_AMMONIUM_c" name="ammonium" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H4N">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 18.0379</p>
            <p>smiles: [H][N+]([H])([H])[H]</p>
            <p>inchikey: QGZKDVFQNNGYKY-UHFFFAOYSA-O</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_AMMONIUM_c">
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                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/H3N/h1H3/p+1"/>
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              </bqbiol:isVersionOf>
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        </annotation>
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      <species metaid="M_tRNAs_c" id="M_tRNAs_c" name="an uncharged tRNA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_tRNA__45__fragment_c" id="M_tRNA__45__fragment_c" name="a tRNA fragment" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__11520_c" id="M_CPD__45__11520_c" name="OPC8-3-ketoacyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H58N7O19P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1053.902</p>
            <p>smiles: [H]\C(CC)=C(/[H])CC1([H])C(=O)CCC1([H])CCCCCC(=O)CC(=O)SCC[NH+]=C([O-])CC[NH+]=C([O-])[C@]([H])(O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@@]1([H])O[C@@]([H])(n2cnc3c(N)ncnc23)[C@]([H])(O)[C@]1([H])OP([O-])([O-])=O</p>
            <p>inchikey: YYCCMACTOAJGGW-LHVXMLCWSA-J</p>
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        </notes>
        <annotation>
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              <bqbiol:isVersionOf>
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                </rdf:Bag>
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          </rdf:RDF>
        </annotation>
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      <species metaid="M_PRO_c" id="M_PRO_c" name="L-proline" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 115.1305</p>
            <p>smiles: [O-]C(=O)[C@@H]1CCC[NH2+]1</p>
            <p>inchikey: ONIBWKKTOPOVIA-BYPYZUCNSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_PRO_c">
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                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C5H9NO2/c7-5(8)4-2-1-3-6-4/h4,6H,1-3H2,(H,7,8)/t4-/m0/s1"/>
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      <species metaid="M_OROTATE_c" id="M_OROTATE_c" name="orotate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H3N2O4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 155.0889</p>
            <p>smiles: [O-]C(=O)c1cc(=O)[nH]c(=O)[nH]1</p>
            <p>inchikey: PXQPEWDEAKTCGB-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_OROTATE_c">
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                <rdf:Bag>
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      <species metaid="M_GLT_c" id="M_GLT_c" name="L-glutamate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H8NO4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 146.1219</p>
            <p>smiles: [NH3+][C@@H](CCC([O-])=O)C([O-])=O</p>
            <p>inchikey: WHUUTDBJXJRKMK-VKHMYHEASA-M</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_GLT_c">
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                <rdf:Bag>
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      <species metaid="M_NADPH_c" id="M_NADPH_c" name="NADPH" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C21H26N7O17P3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 741.3913</p>
            <p>smiles: NC(=O)C1=CN(C=CC1)[C@@H]1O[C@H](COP([O-])(=O)OP([O-])(=O)OC[C@H]2O[C@H]([C@H](OP([O-])([O-])=O)[C@@H]2O)n2cnc3c(N)ncnc23)[C@@H](O)[C@H]1O</p>
            <p>inchikey: ACFIXJIJDZMPPO-NNYOXOHSSA-J</p>
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        </notes>
        <annotation>
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      <species metaid="M_CPD__45__712_c" id="M_CPD__45__712_c" name="6-deoxocathasterone" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H50O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 418.6954</p>
            <p>smiles: [H][C@@]1(CC[C@@]2([H])[C@]3([H])CC[C@@]4([H])C[C@@H](O)CC[C@]4(C)[C@@]3([H])CC[C@]12C)[C@H](C)[C@@H](O)C[C@@H](C)C(C)C</p>
            <p>inchikey: ZHZKWZJLUNXOSN-YUZBOUAZSA-N</p>
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            <rdf:Description rdf:about="#M_CPD__45__712_c">
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                </rdf:Bag>
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      <species metaid="M_NADP_c" id="M_NADP_c" name="NADP+" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C21H25N7O17P3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 740.3828</p>
            <p>smiles: NC(=O)c1ccc[n+](c1)[C@@H]1O[C@H](COP([O-])(=O)OP([O-])(=O)OC[C@H]2O[C@H]([C@H](OP([O-])([O-])=O)[C@@H]2O)n2cnc3c(N)ncnc23)[C@@H](O)[C@H]1O</p>
            <p>inchikey: XJLXINKUBYWONI-NNYOXOHSSA-K</p>
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        </notes>
        <annotation>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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        </annotation>
      </species>
      <species metaid="M_LL__45__DIAMINOPIMELATE_c" id="M_LL__45__DIAMINOPIMELATE_c" name="L,L-diaminopimelate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H14N2O4">
        <notes>
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            <p>mass: 190.1971</p>
            <p>smiles: [NH3+][C@@H](CCC[C@H]([NH3+])C([O-])=O)C([O-])=O</p>
            <p>inchikey: GMKMEZVLHJARHF-WHFBIAKZSA-N</p>
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        </notes>
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            <rdf:Description rdf:about="#M_LL__45__DIAMINOPIMELATE_c">
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                </rdf:Bag>
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        </annotation>
      </species>
      <species metaid="M_DELTA1__45__PIPERIDEINE__45__2__45__6__45__DICARBOXYLATE_c" id="M_DELTA1__45__PIPERIDEINE__45__2__45__6__45__DICARBOXYLATE_c" name="(S)-2,3,4,5-tetrahydrodipicolinate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C7H7NO4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 169.1359</p>
            <p>smiles: [O-]C(=O)[C@@H]1CCCC(=N1)C([O-])=O</p>
            <p>inchikey: CXMBCXQHOXUCEO-BYPYZUCNSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_DELTA1__45__PIPERIDEINE__45__2__45__6__45__DICARBOXYLATE_c">
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_2__45__KETOGLUTARATE_c" id="M_2__45__KETOGLUTARATE_c" name="2-oxoglutarate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H4O5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 144.0834</p>
            <p>smiles: [O-]C(=O)CCC(=O)C([O-])=O</p>
            <p>inchikey: KPGXRSRHYNQIFN-UHFFFAOYSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_2__45__KETOGLUTARATE_c">
              <bqbiol:isVersionOf>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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        </annotation>
      </species>
      <species metaid="M_CPD__45__7063_c" id="M_CPD__45__7063_c" name="red chlorophyll catabolite" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C35H36N4O7">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 624.684</p>
            <p>smiles: [H]C(=O)c1[nH]c(Cc2[nH]c3\C([C-](C(=O)OC)C(=O)c3c2C)=C2/N=C(/C=C3\NC(=O)C(C=C)=C3C)[C@@H](C)[C@@H]2CCC([O-])=O)c(CC)c1C</p>
            <p>inchikey: XUGDLVKQDJHHDW-CRRWILEESA-M</p>
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        </notes>
        <annotation>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Reduced__45__ferredoxins_c" id="M_Reduced__45__ferredoxins_c" name="a reduced ferredoxin [iron-sulfur] cluster" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Oxidized__45__ferredoxins_c" id="M_Oxidized__45__ferredoxins_c" name="an oxidized ferredoxin [iron-sulfur] cluster" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__7061_c" id="M_CPD__45__7061_c" name="pheophorbide a" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C35H34N4O5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 590.6694</p>
            <p>smiles: CCc1c(C)c2cc3[nH]c(cc4nc([C@@H](CCC([O-])=O)[C@@H]4C)c4[c-](C(=O)OC)c(=O)c5c(C)c(cc1n2)[nH]c45)c(C)c3C=C</p>
            <p>inchikey: UXWYEAZHZLZDGM-ZVEVZSNKSA-M</p>
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        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_CPD__45__7061_c">
              <bqbiol:isVersionOf>
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              </bqbiol:isVersionOf>
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        </annotation>
      </species>
      <species metaid="M_CPD__45__7064_c" id="M_CPD__45__7064_c" name="primary fluorescent chlorophyll catabolite" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C35H39N4O7">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 627.7073</p>
            <p>smiles: [H]C(=O)c1[nH]c(Cc2[nH]c3C(C4=NC(CC5NC(=O)C(C=C)=C5C)[C@@H](C)[C@@H]4CCC([O-])=O)=C(C(=O)OC)C(=O)c3c2C)c(CC)c1C</p>
            <p>inchikey: OSTPIPDPZXSGDG-FNCUHFQMSA-M</p>
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        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_CPD__45__7064_c">
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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        </annotation>
      </species>
      <species metaid="M_2__45__OXOBUTANOATE_c" id="M_2__45__OXOBUTANOATE_c" name="2-oxobutanoate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H5O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 101.0812</p>
            <p>smiles: CCC(=O)C([O-])=O</p>
            <p>inchikey: TYEYBOSBBBHJIV-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_2__45__OXOBUTANOATE_c">
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      <species metaid="M_ATP_c" id="M_ATP_c" name="ATP" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O13P3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 503.1515</p>
            <p>smiles: Nc1ncnc2n(cnc12)[C@@H]1O[C@H](COP([O-])(=O)OP([O-])(=O)OP([O-])([O-])=O)[C@@H](O)[C@H]1O</p>
            <p>inchikey: ZKHQWZAMYRWXGA-KQYNXXCUSA-J</p>
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        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_ATP_c">
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      <species metaid="M_THR_c" id="M_THR_c" name="L-threonine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 119.1192</p>
            <p>smiles: C[C@@H](O)[C@H]([NH3+])C([O-])=O</p>
            <p>inchikey: AYFVYJQAPQTCCC-GBXIJSLDSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_THR_c">
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      <species metaid="M_AMP_c" id="M_AMP_c" name="AMP" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O7P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 345.2064</p>
            <p>smiles: Nc1ncnc2n(cnc12)[C@@H]1O[C@H](COP([O-])([O-])=O)[C@@H](O)[C@H]1O</p>
            <p>inchikey: UDMBCSSLTHHNCD-KQYNXXCUSA-L</p>
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        </notes>
        <annotation>
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      <species metaid="M_THR__45__tRNAs_c" id="M_THR__45__tRNAs_c" name="a tRNAthr" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Charged__45__THR__45__tRNAs_c" id="M_Charged__45__THR__45__tRNAs_c" name="an L-threonyl-[tRNAthr]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      <species metaid="M_GLY_c" id="M_GLY_c" name="glycine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H5NO2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 75.0666</p>
            <p>smiles: [NH3+]CC([O-])=O</p>
            <p>inchikey: DHMQDGOQFOQNFH-UHFFFAOYSA-N</p>
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        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_GLY_c">
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                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C2H5NO2/c3-1-2(4)5/h1,3H2,(H,4,5)"/>
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      <species metaid="M_ACETALD_c" id="M_ACETALD_c" name="acetaldehyde" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H4O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 44.0526</p>
            <p>smiles: [H]C(C)=O</p>
            <p>inchikey: IKHGUXGNUITLKF-UHFFFAOYSA-N</p>
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        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_ACETALD_c">
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                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C2H4O/c1-2-3/h2H,1H3"/>
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      <species metaid="M_O__45__PHOSPHO__45__L__45__HOMOSERINE_c" id="M_O__45__PHOSPHO__45__L__45__HOMOSERINE_c" name="O-phospho-L-homoserine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H8NO6P">
        <notes>
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            <p>mass: 197.0843</p>
            <p>smiles: [NH3+][C@@H](CCOP([O-])([O-])=O)C([O-])=O</p>
            <p>inchikey: FXDNYOANAXWZHG-VKHMYHEASA-L</p>
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        <annotation>
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            <rdf:Description rdf:about="#M_O__45__PHOSPHO__45__L__45__HOMOSERINE_c">
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      </species>
      <species metaid="M_CPD__45__17387_c" id="M_CPD__45__17387_c" name="(3S)-hydroxy-(6Z,9Z,12Z,15Z,18Z,21Z)-tetracosahexaenoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H66N7O18P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1118.03</p>
            <p>smiles: CC\C=C/C\C=C/C\C=C/C\C=C/C\C=C/C\C=C/CC[C@H](O)CC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: JJCGUWRDULVWQG-DRXNPIJBSA-J</p>
          </body>
        </notes>
        <annotation>
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      <species metaid="M_CPD__45__17388_c" id="M_CPD__45__17388_c" name="3-oxo-(6Z,9Z,12Z,15Z,18Z,21Z)-tetracosahexaenoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H64N7O18P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1116.014</p>
            <p>smiles: CC\C=C/C\C=C/C\C=C/C\C=C/C\C=C/C\C=C/CCC(=O)CC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: DNHDPAXPQGYGIJ-KWFBMMABSA-J</p>
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        </notes>
        <annotation>
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        </annotation>
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      <species metaid="M_ACETYL__45__COA_c" id="M_ACETYL__45__COA_c" name="acetyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C23H34N7O17P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 805.541</p>
            <p>smiles: CC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: ZSLZBFCDCINBPY-ZSJPKINUSA-J</p>
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        </notes>
        <annotation>
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      <species metaid="M_CPD__45__17312_c" id="M_CPD__45__17312_c" name="docosahexaenoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H62N7O17P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1073.978</p>
            <p>smiles: CC\C=C/C\C=C/C\C=C/C\C=C/C\C=C/C\C=C/CCC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: MENFZXMQSYYVRK-CRCGJGBYSA-J</p>
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        </notes>
        <annotation>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [O-]C([*])=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_CPD__45__17355_c" id="M_CPD__45__17355_c" name="a [glycerolipid]-docosahexaenoate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C22H31OR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CC\C=C/C\C=C/C\C=C/C\C=C/C\C=C/C\C=C/CCC(*)=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_Glycerolipids_c" id="M_Glycerolipids_c" name="a glycerolipid" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__17282_c" id="M_CPD__45__17282_c" name="a [glycerolipid]-icosapentaenoate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H29OR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CC\C=C/C\C=C/C\C=C/C\C=C/C\C=C/CCCC(*)=O</p>
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        </notes>
      </species>
      <species metaid="M_5Z8Z11Z14Z17Z__45__EICOSAPENTAENOATE_c" id="M_5Z8Z11Z14Z17Z__45__EICOSAPENTAENOATE_c" name="icosapentaenoate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H29O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 301.4436</p>
            <p>smiles: CC\C=C/C\C=C/C\C=C/C\C=C/C\C=C/CCCC([O-])=O</p>
            <p>inchikey: JAZBEHYOTPTENJ-JLNKQSITSA-M</p>
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        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_5Z8Z11Z14Z17Z__45__EICOSAPENTAENOATE_c">
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      <species metaid="M_CPD__45__15365_c" id="M_CPD__45__15365_c" name="densipoloyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H62N7O18P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1041.934</p>
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            <p>inchikey: QEBZGOIPMJEISG-APEVUUACSA-J</p>
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        </notes>
        <annotation>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CC\C=C/CC[C@@H](O)C\C=C/CCCCCCCC(*)=O</p>
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        </notes>
      </species>
      <species metaid="M_CPD__45__17396_c" id="M_CPD__45__17396_c" name="a [glycerolipid]-ricinoleate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H33O2R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CCCCCC[C@@H](O)C\C=C/CCCCCCCC(*)=O</p>
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        </notes>
      </species>
      <species metaid="M_CPD__45__15364_c" id="M_CPD__45__15364_c" name="ricinoleoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O18P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1043.95</p>
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            <p>inchikey: BHVZCCKRRPYXCV-MGNVXPIMSA-J</p>
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        </notes>
        <annotation>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1072.003</p>
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            <p>inchikey: JJYIVZKVZZSDMC-GXVFDTDKSA-J</p>
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      <species metaid="M_DATP_c" id="M_DATP_c" name="dATP" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O12P3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 487.1521</p>
            <p>smiles: Nc1ncnc2n(cnc12)[C@H]1C[C@H](O)[C@@H](COP([O-])(=O)OP([O-])(=O)OP([O-])([O-])=O)O1</p>
            <p>inchikey: SUYVUBYJARFZHO-RRKCRQDMSA-J</p>
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            <rdf:Description rdf:about="#M_DATP_c">
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                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C10H16N5O12P3/c11-9-8-10(13-3-12-9)15(4-14-8)7-1-5(16)6(25-7)2-24-29(20,21)27-30(22,23)26-28(17,18)19/h3-7,16H,1-2H2,(H,20,21)(H,22,23)(H2,11,12,13)(H2,17,18,19)/p-4/t5-,6+,7+/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_DADP_c" id="M_DADP_c" name="dADP" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O9P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 408.1795</p>
            <p>smiles: Nc1ncnc2n(cnc12)[C@H]1C[C@H](O)[C@@H](COP([O-])(=O)OP([O-])([O-])=O)O1</p>
            <p>inchikey: DAEAPNUQQAICNR-RRKCRQDMSA-K</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_DADP_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C10H15N5O9P2/c11-9-8-10(13-3-12-9)15(4-14-8)7-1-5(16)6(23-7)2-22-26(20,21)24-25(17,18)19/h3-7,16H,1-2H2,(H,20,21)(H2,11,12,13)(H2,17,18,19)/p-3/t5-,6+,7+/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_ADP_c" id="M_ADP_c" name="ADP" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O10P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 424.1789</p>
            <p>smiles: Nc1ncnc2n(cnc12)[C@@H]1O[C@H](COP([O-])(=O)OP([O-])([O-])=O)[C@@H](O)[C@H]1O</p>
            <p>inchikey: XTWYTFMLZFPYCI-KQYNXXCUSA-K</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_ADP_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C10H15N5O10P2/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(24-10)1-23-27(21,22)25-26(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H2,11,12,13)(H2,18,19,20)/p-3/t4-,6-,7-,10-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_3__45__DEOXY__45__D__45__ARABINO__45__HEPTULOSONATE__45__7__45__P_c" id="M_3__45__DEOXY__45__D__45__ARABINO__45__HEPTULOSONATE__45__7__45__P_c" name="3-deoxy-D-arabino-heptulosonate 7-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C7H10O10P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 285.1237</p>
            <p>smiles: O[C@H](COP([O-])([O-])=O)[C@@H](O)[C@H](O)CC(=O)C([O-])=O</p>
            <p>inchikey: PJWIPEXIFFQAQZ-PUFIMZNGSA-K</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_3__45__DEOXY__45__D__45__ARABINO__45__HEPTULOSONATE__45__7__45__P_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C7H13O10P/c8-3(1-4(9)7(12)13)6(11)5(10)2-17-18(14,15)16/h3,5-6,8,10-11H,1-2H2,(H,12,13)(H2,14,15,16)/p-3/t3-,5-,6+/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Glucopyranose_c" id="M_Glucopyranose_c" name="D-glucopyranose" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__1103_c" id="M_CPD__45__1103_c" name="taxiphyllin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H17NO7">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 311.2873</p>
            <p>smiles: OC[C@H]1O[C@@H](O[C@@H](C#N)c2ccc(O)cc2)[C@H](O)[C@@H](O)[C@@H]1O</p>
            <p>inchikey: NVLTYOJHPBMILU-GMDXDWKASA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__1103_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C14H17NO7/c15-5-9(7-1-3-8(17)4-2-7)21-14-13(20)12(19)11(18)10(6-16)22-14/h1-4,9-14,16-20H,6H2/t9-,10+,11+,12-,13+,14+/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_H2CO3_c" id="M_H2CO3_c" name="carbonic acid" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH2O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Carboxylic__45__esters_c" id="M_Carboxylic__45__esters_c" name="a carboxylic ester" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CO2R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [*]C(=O)O[*]</p>
          </body>
        </notes>
      </species>
      <species metaid="M_Alcohols_c" id="M_Alcohols_c" name="an alcohol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="HOR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: O[*]</p>
          </body>
        </notes>
      </species>
      <species metaid="M_Carboxylates_c" id="M_Carboxylates_c" name="a carboxylate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CO2R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [O-]C([*])=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_Peptides__45__holder_c" id="M_Peptides__45__holder_c" name="a peptide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_L__45__Amino__45__Acids_c" id="M_L__45__Amino__45__Acids_c" name="an L-amino acid" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H4NO2R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [NH3+][C@@H]([*])C([O-])=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_HCO3_c" id="M_HCO3_c" name="hydrogen carbonate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CHO3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 61.0174</p>
            <p>smiles: OC([O-])=O</p>
            <p>inchikey: BVKZGUZCCUSVTD-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_HCO3_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/CH2O3/c2-1(3)4/h(H2,2,3,4)/p-1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_GLN_c" id="M_GLN_c" name="L-glutamine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10N2O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 146.1445</p>
            <p>smiles: NC(=O)CC[C@H]([NH3+])C([O-])=O</p>
            <p>inchikey: ZDXPYRJPNDTMRX-VKHMYHEASA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_GLN_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C5H10N2O3/c6-3(5(9)10)1-2-4(7)8/h3H,1-2,6H2,(H2,7,8)(H,9,10)/t3-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__14704_c" id="M_CPD__45__14704_c" name="4-hydroxy-2-nonenal-glutathione conjugate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H32N3O8S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 462.537</p>
          </body>
        </notes>
      </species>
      <species metaid="M_GLUTATHIONE_c" id="M_GLUTATHIONE_c" name="glutathione" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H16N3O6S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 306.316</p>
            <p>smiles: [NH3+][C@@H](CCC(=O)N[C@@H](CS)C(=O)NCC([O-])=O)C([O-])=O</p>
            <p>inchikey: RWSXRVCMGQZWBV-WDSKDSINSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_GLUTATHIONE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C10H17N3O6S/c11-5(10(18)19)1-2-7(14)13-6(4-20)9(17)12-3-8(15)16/h5-6,20H,1-4,11H2,(H,12,17)(H,13,14)(H,15,16)(H,18,19)/p-1/t5-,6-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_L__45__HISTIDINOL__45__P_c" id="M_L__45__HISTIDINOL__45__P_c" name="L-histidinol-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11N3O4P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 220.1436</p>
            <p>smiles: [NH3+][C@H](COP([O-])([O-])=O)Cc1c[nH]cn1</p>
            <p>inchikey: CWNDERHTHMWBSI-YFKPBYRVSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_L__45__HISTIDINOL__45__P_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C6H12N3O4P/c7-5(3-13-14(10,11)12)1-6-2-8-4-9-6/h2,4-5H,1,3,7H2,(H,8,9)(H2,10,11,12)/p-1/t5-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_HISTIDINAL_c" id="M_HISTIDINAL_c" name="histidinal" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H10N3O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 140.1626</p>
            <p>smiles: [H]C(=O)[C@@H]([NH3+])Cc1c[nH]cn1</p>
            <p>inchikey: VYOIELONWKIZJS-YFKPBYRVSA-O</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_HISTIDINAL_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C6H9N3O/c7-5(3-10)1-6-2-8-4-9-6/h2-5H,1,7H2,(H,8,9)/p+1/t5-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Protein__45__D__45__serines_c" id="M_Protein__45__D__45__serines_c" name="a [protein]-D-serine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H6N2O3R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_HISTIDINOL_c" id="M_HISTIDINOL_c" name="histidinol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H12N3O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 142.1784</p>
            <p>smiles: [NH3+][C@H](CO)Cc1c[nH]cn1</p>
            <p>inchikey: ZQISRDCJNBUVMM-YFKPBYRVSA-O</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_HISTIDINOL_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C6H11N3O/c7-5(3-10)1-6-2-8-4-9-6/h2,4-5,10H,1,3,7H2,(H,8,9)/p+1/t5-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Protein__45__L__45__serines_c" id="M_Protein__45__L__45__serines_c" name="a [protein]-L-serine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H6N2O3R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: OC[C@H](NC([*])=O)C(=O)N[*]</p>
          </body>
        </notes>
      </species>
      <species metaid="M_CPD__45__14706_c" id="M_CPD__45__14706_c" name="4-hydroxy-2-nonenal-[L-Cys] conjugate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H23NO4S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 277.378</p>
          </body>
        </notes>
      </species>
      <species metaid="M_Trans__45__D2__45__decenoyl__45__ACPs_c" id="M_Trans__45__D2__45__decenoyl__45__ACPs_c" name="a (2E)-dec-2-enoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H17OSR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Cis__45__delta__45__3__45__decenoyl__45__ACPs_c" id="M_Cis__45__delta__45__3__45__decenoyl__45__ACPs_c" name="a (3Z)-dec-3-enoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__14705_c" id="M_CPD__45__14705_c" name="4-hydroxy-2-nonenal-[Cys-Gly] conjugate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H26N2O5S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 334.43</p>
          </body>
        </notes>
      </species>
      <species metaid="M_3__45__Oxo__45__5__45__Alpha__45__Steroids_c" id="M_3__45__Oxo__45__5__45__Alpha__45__Steroids_c" name="a 3-oxo-5-&amp;alpha;-steroid" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Proteins__45__with__45__incorrect__45__disulfides_c" id="M_Proteins__45__with__45__incorrect__45__disulfides_c" name="a protein with incorrect disulfide bonds" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Donor__45__H2_c" id="M_Donor__45__H2_c" name="an reduced unknown electron acceptor" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Proteins__45__with__45__correct__45__disulfides_c" id="M_Proteins__45__with__45__correct__45__disulfides_c" name="a protein with correct disulfide bonds" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_3__45__Oxo__45__Delta__45__4__45__Steroids_c" id="M_3__45__Oxo__45__Delta__45__4__45__Steroids_c" name="a 3-oxo-&amp;Delta;4-steroid" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H28O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 272.425</p>
            <p>smiles: CC12CCCC1C1CCC3=CC(=O)CCC3(C)C1CC2</p>
            <p>inchikey: MSEZLHAVPJYYIQ-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_3__45__Oxo__45__Delta__45__4__45__Steroids_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C19H28O/c1-18-9-3-4-16(18)15-6-5-13-12-14(20)7-11-19(13,2)17(15)8-10-18/h12,15-17H,3-11H2,1-2H3"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Acceptor_c" id="M_Acceptor_c" name="an oxidized unknown electron acceptor" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Histone__45__Acetyl__45__Lysine_c" id="M_Histone__45__Acetyl__45__Lysine_c" name="a [histone]-N6-acetyl-L-lysine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H15N2O2R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CC(=O)NCCCC[C@H]([NH2+]*)C(*)=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_OXALACETIC_ACID_c" id="M_OXALACETIC_ACID_c" name="oxaloacetate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H2O5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 130.0568</p>
            <p>smiles: [O-]C(=O)CC(=O)C([O-])=O</p>
            <p>inchikey: KHPXUQMNIQBQEV-UHFFFAOYSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_OXALACETIC_ACID_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C4H4O5/c5-2(4(8)9)1-3(6)7/h1H2,(H,6,7)(H,8,9)/p-2"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Histone__45__L__45__lysine_c" id="M_Histone__45__L__45__lysine_c" name="a [histone]-L-lysine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C7H14N3O2R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [NH3+]CCCC[C@H](NC([*])=O)C(=O)N[*]</p>
          </body>
        </notes>
      </species>
      <species metaid="M_L__45__ASPARTATE_c" id="M_L__45__ASPARTATE_c" name="L-aspartate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H6NO4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 132.0953</p>
            <p>smiles: [NH3+][C@@H](CC([O-])=O)C([O-])=O</p>
            <p>inchikey: CKLJMWTZIZZHCS-REOHCLBHSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_L__45__ASPARTATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C4H7NO4/c5-2(4(8)9)1-3(6)7/h2H,1,5H2,(H,6,7)(H,8,9)/p-1/t2-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Relaxed__45__DNAs_c" id="M_Relaxed__45__DNAs_c" name="a relaxed DNA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Negatively__45__super__45__coiled__45__DNAs_c" id="M_Negatively__45__super__45__coiled__45__DNAs_c" name="a negatively supercoiled DNA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_ADENOSYL__45__HOMO__45__CYS_c" id="M_ADENOSYL__45__HOMO__45__CYS_c" name="S-adenosyl-L-homocysteine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H20N6O5S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 384.411</p>
            <p>smiles: Nc1ncnc2n(cnc12)[C@@H]1O[C@H](CSCC[C@H]([NH3+])C([O-])=O)[C@@H](O)[C@H]1O</p>
            <p>inchikey: ZJUKTBDSGOFHSH-WFMPWKQPSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_ADENOSYL__45__HOMO__45__CYS_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C14H20N6O5S/c15-6(14(23)24)1-2-26-3-7-9(21)10(22)13(25-7)20-5-19-8-11(16)17-4-18-12(8)20/h4-7,9-10,13,21-22H,1-3,15H2,(H,23,24)(H2,16,17,18)/t6-,7+,9+,10+,13+/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__8579_c" id="M_CPD__45__8579_c" name="a [histone] N6-methyl-L-lysine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C7H16N2OR2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: C[NH2+]CCCC[C@H]([NH2+]*)C(*)=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_L__45__ALPHA__45__ALANINE_c" id="M_L__45__ALPHA__45__ALANINE_c" name="L-alanine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 89.0932</p>
            <p>smiles: C[C@H]([NH3+])C([O-])=O</p>
            <p>inchikey: QNAYBMKLOCPYGJ-REOHCLBHSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_L__45__ALPHA__45__ALANINE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C3H7NO2/c1-2(4)3(5)6/h2H,4H2,1H3,(H,5,6)/t2-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Double__45__Stranded__45__DNAs_c" id="M_Double__45__Stranded__45__DNAs_c" name="a double stranded DNA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_S__45__ADENOSYLMETHIONINE_c" id="M_S__45__ADENOSYLMETHIONINE_c" name="S-adenosyl-L-methionine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C15H23N6O5S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 399.445</p>
            <p>smiles: C[S+](CC[C@H]([NH3+])C([O-])=O)C[C@H]1O[C@H]([C@H](O)[C@@H]1O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: MEFKEPWMEQBLKI-AIRLBKTGSA-O</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_S__45__ADENOSYLMETHIONINE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C15H22N6O5S/c1-27(3-2-7(16)15(24)25)4-8-10(22)11(23)14(26-8)21-6-20-9-12(17)18-5-19-13(9)21/h5-8,10-11,14,22-23H,2-4,16H2,1H3,(H2-,17,18,19,24,25)/p+1/t7-,8+,10+,11+,14+,27?/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_PYRUVATE_c" id="M_PYRUVATE_c" name="pyruvate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H3O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 87.0547</p>
            <p>smiles: CC(=O)C([O-])=O</p>
            <p>inchikey: LCTONWCANYUPML-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_PYRUVATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C3H4O3/c1-2(4)3(5)6/h1H3,(H,5,6)/p-1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_FORMATE_c" id="M_FORMATE_c" name="formate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CHO2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 45.018</p>
            <p>smiles: [H]C([O-])=O</p>
            <p>inchikey: BDAGIHXWWSANSR-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_FORMATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/CH2O2/c2-1-3/h1H,(H,2,3)/p-1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__8606_c" id="M_CPD__45__8606_c" name="24,25-dihydrolanosterol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H52O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 428.7333</p>
            <p>smiles: [H][C@@]1(CC[C@@]2(C)C3=C(CC[C@]12C)[C@@]1(C)CC[C@H](O)C(C)(C)[C@]1([H])CC3)[C@H](C)CCCC(C)C</p>
            <p>inchikey: MBZYKEVPFYHDOH-BQNIITSRSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__8606_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C30H52O/c1-20(2)10-9-11-21(3)22-14-18-30(8)24-12-13-25-27(4,5)26(31)16-17-28(25,6)23(24)15-19-29(22,30)7/h20-22,25-26,31H,9-19H2,1-8H3/t21-,22-,25+,26+,28-,29-,30+/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_2__45__KETO__45__ISOVALERATE_c" id="M_2__45__KETO__45__ISOVALERATE_c" name="3-methyl-2-oxobutanoate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H7O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 115.1078</p>
            <p>smiles: CC(C)C(=O)C([O-])=O</p>
            <p>inchikey: QHKABHOOEWYVLI-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_2__45__KETO__45__ISOVALERATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C5H8O3/c1-3(2)4(6)5(7)8/h3H,1-2H3,(H,7,8)/p-1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_3__45__CARBOXY__45__3__45__HYDROXY__45__ISOCAPROATE_c" id="M_3__45__CARBOXY__45__3__45__HYDROXY__45__ISOCAPROATE_c" name="(2S)-2-isopropylmalate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C7H10O5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 174.1524</p>
            <p>smiles: CC(C)[C@@](O)(CC([O-])=O)C([O-])=O</p>
            <p>inchikey: BITYXLXUCSKTJS-ZETCQYMHSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_3__45__CARBOXY__45__3__45__HYDROXY__45__ISOCAPROATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C7H12O5/c1-4(2)7(12,6(10)11)3-5(8)9/h4,12H,3H2,1-2H3,(H,8,9)(H,10,11)/p-2/t7-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_GLUTARYL__45__COA_c" id="M_GLUTARYL__45__COA_c" name="glutaryl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C26H37N7O19P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 876.597</p>
            <p>smiles: CC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12)[C@@H](O)C(=O)NCCC(=O)NCCSC(=O)CCCC([O-])=O</p>
            <p>inchikey: SYKWLIJQEHRDNH-CKRMAKSASA-I</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_GLUTARYL__45__COA_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_2K__45__ADIPATE_c" id="M_2K__45__ADIPATE_c" name="2-oxoadipate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H6O5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 158.1099</p>
            <p>smiles: [O-]C(=O)CCCC(=O)C([O-])=O</p>
            <p>inchikey: FGSBNBBHOZHUBO-UHFFFAOYSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_2K__45__ADIPATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C6H8O5/c7-4(6(10)11)2-1-3-5(8)9/h1-3H2,(H,8,9)(H,10,11)/p-2"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_DI__45__H__45__OROTATE_c" id="M_DI__45__H__45__OROTATE_c" name="(S)-dihydroorotate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H5N2O4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 157.1047</p>
            <p>smiles: [O-]C(=O)[C@@H]1CC(=O)NC(=O)N1</p>
            <p>inchikey: UFIVEPVSAGBUSI-REOHCLBHSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_DI__45__H__45__OROTATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C5H6N2O4/c8-3-1-2(4(9)10)6-5(11)7-3/h2H,1H2,(H,9,10)(H2,6,7,8,11)/p-1/t2-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
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      <species metaid="M_E__45___c" id="M_E__45___c" name="E-" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [*-]</p>
          </body>
        </notes>
      </species>
      <species metaid="M_Ubiquinols_c" id="M_Ubiquinols_c" name="an ubiquinol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Ubiquinones_c" id="M_Ubiquinones_c" name="a ubiquinone" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Menaquinones_c" id="M_Menaquinones_c" name="a menaquinone" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Menaquinols_c" id="M_Menaquinols_c" name="a menaquinol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD0__45__1422_c" id="M_CPD0__45__1422_c" name="dipalmitoyl phosphatidate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C35H67O8P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 646.8765</p>
            <p>smiles: CCCCCCCCCCCCCCCC(=O)OC[C@H](COP([O-])([O-])=O)OC(=O)CCCCCCCCCCCCCCC</p>
            <p>inchikey: PORPENFLTBBHSG-MGBGTMOVSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD0__45__1422_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Palmitoyl__45__ACPs_c" id="M_Palmitoyl__45__ACPs_c" name="a palmitoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H31OSR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CCCCCCCCCCCCCCCC(=O)S[*]</p>
          </body>
        </notes>
      </species>
      <species metaid="M_ACP_c" id="M_ACP_c" name="a holo-[acyl-carrier protein]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="HSR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: S[*]</p>
          </body>
        </notes>
      </species>
      <species metaid="M_1__45__PALMITOYLGLYCEROL__45__3__45__PHOSPHATE_c" id="M_1__45__PALMITOYLGLYCEROL__45__3__45__PHOSPHATE_c" name="1-palmitoylglycerol 3-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H37O7P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 408.4677</p>
            <p>smiles: CCCCCCCCCCCCCCCC(=O)OCC(O)COP([O-])([O-])=O</p>
            <p>inchikey: YNDYKPRNFWPPFU-UHFFFAOYSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_1__45__PALMITOYLGLYCEROL__45__3__45__PHOSPHATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C19H39O7P/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-19(21)25-16-18(20)17-26-27(22,23)24/h18,20H,2-17H2,1H3,(H2,22,23,24)/p-2"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_2__45__LYSOPHOSPHATIDYLETHANOLAMINES_c" id="M_2__45__LYSOPHOSPHATIDYLETHANOLAMINES_c" name="a 1-acyl 2-lyso-phosphatidylethanolamine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Fatty__45__Acids_c" id="M_Fatty__45__Acids_c" name="a fatty acid" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CO2R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [O-]C([*])=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_L__45__1__45__PHOSPHATIDYL__45__ETHANOLAMINE_c" id="M_L__45__1__45__PHOSPHATIDYL__45__ETHANOLAMINE_c" name="an L-1-phosphatidylethanolamine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_MET_c" id="M_MET_c" name="L-methionine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 149.211</p>
            <p>smiles: CSCC[C@H]([NH3+])C([O-])=O</p>
            <p>inchikey: FFEARJCKVFRZRR-BYPYZUCNSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_MET_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C5H11NO2S/c1-9-3-2-4(6)5(7)8/h4H,2-3,6H2,1H3,(H,7,8)/t4-/m0/s1"/>
                </rdf:Bag>
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        </annotation>
      </species>
      <species metaid="M_CPD0__45__2015_c" id="M_CPD0__45__2015_c" name="N-&amp;alpha;-acetyl-L-methionine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H12NO3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 190.241</p>
            <p>smiles: CSCC[C@H](NC(C)=O)C([O-])=O</p>
            <p>inchikey: XUYPXLNMDZIRQH-LURJTMIESA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD0__45__2015_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
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                </rdf:Bag>
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      <species metaid="M_L__45__DELTA1__45__PYRROLINE_5__45__CARBOXYLATE_c" id="M_L__45__DELTA1__45__PYRROLINE_5__45__CARBOXYLATE_c" name="(S)-1-pyrroline-5-carboxylate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H6NO2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 112.1072</p>
            <p>smiles: [H][C@]1(CCC=N1)C([O-])=O</p>
            <p>inchikey: DWAKNKKXGALPNW-BYPYZUCNSA-M</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_L__45__DELTA1__45__PYRROLINE_5__45__CARBOXYLATE_c">
              <bqbiol:isVersionOf>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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        </annotation>
      </species>
      <species metaid="M_CPD__45__11524_c" id="M_CPD__45__11524_c" name="OPC6-3-ketoacyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H54N7O19P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1025.849</p>
            <p>smiles: [H]\C(CC)=C(/[H])CC1([H])C(=O)CCC1([H])CCCC(=O)CC(=O)SCC[NH+]=C([O-])CC[NH+]=C([O-])[C@]([H])(O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@@]1([H])O[C@@]([H])(n2cnc3c(N)ncnc23)[C@]([H])(O)[C@]1([H])OP([O-])([O-])=O</p>
            <p>inchikey: ADGIRVMSHGGGHU-JYNUABGASA-J</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_CPD__45__11524_c">
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        </annotation>
      </species>
      <species metaid="M_CPD__45__7066_c" id="M_CPD__45__7066_c" name="(2R,3S)-3-methylmalate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H6O5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 146.0992</p>
            <p>smiles: C[C@@H]([C@@H](O)C([O-])=O)C([O-])=O</p>
            <p>inchikey: NPYQJIHHTGFBLN-STHAYSLISA-L</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_CPD__45__7066_c">
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      </species>
      <species metaid="M_CPD__45__11523_c" id="M_CPD__45__11523_c" name="OPC6-3-hydroxyacyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H56N7O19P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1027.865</p>
            <p>smiles: [H]\C(CC)=C(/[H])CC1([H])C(=O)CCC1([H])CCCC([H])(O)CC(=O)SCC[NH+]=C([O-])CC[NH+]=C([O-])[C@]([H])(O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@@]1([H])O[C@@]([H])(n2cnc3c(N)ncnc23)[C@]([H])(O)[C@]1([H])OP([O-])([O-])=O</p>
            <p>inchikey: OMDQVIUYDJAWHX-QUEZHLOUSA-J</p>
          </body>
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        <notes>
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            <p>mass: 999.811</p>
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        <notes>
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        <notes>
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            <p>mass: 322.2669</p>
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            <p>mass: 819.568</p>
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            <p>mass: 1011.865</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 983.812</p>
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      <species metaid="M_PRPP_c" id="M_PRPP_c" name="5-phospho-&amp;alpha;-D-ribose 1-diphosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C5H8O14P3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 385.0326</p>
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            <p>inchikey: PQGCEDQWHSBAJP-TXICZTDVSA-I</p>
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            <rdf:Description rdf:about="#M_PRPP_c">
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      <species metaid="M_OROTIDINE__45__5__45__PHOSPHATE_c" id="M_OROTIDINE__45__5__45__PHOSPHATE_c" name="orotidine 5&apos;-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H10N2O11P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 365.1686</p>
            <p>smiles: O[C@H]1[C@@H](O)[C@@H](O[C@@H]1COP([O-])([O-])=O)n1c(cc(=O)[nH]c1=O)C([O-])=O</p>
            <p>inchikey: KYOBSHFOBAOFBF-XVFCMESISA-K</p>
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      <species metaid="M_UMP_c" id="M_UMP_c" name="UMP" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H11N2O9P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 322.1665</p>
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            <p>inchikey: DJJCXFVJDGTHFX-XVFCMESISA-L</p>
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        </notes>
        <annotation>
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      <species metaid="M_TDP_c" id="M_TDP_c" name="dTDP" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H13N2O11P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 399.1662</p>
            <p>smiles: Cc1cn([C@H]2C[C@H](O)[C@@H](COP([O-])(=O)OP([O-])([O-])=O)O2)c(=O)[nH]c1=O</p>
            <p>inchikey: UJLXYODCHAELLY-XLPZGREQSA-K</p>
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        <annotation>
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      <species metaid="M_TTP_c" id="M_TTP_c" name="dTTP" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H13N2O14P3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 478.1387</p>
            <p>smiles: Cc1cn([C@H]2C[C@H](O)[C@@H](COP([O-])(=O)OP([O-])(=O)OP([O-])([O-])=O)O2)c(=O)[nH]c1=O</p>
            <p>inchikey: NHVNXKFIZYSCEB-XLPZGREQSA-J</p>
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        </notes>
        <annotation>
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      <species metaid="M_METHYLENE__45__THF__45__GLU__45__N_c" id="M_METHYLENE__45__THF__45__GLU__45__N_c" name="a 5,10-methylene-tetrahydrofolate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_DUMP_c" id="M_DUMP_c" name="dUMP" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H11N2O8P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 306.1671</p>
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            <p>inchikey: JSRLJPSBLDHEIO-SHYZEUOFSA-L</p>
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      <species metaid="M_DIHYDROFOLATE__45__GLU__45__N_c" id="M_DIHYDROFOLATE__45__GLU__45__N_c" name="a 7,8-dihydrofolate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H19N7O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 441.3986</p>
            <p>smiles: Nc1nc2NCC(CNc3ccc(cc3)C(=O)N[C@@H](CCC([O-])=O)C([O-])=O)=Nc2c(=O)[nH]1</p>
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      <species metaid="M_TMP_c" id="M_TMP_c" name="dTMP" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H13N2O8P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 320.1937</p>
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            <p>inchikey: GYOZYWVXFNDGLU-XLPZGREQSA-L</p>
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      <species metaid="M_CPD__45__1083_c" id="M_CPD__45__1083_c" name="(E)-2-methylcrotonoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C26H38N7O17P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 845.605</p>
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      <species metaid="M_THIAMINE__45__PYROPHOSPHATE_c" id="M_THIAMINE__45__PYROPHOSPHATE_c" name="thiamine diphosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C12H16N4O7P2S">
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          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 422.292</p>
            <p>smiles: Cc1c(CCOP([O-])(=O)OP([O-])([O-])=O)sc[n+]1Cc1cnc(C)nc1N</p>
            <p>inchikey: AYEKOFBPNLCAJY-UHFFFAOYSA-L</p>
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        </annotation>
      </species>
      <species metaid="M_2__45__METHYL__45__3__45__HYDROXY__45__BUTYRYL__45__COA_c" id="M_2__45__METHYL__45__3__45__HYDROXY__45__BUTYRYL__45__COA_c" name="(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C26H40N7O18P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 863.62</p>
            <p>smiles: C[C@H](O)[C@H](C)C(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: PEKYNTFSOBAABV-LQUDNSJZSA-J</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_2__45__METHYL__45__3__45__HYDROXY__45__BUTYRYL__45__COA_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C26H44N7O18P3S/c1-13(14(2)34)25(39)55-8-7-28-16(35)5-6-29-23(38)20(37)26(3,4)10-48-54(45,46)51-53(43,44)47-9-15-19(50-52(40,41)42)18(36)24(49-15)33-12-32-17-21(27)30-11-31-22(17)33/h11-15,18-20,24,34,36-37H,5-10H2,1-4H3,(H,28,35)(H,29,38)(H,43,44)(H,45,46)(H2,27,30,31)(H2,40,41,42)/p-4/t13-,14-,15+,18+,19+,20-,24+/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__17400_c" id="M_CPD__45__17400_c" name="a [glycerolipid]-lesquerolate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H37O2R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CCCCCC[C@@H](O)C\C=C/CCCCCCCCCC(*)=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_CPD__45__15367_c" id="M_CPD__45__15367_c" name="auricoloyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H66N7O18P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1069.987</p>
            <p>smiles: CC\C=C/CC[C@@H](O)C\C=C/CCCCCCCCCC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: YXBOBEUNDFMUCP-UBNAOBJYSA-J</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__15367_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C41H70N7O18P3S/c1-4-5-6-15-18-29(49)19-16-13-11-9-7-8-10-12-14-17-20-32(51)70-24-23-43-31(50)21-22-44-39(54)36(53)41(2,3)26-63-69(60,61)66-68(58,59)62-25-30-35(65-67(55,56)57)34(52)40(64-30)48-28-47-33-37(42)45-27-46-38(33)48/h5-6,13,16,27-30,34-36,40,49,52-53H,4,7-12,14-15,17-26H2,1-3H3,(H,43,50)(H,44,54)(H,58,59)(H,60,61)(H2,42,45,46)(H2,55,56,57)/p-4/b6-5-,16-13-/t29-,30-,34-,35-,36+,40-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__17399_c" id="M_CPD__45__17399_c" name="a [glycerolipid]-auricolate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H35O2R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CC\C=C/CC[C@@H](O)C\C=C/CCCCCCCCCC(*)=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_CPD__45__17404_c" id="M_CPD__45__17404_c" name="a [glycerolipid]-(11Z)-eicosenoate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H37OR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CCCCCCCC\C=C/CCCCCCCCCC(*)=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_CPD__45__15363_c" id="M_CPD__45__15363_c" name="(11Z)-icosenoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H68N7O17P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1056.004</p>
            <p>smiles: CCCCCCCC\C=C/CCCCCCCCCC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: ZDRKXADSROCWCG-FVLDFCIYSA-J</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__15363_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C41H72N7O17P3S/c1-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-32(50)69-25-24-43-31(49)22-23-44-39(53)36(52)41(2,3)27-62-68(59,60)65-67(57,58)61-26-30-35(64-66(54,55)56)34(51)40(63-30)48-29-47-33-37(42)45-28-46-38(33)48/h11-12,28-30,34-36,40,51-52H,4-10,13-27H2,1-3H3,(H,43,49)(H,44,53)(H,57,58)(H,59,60)(H2,42,45,46)(H2,54,55,56)/p-4/b12-11-/t30-,34-,35-,36+,40-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_L__45__methionyl__45__tRNAfmet_c" id="M_L__45__methionyl__45__tRNAfmet_c" name="an L-methionyl-[initiator tRNAmet]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Initiation__45__tRNAmet_c" id="M_Initiation__45__tRNAmet_c" name="initiator tRNAmet" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Protein__45__formylglycine_c" id="M_Protein__45__formylglycine_c" name="a [sulfatase]-3-oxo-L-alanine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H3NO2R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [H]C(=O)[C@H](N*)C(*)=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_HS_c" id="M_HS_c" name="hydrogen sulfide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="HS">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 33.073</p>
            <p>smiles: [S-][H]</p>
            <p>inchikey: RWSOTUBLDIXVET-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_HS_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/H2S/h1H2/p-1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Disulfides_c" id="M_Disulfides_c" name="a disulfide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Thiols_c" id="M_Thiols_c" name="a thiol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="HSR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: S[*]</p>
          </body>
        </notes>
      </species>
      <species metaid="M_Sulfatase__45__L__45__cysteine_c" id="M_Sulfatase__45__L__45__cysteine_c" name="a [sulfatase]-L-cysteine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C3H6NOSR2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: SC[C@H]([NH2+]*)C(*)=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_Long__45__Chain__45__Acyl__45__CoAs_c" id="M_Long__45__Chain__45__Acyl__45__CoAs_c" name="a long-chain acyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C22H31N7O17P3SR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12)[C@@H](O)C(=O)NCCC(=O)NCCSC([*])=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_ACYL__45__SN__45__GLYCEROL__45__3P_c" id="M_ACYL__45__SN__45__GLYCEROL__45__3P_c" name="a 1-acyl-sn-glycerol 3-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H6O7PR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: O[C@H](COC([*])=O)COP([O-])([O-])=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_L__45__PHOSPHATIDATE_c" id="M_L__45__PHOSPHATIDATE_c" name="a 1,2-diacyl-sn-glycerol 3-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H16N3O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 286.2618</p>
            <p>smiles: [NH3+][C@@H](CC([O-])=O)C(=O)NCC(=O)N1CCC[C@H]1C([O-])=O</p>
            <p>inchikey: POTCZYQVVNXUIG-BQBZGAKWSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_L__45__PHOSPHATIDATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C11H17N3O6/c12-6(4-9(16)17)10(18)13-5-8(15)14-3-1-2-7(14)11(19)20/h6-7H,1-5,12H2,(H,13,18)(H,16,17)(H,19,20)/p-1/t6-,7-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_D__45__MYO__45__INOSITOL__45__1__45__MONOPHOSPHATE_c" id="M_D__45__MYO__45__INOSITOL__45__1__45__MONOPHOSPHATE_c" name="1D-myo-inositol 1-monophosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 258.121</p>
            <p>smiles: O[C@H]1[C@H](O)[C@@H](O)[C@H](OP([O-])([O-])=O)[C@H](O)[C@@H]1O</p>
            <p>inchikey: INAPMGSXUVUWAF-UOTPTPDRSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_D__45__MYO__45__INOSITOL__45__1__45__MONOPHOSPHATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C6H13O9P/c7-1-2(8)4(10)6(5(11)3(1)9)15-16(12,13)14/h1-11H,(H2,12,13,14)/p-2/t1-,2-,3+,4-,5-,6-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_L__45__1__45__phosphatidyl__45__inositols_c" id="M_L__45__1__45__phosphatidyl__45__inositols_c" name="an L-1-phosphatidyl-inositol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Deoxyhypusine__45__Synthase__45__Lysine_c" id="M_Deoxyhypusine__45__Synthase__45__Lysine_c" name="a [deoxyhypusine synthase]-L-lysine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C6H14N2OR2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [NH3+]CCCC[C@H]([NH2+]*)C(*)=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_ERYTHROSE__45__4P_c" id="M_ERYTHROSE__45__4P_c" name="D-erythrose 4-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H7O7P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 198.069</p>
            <p>smiles: [H]C(=O)[C@H](O)[C@H](O)COP([O-])([O-])=O</p>
            <p>inchikey: NGHMDNPXVRFFGS-IUYQGCFVSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_ERYTHROSE__45__4P_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C4H9O7P/c5-1-3(6)4(7)2-11-12(8,9)10/h1,3-4,6-7H,2H2,(H2,8,9,10)/p-2/t3-,4+/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_PHOSPHO__45__ENOL__45__PYRUVATE_c" id="M_PHOSPHO__45__ENOL__45__PYRUVATE_c" name="phosphoenolpyruvate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C3H2O6P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 165.0198</p>
            <p>smiles: [O-]C(=O)C(=C)OP([O-])([O-])=O</p>
            <p>inchikey: DTBNBXWJWCWCIK-UHFFFAOYSA-K</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_PHOSPHO__45__ENOL__45__PYRUVATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C3H5O6P/c1-2(3(4)5)9-10(6,7)8/h1H2,(H,4,5)(H2,6,7,8)/p-3"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_8__45__AMINO__45__7__45__OXONONANOATE_c" id="M_8__45__AMINO__45__7__45__OXONONANOATE_c" name="8-amino-7-oxononanoate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H17NO3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 187.2362</p>
            <p>smiles: CC([NH3+])C(=O)CCCCCC([O-])=O</p>
            <p>inchikey: GUAHPAJOXVYFON-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_8__45__AMINO__45__7__45__OXONONANOATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C9H17NO3/c1-7(10)8(11)5-3-2-4-6-9(12)13/h7H,2-6,10H2,1H3,(H,12,13)"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_DIAMINONONANOATE_c" id="M_DIAMINONONANOATE_c" name="7,8-diaminopelargonate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C9H21N2O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 189.2747</p>
            <p>smiles: CC([NH3+])C([NH3+])CCCCCC([O-])=O</p>
            <p>inchikey: KCEGBPIYGIWCDH-UHFFFAOYSA-O</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_DIAMINONONANOATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C9H20N2O2/c1-7(10)8(11)5-3-2-4-6-9(12)13/h7-8H,2-6,10-11H2,1H3,(H,12,13)/p+1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_S__45__ADENOSYL__45__4__45__METHYLTHIO__45__2__45__OXOBUTANOATE_c" id="M_S__45__ADENOSYL__45__4__45__METHYLTHIO__45__2__45__OXOBUTANOATE_c" name="S-adenosyl-4-methylthio-2-oxobutanoate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H19N5O6S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 397.406</p>
            <p>smiles: C[S+](CCC(=O)C([O-])=O)C[C@H]1O[C@H]([C@H](O)[C@@H]1O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: UOKVQQMBGVMXPU-CJPDYEHRSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_S__45__ADENOSYL__45__4__45__METHYLTHIO__45__2__45__OXOBUTANOATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C15H19N5O6S/c1-27(3-2-7(21)15(24)25)4-8-10(22)11(23)14(26-8)20-6-19-9-12(16)17-5-18-13(9)20/h5-6,8,10-11,14,22-23H,2-4H2,1H3,(H2-,16,17,18,24,25)/t8-,10-,11-,14-,27?/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_DCDP_c" id="M_DCDP_c" name="dCDP" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H12N3O10P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 384.1548</p>
            <p>smiles: [H][C@]1(COP([O-])(=O)OP([O-])([O-])=O)O[C@]([H])(C[C@@H]1O)n1ccc(N)nc1=O</p>
            <p>inchikey: FTDHDKPUHBLBTL-SHYZEUOFSA-K</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_DCDP_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C9H15N3O10P2/c10-7-1-2-12(9(14)11-7)8-3-5(13)6(21-8)4-20-24(18,19)22-23(15,16)17/h1-2,5-6,8,13H,3-4H2,(H,18,19)(H2,10,11,14)(H2,15,16,17)/p-3/t5-,6+,8+/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_DCTP_c" id="M_DCTP_c" name="dCTP" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C9H12N3O13P3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 463.1274</p>
            <p>smiles: Nc1ccn([C@H]2C[C@H](O)[C@@H](COP([O-])(=O)OP([O-])(=O)OP([O-])([O-])=O)O2)c(=O)n1</p>
            <p>inchikey: RGWHQCVHVJXOKC-SHYZEUOFSA-J</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_DCTP_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C9H16N3O13P3/c10-7-1-2-12(9(14)11-7)8-3-5(13)6(23-8)4-22-27(18,19)25-28(20,21)24-26(15,16)17/h1-2,5-6,8,13H,3-4H2,(H,18,19)(H,20,21)(H2,10,11,14)(H2,15,16,17)/p-4/t5-,6+,8+/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CDPDIACYLGLYCEROL_c" id="M_CDPDIACYLGLYCEROL_c" name="a CDP-diacylglycerol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C14H17N3O15P2R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: Nc1ccn([C@@H]2O[C@H](COP([O-])(=O)OP([O-])(=O)OC[C@@H](COC([*])=O)OC([*])=O)[C@@H](O)[C@H]2O)c(=O)n1</p>
          </body>
        </notes>
      </species>
      <species metaid="M_CPD__45__8609_c" id="M_CPD__45__8609_c" name="4,4-dimethyl-5-&amp;alpha;-cholesta-8,14-dien-3-&amp;beta;-ol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H48O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 412.6908</p>
            <p>smiles: [H][C@@]1(CC=C2C3=C(CC[C@]12C)[C@@]1(C)CC[C@H](O)C(C)(C)[C@]1([H])CC3)[C@H](C)CCCC(C)C</p>
            <p>inchikey: OGQJUYXFIOFTMA-PBJLWWPKSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__8609_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C29H48O/c1-19(2)9-8-10-20(3)22-12-13-23-21-11-14-25-27(4,5)26(30)16-18-29(25,7)24(21)15-17-28(22,23)6/h13,19-20,22,25-26,30H,8-12,14-18H2,1-7H3/t20-,22-,25+,26+,28-,29-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__4702_c" id="M_CPD__45__4702_c" name="4&amp;alpha;-carboxy-5&amp;alpha;-cholesta-8,24-dien-3&amp;beta;-ol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H43O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 427.6398</p>
            <p>smiles: [H][C@@]1(CC[C@@]2([H])C3=C(CC[C@]12C)[C@@]1(C)CC[C@H](O)C(C([O-])=O)[C@]1([H])CC3)[C@H](C)CCC=C(C)C</p>
            <p>inchikey: JHIWIFRQJXLNEU-XSJUYMIFSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__4702_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C28H44O3/c1-17(2)7-6-8-18(3)20-11-12-21-19-9-10-23-25(26(30)31)24(29)14-16-28(23,5)22(19)13-15-27(20,21)4/h7,18,20-21,23-25,29H,6,8-16H2,1-5H3,(H,30,31)/p-1/t18-,20-,21+,23+,24+,25?,27-,28-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_4__45__METHYL__45__824__45__CHOLESTADIENOL_c" id="M_4__45__METHYL__45__824__45__CHOLESTADIENOL_c" name="4&amp;alpha;-methyl-5&amp;alpha;-cholesta-8,24-dien-3&amp;beta;-ol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H46O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 398.6642</p>
            <p>smiles: [H][C@@]1(CC[C@@]2([H])C3=C(CC[C@]12C)[C@@]1(C)CC[C@H](O)[C@@H](C)[C@]1([H])CC3)[C@H](C)CCC=C(C)C</p>
            <p>inchikey: FOUJWBXBKVVHCJ-YIJYGBTNSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_4__45__METHYL__45__824__45__CHOLESTADIENOL_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C28H46O/c1-18(2)8-7-9-19(3)22-12-13-24-21-10-11-23-20(4)26(29)15-17-28(23,6)25(21)14-16-27(22,24)5/h8,19-20,22-24,26,29H,7,9-17H2,1-6H3/t19-,20+,22-,23+,24+,26+,27-,28+/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_HOMO__45__CIT_c" id="M_HOMO__45__CIT_c" name="(2R)-homocitrate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C7H7O7">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 203.1279</p>
            <p>smiles: O[C@](CCC([O-])=O)(CC([O-])=O)C([O-])=O</p>
            <p>inchikey: XKJVEVRQMLKSMO-SSDOTTSWSA-K</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_HOMO__45__CIT_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C7H10O7/c8-4(9)1-2-7(14,6(12)13)3-5(10)11/h14H,1-3H2,(H,8,9)(H,10,11)(H,12,13)/p-3/t7-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_HOMO__45__I__45__CIT_c" id="M_HOMO__45__I__45__CIT_c" name="(1R,2S)-homoisocitrate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C7H7O7">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 203.1279</p>
            <p>smiles: O[C@H]([C@H](CCC([O-])=O)C([O-])=O)C([O-])=O</p>
            <p>inchikey: OEJZZCGRGVFWHK-WVZVXSGGSA-K</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_HOMO__45__I__45__CIT_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C7H10O7/c8-4(9)2-1-3(6(11)12)5(10)7(13)14/h3,5,10H,1-2H2,(H,8,9)(H,11,12)(H,13,14)/p-3/t3-,5+/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__465_c" id="M_CPD__45__465_c" name="presqualene diphosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C30H49O7P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 583.655</p>
            <p>smiles: CC(C)=CCC\C(C)=C\CC\C(C)=C\[C@H]1[C@H](COP([O-])(=O)OP([O-])([O-])=O)[C@@]1(C)CC\C=C(/C)CCC=C(C)C</p>
            <p>inchikey: ATZKAUGGNMSCCY-VYCBRMPGSA-K</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__465_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C30H52O7P2/c1-23(2)13-9-15-25(5)17-11-18-27(7)21-28-29(22-36-39(34,35)37-38(31,32)33)30(28,8)20-12-19-26(6)16-10-14-24(3)4/h13-14,17,19,21,28-29H,9-12,15-16,18,20,22H2,1-8H3,(H,34,35)(H2,31,32,33)/p-3/b25-17+,26-19+,27-21+/t28-,29-,30-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_SQUALENE_c" id="M_SQUALENE_c" name="squalene" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H50">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 410.718</p>
            <p>smiles: CC(C)=CCC\C(C)=C\CC\C(C)=C\CC\C=C(/C)CC\C=C(/C)CCC=C(C)C</p>
            <p>inchikey: YYGNTYWPHWGJRM-AAJYLUCBSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_SQUALENE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_PHOSPHORYL__45__ETHANOLAMINE_c" id="M_PHOSPHORYL__45__ETHANOLAMINE_c" name="O-phosphoethanolamine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H7NO4P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 140.0556</p>
            <p>smiles: [NH3+]CCOP([O-])([O-])=O</p>
            <p>inchikey: SUHOOTKUPISOBE-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_PHOSPHORYL__45__ETHANOLAMINE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C2H8NO4P/c3-1-2-7-8(4,5)6/h1-3H2,(H2,4,5,6)/p-1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
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        </annotation>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 396.4797</p>
            <p>smiles: CCCCCCCCCCCCCC[C@@H](O)[C@@H](O)[C@@H]([NH3+])COP([O-])([O-])=O</p>
            <p>inchikey: AYGOSKULTISFCW-KSZLIROESA-M</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 256.4241</p>
            <p>smiles: [H]C(=O)C(O)CCCCCCCCCCCCCC</p>
            <p>inchikey: BKBDVQVDRVGXKT-UHFFFAOYSA-N</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 302.5152</p>
            <p>smiles: CCCCCCCCCCCCCCC[C@@H](O)[C@@H]([NH3+])CO</p>
            <p>inchikey: OTKJDMGTUTTYMP-ZWKOTPCHSA-O</p>
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        </notes>
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            <p>smiles: CCCCCCCCCCCCCCC[C@@H](O)[C@H](CO)NC([*])=O</p>
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        </notes>
      </species>
      <species metaid="M_CPD__45__14772_c" id="M_CPD__45__14772_c" name="hexadecanedioyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C37H59N7O19P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1030.889</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 437.4433</p>
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            <p>inchikey: LSETUZAYSCHYKL-QGZVFWFLSA-K</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 170.0589</p>
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            <p>inchikey: AWUCVROLDVIAJX-GSVOUGTGSA-L</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 713.2312</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      <species metaid="M_PHOSPHORIBOSYL__45__AMP_c" id="M_PHOSPHORIBOSYL__45__AMP_c" name="1-(5-phospho-&amp;beta;-D-ribosyl)-AMP" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C15H19N5O14P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 555.2862</p>
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      <species metaid="M_ETF__45__Reduced_c" id="M_ETF__45__Reduced_c" name="a reduced electron-transfer flavoprotein" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      <species metaid="M_2__45__METHYL__45__BUTYRYL__45__COA_c" id="M_2__45__METHYL__45__BUTYRYL__45__COA_c" name="2-methylbutanoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C26H40N7O17P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 847.621</p>
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      <species metaid="M_3__45__5__45__ADP_c" id="M_3__45__5__45__ADP_c" name="adenosine 3&apos;,5&apos;-bisphosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H11N5O10P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 423.1716</p>
            <p>smiles: Nc1ncnc2n(cnc12)[C@@H]1O[C@H](COP([O-])([O-])=O)[C@@H](OP([O-])([O-])=O)[C@H]1O</p>
            <p>inchikey: WHTCPDAXWFLDIH-KQYNXXCUSA-J</p>
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      <species metaid="M_OCTAPRENYL__45__METHYL__45__METHOXY__45__BENZQ_c" id="M_OCTAPRENYL__45__METHYL__45__METHOXY__45__BENZQ_c" name="6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C48H74O3">
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            <p>mass: 699.0994</p>
            <p>smiles: COc1cc(O)c(C)c(C\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CCC=C(C)C)c1O</p>
            <p>inchikey: HDSGDGSLNMIMKU-KFSSTAEESA-N</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_OCTAPRENYL__45__METHOXY__45__BENZOQUINONE_c" id="M_OCTAPRENYL__45__METHOXY__45__BENZOQUINONE_c" name="2-methoxy-6-all trans-octaprenyl-2-methoxy-1,4-benzoquinol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H72O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 685.0728</p>
            <p>smiles: COc1cc(O)cc(C\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CCC=C(C)C)c1O</p>
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        <annotation>
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            <rdf:Description rdf:about="#M_OCTAPRENYL__45__METHOXY__45__BENZOQUINONE_c">
              <bqbiol:isVersionOf>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
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        </annotation>
      </species>
      <species metaid="M_Apocytochromes__45__c_c" id="M_Apocytochromes__45__c_c" name="an apo-[c-type cytochrome]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_HEME_C_c" id="M_HEME_C_c" name="heme c" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H36FeN4O4S2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 684.649</p>
            <p>smiles: CC(S)C1=C(C)C2=Cc3c(C(C)S)c(C)c4C=C5C(C)=C(CCC(O)=O)C6=[N+]5[Fe--]5(n34)n3c(=CC1=[N+]25)c(C)c(CCC(O)=O)c3=C6</p>
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            <rdf:Description rdf:about="#M_HEME_C_c">
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          </rdf:RDF>
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      <species metaid="M_Cytochromes__45__c_c" id="M_Cytochromes__45__c_c" name="a c-type cytochrome" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_HOMO__45__CIS__45__ACONITATE_c" id="M_HOMO__45__CIS__45__ACONITATE_c" name="cis-homoaconitate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C7H5O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 185.1126</p>
            <p>smiles: [O-]C(=O)CC\C(=C\C([O-])=O)C([O-])=O</p>
            <p>inchikey: BJYPZFUWWJSAKC-ARJAWSKDSA-K</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_HOMO__45__CIS__45__ACONITATE_c">
              <bqbiol:isVersionOf>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_PROTEIN__45__C__45__TERMINAL__45__S__45__ETC__45__CYSTEINE_c" id="M_PROTEIN__45__C__45__TERMINAL__45__S__45__ETC__45__CYSTEINE_c" name="a [protein] C-terminal S-farnesyl-L-cysteine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__7100_c" id="M_CPD__45__7100_c" name="(2S)-2-isopropyl-3-oxosuccinate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C7H8O5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 172.1365</p>
            <p>smiles: CC(C)[C@H](C([O-])=O)C(=O)C([O-])=O</p>
            <p>inchikey: HIIZAGQWABAMRR-BYPYZUCNSA-L</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_CPD__45__7100_c">
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_METOH_c" id="M_METOH_c" name="methanol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH4O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 32.0419</p>
            <p>smiles: CO</p>
            <p>inchikey: OKKJLVBELUTLKV-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_METOH_c">
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                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/CH4O/c1-2/h2H,1H3"/>
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      <species metaid="M_CPD__45__10546_c" id="M_CPD__45__10546_c" name="methyl (indol-3-yl)acetate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H11NO2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 189.2105</p>
            <p>smiles: COC(=O)Cc1c[nH]c2ccccc12</p>
            <p>inchikey: KTHADMDGDNYQRX-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_CPD__45__10546_c">
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      <species metaid="M_2K__45__4CH3__45__PENTANOATE_c" id="M_2K__45__4CH3__45__PENTANOATE_c" name="4-methyl-2-oxopentanoate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 129.1344</p>
            <p>smiles: CC(C)CC(=O)C([O-])=O</p>
            <p>inchikey: BKAJNAXTPSGJCU-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_2K__45__4CH3__45__PENTANOATE_c">
              <bqbiol:isVersionOf>
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      <species metaid="M_CPD__45__7105_c" id="M_CPD__45__7105_c" name="diprenylphlorisovalerophenone" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H30O4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 346.4605</p>
            <p>smiles: CC(C)CC(=O)c1c(O)c(CC=C(C)C)c(O)c(CC=C(C)C)c1O</p>
            <p>inchikey: NQYBQBZOHCACCR-UHFFFAOYSA-N</p>
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        <annotation>
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      <species metaid="M_CPD__45__7109_c" id="M_CPD__45__7109_c" name="4-prenylphlorisovalerophenone" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H22O4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 278.3435</p>
            <p>smiles: CC(C)CC(=O)c1c(O)cc(O)c(CC=C(C)C)c1O</p>
            <p>inchikey: LWLGKGHHVBVDKB-UHFFFAOYSA-N</p>
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        <annotation>
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      </species>
      <species metaid="M_5__45__HYDROXY__45__CTP_c" id="M_5__45__HYDROXY__45__CTP_c" name="5-hydroxy-CTP" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C9H12N3O15P3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 495.1262</p>
            <p>smiles: [H][C@]1(COP([O-])(=O)OP([O-])(=O)OP([O-])([O-])=O)O[C@@]([H])(n2cc(O)c(=N)[nH+]c2[O-])[C@]([H])(O)[C@]1([H])O</p>
            <p>inchikey: DMFODUNDODUQKK-UAKXSSHOSA-J</p>
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        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_5__45__HYDROXY__45__CTP_c">
              <bqbiol:isVersionOf>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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        </annotation>
      </species>
      <species metaid="M_INDOLE_ACETATE_AUXIN_c" id="M_INDOLE_ACETATE_AUXIN_c" name="indole-3-acetate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H8NO2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 174.1766</p>
            <p>smiles: [O-]C(=O)Cc1c[nH]c2ccccc12</p>
            <p>inchikey: SEOVTRFCIGRIMH-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_INDOLE_ACETATE_AUXIN_c">
              <bqbiol:isVersionOf>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_INDOLE_ACETALDEHYDE_c" id="M_INDOLE_ACETALDEHYDE_c" name="indole acetaldehyde" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_3__45__METHYL__45__1__45__246__45__TRIHYDROXYPHENYLBUTAN_c" id="M_3__45__METHYL__45__1__45__246__45__TRIHYDROXYPHENYLBUTAN_c" name="phlorisovalerophenone" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H14O4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 210.2265</p>
            <p>smiles: CC(C)CC(=O)c1c(O)cc(O)cc1O</p>
            <p>inchikey: VSDWHZGJGWMIRN-UHFFFAOYSA-N</p>
          </body>
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            <rdf:Description rdf:about="#M_3__45__METHYL__45__1__45__246__45__TRIHYDROXYPHENYLBUTAN_c">
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                </rdf:Bag>
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        </annotation>
      </species>
      <species metaid="M_BIOTIN_c" id="M_BIOTIN_c" name="biotin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H15N2O3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 243.303</p>
            <p>smiles: [H][C@]12CS[C@@H](CCCCC([O-])=O)[C@@]1([H])NC(=O)N2</p>
            <p>inchikey: YBJHBAHKTGYVGT-ZKWXMUAHSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_BIOTIN_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C10H16N2O3S/c13-8(14)4-2-1-3-7-9-6(5-16-7)11-10(15)12-9/h6-7,9H,1-5H2,(H,13,14)(H2,11,12,15)/p-1/t6-,7-,9-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_BIO__45__5__45__AMP_c" id="M_BIO__45__5__45__AMP_c" name="biotinyl-5&apos;-adenylate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27N7O9PS">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 572.509</p>
            <p>smiles: [H][C@]12CS[C@@H](CCCCC(=O)OP([O-])(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n3cnc4c(N)ncnc34)[C@@]1([H])NC(=O)N2</p>
            <p>inchikey: UTQCSTJVMLODHM-RHCAYAJFSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__7107_c" id="M_CPD__45__7107_c" name="diprenylphlorisobutyrophenone" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H28O4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 332.4339</p>
            <p>smiles: CC(C)C(=O)c1c(O)c(CC=C(C)C)c(O)c(CC=C(C)C)c1O</p>
            <p>inchikey: KKFIZYKKQLWBKH-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_CPD__45__7107_c">
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_KYNURENATE_c" id="M_KYNURENATE_c" name="kynurenate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H6NO3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 188.1601</p>
            <p>smiles: Oc1cc(nc2ccccc12)C([O-])=O</p>
            <p>inchikey: HCZHHEIFKROPDY-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_KYNURENATE_c">
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                </rdf:Bag>
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      <species metaid="M_4__45__PRENYLPHLORISOBUTYROPHENONE_c" id="M_4__45__PRENYLPHLORISOBUTYROPHENONE_c" name="4-prenylphlorisobutyrophenone" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H20O4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 264.3169</p>
            <p>smiles: CC(C)C(=O)c1c(O)cc(O)c(CC=C(C)C)c1O</p>
            <p>inchikey: IOBXAMCSYCVNET-UHFFFAOYSA-N</p>
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        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_4__45__PRENYLPHLORISOBUTYROPHENONE_c">
              <bqbiol:isVersionOf>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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          </rdf:RDF>
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      <species metaid="M_CPD__45__7137_c" id="M_CPD__45__7137_c" name="pelargonidin-3,5-di-O-&amp;beta;-D-glucoside" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H30O15">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 594.5181</p>
            <p>smiles: OC[C@H]1O[C@@H](Oc2cc3c(O[C@@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@H]4O)cc([O-])cc3[o+]c2-c2ccc(O)cc2)[C@H](O)[C@@H](O)[C@@H]1O</p>
            <p>inchikey: SLCKJKWFULXZBD-ZOTFFYTFSA-N</p>
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        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__7137_c">
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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        </annotation>
      </species>
      <species metaid="M_Oxidized__45__NrdH__45__Proteins_c" id="M_Oxidized__45__NrdH__45__Proteins_c" name="an oxidized NrdH glutaredoxin-like protein" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_PELARGONIDIN__45__3__45__GLUCOSIDE__45__CMPD_c" id="M_PELARGONIDIN__45__3__45__GLUCOSIDE__45__CMPD_c" name="pelargonidin-3-O-&amp;beta;-D-glucoside" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H20O10">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 432.3775</p>
            <p>smiles: OC[C@H]1O[C@@H](Oc2cc3c([O-])cc(O)cc3[o+]c2-c2ccc(O)cc2)[C@H](O)[C@@H](O)[C@@H]1O</p>
            <p>inchikey: ABVCUBUIXWJYSE-GQUPQBGVSA-N</p>
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        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_PELARGONIDIN__45__3__45__GLUCOSIDE__45__CMPD_c">
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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        </annotation>
      </species>
      <species metaid="M_UDP_c" id="M_UDP_c" name="UDP" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H11N2O12P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 401.139</p>
            <p>smiles: O[C@H]1[C@@H](O)[C@@H](O[C@@H]1COP([O-])(=O)OP([O-])([O-])=O)n1ccc(=O)[nH]c1=O</p>
            <p>inchikey: XCCTYIAWTASOJW-XVFCMESISA-K</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_UDP_c">
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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        </annotation>
      </species>
      <species metaid="M_CPD__45__476_c" id="M_CPD__45__476_c" name="4-(2-aminophenyl)-2,4-dioxobutanoate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H8NO4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 206.1754</p>
            <p>smiles: Nc1ccccc1C(=O)CC(=O)C([O-])=O</p>
            <p>inchikey: CAOVWYZQMPNAFJ-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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      </species>
      <species metaid="M_DUDP_c" id="M_DUDP_c" name="dUDP" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H11N2O11P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 385.1396</p>
            <p>smiles: O[C@H]1C[C@@H](O[C@@H]1COP([O-])(=O)OP([O-])([O-])=O)n1ccc(=O)[nH]c1=O</p>
            <p>inchikey: QHWZTVCCBMIIKE-SHYZEUOFSA-K</p>
          </body>
        </notes>
        <annotation>
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              </bqbiol:isVersionOf>
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        </annotation>
      </species>
      <species metaid="M_Reduced__45__NrdH__45__Proteins_c" id="M_Reduced__45__NrdH__45__Proteins_c" name="a reduced NrdH glutaredoxin-like protein" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_3__45__HYDROXY__45__L__45__KYNURENINE_c" id="M_3__45__HYDROXY__45__L__45__KYNURENINE_c" name="3-hydroxy-L-kynurenine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N2O4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 224.2133</p>
            <p>smiles: Nc1c(O)cccc1C(=O)C[C@H]([NH3+])C([O-])=O</p>
            <p>inchikey: VCKPUUFAIGNJHC-LURJTMIESA-N</p>
          </body>
        </notes>
        <annotation>
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                </rdf:Bag>
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        </annotation>
      </species>
      <species metaid="M_CPD__45__11552_c" id="M_CPD__45__11552_c" name="4-(2-amino-3-hydroxyphenyl)-2,4-dioxobutanoate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H8NO5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 222.1748</p>
            <p>smiles: Nc1c(O)cccc1C(=O)CC(=O)C([O-])=O</p>
            <p>inchikey: YCJNYHCCOXVYAF-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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        </annotation>
      </species>
      <species metaid="M_CPD__45__12575_c" id="M_CPD__45__12575_c" name="UDP-&amp;alpha;-D-glucose" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H22N2O17P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 564.287</p>
            <p>smiles: OC[C@H]1O[C@H](OP([O-])(=O)OP([O-])(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)n2ccc(=O)[nH]c2=O)[C@H](O)[C@@H](O)[C@@H]1O</p>
            <p>inchikey: HSCJRCZFDFQWRP-JZMIEXBBSA-L</p>
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        </notes>
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            <rdf:Description rdf:about="#M_CPD__45__12575_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C15H24N2O17P2/c18-3-5-8(20)10(22)12(24)14(32-5)33-36(28,29)34-35(26,27)30-4-6-9(21)11(23)13(31-6)17-2-1-7(19)16-15(17)25/h1-2,5-6,8-14,18,20-24H,3-4H2,(H,26,27)(H,28,29)(H,16,19,25)/p-2/t5-,6-,8-,9-,10+,11-,12-,13-,14-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Oxidized__45__flavodoxins_c" id="M_Oxidized__45__flavodoxins_c" name="an oxidized flavodoxin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_2__45__trans__45__4__45__cis__45__dienoyl__45__CoAs_c" id="M_2__45__trans__45__4__45__cis__45__dienoyl__45__CoAs_c" name="a 2-trans-4-cis-dienoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Trans__45__3__45__enoyl__45__CoAs_c" id="M_Trans__45__3__45__enoyl__45__CoAs_c" name="a trans-3-enoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C25H35N7O17P3SR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12)[C@@H](O)C(=O)NCCC(=O)NCCSC(=O)C\C=C\[*]</p>
          </body>
        </notes>
      </species>
      <species metaid="M_Reduced__45__flavodoxins_c" id="M_Reduced__45__flavodoxins_c" name="a reduced flavodoxin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_XANTHURENATE_c" id="M_XANTHURENATE_c" name="xanthurenate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H6NO4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 204.1595</p>
            <p>smiles: Oc1cccc2c(O)cc(nc12)C([O-])=O</p>
            <p>inchikey: FBZONXHGGPHHIY-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_XANTHURENATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C10H7NO4/c12-7-3-1-2-5-8(13)4-6(10(14)15)11-9(5)7/h1-4,12H,(H,11,13)(H,14,15)/p-1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CHOLINE_c" id="M_CHOLINE_c" name="choline" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H14NO">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 104.1702</p>
            <p>smiles: C[N+](C)(C)CCO</p>
            <p>inchikey: OEYIOHPDSNJKLS-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CHOLINE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C5H14NO/c1-6(2,3)4-5-7/h7H,4-5H2,1-3H3/q+1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_GLUCOSAMINYL__45__14__45__ETCETERA__45__MANNOSYL__45__R_c" id="M_GLUCOSAMINYL__45__14__45__ETCETERA__45__MANNOSYL__45__R_c" name="N-acetyl-&amp;beta;-D-glucosaminyl-1,4-(N-acetyl-D-glucosaminyl-1,2)-&amp;alpha;-D-mannosyl-1,3-(&amp;beta;-N-acetyl-D-glucosaminyl-1,2-&amp;alpha;-D-mannosyl-1,6)-&amp;beta;-D-mannosyl-R" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_ETR__45__Quinols_c" id="M_ETR__45__Quinols_c" name="an electron-transfer quinol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_BETAINE_ALDEHYDE_c" id="M_BETAINE_ALDEHYDE_c" name="betaine aldehyde" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H12NO">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 102.1543</p>
            <p>smiles: [H]C(=O)C[N+](C)(C)C</p>
            <p>inchikey: SXKNCCSPZDCRFD-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_BETAINE_ALDEHYDE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C5H12NO/c1-6(2,3)4-5-7/h5H,4H2,1-3H3/q+1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_UDP__45__N__45__ACETYL__45__D__45__GLUCOSAMINE_c" id="M_UDP__45__N__45__ACETYL__45__D__45__GLUCOSAMINE_c" name="UDP-N-acetyl-&amp;alpha;-D-glucosamine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H25N3O17P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 605.3389</p>
            <p>smiles: CC(=O)N[C@@H]1[C@@H](O)[C@H](O)[C@@H](CO)O[C@@H]1OP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n1ccc(=O)[nH]c1=O</p>
            <p>inchikey: LFTYTUAZOPRMMI-CFRASDGPSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_UDP__45__N__45__ACETYL__45__D__45__GLUCOSAMINE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
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      </species>
      <species metaid="M_GLUCOSAMINYL__45__ETCETERA__45__MANNOSYL__45__R_c" id="M_GLUCOSAMINYL__45__ETCETERA__45__MANNOSYL__45__R_c" name="(N-acetyl-&amp;beta;-D-glucosaminyl-1,2)-&amp;alpha;-D-mannosyl-1,3-(&amp;beta;-N-acetyl-D-glucosaminyl-1,2-&amp;alpha;-D-mannosyl-1,6)-&amp;beta;-D-mannosyl-R" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C34H57N2O26R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CC(=O)N[C@@H]1[C@@H](O)[C@H](O)[C@@H](CO)O[C@H]1O[C@H]1[C@@H](O)[C@H](O)[C@@H](CO)O[C@@H]1OC[C@H]1O[C@@H](O[*])[C@@H](O)[C@@H](O[C@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]2O[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2NC(C)=O)[C@@H]1O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_FRUCTOSE__45__6P_c" id="M_FRUCTOSE__45__6P_c" name="&amp;beta;-D-fructofuranose 6-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 258.121</p>
            <p>smiles: OC[C@@]1(O)O[C@H](COP([O-])([O-])=O)[C@@H](O)[C@@H]1O</p>
            <p>inchikey: BGWGXPAPYGQALX-ARQDHWQXSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_FRUCTOSE__45__6P_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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        </annotation>
      </species>
      <species metaid="M_CPD__45__535_c" id="M_CPD__45__535_c" name="&amp;beta;-D-fructose 2,6-bisphosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C6H10O12P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 336.0861</p>
            <p>smiles: OC[C@@]1(OP([O-])([O-])=O)O[C@H](COP([O-])([O-])=O)[C@@H](O)[C@@H]1O</p>
            <p>inchikey: YXWOAJXNVLXPMU-ZXXMMSQZSA-J</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__535_c">
              <bqbiol:isVersionOf>
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                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C6H14O12P2/c7-2-6(18-20(13,14)15)5(9)4(8)3(17-6)1-16-19(10,11)12/h3-5,7-9H,1-2H2,(H2,10,11,12)(H2,13,14,15)/p-4/t3-,4-,5+,6+/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
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        </annotation>
      </species>
      <species metaid="M_GLUTAMYL__45__GLX__45__TRNAS_c" id="M_GLUTAMYL__45__GLX__45__TRNAS_c" name="an L-glutamyl-[tRNAGlx]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_GLX__45__tRNAs_c" id="M_GLX__45__tRNAs_c" name="a tRNAGlx" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="RH">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_FERULIC__45__ACID_c" id="M_FERULIC__45__ACID_c" name="ferulate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H9O4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 193.1766</p>
            <p>smiles: COc1cc(\C=C\C([O-])=O)ccc1O</p>
            <p>inchikey: KSEBMYQBYZTDHS-HWKANZROSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_FERULIC__45__ACID_c">
              <bqbiol:isVersionOf>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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      </species>
      <species metaid="M_FERULOYL__45__COA_c" id="M_FERULOYL__45__COA_c" name="feruloyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H40N7O19P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 939.673</p>
            <p>smiles: COc1cc(C=CC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2OP([O-])([O-])=O)n2cnc3c(N)ncnc23)ccc1O</p>
            <p>inchikey: GBXZVJQQDAJGSO-NBXNMEGSSA-J</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_FERULOYL__45__COA_c">
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                </rdf:Bag>
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        </annotation>
      </species>
      <species metaid="M_NN__45__DIACETYLCHITOBIOSYLDIPHOSPHODOLICHO_c" id="M_NN__45__DIACETYLCHITOBIOSYLDIPHOSPHODOLICHO_c" name="an (N-acetylglucosaminyl)2-diphosphodolichol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C96H158N2O17P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1674.2335</p>
            <p>smiles: CC(CCOP([O-])(=O)OP([O-])(=O)O[C@H]1O[C@H](CO)[C@@H](O[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2NC(C)=O)[C@H](O)[C@H]1NC(C)=O)CC\C=C(\C)CC\C=C(\C)CC\C=C(\C)CC\C=C(\C)CC\C=C(\C)CC\C=C(\C)CC\C=C(\C)CC\C=C(\C)CC\C=C(\C)CC\C=C(\C)CC\C=C(\C)CC\C=C(\C)CC\C=C(/C)CC\C=C(/C)CCC=C(C)C</p>
            <p>inchikey: AGKFOAYTTMSUFA-OXWYXBBUSA-L</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_NN__45__DIACETYLCHITOBIOSYLDIPHOSPHODOLICHO_c">
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        <notes>
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            <p>mass: 440.1783</p>
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            <p>mass: 430.7061</p>
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        <notes>
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            <p>mass: 416.6795</p>
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        <notes>
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            <p>mass: 305.1823</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1086.073</p>
            <p>smiles: CCCCCCCCCCCCCCCCCCCCCC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: NDDZLVOCGALPLR-GNSUAQHMSA-J</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__10279_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C43H78N7O17P3S/c1-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-34(52)71-27-26-45-33(51)24-25-46-41(55)38(54)43(2,3)29-64-70(61,62)67-69(59,60)63-28-32-37(66-68(56,57)58)36(53)42(65-32)50-31-49-35-39(44)47-30-48-40(35)50/h30-32,36-38,42,53-54H,4-29H2,1-3H3,(H,45,51)(H,46,55)(H,59,60)(H,61,62)(H2,44,47,48)(H2,56,57,58)/p-4/t32-,36-,37-,38+,42-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__14281_c" id="M_CPD__45__14281_c" name="trans-docos-2-enoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H72N7O17P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1084.057</p>
            <p>smiles: CCCCCCCCCCCCCCCCCCC\C=C\C(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: KRTIFNFQCJTGMV-DYAVHEMFSA-J</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__14281_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C43H76N7O17P3S/c1-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-34(52)71-27-26-45-33(51)24-25-46-41(55)38(54)43(2,3)29-64-70(61,62)67-69(59,60)63-28-32-37(66-68(56,57)58)36(53)42(65-32)50-31-49-35-39(44)47-30-48-40(35)50/h22-23,30-32,36-38,42,53-54H,4-21,24-29H2,1-3H3,(H,45,51)(H,46,55)(H,59,60)(H,61,62)(H2,44,47,48)(H2,56,57,58)/p-4/b23-22+/t32-,36-,37-,38+,42-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_SOLANESYL__45__PYROPHOSPHATE_c" id="M_SOLANESYL__45__PYROPHOSPHATE_c" name="all-trans-nonaprenyl diphosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C45H73O7P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 788.0061</p>
            <p>smiles: CC(C)=CCC\C(C)=C\CC\C(C)=C\CC\C(C)=C\CC\C(C)=C\CC\C(C)=C\CC\C(C)=C\CC\C(C)=C\CC\C(C)=C\COP([O-])(=O)OP([O-])([O-])=O</p>
            <p>inchikey: IVLBHBFTRNVIAP-MEGGAXOGSA-K</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_SOLANESYL__45__PYROPHOSPHATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C45H76O7P2/c1-37(2)19-11-20-38(3)21-12-22-39(4)23-13-24-40(5)25-14-26-41(6)27-15-28-42(7)29-16-30-43(8)31-17-32-44(9)33-18-34-45(10)35-36-51-54(49,50)52-53(46,47)48/h19,21,23,25,27,29,31,33,35H,11-18,20,22,24,26,28,30,32,34,36H2,1-10H3,(H,49,50)(H2,46,47,48)/p-3/b38-21+,39-23+,40-25+,41-27+,42-29+,43-31+,44-33+,45-35+"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_DELTA3__45__ISOPENTENYL__45__PP_c" id="M_DELTA3__45__ISOPENTENYL__45__PP_c" name="isopentenyl diphosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C5H9O7P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 243.0699</p>
            <p>smiles: CC(=C)CCOP([O-])(=O)OP([O-])([O-])=O</p>
            <p>inchikey: NUHSROFQTUXZQQ-UHFFFAOYSA-K</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_DELTA3__45__ISOPENTENYL__45__PP_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C5H12O7P2/c1-5(2)3-4-11-14(9,10)12-13(6,7)8/h1,3-4H2,2H3,(H,9,10)(H2,6,7,8)/p-3"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_GERANYL__45__PP_c" id="M_GERANYL__45__PP_c" name="geranyl diphosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H17O7P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 311.1869</p>
            <p>smiles: CC(C)=CCC\C(C)=C\COP([O-])(=O)OP([O-])([O-])=O</p>
            <p>inchikey: GVVPGTZRZFNKDS-JXMROGBWSA-K</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_GERANYL__45__PP_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C10H20O7P2/c1-9(2)5-4-6-10(3)7-8-16-19(14,15)17-18(11,12)13/h5,7H,4,6,8H2,1-3H3,(H,14,15)(H2,11,12,13)/p-3/b10-7+"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_PROTON_e" id="M_PROTON_e" name="H+" compartment="e" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1.00739</p>
            <p>smiles: [H+]</p>
            <p>inchikey: GPRLSGONYQIRFK-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_PROTON_e">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/p+1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__9973_c" id="M_CPD__45__9973_c" name="an [eIF5A-precursor]-deoxyhypusine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H22N4O2R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_DIACYLGLYCEROL_c" id="M_DIACYLGLYCEROL_c" name="a 1,2-diacyl-sn-glycerol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6O5R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: OC[C@@H](COC([*])=O)OC([*])=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_PROTEIN__45__N__45__UBIQUITYL__45__LYSINE_c" id="M_PROTEIN__45__N__45__UBIQUITYL__45__LYSINE_c" name="an N6-monoubiquitinyl-[protein]-L-lysine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C8H16N3O2R3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: *[NH2+]CC(=O)NCCCC[C@H]([NH2+]*)C(*)=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_E3__45__independent__45__Ubiquitin__45__E2__45__L__45__cysteine_c" id="M_E3__45__independent__45__Ubiquitin__45__E2__45__L__45__cysteine_c" name="an [(E3-independent) E2 ubiquitin-conjugating enzyme]-L-cysteine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C3H6NOSR2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: SC[C@H]([NH2+]*)C(*)=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_S__45__ubiquitinyl__45__E3__45__independent__45__E2__45__Cys_c" id="M_S__45__ubiquitinyl__45__E3__45__independent__45__E2__45__Cys_c" name="an S-ubiquitinyl-[(E3-independent) E2 ubiquitin-conjugating enzyme]-L-cysteine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H7N2O2SR3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: *NCC(=O)SC[C@H](N*)C(*)=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_Protein__45__L__45__lysine_c" id="M_Protein__45__L__45__lysine_c" name="a [protein]-L-lysine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C7H14N3O2R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [NH3+]CCCC[C@H](NC(*)=O)C(=O)N*</p>
          </body>
        </notes>
      </species>
      <species metaid="M_S__45__ubiquitinyl__45__UAP__45__E1__45__L__45__cysteine_c" id="M_S__45__ubiquitinyl__45__UAP__45__E1__45__L__45__cysteine_c" name="an S-ubiquitinyl-[E1 ubiquitin-activating enzyme]-L-cysteine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H7N2O2SR3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: *NCC(=O)SC[C@H](N*)C(*)=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_Ubiquitin__45__activating__45__protein__45__E1__45__L__45__cys_c" id="M_Ubiquitin__45__activating__45__protein__45__E1__45__L__45__cys_c" name="an [E1 ubiquitin-activating enzyme]-L-cysteine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C3H6NOSR2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: SC[C@H]([NH2+]*)C(*)=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_MAP__45__Kinase__45__L__45__Tyr_c" id="M_MAP__45__Kinase__45__L__45__Tyr_c" name="a [mitogen-activated protein kinase]-L-tyrosine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C9H10NO2R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: Oc1ccc(C[C@H]([NH2+]*)C(*)=O)cc1</p>
          </body>
        </notes>
      </species>
      <species metaid="M_MAP__45__Kinase__45__L__45__Phosphotyrosine_c" id="M_MAP__45__Kinase__45__L__45__Phosphotyrosine_c" name="a [mitogen-activated protein kinase] L-tyrosine phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H9NO5PR2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [O-]P([O-])(=O)Oc1ccc(C[C@H]([NH2+]*)C(*)=O)cc1</p>
          </body>
        </notes>
      </species>
      <species metaid="M_Delta7__45__Steroids_c" id="M_Delta7__45__Steroids_c" name="a &amp;Delta;7-sterol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H29OR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CC12CCC3C(=CCC4CC(O)CCC34C)C1CCC2[*]</p>
          </body>
        </notes>
      </species>
      <species metaid="M_Delta5__45__Delta7__45__Steroids_c" id="M_Delta5__45__Delta7__45__Steroids_c" name="a &amp;Delta;5,7-sterol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H27OR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CC12CCC3C(=CC=C4CC(O)CCC34C)C1CCC2[*]</p>
          </body>
        </notes>
      </species>
      <species metaid="M_STEAROYL__45__COA_c" id="M_STEAROYL__45__COA_c" name="stearoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H66N7O17P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1029.967</p>
            <p>smiles: CCCCCCCCCCCCCCCCCC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: SIARJEKBADXQJG-LFZQUHGESA-J</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_STEAROYL__45__COA_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C39H70N7O17P3S/c1-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-30(48)67-23-22-41-29(47)20-21-42-37(51)34(50)39(2,3)25-60-66(57,58)63-65(55,56)59-24-28-33(62-64(52,53)54)32(49)38(61-28)46-27-45-31-35(40)43-26-44-36(31)46/h26-28,32-34,38,49-50H,4-25H2,1-3H3,(H,41,47)(H,42,51)(H,55,56)(H,57,58)(H2,40,43,44)(H2,52,53,54)/p-4/t28-,32-,33-,34+,38-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_STEARIC_ACID_c" id="M_STEARIC_ACID_c" name="stearate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H35O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 283.4698</p>
            <p>smiles: CCCCCCCCCCCCCCCCCC([O-])=O</p>
            <p>inchikey: QIQXTHQIDYTFRH-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_STEARIC_ACID_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C18H36O2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18(19)20/h2-17H2,1H3,(H,19,20)/p-1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CDP_c" id="M_CDP_c" name="CDP" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H12N3O11P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 400.1542</p>
            <p>smiles: Nc1ccn([C@@H]2O[C@H](COP([O-])(=O)OP([O-])([O-])=O)[C@@H](O)[C@H]2O)c(=O)n1</p>
            <p>inchikey: ZWIADYZPOWUWEW-XVFCMESISA-K</p>
          </body>
        </notes>
        <annotation>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      <species metaid="M_Ox__45__Thioredoxin_c" id="M_Ox__45__Thioredoxin_c" name="an oxidized thioredoxin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H9N2O2S2R4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [*]N[C@@H](CSSC[C@H]([NH2+][*])C([*])=O)C([*])=O</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 398.6642</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 400.6801</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 412.6908</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 414.7067</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: NC1=NC(=O)C2(O)NC(CN(C=O)c3ccc(cc3)C(=O)N[C@@H](CCC([*])=O)C([O-])=O)CNC2=N1</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: Nc1nc2NCC(CN(C=O)c3ccc(cc3)C(=O)N[C@@H](CCC([*])=O)C([O-])=O)=Nc2c(=O)[nH]1</p>
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          <body xmlns="http://www.w3.org/1999/xhtml"/>
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          <body xmlns="http://www.w3.org/1999/xhtml"/>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      <species metaid="M_14__45__alpha__45__methylsteroids_c" id="M_14__45__alpha__45__methylsteroids_c" name="a 14&amp;alpha;-methylsteroid" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      <species metaid="M_Delta__45__14__45__steroids_c" id="M_Delta__45__14__45__steroids_c" name="a &amp;Delta;14steroid" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      <species metaid="M_ETR__45__Quinones_c" id="M_ETR__45__Quinones_c" name="an electron-transfer quinone" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
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          <body xmlns="http://www.w3.org/1999/xhtml"/>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 281.454</p>
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            <p>mass: 1027.951</p>
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            <p>mass: 1027.951</p>
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            <p>mass: 281.454</p>
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            <p>mass: 480.1115</p>
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      <species metaid="M_DUTP_c" id="M_DUTP_c" name="dUTP" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C9H11N2O14P3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 464.1121</p>
            <p>smiles: O[C@H]1C[C@@H](O[C@@H]1COP([O-])(=O)OP([O-])(=O)OP([O-])([O-])=O)n1ccc(=O)[nH]c1=O</p>
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      <species metaid="M_CPD__45__1302_c" id="M_CPD__45__1302_c" name="N5-methyl--tetrahydropteroyl tri-L-glutamate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C30H35N9O12">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 713.6542</p>
            <p>smiles: CN1[C@@H](CNc2ccc(cc2)C(=O)N[C@@H](CCC(=O)N[C@@H](CCC(=O)N[C@@H](CCC([O-])=O)C([O-])=O)C([O-])=O)C([O-])=O)CNc2nc(N)[nH]c(=O)c12</p>
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      <species metaid="M_Myristoyl__45__ACPs_c" id="M_Myristoyl__45__ACPs_c" name="a myristoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H27OSR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CCCCCCCCCCCCCC(=O)S[*]</p>
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        </notes>
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      <species metaid="M_CPD__45__7836_c" id="M_CPD__45__7836_c" name="myristate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H27O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 227.3635</p>
            <p>smiles: CCCCCCCCCCCCCC([O-])=O</p>
            <p>inchikey: TUNFSRHWOTWDNC-UHFFFAOYSA-M</p>
          </body>
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      <species metaid="M_HOMO__45__CYS_c" id="M_HOMO__45__CYS_c" name="L-homocysteine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 135.185</p>
            <p>smiles: [NH3+][C@@H](CCS)C([O-])=O</p>
            <p>inchikey: FFFHZYDWPBMWHY-VKHMYHEASA-N</p>
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        </notes>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 699.6276</p>
            <p>smiles: Nc1nc2NC[C@H](CNc3ccc(cc3)C(=O)N[C@@H](CCC(=O)N[C@@H](CCC(=O)N[C@@H](CCC([O-])=O)C([O-])=O)C([O-])=O)C([O-])=O)Nc2c(=O)[nH]1</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 317.2708</p>
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            <p>inchikey: WFNZGUNBSCUXFX-UHFFFAOYSA-M</p>
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        <annotation>
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      <species metaid="M_MALONYL__45__COA_c" id="M_MALONYL__45__COA_c" name="malonyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C24H33N7O19P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 848.543</p>
            <p>smiles: CC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12)[C@@H](O)C(=O)NCCC(=O)NCCSC(=O)CC([O-])=O</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [H][C@]1(CNc2ccc(cc2)C(=O)N[C@@H](CCC([*])=O)C([O-])=O)CNc2nc(N)[nH]c(=O)c2N1C</p>
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        </notes>
      </species>
      <species metaid="M_THF__45__GLU__45__N_c" id="M_THF__45__GLU__45__N_c" name="a tetrahydrofolate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      <species metaid="M_Jasmonic__45__Acids_c" id="M_Jasmonic__45__Acids_c" name="a jasmonic acid" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H17O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 209.2621</p>
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      <species metaid="M_5__45__METHYL__45__THF_c" id="M_5__45__METHYL__45__THF_c" name="N5-methyl-tetrahydropteroyl mono-L-glutamate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H23N7O6">
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          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 457.441</p>
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            <p>inchikey: ZNOVTXRBGFNYRX-STQMWFEESA-L</p>
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      <species metaid="M_THF_c" id="M_THF_c" name="tetrahydropteroyl mono-L-glutamate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H21N7O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 443.4144</p>
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            <p>inchikey: MSTNYGQPCMXVAQ-RYUDHWBXSA-L</p>
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      <species metaid="M_Methyl__45__Jasmonates_c" id="M_Methyl__45__Jasmonates_c" name="a methyl jasmonate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H20O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 224.2961</p>
            <p>smiles: CC\C=C/C[C@@H]1[C@@H](CC(=O)OC)CCC1=O</p>
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      <species metaid="M_CPD__45__11641_c" id="M_CPD__45__11641_c" name="4-methylumbelliferyl glucoside" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H18O8">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 338.3093</p>
            <p>smiles: Cc1cc(=O)oc2cc(O[C@@H]3O[C@H](CO)[C@@H](O)[C@H](O)[C@H]3O)ccc12</p>
            <p>inchikey: YUDPTGPSBJVHCN-YMILTQATSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__11641_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C16H18O8/c1-7-4-12(18)23-10-5-8(2-3-9(7)10)22-16-15(21)14(20)13(19)11(6-17)24-16/h2-5,11,13-17,19-21H,6H2,1H3/t11-,13-,14+,15-,16-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__182_c" id="M_CPD__45__182_c" name="4-methylumbelliferone" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H8O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 176.1687</p>
            <p>smiles: Cc1cc(=O)oc2cc(O)ccc12</p>
            <p>inchikey: HSHNITRMYYLLCV-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__182_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C10H8O3/c1-6-4-10(12)13-9-5-7(11)2-3-8(6)9/h2-5,11H,1H3"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_PROTEIN__45__C__45__TERMINAL__45__S__45__FARNESYL__45__L__45__CYSTEINE_c" id="M_PROTEIN__45__C__45__TERMINAL__45__S__45__FARNESYL__45__L__45__CYSTEINE_c" name="a [protein] C-terminal S-farnesyl-L-cysteine methyl ester" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_DNA__45__Cytosines_c" id="M_DNA__45__Cytosines_c" name="a cytosine in DNA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_DNA__45__N4__45__Methylcytosine_c" id="M_DNA__45__N4__45__Methylcytosine_c" name="an N4-methylcytosine in DNA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Detyrosinated__45__alpha__45____45__tubulins_c" id="M_Detyrosinated__45__alpha__45____45__tubulins_c" name="detyrosinated &amp;alpha;-tubulin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__405_c" id="M_CPD__45__405_c" name="a phosphatidyl-N-methylethanolamine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H14NO8PR2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: C[NH2+]CCOP([O-])(=O)OCC(COC([*])=O)OC([*])=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_Alpha__45__tubulins_c" id="M_Alpha__45__tubulins_c" name="&amp;alpha;-tubulin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__7670_c" id="M_CPD__45__7670_c" name="dimethyl sulfide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H6S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 62.134</p>
            <p>smiles: CSC</p>
            <p>inchikey: QMMFVYPAHWMCMS-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__7670_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C2H6S/c1-3-2/h1-2H3"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_TRIMETHYLSULFONIUM_c" id="M_TRIMETHYLSULFONIUM_c" name="trimethyl sulfonium" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C3H9S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 77.168</p>
            <p>smiles: C[S+](C)C</p>
            <p>inchikey: NRZWQKGABZFFKE-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_TRIMETHYLSULFONIUM_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C3H9S/c1-4(2)3/h1-3H3/q+1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Propionyl__45__CoA__45__CO2__45__ligases_c" id="M_Propionyl__45__CoA__45__CO2__45__ligases_c" name="[propionyl-CoA:carbon-dioxide ligase (ADP-forming)]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__160_c" id="M_CPD__45__160_c" name="a phosphatidyl-N-dimethylethanolamine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H16NO8PR2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: C[NH+](C)CCOP([O-])(=O)OCC(COC(*)=O)OC(*)=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_Apo__45__Propionyl__45__CoA__45__CO2__45__ligases_c" id="M_Apo__45__Propionyl__45__CoA__45__CO2__45__ligases_c" name="apo-[propionyl-CoA:carbon-dioxide ligase (ADP-forming)]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Apo__45__3__45__methylcrotonoyl__45__CoA__45__carbon__45__dioxide_c" id="M_Apo__45__3__45__methylcrotonoyl__45__CoA__45__carbon__45__dioxide_c" name="an apo-[3-methylcrotonoyl-CoA:carbon-dioxide ligase (ADP-forming)]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H13N3O2R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_DNA__45__Adenines_c" id="M_DNA__45__Adenines_c" name="a DNA adenine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_DNA__45__6__45__Methyl__45__Amino__45__Purines_c" id="M_DNA__45__6__45__Methyl__45__Amino__45__Purines_c" name="DNA-6-Methyl-Amino-Purines" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/>
      <species metaid="M_3__45__methylcrotonoyl__45__CoA__45__carbon__45__dioxide_c" id="M_3__45__methylcrotonoyl__45__CoA__45__carbon__45__dioxide_c" name="a holo-[3-methylcrotonoyl-CoA:carbon-dioxide ligase (ADP-forming)]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H27N5O4R2S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_apo__45__Transcarboxylases_c" id="M_apo__45__Transcarboxylases_c" name="an apo-[methylmalonyl-CoA:pyruvate carboxytransferase]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_PANTETHEINE__45__P_c" id="M_PANTETHEINE__45__P_c" name="4&apos;-phosphopantetheine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C11H21N2O7PS">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 356.333</p>
            <p>smiles: CC(C)(COP([O-])([O-])=O)[C@@H](O)C(=O)NCCC(=O)NCCS</p>
            <p>inchikey: JDMUPRLRUUMCTL-VIFPVBQESA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_PANTETHEINE__45__P_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C11H23N2O7PS/c1-11(2,7-20-21(17,18)19)9(15)10(16)13-4-3-8(14)12-5-6-22/h9,15,22H,3-7H2,1-2H3,(H,12,14)(H,13,16)(H2,17,18,19)/p-2/t9-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_R__45__4__45__PHOSPHOPANTOTHENOYL__45__L__45__CYSTEINE_c" id="M_R__45__4__45__PHOSPHOPANTOTHENOYL__45__L__45__CYSTEINE_c" name="R-4&apos;-phosphopantothenoyl-L-cysteine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C12H20N2O9PS">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 399.336</p>
            <p>smiles: CC(C)(COP([O-])([O-])=O)[C@@H](O)C(=O)NCCC(=O)N[C@@H](CS)C([O-])=O</p>
            <p>inchikey: XQYALQVLCNHCFT-CBAPKCEASA-K</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_R__45__4__45__PHOSPHOPANTOTHENOYL__45__L__45__CYSTEINE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C12H23N2O9PS/c1-12(2,6-23-24(20,21)22)9(16)10(17)13-4-3-8(15)14-7(5-25)11(18)19/h7,9,16,25H,3-6H2,1-2H3,(H,13,17)(H,14,15)(H,18,19)(H2,20,21,22)/p-3/t7-,9-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Long__45__Chain__45__Fatty__45__Acids_c" id="M_Long__45__Chain__45__Fatty__45__Acids_c" name="a long-chain fatty acid" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CO2R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [O-]C([*])=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_CPD66__45__39_e" id="M_CPD66__45__39_e" name="a 2,3,4-saturated fatty acid" compartment="e" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H6O2R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [O-]C(=O)CCC[*]</p>
          </body>
        </notes>
      </species>
      <species metaid="M_Saturated__45__Fatty__45__Acyl__45__CoA_c" id="M_Saturated__45__Fatty__45__Acyl__45__CoA_c" name="a 2,3,4-saturated fatty acyl CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C25H37N7O17P3SR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12)[C@@H](O)C(=O)NCCC(=O)NCCSC(=O)CCC[*]</p>
          </body>
        </notes>
      </species>
      <species metaid="M_CPD__45__5881_c" id="M_CPD__45__5881_c" name="4&amp;alpha;-hydroxy-tetrahydrobiopterin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H15N5O4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 257.2465</p>
            <p>smiles: [H][C@@]1(CNC2=NC(N)=NC(=O)[C@]2(O)N1)C(O)C(C)O</p>
            <p>inchikey: KJKIEFUPAPPGBC-ATDKUNPGSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__5881_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C9H15N5O4/c1-3(15)5(16)4-2-11-6-9(18,14-4)7(17)13-8(10)12-6/h3-5,14-16,18H,2H2,1H3,(H3,10,11,12,13,17)/t3?,4-,5?,9+/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_BIOPTERIN_c" id="M_BIOPTERIN_c" name="7,8-dihydrobiopterin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N5O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 239.2312</p>
            <p>smiles: CC(O)C(O)C1=Nc2c(NC1)[nH]c(N)nc2=O</p>
            <p>inchikey: FEMXZDUTFRTWPE-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_BIOPTERIN_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C9H13N5O3/c1-3(15)6(16)4-2-11-7-5(12-4)8(17)14-9(10)13-7/h3,6,15-16H,2H2,1H3,(H4,10,11,13,14,17)"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_D__45__SEDOHEPTULOSE__45__7__45__P_c" id="M_D__45__SEDOHEPTULOSE__45__7__45__P_c" name="D-sedoheptulose 7-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C7H13O10P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 288.147</p>
            <p>smiles: OCC(=O)[C@@H](O)[C@H](O)[C@H](O)[C@H](O)COP([O-])([O-])=O</p>
            <p>inchikey: JDTUMPKOJBQPKX-GBNDHIKLSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_D__45__SEDOHEPTULOSE__45__7__45__P_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C7H15O10P/c8-1-3(9)5(11)7(13)6(12)4(10)2-17-18(14,15)16/h4-8,10-13H,1-2H2,(H2,14,15,16)/p-2/t4-,5-,6-,7+/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_GAP_c" id="M_GAP_c" name="D-glyceraldehyde 3-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H5O6P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 168.0431</p>
            <p>smiles: [H]C(=O)[C@H](O)COP([O-])([O-])=O</p>
            <p>inchikey: LXJXRIRHZLFYRP-VKHMYHEASA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_GAP_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C3H7O6P/c4-1-3(5)2-9-10(6,7)8/h1,3,5H,2H2,(H2,6,7,8)/p-2/t3-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_TRANS__45__D2__45__ENOYL__45__COA_c" id="M_TRANS__45__D2__45__ENOYL__45__COA_c" name="a trans-2-enoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C24H33N7O17P3SR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12)[C@@H](O)C(=O)NCCC(=O)NCCSC(=O)\C=C\[*]</p>
          </body>
        </notes>
      </species>
      <species metaid="M_TETRADEHYDROACYL__45__COA_c" id="M_TETRADEHYDROACYL__45__COA_c" name="a trans-2,trans-4-dienoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C26H35N7O17P3SR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12)[C@@H](O)C(=O)NCCC(=O)NCCSC(=O)\C=C\C=C\[*]</p>
          </body>
        </notes>
      </species>
      <species metaid="M_TREHALOSE_c" id="M_TREHALOSE_c" name="&amp;alpha;,&amp;alpha;-trehalose" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H22O11">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 342.2965</p>
            <p>smiles: OC[C@H]1O[C@H](O[C@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O)[C@H](O)[C@@H](O)[C@@H]1O</p>
            <p>inchikey: HDTRYLNUVZCQOY-LIZSDCNHSA-N</p>
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        <annotation>
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            <rdf:Description rdf:about="#M_TREHALOSE_c">
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              </bqbiol:isVersionOf>
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      <species metaid="M_GLC_c" id="M_GLC_c" name="&amp;beta;-D-glucopyranose" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 180.1559</p>
            <p>smiles: OC[C@H]1O[C@@H](O)[C@H](O)[C@@H](O)[C@@H]1O</p>
            <p>inchikey: WQZGKKKJIJFFOK-VFUOTHLCSA-N</p>
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          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_GLC_c">
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      <species metaid="M_ALPHA__45__GLUCOSE_c" id="M_ALPHA__45__GLUCOSE_c" name="&amp;alpha;-D-glucopyranose" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 180.1559</p>
            <p>smiles: OC[C@H]1O[C@H](O)[C@H](O)[C@@H](O)[C@@H]1O</p>
            <p>inchikey: WQZGKKKJIJFFOK-DVKNGEFBSA-N</p>
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        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_ALPHA__45__GLUCOSE_c">
              <bqbiol:isVersionOf>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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      </species>
      <species metaid="M_EIF5A__45__HYPUSINE_c" id="M_EIF5A__45__HYPUSINE_c" name="an [eIF5A]-hypusine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_DNA__45__With__45__Pyrimidine__45__Dimers_c" id="M_DNA__45__With__45__Pyrimidine__45__Dimers_c" name="a DNA containing a pyrimidine dimer" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_DNA__45__Adjacent__45__Pyrimidines_c" id="M_DNA__45__Adjacent__45__Pyrimidines_c" name="DNA-Adjacent-Pyrimidines" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_DEPHOSPHO__45__COA_c" id="M_DEPHOSPHO__45__COA_c" name="3&apos;-dephospho-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H33N7O13P2S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 685.539</p>
            <p>smiles: CC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n1cnc2c(N)ncnc12)[C@@H](O)C(=O)NCCC(=O)NCCS</p>
            <p>inchikey: KDTSHFARGAKYJN-IBOSZNHHSA-L</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_DEPHOSPHO__45__COA_c">
              <bqbiol:isVersionOf>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_DETHIOBIOTIN_c" id="M_DETHIOBIOTIN_c" name="dethiobiotin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H17N2O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 213.2541</p>
            <p>smiles: CC1NC(=O)NC1CCCCCC([O-])=O</p>
            <p>inchikey: AUTOLBMXDDTRRT-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_DETHIOBIOTIN_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
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      </species>
      <species metaid="M_CPD__45__17621_c" id="M_CPD__45__17621_c" name="16-hydroxypalmitoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H62N7O18P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1017.913</p>
            <p>smiles: CC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12)[C@@H](O)C(=O)NCCC(=O)NCCSC(=O)CCCCCCCCCCCCCCCO</p>
            <p>inchikey: ROZGNNDROQHXPF-BBECNAHFSA-J</p>
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        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__17621_c">
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              </bqbiol:isVersionOf>
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      <species metaid="M_16__45__HYDROXYPALMITATE_c" id="M_16__45__HYDROXYPALMITATE_c" name="16-hydroxypalmitate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H31O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 271.4161</p>
            <p>smiles: OCCCCCCCCCCCCCCCC([O-])=O</p>
            <p>inchikey: UGAGPNKCDRTDHP-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_16__45__HYDROXYPALMITATE_c">
              <bqbiol:isVersionOf>
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      </species>
      <species metaid="M_LAUROYLCOA__45__CPD_c" id="M_LAUROYLCOA__45__CPD_c" name="lauroyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H54N7O17P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 945.807</p>
            <p>smiles: CCCCCCCCCCCC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: YMCXGHLSVALICC-GMHMEAMDSA-J</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_LAUROYLCOA__45__CPD_c">
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      <species metaid="M_DODECANOATE_c" id="M_DODECANOATE_c" name="laurate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H23O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 199.3104</p>
            <p>smiles: CCCCCCCCCCCC([O-])=O</p>
            <p>inchikey: POULHZVOKOAJMA-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_DODECANOATE_c">
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                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C12H24O2/c1-2-3-4-5-6-7-8-9-10-11-12(13)14/h2-11H2,1H3,(H,13,14)/p-1"/>
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      </species>
      <species metaid="M_CPD__45__17640_c" id="M_CPD__45__17640_c" name="18-hydroxystearate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H35O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 299.4692</p>
            <p>smiles: OCCCCCCCCCCCCCCCCCC([O-])=O</p>
            <p>inchikey: VLHZUYUOEGBBJB-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_CPD__45__17640_c">
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      </species>
      <species metaid="M_CPD__45__17641_c" id="M_CPD__45__17641_c" name="18-hydroxystearoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H66N7O18P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1045.966</p>
            <p>smiles: CC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12)[C@@H](O)C(=O)NCCC(=O)NCCSC(=O)CCCCCCCCCCCCCCCCCO</p>
            <p>inchikey: WMNWNRKMANJLHY-LFZQUHGESA-J</p>
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        </notes>
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        <notes>
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            <p>mass: 1043.95</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 297.4534</p>
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            <p>inchikey: LQUHZVLTTWMBTO-UPHRSURJSA-M</p>
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          <body xmlns="http://www.w3.org/1999/xhtml"/>
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        <notes>
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            <p>mass: 1023.919</p>
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        <notes>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 384.6377</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: O[C@H]1C[C@H]([*])O[C@@H]1COP([O-])(=O)OP([O-])(=O)OP([O-])([O-])=O</p>
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          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      <species metaid="M_CPD__45__316_c" id="M_CPD__45__316_c" name="reduced riboflavin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H22N4O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 378.3798</p>
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            <p>mass: 375.3565</p>
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            <p>mass: 299.1729</p>
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            <p>mass: 949.668</p>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Oxidized__45__CycA1__45__cytochromes_e" id="M_Oxidized__45__CycA1__45__cytochromes_e" name="an oxidized CycA1 cytochrome" compartment="e" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_DIAMINO__45__OH__45__PHOSPHORIBOSYLAMINO__45__PYR_c" id="M_DIAMINO__45__OH__45__PHOSPHORIBOSYLAMINO__45__PYR_c" name="2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H14N5O8P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 351.211</p>
            <p>smiles: Nc1nc(O)c(N)c(N[C@@H]2O[C@H](COP([O-])([O-])=O)[C@@H](O)[C@H]2O)n1</p>
            <p>inchikey: OCLCLRXKNJCOJD-UMMCILCDSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_DIAMINO__45__OH__45__PHOSPHORIBOSYLAMINO__45__PYR_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C9H16N5O8P/c10-3-6(13-9(11)14-7(3)17)12-8-5(16)4(15)2(22-8)1-21-23(18,19)20/h2,4-5,8,15-16H,1,10H2,(H2,18,19,20)(H4,11,12,13,14,17)/p-2/t2-,4-,5-,8-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__602_c" id="M_CPD__45__602_c" name="5-amino-6-(5-phospho-D-ribosylamino)uracil" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H13N4O9P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 352.1958</p>
            <p>smiles: Nc1c(N[C@@H]2O[C@H](COP([O-])([O-])=O)[C@@H](O)[C@H]2O)[nH]c(=O)[nH]c1=O</p>
            <p>inchikey: LZEXYCAGPMYXLX-UMMCILCDSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__602_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C9H15N4O9P/c10-3-6(12-9(17)13-7(3)16)11-8-5(15)4(14)2(22-8)1-21-23(18,19)20/h2,4-5,8,14-15H,1,10H2,(H2,18,19,20)(H3,11,12,13,16,17)/p-2/t2-,4-,5-,8-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Reduced__45__CycA1__45__cytochromes_e" id="M_Reduced__45__CycA1__45__cytochromes_e" name="a reduced CycA1 cytochrome" compartment="e" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_1__45__CHLORO__45__24__45__DINITROBENZENE_c" id="M_1__45__CHLORO__45__24__45__DINITROBENZENE_c" name="1-chloro-2,4-dinitrobenzene" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H3ClN2O4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 202.552</p>
            <p>smiles: [O-][N+](=O)c1ccc(Cl)c(c1)[N+]([O-])=O</p>
            <p>inchikey: VYZAHLCBVHPDDF-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_1__45__CHLORO__45__24__45__DINITROBENZENE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C6H3ClN2O4/c7-5-2-1-4(8(10)11)3-6(5)9(12)13/h1-3H"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__1086_c" id="M_CPD__45__1086_c" name="5-amino-6-(5-phospho-D-ribitylamino)uracil" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H15N4O9P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 354.2117</p>
            <p>smiles: Nc1c(NC[C@H](O)[C@H](O)[C@H](O)COP([O-])([O-])=O)[nH]c(=O)[nH]c1=O</p>
            <p>inchikey: RQRINYISXYAZKL-RPDRRWSUSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__1086_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C9H17N4O9P/c10-5-7(12-9(18)13-8(5)17)11-1-3(14)6(16)4(15)2-22-23(19,20)21/h3-4,6,14-16H,1-2,10H2,(H2,19,20,21)(H3,11,12,13,17,18)/p-2/t3-,4+,6-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Persulfurated__45__L__45__cysteine__45__desulfurases_c" id="M_Persulfurated__45__L__45__cysteine__45__desulfurases_c" name="an S-sulfanyl-[L-cysteine desulfurase]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="SR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CYS_c" id="M_CYS_c" name="L-cysteine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 121.158</p>
            <p>smiles: [NH3+][C@@H](CS)C([O-])=O</p>
            <p>inchikey: XUJNEKJLAYXESH-REOHCLBHSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CYS_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C3H7NO2S/c4-2(1-7)3(5)6/h2,7H,1,4H2,(H,5,6)/t2-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_L__45__Cysteine__45__Desulfurases_c" id="M_L__45__Cysteine__45__Desulfurases_c" name="an [L-cysteine desulfurase]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Holo__45__EntF_c" id="M_Holo__45__EntF_c" name="a holo-[EntF peptidyl-carrier protein]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Apo__45__EntF_c" id="M_Apo__45__EntF_c" name="an apo-[EntF peptidyl-carrier protein]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_DIHYDRONEOPTERIN__45__P3_c" id="M_DIHYDRONEOPTERIN__45__P3_c" name="7,8-dihydroneopterin 3&apos;-triphosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C9H12N5O13P3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 491.1408</p>
            <p>smiles: Nc1nc2NCC(=Nc2c(=O)[nH]1)[C@H](O)[C@H](O)COP([O-])(=O)OP([O-])(=O)OP([O-])([O-])=O</p>
            <p>inchikey: DGGUVLXVLHAAGT-XINAWCOVSA-J</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_DIHYDRONEOPTERIN__45__P3_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C9H16N5O13P3/c10-9-13-7-5(8(17)14-9)12-3(1-11-7)6(16)4(15)2-25-29(21,22)27-30(23,24)26-28(18,19)20/h4,6,15-16H,1-2H2,(H,21,22)(H,23,24)(H2,18,19,20)(H4,10,11,13,14,17)/p-4/t4-,6+/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_GTP_c" id="M_GTP_c" name="GTP" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O14P3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 519.1509</p>
            <p>smiles: Nc1nc2n(cnc2c(=O)[nH]1)[C@@H]1O[C@H](COP([O-])(=O)OP([O-])(=O)OP([O-])([O-])=O)[C@@H](O)[C@H]1O</p>
            <p>inchikey: XKMLYUALXHKNFT-UUOKFMHZSA-J</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_GTP_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C10H16N5O14P3/c11-10-13-7-4(8(18)14-10)12-2-15(7)9-6(17)5(16)3(27-9)1-26-31(22,23)29-32(24,25)28-30(19,20)21/h2-3,5-6,9,16-17H,1H2,(H,22,23)(H,24,25)(H2,19,20,21)(H3,11,13,14,18)/p-4/t3-,5-,6-,9-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__15318_c" id="M_CPD__45__15318_c" name="&amp;alpha;-D-ribose 5-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O8P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 228.095</p>
            <p>smiles: O[C@H]1O[C@H](COP([O-])([O-])=O)[C@@H](O)[C@H]1O</p>
            <p>inchikey: KTVPXOYAKDPRHY-AIHAYLRMSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__15318_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C5H11O8P/c6-3-2(1-12-14(9,10)11)13-5(8)4(3)7/h2-8H,1H2,(H2,9,10,11)/p-2/t2-,3-,4-,5+/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_MALTOSE_c" id="M_MALTOSE_c" name="maltose" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H22O11">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 342.2965</p>
            <p>smiles: OC[C@H]1O[C@H](O[C@H]2[C@H](O)[C@@H](O)C(O)O[C@@H]2CO)[C@H](O)[C@@H](O)[C@@H]1O</p>
            <p>inchikey: GUBGYTABKSRVRQ-PICCSMPSSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_MALTOSE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C12H22O11/c13-1-3-5(15)6(16)9(19)12(22-3)23-10-4(2-14)21-11(20)8(18)7(10)17/h3-20H,1-2H2/t3-,4-,5-,6+,7-,8-,9-,10-,11?,12-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__10330_c" id="M_CPD__45__10330_c" name="&amp;alpha;-D-ribofuranose" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 150.1299</p>
            <p>smiles: OC[C@H]1O[C@H](O)[C@H](O)[C@@H]1O</p>
            <p>inchikey: HMFHBZSHGGEWLO-AIHAYLRMSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__10330_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C5H10O5/c6-1-2-3(7)4(8)5(9)10-2/h2-9H,1H2/t2-,3-,4-,5+/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Deoxy__45__Ribonucleoside__45__Diphosphates_c" id="M_Deoxy__45__Ribonucleoside__45__Diphosphates_c" name="a 2&apos;-deoxyribonucleoside 5&apos;-diphosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C5H8O9P2R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: O[C@H]1C[C@H]([*])O[C@@H]1COP([O-])(=O)OP([O-])([O-])=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_Ribonucleoside__45__Diphosphates_c" id="M_Ribonucleoside__45__Diphosphates_c" name="a ribonucleoside diphosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_ARACHIDONIC_ACID_c" id="M_ARACHIDONIC_ACID_c" name="arachidonate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 303.4595</p>
            <p>smiles: CCCCC\C=C/C\C=C/C\C=C/C\C=C/CCCC([O-])=O</p>
            <p>inchikey: YZXBAPSDXZZRGB-DOFZRALJSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_ARACHIDONIC_ACID_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C20H32O2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20(21)22/h6-7,9-10,12-13,15-16H,2-5,8,11,14,17-19H2,1H3,(H,21,22)/p-1/b7-6-,10-9-,13-12-,16-15-"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_APS_c" id="M_APS_c" name="adenosine 5&apos;-phosphosulfate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O10PS">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 425.27</p>
            <p>smiles: Nc1ncnc2n(cnc12)[C@@H]1O[C@H](COP([O-])(=O)OS([O-])(=O)=O)[C@@H](O)[C@H]1O</p>
            <p>inchikey: IRLPACMLTUPBCL-KQYNXXCUSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_APS_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C10H14N5O10PS/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(24-10)1-23-26(18,19)25-27(20,21)22/h2-4,6-7,10,16-17H,1H2,(H,18,19)(H2,11,12,13)(H,20,21,22)/p-2/t4-,6-,7-,10-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_SULFATE_c" id="M_SULFATE_c" name="sulfate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O4S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 96.064</p>
            <p>smiles: [O-]S([O-])(=O)=O</p>
            <p>inchikey: QAOWNCQODCNURD-UHFFFAOYSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_SULFATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/H2O4S/c1-5(2,3)4/h(H2,1,2,3,4)/p-2"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_SO3_c" id="M_SO3_c" name="sulfite" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 80.064</p>
            <p>smiles: [O-]S([O-])=O</p>
            <p>inchikey: LSNNMFCWUKXFEE-UHFFFAOYSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_SO3_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/H2O3S/c1-4(2)3/h(H2,1,2,3)/p-2"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Nucleoside__45__Monophosphates_c" id="M_Nucleoside__45__Monophosphates_c" name="a nucleoside 5&apos;-monophosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H8O7PR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: O[C@@H]1[C@H](O)[C@@H](COP([O-])([O-])=O)O[C@H]1[*]</p>
          </body>
        </notes>
      </species>
      <species metaid="M_DNA__45__N_c" id="M_DNA__45__N_c" name="DNAn" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Single__45__Stranded__45__DNAs_c" id="M_Single__45__Stranded__45__DNAs_c" name="a single stranded DNA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Phospholipids_c" id="M_Phospholipids_c" name="a phospholipid" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H5O8PR3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Short__45__RNA__45__Fragments_c" id="M_Short__45__RNA__45__Fragments_c" name="a short RNA Segment" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_MALEATE_c" id="M_MALEATE_c" name="maleate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H2O4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 114.0574</p>
            <p>smiles: [O-]C(=O)\C=C/C([O-])=O</p>
            <p>inchikey: VZCYOOQTPOCHFL-UPHRSURJSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_MALEATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C4H4O4/c5-3(6)1-2-4(7)8/h1-2H,(H,5,6)(H,7,8)/p-2/b2-1-"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Phospholipids_e" id="M_Phospholipids_e" name="a phospholipid" compartment="e" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H5O8PR3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Carboxybiotin__45__BCCP_c" id="M_Carboxybiotin__45__BCCP_c" name="a carboxylated-biotinylated [BCCP dimer]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_MALEAMATE_c" id="M_MALEAMATE_c" name="maleamate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H4NO3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 114.08</p>
            <p>smiles: NC(=O)\C=C/C([O-])=O</p>
            <p>inchikey: FSQQTNAZHBEJLS-UPHRSURJSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_MALEAMATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C4H5NO3/c5-3(6)1-2-4(7)8/h1-2H,(H2,5,6)(H,7,8)/p-1/b2-1-"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_BCCP__45__dimers_c" id="M_BCCP__45__dimers_c" name="a biotinylated [BCCP dimer]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD1F__45__137_c" id="M_CPD1F__45__137_c" name="gibberellin A4" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H23O5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 331.3835</p>
            <p>smiles: [H][C@@]12C[C@]3(CC1=C)[C@@H](C([O-])=O)[C@]1([H])[C@@]4(C)[C@@H](O)CC[C@@]1(OC4=O)[C@]3([H])CC2</p>
            <p>inchikey: RSQSQJNRHICNNH-NFMPGMCNSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD1F__45__137_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C19H24O5/c1-9-7-18-8-10(9)3-4-11(18)19-6-5-12(20)17(2,16(23)24-19)14(19)13(18)15(21)22/h10-14,20H,1,3-8H2,2H3,(H,21,22)/p-1/t10-,11-,12+,13-,14-,17-,18+,19-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__11592_c" id="M_CPD__45__11592_c" name="2-methylthio-N6-dimethylallyladenosine37 in tRNA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H21N5O10P2SR2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CSc1nc(NCC=C(C)C)c2ncn([C@@H]3O[C@H](COP([O-])(=O)O*)[C@@H](OP([O-])(=O)O*)[C@H]3O)c2n1</p>
          </body>
        </notes>
      </species>
      <species metaid="M_CPD__45__6224_c" id="M_CPD__45__6224_c" name="gibberellin A34" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H23O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 347.3829</p>
            <p>smiles: [H][C@@]12C[C@]3(CC1=C)[C@@H](C([O-])=O)[C@]1([H])[C@@]4(C)[C@@H](O)[C@@H](O)C[C@@]1(OC4=O)[C@]3([H])CC2</p>
            <p>inchikey: IGZIQAJJXGRAJF-TXZPEUJSSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__6224_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C19H24O6/c1-8-5-18-6-9(8)3-4-11(18)19-7-10(20)14(21)17(2,16(24)25-19)13(19)12(18)15(22)23/h9-14,20-21H,1,3-7H2,2H3,(H,22,23)/p-1/t9-,10+,11-,12-,13-,14+,17+,18+,19-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CH33ADO_c" id="M_CH33ADO_c" name="5&apos;-deoxyadenosine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 251.2419</p>
            <p>smiles: C[C@H]1O[C@H]([C@H](O)[C@@H]1O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: XGYIMTFOTBMPFP-KQYNXXCUSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CH33ADO_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C10H13N5O3/c1-4-6(16)7(17)10(18-4)15-3-14-5-8(11)12-2-13-9(5)15/h2-4,6-7,10,16-17H,1H3,(H2,11,12,13)/t4-,6-,7-,10-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Kinesin__45__Microtubules__45__Complex_c" id="M_Kinesin__45__Microtubules__45__Complex_c" name="a kinesin-microtubules complex" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_5__45__L__45__GLUTAMYL__45__L__45__AMINO__45__ACID_c" id="M_5__45__L__45__GLUTAMYL__45__L__45__AMINO__45__ACID_c" name="an (&amp;gamma;-L-glutamyl)-L-amino acid" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H10N2O5R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [NH3+][C@@H](CCC(=O)N[C@@H](*)C([O-])=O)C([O-])=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_CYS__45__GLY_c" id="M_CYS__45__GLY_c" name="L-cysteinyl-glycine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10N2O3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 178.21</p>
            <p>smiles: [NH3+][C@@H](CS)C(=O)NCC([O-])=O</p>
            <p>inchikey: ZUKPVRWZDMRIEO-VKHMYHEASA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CYS__45__GLY_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C5H10N2O3S/c6-3(2-11)5(10)7-1-4(8)9/h3,11H,1-2,6H2,(H,7,10)(H,8,9)/t3-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_IDP_c" id="M_IDP_c" name="IDP" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H11N4O11P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 425.1637</p>
            <p>smiles: O[C@@H]1[C@@H](COP([O-])(=O)OP([O-])([O-])=O)O[C@H]([C@@H]1O)n1cnc2c1nc[nH]c2=O</p>
            <p>inchikey: JPXZQMKKFWMMGK-KQYNXXCUSA-K</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_IDP_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C10H14N4O11P2/c15-6-4(1-23-27(21,22)25-26(18,19)20)24-10(7(6)16)14-3-13-5-8(14)11-2-12-9(5)17/h2-4,6-7,10,15-16H,1H2,(H,21,22)(H,11,12,17)(H2,18,19,20)/p-3/t4-,6-,7-,10-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_S__45__Substituted__45__L__45__Cysteines_c" id="M_S__45__Substituted__45__L__45__Cysteines_c" name="an L-cysteine-S-conjugate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6NO2SR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [NH3+][C@@H](CS[*])C([O-])=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_L__45__DIHYDROXY__45__PHENYLALANINE_c" id="M_L__45__DIHYDROXY__45__PHENYLALANINE_c" name="L-dopa" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NO4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 197.1879</p>
            <p>smiles: [NH3+][C@@H](Cc1ccc(O)c(O)c1)C([O-])=O</p>
            <p>inchikey: WTDRDQBEARUVNC-LURJTMIESA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_L__45__DIHYDROXY__45__PHENYLALANINE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C9H11NO4/c10-6(9(13)14)3-5-1-2-7(11)8(12)4-5/h1-2,4,6,11-12H,3,10H2,(H,13,14)/t6-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_DOPAQUINONE_c" id="M_DOPAQUINONE_c" name="dopaquinone" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H9NO4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 195.1721</p>
            <p>smiles: [NH3+][C@@H](CC1=CC(=O)C(=O)C=C1)C([O-])=O</p>
            <p>inchikey: AHMIDUVKSGCHAU-LURJTMIESA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_DOPAQUINONE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C9H9NO4/c10-6(9(13)14)3-5-1-2-7(11)8(12)4-5/h1-2,4,6H,3,10H2,(H,13,14)/t6-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Red__45__NADPH__45__Hemoprotein__45__Reductases_c" id="M_Red__45__NADPH__45__Hemoprotein__45__Reductases_c" name="a reduced [NADPH-hemoprotein reductase]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_D__45__mannopyranose_c" id="M_D__45__mannopyranose_c" name="D-mannopyranose" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 180.1559</p>
            <p>smiles: OC[C@H]1OC(O)[C@@H](O)[C@@H](O)[C@@H]1O</p>
            <p>inchikey: WQZGKKKJIJFFOK-QTVWNMPRSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_D__45__mannopyranose_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3-,4+,5+,6?/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__9446_c" id="M_CPD__45__9446_c" name="1,5-anhydro-D-mannitol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 164.1565</p>
            <p>smiles: OC[C@H]1OC[C@@H](O)[C@@H](O)[C@@H]1O</p>
            <p>inchikey: MPCAJMNYNOGXPB-KVTDHHQDSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__9446_c">
              <bqbiol:isVersionOf>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Ox__45__NADPH__45__Hemoprotein__45__Reductases_c" id="M_Ox__45__NADPH__45__Hemoprotein__45__Reductases_c" name="an oxidized [NADPH-hemoprotein reductase]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_L__45__CYSTATHIONINE_c" id="M_L__45__CYSTATHIONINE_c" name="L-cystathionine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H14N2O4S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 222.262</p>
            <p>smiles: [NH3+][C@@H](CCSC[C@H]([NH3+])C([O-])=O)C([O-])=O</p>
            <p>inchikey: ILRYLPWNYFXEMH-WHFBIAKZSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_L__45__CYSTATHIONINE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C7H14N2O4S/c8-4(6(10)11)1-2-14-3-5(9)7(12)13/h4-5H,1-3,8-9H2,(H,10,11)(H,12,13)/t4-,5-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_ACYL__45__COA_c" id="M_ACYL__45__COA_c" name="an acyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C22H31N7O17P3SR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12)[C@@H](O)C(=O)NCCC(=O)NCCSC([*])=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_HOMO__45__SER_c" id="M_HOMO__45__SER_c" name="L-homoserine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 119.1192</p>
            <p>smiles: [NH3+][C@@H](CCO)C([O-])=O</p>
            <p>inchikey: UKAUYVFTDYCKQA-VKHMYHEASA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_HOMO__45__SER_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C4H9NO3/c5-3(1-2-6)4(7)8/h3,6H,1-2,5H2,(H,7,8)/t3-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_2__45__Acyl__45__sn__45__glycerol__45__3__45__phosphates_c" id="M_2__45__Acyl__45__sn__45__glycerol__45__3__45__phosphates_c" name="a 2-acyl-sn-glycerol 3-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H6O7PR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: OC[C@H](COP([O-])([O-])=O)OC([*])=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_2__45__D__45__THREO__45__HYDROXY__45__3__45__CARBOXY__45__ISOCAPROATE_c" id="M_2__45__D__45__THREO__45__HYDROXY__45__3__45__CARBOXY__45__ISOCAPROATE_c" name="(2R,3S)-3-isopropylmalate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C7H10O5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 174.1524</p>
            <p>smiles: CC(C)[C@@H]([C@@H](O)C([O-])=O)C([O-])=O</p>
            <p>inchikey: RNQHMTFBUSSBJQ-CRCLSJGQSA-L</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_2__45__D__45__THREO__45__HYDROXY__45__3__45__CARBOXY__45__ISOCAPROATE_c">
              <bqbiol:isVersionOf>
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                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C7H12O5/c1-3(2)4(6(9)10)5(8)7(11)12/h3-5,8H,1-2H3,(H,9,10)(H,11,12)/p-2/t4-,5+/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_FARNESYL__45__PP_c" id="M_FARNESYL__45__PP_c" name="(2E,6E)-farnesyl diphosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C15H25O7P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 379.304</p>
            <p>smiles: CC(C)=CCC\C(C)=C\CC\C(C)=C\COP([O-])(=O)OP([O-])([O-])=O</p>
            <p>inchikey: VWFJDQUYCIWHTN-YFVJMOTDSA-K</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_FARNESYL__45__PP_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C15H28O7P2/c1-13(2)7-5-8-14(3)9-6-10-15(4)11-12-21-24(19,20)22-23(16,17)18/h7,9,11H,5-6,8,10,12H2,1-4H3,(H,19,20)(H2,16,17,18)/p-3/b14-9+,15-11+"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_SER_c" id="M_SER_c" name="L-serine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 105.0926</p>
            <p>smiles: [NH3+][C@@H](CO)C([O-])=O</p>
            <p>inchikey: MTCFGRXMJLQNBG-REOHCLBHSA-N</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_SER_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C3H7NO3/c4-2(1-5)3(6)7/h2,5H,1,4H2,(H,6,7)/t2-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_HYPOTAURINE_c" id="M_HYPOTAURINE_c" name="hypotaurine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H7NO2S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 109.147</p>
            <p>smiles: [NH3+]CCS([O-])=O</p>
            <p>inchikey: VVIUBCNYACGLLV-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_HYPOTAURINE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C2H7NO2S/c3-1-2-6(4)5/h1-3H2,(H,4,5)"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__239_c" id="M_CPD__45__239_c" name="cysteamine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C2H8NS">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 78.156</p>
            <p>smiles: [NH3+]CCS</p>
            <p>inchikey: UFULAYFCSOUIOV-UHFFFAOYSA-O</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__239_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C2H7NS/c3-1-2-4/h4H,1-3H2/p+1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_DPG_c" id="M_DPG_c" name="1,3-bisphospho-D-glycerate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C3H4O10P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 262.0076</p>
            <p>smiles: O[C@H](COP([O-])([O-])=O)C(=O)OP([O-])([O-])=O</p>
            <p>inchikey: LJQLQCAXBUHEAZ-UWTATZPHSA-J</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_DPG_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C3H8O10P2/c4-2(1-12-14(6,7)8)3(5)13-15(9,10)11/h2,4H,1H2,(H2,6,7,8)(H2,9,10,11)/p-4/t2-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_ISOBUTYRYL__45__COA_c" id="M_ISOBUTYRYL__45__COA_c" name="isobutanoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C25H38N7O17P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 833.594</p>
            <p>smiles: CC(C)C(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: AEWHYWSPVRZHCT-NDZSKPAWSA-J</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_ISOBUTYRYL__45__COA_c">
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__12179_c" id="M_CPD__45__12179_c" name="methylmalonate semialdehyde" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H5O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 101.0812</p>
            <p>smiles: CC(C=O)C([O-])=O</p>
            <p>inchikey: VOKUMXABRRXHAR-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__12179_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C4H6O3/c1-3(2-5)4(6)7/h2-3H,1H3,(H,6,7)/p-1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_BETAINE_c" id="M_BETAINE_c" name="glycine betaine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 117.1463</p>
            <p>smiles: C[N+](C)(C)CC([O-])=O</p>
            <p>inchikey: KWIUHFFTVRNATP-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_BETAINE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C5H11NO2/c1-6(2,3)4-5(7)8/h4H2,1-3H3"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__468_c" id="M_CPD__45__468_c" name="L-2-aminoadipate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H10NO4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 160.1484</p>
            <p>smiles: [NH3+][C@@H](CCCC([O-])=O)C([O-])=O</p>
            <p>inchikey: OYIFNHCXNCRBQI-BYPYZUCNSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__468_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C6H11NO4/c7-4(6(10)11)2-1-3-5(8)9/h4H,1-3,7H2,(H,8,9)(H,10,11)/p-1/t4-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_ALLYSINE_c" id="M_ALLYSINE_c" name="(S)-2-amino-6-oxohexanoate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11NO3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 145.1564</p>
            <p>smiles: [H]C(=O)CCC[C@H]([NH3+])C([O-])=O</p>
            <p>inchikey: GFXYTQPNNXGICT-YFKPBYRVSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_ALLYSINE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C6H11NO3/c7-5(6(9)10)3-1-2-4-8/h4-5H,1-3,7H2,(H,9,10)/t5-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_BENZOATE_c" id="M_BENZOATE_c" name="benzoate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H5O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 121.1139</p>
            <p>smiles: [O-]C(=O)c1ccccc1</p>
            <p>inchikey: WPYMKLBDIGXBTP-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_BENZOATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C7H6O2/c8-7(9)6-4-2-1-3-5-6/h1-5H,(H,8,9)/p-1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_GDP__45__TP_c" id="M_GDP__45__TP_c" name="pppGpp" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C10H12N5O20P5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 677.0959</p>
            <p>smiles: Nc1nc2n(cnc2c(=O)[nH]1)[C@@H]1O[C@H](COP([O-])(=O)OP([O-])(=O)OP([O-])([O-])=O)[C@@H](OP([O-])(=O)OP(O)([O-])=O)[C@H]1O</p>
            <p>inchikey: KCPMACXZAITQAX-UUOKFMHZSA-H</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_GDP__45__TP_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C10H18N5O20P5/c11-10-13-7-4(8(17)14-10)12-2-15(7)9-5(16)6(32-39(26,27)33-36(18,19)20)3(31-9)1-30-38(24,25)35-40(28,29)34-37(21,22)23/h2-3,5-6,9,16H,1H2,(H,24,25)(H,26,27)(H,28,29)(H2,18,19,20)(H2,21,22,23)(H3,11,13,14,17)/p-6/t3-,5-,6-,9-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_4__45__GUANIDO__45__BUTYRAMIDE_c" id="M_4__45__GUANIDO__45__BUTYRAMIDE_c" name="4-guanidinobutyramide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H13N4O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 145.1824</p>
            <p>smiles: NC(=O)CCCNC(N)=[NH2+]</p>
            <p>inchikey: YHVFECVVGNXFKO-UHFFFAOYSA-O</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_4__45__GUANIDO__45__BUTYRAMIDE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C5H12N4O/c6-4(10)2-1-3-9-5(7)8/h1-3H2,(H2,6,10)(H4,7,8,9)/p+1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__592_c" id="M_CPD__45__592_c" name="4-guanidinobutanoate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11N3O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 145.1597</p>
            <p>smiles: NC(=[NH2+])NCCCC([O-])=O</p>
            <p>inchikey: TUHVEAJXIMEOSA-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__592_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C5H11N3O2/c6-5(7)8-3-1-2-4(9)10/h1-3H2,(H,9,10)(H4,6,7,8)"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_4__45__AMINO__45__BUTYRATE_c" id="M_4__45__AMINO__45__BUTYRATE_c" name="4-aminobutanoate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 103.1198</p>
            <p>smiles: [NH3+]CCCC([O-])=O</p>
            <p>inchikey: BTCSSZJGUNDROE-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_4__45__AMINO__45__BUTYRATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C4H9NO2/c5-3-1-2-4(6)7/h1-3,5H2,(H,6,7)"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_UREA_c" id="M_UREA_c" name="urea" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH4N2O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 60.0553</p>
            <p>smiles: NC(N)=O</p>
            <p>inchikey: XSQUKJJJFZCRTK-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_UREA_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/CH4N2O/c2-1(3)4/h(H4,2,3,4)"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_GMP_c" id="M_GMP_c" name="GMP" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O8P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 361.2058</p>
            <p>smiles: Nc1nc2n(cnc2c(=O)[nH]1)[C@@H]1O[C@H](COP([O-])([O-])=O)[C@@H](O)[C@H]1O</p>
            <p>inchikey: RQFCJASXJCIDSX-UUOKFMHZSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_GMP_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C10H14N5O8P/c11-10-13-7-4(8(18)14-10)12-2-15(7)9-6(17)5(16)3(23-9)1-22-24(19,20)21/h2-3,5-6,9,16-17H,1H2,(H2,19,20,21)(H3,11,13,14,18)/p-2/t3-,5-,6-,9-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_1__45__2__45__Diglycerides_c" id="M_1__45__2__45__Diglycerides_c" name="a 1,2-diglyceride" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6O5R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: OCC(COC(*)=O)OC(*)=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_CPD__45__409_c" id="M_CPD__45__409_c" name="a 2-monoglyceride" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7O4R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: OCC(CO)OC([*])=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_CPD0__45__2113_c" id="M_CPD0__45__2113_c" name="1-stearoyl-sn-glycerol 3-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H41O7P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 436.5209</p>
            <p>smiles: CCCCCCCCCCCCCCCCCC(=O)OC[C@@H](O)COP([O-])([O-])=O</p>
            <p>inchikey: LAYXSTYJRSVXIH-HXUWFJFHSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD0__45__2113_c">
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Stearoyl__45__ACPs_c" id="M_Stearoyl__45__ACPs_c" name="a stearoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H35ORS">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__17273_c" id="M_CPD__45__17273_c" name="1-stearoyl-2-palmitoyl-sn-glycerol 3-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C37H71O8P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 674.9297</p>
            <p>smiles: CCCCCCCCCCCCCCCCCC(=O)OC[C@H](COP([O-])([O-])=O)OC(=O)CCCCCCCCCCCCCCC</p>
            <p>inchikey: USQMHZSVXZAKAI-PGUFJCEWSA-L</p>
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        </notes>
        <annotation>
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              </bqbiol:isVersionOf>
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      </species>
      <species metaid="M_CPD__45__17272_c" id="M_CPD__45__17272_c" name="1-oleoyl-2-palmitoyl-glycerol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C37H70O5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 594.9487</p>
            <p>smiles: CCCCCCCCCCCCCCCC(=O)O[C@@H](CO)COC(=O)CCCCCCC\C=C/CCCCCCCC</p>
            <p>inchikey: DOZKMFVMCATMEH-OZKTZCCCSA-N</p>
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        </notes>
        <annotation>
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              </bqbiol:isVersionOf>
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        </annotation>
      </species>
      <species metaid="M_CPD__45__14553_c" id="M_CPD__45__14553_c" name="UDP-&amp;alpha;-D-galactose" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H22N2O17P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 564.287</p>
            <p>smiles: OC[C@H]1O[C@H](OP([O-])(=O)OP([O-])(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)n2ccc(=O)[nH]c2=O)[C@H](O)[C@@H](O)[C@H]1O</p>
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        </notes>
        <annotation>
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      <species metaid="M_CPD__45__2187_c" id="M_CPD__45__2187_c" name="1-18:1-2-16:0-monogalactosyldiacylglycerol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C43H80O10">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 757.0893</p>
            <p>smiles: CCCCCCCCCCCCCCCC(=O)O[C@@H](CO[C@@H]1O[C@H](CO)[C@H](O)[C@H](O)[C@H]1O)COC(=O)CCCCCCC\C=C/CCCCCCCC</p>
            <p>inchikey: JBZBYHKCRFIXBI-OTVPKONDSA-N</p>
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        </notes>
        <annotation>
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      <species metaid="M_CPD__45__504_c" id="M_CPD__45__504_c" name="a 1-monoglyceride" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_2__45__Palmitoyl__45__L__45__Phosphatidate_c" id="M_2__45__Palmitoyl__45__L__45__Phosphatidate_c" name="a 1-acyl-2-palmitoyl-sn-glycerol 3-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H36O8PR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CCCCCCCCCCCCCCCC(=O)O[C@H](COC([*])=O)COP([O-])([O-])=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_CPD__45__6972_c" id="M_CPD__45__6972_c" name="4-(2&apos;-carboxyphenyl)-4-oxobutyryl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C32H39N7O20P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 966.676</p>
            <p>smiles: CC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12)[C@@H](O)C(=O)NCCC(=O)NCCSC(=O)c1ccccc1C(=O)CCC([O-])=O</p>
            <p>inchikey: AVOVYFCDODUXLY-HSJNEKGZSA-I</p>
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        </notes>
        <annotation>
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      <species metaid="M_DIHYDROKAEMPFEROL__45__CMPD_c" id="M_DIHYDROKAEMPFEROL__45__CMPD_c" name="(+)-dihydrokaempferol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H12O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 288.2522</p>
            <p>smiles: O[C@@H]1[C@H](Oc2cc(O)cc(O)c2C1=O)c1ccc(O)cc1</p>
            <p>inchikey: PADQINQHPQKXNL-LSDHHAIUSA-N</p>
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        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_DIHYDROKAEMPFEROL__45__CMPD_c">
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      <species metaid="M_NARINGENIN__45__CMPD_c" id="M_NARINGENIN__45__CMPD_c" name="(2S)-naringenin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H12O5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 272.2528</p>
            <p>smiles: Oc1ccc(cc1)[C@@H]1CC(=O)c2c(O)cc(O)cc2O1</p>
            <p>inchikey: FTVWIRXFELQLPI-ZDUSSCGKSA-N</p>
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        </notes>
        <annotation>
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      <species metaid="M_P__45__COUMAROYL__45__COA_c" id="M_P__45__COUMAROYL__45__COA_c" name="4-coumaroyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C30H38N7O18P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 909.647</p>
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            <p>inchikey: DMZOKBALNZWDKI-MATMFAIHSA-J</p>
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      <species metaid="M_G3P_c" id="M_G3P_c" name="3-phospho-D-glycerate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C3H4O7P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 183.0351</p>
            <p>smiles: O[C@H](COP([O-])([O-])=O)C([O-])=O</p>
            <p>inchikey: OSJPPGNTCRNQQC-UWTATZPHSA-K</p>
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        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_G3P_c">
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      <species metaid="M_D__45__RIBULOSE__45__15__45__P2_c" id="M_D__45__RIBULOSE__45__15__45__P2_c" name="D-ribulose-1,5-bisphosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C5H8O11P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 306.0601</p>
            <p>smiles: O[C@H](COP([O-])([O-])=O)[C@@H](O)C(=O)COP([O-])([O-])=O</p>
            <p>inchikey: YAHZABJORDUQGO-NQXXGFSBSA-J</p>
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        </notes>
        <annotation>
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      <species metaid="M_APIGENIN_c" id="M_APIGENIN_c" name="2&apos;,4,4&apos;,6&apos;-tetrahydroxychalcone" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H4O4R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: Oc1cc(O)c(C([*])=O)c([O-])c1</p>
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        </notes>
      </species>
      <species metaid="M_RIBULOSE__45__5P_c" id="M_RIBULOSE__45__5P_c" name="D-ribulose 5-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O8P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 228.095</p>
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        <annotation>
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      </species>
      <species metaid="M_XYLULOSE__45__5__45__PHOSPHATE_c" id="M_XYLULOSE__45__5__45__PHOSPHATE_c" name="D-xylulose 5-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O8P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 228.095</p>
            <p>smiles: OCC(=O)[C@@H](O)[C@H](O)COP([O-])([O-])=O</p>
            <p>inchikey: FNZLKVNUWIIPSJ-RFZPGFLSSA-L</p>
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      <species metaid="M_Cyclic__45__Phosphate__45__Terminated__45__RNAs_c" id="M_Cyclic__45__Phosphate__45__Terminated__45__RNAs_c" name="an RNA terminal-2&apos;,3&apos;-cyclic-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      </species>
      <species metaid="M_3__45__Prime__45__Phosphate__45__Terminated__45__RNAs_c" id="M_3__45__Prime__45__Phosphate__45__Terminated__45__RNAs_c" name="an RNA 3&apos;-terminal-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__6262_c" id="M_CPD__45__6262_c" name="a [Cys-Gly]-S-conjugate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_ACETYLSERINE_c" id="M_ACETYLSERINE_c" name="O-acetyl-L-serine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 147.1293</p>
            <p>smiles: CC(=O)OC[C@H]([NH3+])C([O-])=O</p>
            <p>inchikey: VZXPDPZARILFQX-BYPYZUCNSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_ACETYLSERINE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C5H9NO4/c1-3(7)10-2-4(6)5(8)9/h4H,2,6H2,1H3,(H,8,9)/t4-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_SULFO__45__CYSTEINE_c" id="M_SULFO__45__CYSTEINE_c" name="S-sulfo-L-cysteine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H6NO5S2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 200.214</p>
            <p>smiles: [NH3+][C@@H](CSS([O-])(=O)=O)C([O-])=O</p>
            <p>inchikey: NOKPBJYHPHHWAN-REOHCLBHSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_SULFO__45__CYSTEINE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C3H7NO5S2/c4-2(3(5)6)1-10-11(7,8)9/h2H,1,4H2,(H,5,6)(H,7,8,9)/p-1/t2-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_S2O3_c" id="M_S2O3_c" name="thiosulfate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="HO3S2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 113.137</p>
            <p>smiles: [H]SS([O-])(=O)=O</p>
            <p>inchikey: DHCDFWKWKRSZHF-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_S2O3_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/H2O3S2/c1-5(2,3)4/h(H2,1,2,3,4)/p-1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_PAPS_c" id="M_PAPS_c" name="3&apos;-phosphoadenylyl-sulfate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H11N5O13P2S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 503.235</p>
            <p>smiles: Nc1ncnc2n(cnc12)[C@@H]1O[C@H](COP([O-])(=O)OS([O-])(=O)=O)[C@@H](OP([O-])([O-])=O)[C@H]1O</p>
            <p>inchikey: GACDQMDRPRGCTN-KQYNXXCUSA-J</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_PAPS_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C10H15N5O13P2S/c11-8-5-9(13-2-12-8)15(3-14-5)10-6(16)7(27-29(17,18)19)4(26-10)1-25-30(20,21)28-31(22,23)24/h2-4,6-7,10,16H,1H2,(H,20,21)(H2,11,12,13)(H2,17,18,19)(H,22,23,24)/p-4/t4-,6-,7-,10-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_ACET_c" id="M_ACET_c" name="acetate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H3O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 59.0446</p>
            <p>smiles: CC([O-])=O</p>
            <p>inchikey: QTBSBXVTEAMEQO-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_ACET_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C2H4O2/c1-2(3)4/h1H3,(H,3,4)/p-1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__706_c" id="M_CPD__45__706_c" name="24-methylenecholesterol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H46O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 398.6642</p>
            <p>smiles: [H][C@@]1(CC[C@@]2([H])[C@]3([H])CC=C4C[C@@H](O)CC[C@]4(C)[C@@]3([H])CC[C@]12C)[C@H](C)CCC(=C)C(C)C</p>
            <p>inchikey: INDVLXYUCBVVKW-PXBBAZSNSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__706_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C28H46O/c1-18(2)19(3)7-8-20(4)24-11-12-25-23-10-9-21-17-22(29)13-15-27(21,5)26(23)14-16-28(24,25)6/h9,18,20,22-26,29H,3,7-8,10-17H2,1-2,4-6H3/t20-,22+,23+,24-,25+,26+,27+,28-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__700_c" id="M_CPD__45__700_c" name="ergosta-5,7,24(28)-trien-3&amp;beta;-ol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H44O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 396.6484</p>
            <p>smiles: [H][C@@]1(CC[C@@]2([H])C3=CC=C4C[C@@H](O)CC[C@]4(C)[C@@]3([H])CC[C@]12C)[C@H](C)CCC(=C)C(C)C</p>
            <p>inchikey: ZEPNVCGPJXYABB-LOIOQLKMSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__700_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C28H44O/c1-18(2)19(3)7-8-20(4)24-11-12-25-23-10-9-21-17-22(29)13-15-27(21,5)26(23)14-16-28(24,25)6/h9-10,18,20,22,24-26,29H,3,7-8,11-17H2,1-2,4-6H3/t20-,22+,24-,25+,26+,27+,28-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_SUPER__45__OXIDE_c" id="M_SUPER__45__OXIDE_c" name="superoxide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 31.9993</p>
            <p>smiles: [O][O-]</p>
            <p>inchikey: OUUQCZGPVNCOIJ-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_SUPER__45__OXIDE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/HO2/c1-2/h1H/p-1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_2__45__PG_c" id="M_2__45__PG_c" name="2-phospho-D-glycerate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C3H4O7P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 183.0351</p>
            <p>smiles: OC[C@@H](OP([O-])([O-])=O)C([O-])=O</p>
            <p>inchikey: GXIURPTVHJPJLF-UWTATZPHSA-K</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_2__45__PG_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C3H7O7P/c4-1-2(3(5)6)10-11(7,8)9/h2,4H,1H2,(H,5,6)(H2,7,8,9)/p-3/t2-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CYS__45__tRNAs_c" id="M_CYS__45__tRNAs_c" name="a tRNAcys" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_3__45__P__45__SERINE_c" id="M_3__45__P__45__SERINE_c" name="3-phospho-L-serine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H6NO6P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 183.0577</p>
            <p>smiles: [NH3+][C@@H](COP([O-])([O-])=O)C([O-])=O</p>
            <p>inchikey: BZQFBWGGLXLEPQ-REOHCLBHSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_3__45__P__45__SERINE_c">
              <bqbiol:isVersionOf>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_IS30__45__with__45__Integrated__45__Transposon_c" id="M_IS30__45__with__45__Integrated__45__Transposon_c" name="an insertion sequence IS30 with integrated transposon" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Charged__45__CYS__45__tRNAs_c" id="M_Charged__45__CYS__45__tRNAs_c" name="an L-cysteinyl-[tRNAcys]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_IS30__45__Insertion__45__Sequences_c" id="M_IS30__45__Insertion__45__Sequences_c" name="an insertion sequence element IS30" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_tRNA__45__Containing__45__5MeAminoMe__45__2__45__ThioU_c" id="M_tRNA__45__Containing__45__5MeAminoMe__45__2__45__ThioU_c" name="a 5-methylaminomethyl-2-thiouridine in tRNA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_tRNA__45__Containing__45__5AminoMe__45__2__45__ThioUrdines_c" id="M_tRNA__45__Containing__45__5AminoMe__45__2__45__ThioUrdines_c" name="a 5-aminomethyl-2-thiouridine in tRNA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C20H29N3O20P3SR2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [H]O[C@H]1[C@@H](O)[C@H]([*])O[C@@H]1COP([O-])(=O)O[C@H]1[C@@H](O)[C@@H](O[C@@H]1COP([O-])(=O)O[C@H]1[C@@H](O)[C@H]([*])O[C@@H]1COP([O-])([O-])=O)n1cc(C[NH3+])c(=O)[nH]c1=S</p>
          </body>
        </notes>
      </species>
      <species metaid="M_3__45__MERCAPTO__45__PYRUVATE_c" id="M_3__45__MERCAPTO__45__PYRUVATE_c" name="3-mercaptopyruvate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H3O3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 119.12</p>
            <p>smiles: [O-]C(=O)C(=O)CS</p>
            <p>inchikey: OJOLFAIGOXZBCI-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_3__45__MERCAPTO__45__PYRUVATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C3H4O3S/c4-2(1-7)3(5)6/h7H,1H2,(H,5,6)/p-1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_3__45__SULFINOALANINE_c" id="M_3__45__SULFINOALANINE_c" name="3-sulfinoalanine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H6NO4S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 152.15</p>
            <p>smiles: [NH3+][C@@H](CS([O-])=O)C([O-])=O</p>
            <p>inchikey: ADVPTQAUNPRNPO-REOHCLBHSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_3__45__SULFINOALANINE_c">
              <bqbiol:isVersionOf>
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                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C3H7NO4S/c4-2(3(5)6)1-9(7)8/h2H,1,4H2,(H,5,6)(H,7,8)/p-1/t2-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD0__45__1028_c" id="M_CPD0__45__1028_c" name="2-cis,6-trans,10-trans-geranylgeranyl diphosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C20H33O7P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 447.421</p>
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        </notes>
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      <species metaid="M_MALTOTRIOSE_c" id="M_MALTOTRIOSE_c" name="maltotriose" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H32O16">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 504.4371</p>
            <p>smiles: OC[C@@H](O)[C@@H](O[C@H]1O[C@H](CO)[C@@H](O[C@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O)[C@H](O)[C@H]1O)[C@H](O)[C@@H](O)C=O</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 153.223</p>
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            <p>inchikey: XBKONSCREBSMCS-REOHCLBHSA-N</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 356.443</p>
            <p>smiles: C[S+](CCC[NH3+])C[C@H]1O[C@H]([C@H](O)[C@@H]1O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: ZUNBITIXDCPNSD-LSRJEVITSA-O</p>
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      <species metaid="M_CYSTINE_c" id="M_CYSTINE_c" name="L-cystine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12N2O4S2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 240.3</p>
            <p>smiles: [NH3+][C@@H](CSSC[C@H]([NH3+])C([O-])=O)C([O-])=O</p>
            <p>inchikey: LEVWYRKDKASIDU-IMJSIDKUSA-N</p>
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            <rdf:Description rdf:about="#M_CYSTINE_c">
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 104.1928</p>
            <p>smiles: [NH3+]CCCCC[NH3+]</p>
            <p>inchikey: VHRGRCVQAFMJIZ-UHFFFAOYSA-P</p>
          </body>
        </notes>
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            <rdf:Description rdf:about="#M_CADAVERINE_c">
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      <species metaid="M_5__45__METHYLTHIOADENOSINE_c" id="M_5__45__METHYLTHIOADENOSINE_c" name="S-methyl-5&apos;-thioadenosine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H15N5O3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 297.334</p>
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            <p>inchikey: WUUGFSXJNOTRMR-IOSLPCCCSA-N</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 162.2946</p>
            <p>smiles: [NH3+]CCCCC[NH2+]CCC[NH3+]</p>
            <p>inchikey: QZBYOYPROVGOGE-UHFFFAOYSA-Q</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 309.421</p>
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      <species metaid="M_LINOLENIC_ACID_c" id="M_LINOLENIC_ACID_c" name="&amp;alpha;-linolenate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H29O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 277.4222</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1112.11</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 365.6134</p>
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            <p>inchikey: GWHCXVQVJPWHRF-KTKRTIGZSA-M</p>
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          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1058.02</p>
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      <species metaid="M_CPD__45__10283_c" id="M_CPD__45__10283_c" name="3-oxo-behenoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H72N7O18P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1100.056</p>
            <p>smiles: CCCCCCCCCCCCCCCCCCCC(=O)CC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: RKCOGGUHKPTOQJ-GNSUAQHMSA-J</p>
          </body>
        </notes>
        <annotation>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 137.1133</p>
            <p>smiles: Oc1ccccc1C([O-])=O</p>
            <p>inchikey: YGSDEFSMJLZEOE-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
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                </rdf:Bag>
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      <species metaid="M_SALICYLALDEHYDE_c" id="M_SALICYLALDEHYDE_c" name="salicylaldehyde" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H6O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 122.1213</p>
            <p>smiles: [H]C(=O)c1ccccc1O</p>
            <p>inchikey: SMQUZDBALVYZAC-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_SALICYLALDEHYDE_c">
              <bqbiol:isVersionOf>
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                </rdf:Bag>
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      <species metaid="M_BCAA__45__dehydrogenase__45__2MP__45__DH__45__lipoyl_c" id="M_BCAA__45__dehydrogenase__45__2MP__45__DH__45__lipoyl_c" name="an [apo BCAA dehydrogenase E2 protein] N6-S-[2-methylpropanoyl]dihydrolipoyl-L-lysine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H21O2S2R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_BCAA__45__dehydrogenase__45__lipoyl_c" id="M_BCAA__45__dehydrogenase__45__lipoyl_c" name="an [apo BCAA dehydrogenase E2 protein] N6-lipoyl-L-lysine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H13OS2R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_ISOPENICILLIN__45__N_c" id="M_ISOPENICILLIN__45__N_c" name="isopenicillin N" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H20N3O6S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 358.391</p>
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            <rdf:Description rdf:about="#M_ISOPENICILLIN__45__N_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_N__45__5S__45__5__45__AMINO__45__5__45__CARBOXYPENTANOYL__45__L__45__CY_c" id="M_N__45__5S__45__5__45__AMINO__45__5__45__CARBOXYPENTANOYL__45__L__45__CY_c" name="N-[(5S)-5-amino-5-carboxypentanoyl]-L-cysteinyl-D-valine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H24N3O6S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 362.422</p>
            <p>smiles: CC(C)[C@@H](NC(=O)[C@H](CS)NC(=O)CCC[C@H]([NH3+])C([O-])=O)C([O-])=O</p>
            <p>inchikey: BYEIJZFKOAXBBV-ATZCPNFKSA-M</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_N__45__5S__45__5__45__AMINO__45__5__45__CARBOXYPENTANOYL__45__L__45__CY_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
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                </rdf:Bag>
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        </annotation>
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      <species metaid="M_ACYL__45__ACP_c" id="M_ACYL__45__ACP_c" name="an acyl-[acyl-carrier protein]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_TRANS__45__D2__45__ENOYL__45__ACP_c" id="M_TRANS__45__D2__45__ENOYL__45__ACP_c" name="a trans-2-enoyl-[acyl-carrier protein]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H2OR2S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_3Z__45__PHYCOERYTHROBILIN_c" id="M_3Z__45__PHYCOERYTHROBILIN_c" name="(3Z)-phycoerythrobilin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C33H36N4O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 584.6632</p>
            <p>smiles: C\C=C1\C(C)C(=O)N\C\1=C/C1=N/C(=C\c2[nH]c(CC3NC(=O)C(C=C)=C3C)c(C)c2CCC([O-])=O)/C(CCC([O-])=O)=C1C</p>
            <p>inchikey: CNEWLWMGPFUJPG-SEJZCTRTSA-L</p>
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        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_3Z__45__PHYCOERYTHROBILIN_c">
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        </annotation>
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      <species metaid="M_1516__45__DIHYDROBILIVERDIN_c" id="M_1516__45__DIHYDROBILIVERDIN_c" name="15,16-dihydrobiliverdin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C33H34N4O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 582.6474</p>
            <p>smiles: [H][C@]1(CC2=N\C(=C/c3[nH]c(\C=C4/NC(=O)C(C)=C4C=C)c(C)c3CCC([O-])=O)C(CCC([O-])=O)=C2C)NC(=O)C(C=C)=C1C</p>
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            <rdf:Description rdf:about="#M_1516__45__DIHYDROBILIVERDIN_c">
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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      </species>
      <species metaid="M_BILIVERDINE_c" id="M_BILIVERDINE_c" name="biliverdin-IX-&amp;alpha;" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C33H32N4O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 580.6315</p>
            <p>smiles: CC1=C(C=C)\C(NC1=O)=C\c1[nH]c(\C=C2/N=C(/C=C3\NC(=O)C(C=C)=C3C)C(C)=C2CCC([O-])=O)c(CCC([O-])=O)c1C</p>
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        <annotation>
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            <rdf:Description rdf:about="#M_BILIVERDINE_c">
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                </rdf:Bag>
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        </annotation>
      </species>
      <species metaid="M_3Z__45__PHYTOCHROMOBILIN_c" id="M_3Z__45__PHYTOCHROMOBILIN_c" name="(3Z)-phytochromobilin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C33H34N4O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 582.6474</p>
            <p>smiles: C\C=C1\C(C)C(=O)N\C\1=C/C1=N/C(=C\c2[nH]c(\C=C3/NC(=O)C(C=C)=C3C)c(C)c2CCC([O-])=O)/C(CCC([O-])=O)=C1C</p>
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            <rdf:Description rdf:about="#M_3Z__45__PHYTOCHROMOBILIN_c">
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                </rdf:Bag>
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      <species metaid="M_GUANINE_c" id="M_GUANINE_c" name="guanine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H5N5O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 151.1261</p>
            <p>smiles: Nc1nc2[nH]cnc2c(=O)[nH]1</p>
            <p>inchikey: UYTPUPDQBNUYGX-UHFFFAOYSA-N</p>
          </body>
        </notes>
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            <rdf:Description rdf:about="#M_GUANINE_c">
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      </species>
      <species metaid="M_CGMP_c" id="M_CGMP_c" name="cyclic-GMP" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H11N5O7P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 344.198</p>
            <p>smiles: Nc1nc2n(cnc2c(=O)[nH]1)[C@@H]1O[C@@H]2COP([O-])(=O)O[C@H]2[C@H]1O</p>
            <p>inchikey: ZOOGRGPOEVQQDX-UUOKFMHZSA-M</p>
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            <rdf:Description rdf:about="#M_CGMP_c">
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      <species metaid="M_BENZALDEHYDE_c" id="M_BENZALDEHYDE_c" name="benzaldehyde" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H6O">
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          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 106.1219</p>
            <p>smiles: [H]C(=O)c1ccccc1</p>
            <p>inchikey: HUMNYLRZRPPJDN-UHFFFAOYSA-N</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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            <p>mass: 398.6642</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 400.6801</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 432.6789</p>
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            <p>mass: 1021.903</p>
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            <p>mass: 1049.956</p>
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      <species metaid="M_Linoleoyl__45__groups_c" id="M_Linoleoyl__45__groups_c" name="a [glycerolipid]-linoleate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
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      <species metaid="M_Nucleoside__45__Triphosphates_c" id="M_Nucleoside__45__Triphosphates_c" name="a nucleoside triphosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C5H8O13P3R">
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_BUTANEDIOL_c" id="M_BUTANEDIOL_c" name="(R,R)-2,3-butanediol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H10O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 90.121</p>
            <p>smiles: C[C@@H](O)[C@@H](C)O</p>
            <p>inchikey: OWBTYPJTUOEWEK-QWWZWVQMSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_BUTANEDIOL_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C4H10O2/c1-3(5)4(2)6/h3-6H,1-2H3/t3-,4-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__10353_c" id="M_CPD__45__10353_c" name="(R)-acetoin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H8O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 88.1051</p>
            <p>smiles: C[C@@H](O)C(C)=O</p>
            <p>inchikey: ROWKJAVDOGWPAT-GSVOUGTGSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__10353_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C4H8O2/c1-3(5)4(2)6/h3,5H,1-2H3/t3-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_DEAMIDO__45__NAD_c" id="M_DEAMIDO__45__NAD_c" name="nicotinate adenine dinucleotide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H24N6O15P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 662.3951</p>
            <p>smiles: Nc1ncnc2n(cnc12)[C@@H]1O[C@H](COP([O-])(=O)OP([O-])(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)[n+]2cccc(c2)C([O-])=O)[C@@H](O)[C@H]1O</p>
            <p>inchikey: SENPVEZBRZQVST-HISDBWNOSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_DEAMIDO__45__NAD_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C21H26N6O15P2/c22-17-12-18(24-7-23-17)27(8-25-12)20-16(31)14(29)11(41-20)6-39-44(36,37)42-43(34,35)38-5-10-13(28)15(30)19(40-10)26-3-1-2-9(4-26)21(32)33/h1-4,7-8,10-11,13-16,19-20,28-31H,5-6H2,(H4-,22,23,24,32,33,34,35,36,37)/p-2/t10-,11-,13-,14-,15-,16-,19-,20-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_NICOTINATE_NUCLEOTIDE_c" id="M_NICOTINATE_NUCLEOTIDE_c" name="&amp;beta;-nicotinate D-ribonucleotide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C11H12NO9P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 333.1891</p>
            <p>smiles: O[C@H]1[C@@H](O)[C@@H](O[C@@H]1COP([O-])([O-])=O)[n+]1cccc(c1)C([O-])=O</p>
            <p>inchikey: JOUIQRNQJGXQDC-ZYUZMQFOSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_NICOTINATE_NUCLEOTIDE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C11H14NO9P/c13-8-7(5-20-22(17,18)19)21-10(9(8)14)12-3-1-2-6(4-12)11(15)16/h1-4,7-10,13-14H,5H2,(H2-,15,16,17,18,19)/p-2/t7-,8-,9-,10-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_NIACINE_c" id="M_NIACINE_c" name="nicotinate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H4NO2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 122.102</p>
            <p>smiles: [O-]C(=O)c1cccnc1</p>
            <p>inchikey: PVNIIMVLHYAWGP-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_NIACINE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C6H5NO2/c8-6(9)5-2-1-3-7-4-5/h1-4H,(H,8,9)/p-1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_NITRITE_c" id="M_NITRITE_c" name="nitrite" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="NO2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 46.006</p>
            <p>smiles: [O-]N=O</p>
            <p>inchikey: IOVCWXUNBOPUCH-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_NITRITE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/HNO2/c2-1-3/h(H,2,3)/p-1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_COUMARATE_c" id="M_COUMARATE_c" name="4-coumarate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H7O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 163.1506</p>
            <p>smiles: Oc1ccc(\C=C\C([O-])=O)cc1</p>
            <p>inchikey: NGSWKAQJJWESNS-ZZXKWVIFSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_COUMARATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C9H8O3/c10-8-4-1-7(2-5-8)3-6-9(11)12/h1-6,10H,(H,11,12)/p-1/b6-3+"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__1107_c" id="M_CPD__45__1107_c" name="D-myo-inositol 1,3,4,5,6-pentakisphosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-10" fbc:chemicalFormula="C6H7O21P5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 569.9815</p>
            <p>smiles: O[C@@H]1[C@H](OP([O-])([O-])=O)[C@@H](OP([O-])([O-])=O)[C@H](OP([O-])([O-])=O)[C@@H](OP([O-])([O-])=O)[C@@H]1OP([O-])([O-])=O</p>
            <p>inchikey: CTPQAXVNYGZUAJ-KXXVROSKSA-D</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__1107_c">
              <bqbiol:isVersionOf>
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                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C6H17O21P5/c7-1-2(23-28(8,9)10)4(25-30(14,15)16)6(27-32(20,21)22)5(26-31(17,18)19)3(1)24-29(11,12)13/h1-7H,(H2,8,9,10)(H2,11,12,13)(H2,14,15,16)(H2,17,18,19)(H2,20,21,22)/p-10/t1-,2+,3-,4-,5+,6+"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_MI__45__HEXAKISPHOSPHATE_c" id="M_MI__45__HEXAKISPHOSPHATE_c" name="phytate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-12" fbc:chemicalFormula="C6H6O24P6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 647.9466</p>
            <p>smiles: [O-]P([O-])(=O)O[C@H]1[C@H](OP([O-])([O-])=O)[C@@H](OP([O-])([O-])=O)[C@H](OP([O-])([O-])=O)[C@H](OP([O-])([O-])=O)[C@@H]1OP([O-])([O-])=O</p>
            <p>inchikey: IMQLKJBTEOYOSI-GPIVLXJGSA-B</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_MI__45__HEXAKISPHOSPHATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C6H18O24P6/c7-31(8,9)25-1-2(26-32(10,11)12)4(28-34(16,17)18)6(30-36(22,23)24)5(29-35(19,20)21)3(1)27-33(13,14)15/h1-6H,(H2,7,8,9)(H2,10,11,12)(H2,13,14,15)(H2,16,17,18)(H2,19,20,21)(H2,22,23,24)/p-12/t1-,2-,3-,4+,5-,6-"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_URIDINE_c" id="M_URIDINE_c" name="uridine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N2O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 244.2014</p>
            <p>smiles: OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n1ccc(=O)[nH]c1=O</p>
            <p>inchikey: DRTQHJPVMGBUCF-XVFCMESISA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_URIDINE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C9H12N2O6/c12-3-4-6(14)7(15)8(17-4)11-2-1-5(13)10-9(11)16/h1-2,4,6-8,12,14-15H,3H2,(H,10,13,16)/t4-,6-,7-,8-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CYTIDINE_c" id="M_CYTIDINE_c" name="cytidine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N3O5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 243.2166</p>
            <p>smiles: Nc1ccn([C@@H]2O[C@H](CO)[C@@H](O)[C@H]2O)c(=O)n1</p>
            <p>inchikey: UHDGCWIWMRVCDJ-XVFCMESISA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CYTIDINE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C9H13N3O5/c10-5-1-2-12(9(16)11-5)8-7(15)6(14)4(3-13)17-8/h1-2,4,6-8,13-15H,3H2,(H2,10,11,16)/t4-,6-,7-,8-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_SUCC__45__S__45__ALD_c" id="M_SUCC__45__S__45__ALD_c" name="succinate semialdehyde" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H5O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 101.0812</p>
            <p>smiles: [O-]C(=O)CCC=O</p>
            <p>inchikey: UIUJIQZEACWQSV-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_SUCC__45__S__45__ALD_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C4H6O3/c5-3-1-2-4(6)7/h3H,1-2H2,(H,6,7)/p-1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_MYO__45__INOSITOL_c" id="M_MYO__45__INOSITOL_c" name="myo-inositol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 180.1559</p>
            <p>smiles: O[C@H]1[C@H](O)[C@@H](O)[C@H](O)[C@H](O)[C@@H]1O</p>
            <p>inchikey: CDAISMWEOUEBRE-GPIVLXJGSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_MYO__45__INOSITOL_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C6H12O6/c7-1-2(8)4(10)6(12)5(11)3(1)9/h1-12H/t1-,2-,3-,4+,5-,6-"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__804_c" id="M_CPD__45__804_c" name="(4S)-4-hydroxy-2-oxoheptanedioate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C7H8O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 188.1359</p>
            <p>smiles: O[C@@H](CCC([O-])=O)CC(=O)C([O-])=O</p>
            <p>inchikey: HNOAJOYERZTSNK-BYPYZUCNSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__804_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C7H10O6/c8-4(1-2-6(10)11)3-5(9)7(12)13/h4,8H,1-3H2,(H,10,11)(H,12,13)/p-2/t4-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CMP_c" id="M_CMP_c" name="CMP" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H12N3O8P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 321.1817</p>
            <p>smiles: Nc1ccn([C@@H]2O[C@H](COP([O-])([O-])=O)[C@@H](O)[C@H]2O)c(=O)n1</p>
            <p>inchikey: IERHLVCPSMICTF-XVFCMESISA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CMP_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C9H14N3O8P/c10-5-1-2-12(9(15)11-5)8-7(14)6(13)4(20-8)3-19-21(16,17)18/h1-2,4,6-8,13-14H,3H2,(H2,10,11,15)(H2,16,17,18)/p-2/t4-,6-,7-,8-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Lipid__45__dihydrosterculate_c" id="M_Lipid__45__dihydrosterculate_c" name="a [glycerolipid]-dihydrosterculate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H35OR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CCCCCCCCC1CC1CCCCCCCC(*)=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_Oleoyl__45__lipid_c" id="M_Oleoyl__45__lipid_c" name="a [glycerolipid]-oleate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H33OR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CCCCCCCC\C=C/CCCCCCCC(*)=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_Cytochromes__45__C__45__Reduced_e" id="M_Cytochromes__45__C__45__Reduced_e" name="a reduced c-type cytochrome" compartment="e" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_HOMOGENTISATE_c" id="M_HOMOGENTISATE_c" name="homogentisate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H7O4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 167.1393</p>
            <p>smiles: Oc1ccc(O)c(CC([O-])=O)c1</p>
            <p>inchikey: IGMNYECMUMZDDF-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_HOMOGENTISATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C8H8O4/c9-6-1-2-7(10)5(3-6)4-8(11)12/h1-3,9-10H,4H2,(H,11,12)/p-1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Cytochromes__45__C__45__Oxidized_e" id="M_Cytochromes__45__C__45__Oxidized_e" name="an oxidized c-type cytochrome" compartment="e" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_INOSINE_c" id="M_INOSINE_c" name="inosine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N4O5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 268.2261</p>
            <p>smiles: OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n1cnc2c(O)ncnc12</p>
            <p>inchikey: UGQMRVRMYYASKQ-KQYNXXCUSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_INOSINE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C10H12N4O5/c15-1-4-6(16)7(17)10(19-4)14-3-13-5-8(14)11-2-12-9(5)18/h2-4,6-7,10,15-17H,1H2,(H,11,12,18)/t4-,6-,7-,10-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__14276_c" id="M_CPD__45__14276_c" name="(3R)-3-hydroxy-behenoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H74N7O18P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1102.072</p>
            <p>smiles: CCCCCCCCCCCCCCCCCCCC(O)CC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: VNJQSRVXTRJVAZ-NGZXMKLGSA-J</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__14276_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C43H78N7O18P3S/c1-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-31(51)26-34(53)72-25-24-45-33(52)22-23-46-41(56)38(55)43(2,3)28-65-71(62,63)68-70(60,61)64-27-32-37(67-69(57,58)59)36(54)42(66-32)50-30-49-35-39(44)47-29-48-40(35)50/h29-32,36-38,42,51,54-55H,4-28H2,1-3H3,(H,45,52)(H,46,56)(H,60,61)(H,62,63)(H2,44,47,48)(H2,57,58,59)/p-4/t31?,32-,36-,37-,38+,42-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__14300_c" id="M_CPD__45__14300_c" name="3-oxo-(11Z)-eicos-11-enoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H66N7O18P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1069.987</p>
            <p>smiles: CCCCCCCC\C=C/CCCCCCCC(=O)CC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: ASKKPQKSCFYPPP-FVLDFCIYSA-J</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__14300_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C41H70N7O18P3S/c1-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-29(49)24-32(51)70-23-22-43-31(50)20-21-44-39(54)36(53)41(2,3)26-63-69(60,61)66-68(58,59)62-25-30-35(65-67(55,56)57)34(52)40(64-30)48-28-47-33-37(42)45-27-46-38(33)48/h11-12,27-28,30,34-36,40,52-53H,4-10,13-26H2,1-3H3,(H,43,50)(H,44,54)(H,58,59)(H,60,61)(H2,42,45,46)(H2,55,56,57)/p-4/b12-11-/t30-,34-,35-,36+,40-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__12321_c" id="M_CPD__45__12321_c" name="15-cis-phytoene" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C40H64">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 544.9362</p>
            <p>smiles: CC(C)=CCC\C(C)=C\CC\C(C)=C\CC\C(C)=C\C=C/C=C(\C)CC\C=C(/C)CC\C=C(/C)CCC=C(C)C</p>
            <p>inchikey: YVLPJIGOMTXXLP-BHLJUDRVSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__12321_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C40H64/c1-33(2)19-13-23-37(7)27-17-31-39(9)29-15-25-35(5)21-11-12-22-36(6)26-16-30-40(10)32-18-28-38(8)24-14-20-34(3)4/h11-12,19-22,27-30H,13-18,23-26,31-32H2,1-10H3/b12-11-,35-21+,36-22+,37-27+,38-28+,39-29+,40-30+"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__1108_c" id="M_CPD__45__1108_c" name="a 1-phosphatidyl-1D-myo-inositol 4-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C11H15O16P2R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [H][C@@](COC([*])=O)(COP([O-])(=O)O[C@@H]1[C@H](O)[C@H](O)[C@@H](OP([O-])([O-])=O)[C@H](O)[C@H]1O)OC([*])=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_INOSITOL__45__1__45__4__45__BISPHOSPHATE_c" id="M_INOSITOL__45__1__45__4__45__BISPHOSPHATE_c" name="D-myo-inositol (1,4)-bisphosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C6H10O12P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 336.0861</p>
            <p>smiles: O[C@H]1[C@@H](O)[C@@H](OP([O-])([O-])=O)[C@H](O)[C@@H](O)[C@@H]1OP([O-])([O-])=O</p>
            <p>inchikey: PELZSPZCXGTUMR-RTPHHQFDSA-J</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_INOSITOL__45__1__45__4__45__BISPHOSPHATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C6H14O12P2/c7-1-2(8)6(18-20(14,15)16)4(10)3(9)5(1)17-19(11,12)13/h1-10H,(H2,11,12,13)(H2,14,15,16)/p-4/t1-,2-,3-,4+,5+,6+/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
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          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__7014_c" id="M_CPD__45__7014_c" name="chlorophyllide b" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C35H30MgN4O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 626.942</p>
            <p>smiles: CCC1=C(C=O)C2=[N+]3C1=Cc1c(C)c4C(=O)[C-](C(=O)OC)C5=C6[C@@H](CCC([O-])=O)[C@H](C)C7=[N+]6[Mg--]3(n1c45)n1c(=C7)c(C)c(C=C)c1=C2</p>
            <p>inchikey: WSVKRUWOLPKKOO-XXRBRTKDSA-K</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__7014_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C35H33N4O6.Mg/c1-7-18-15(3)22-11-23-16(4)20(9-10-28(41)42)32(38-23)30-31(35(44)45-6)34(43)29-17(5)24(39-33(29)30)12-26-19(8-2)21(14-40)27(37-26)13-25(18)36-22;/h7,11-14,16,20H,1,8-10H2,2-6H3,(H3,36,37,38,39,40,41,42,43);/q-1;+2/p-3/t16-,20-;/m0./s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
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          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CHLOROPHYLLIDE__45__A_c" id="M_CHLOROPHYLLIDE__45__A_c" name="chlorophyllide a" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C35H32MgN4O5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 612.958</p>
            <p>smiles: CCC1=C(C)C2=[N+]3C1=Cc1c(C)c4C(=O)[C-](C(=O)OC)C5=C6[C@@H](CCC([O-])=O)[C@H](C)C7=[N+]6[Mg--]3(n1c45)n1c(=C7)c(C)c(C=C)c1=C2</p>
            <p>inchikey: IZOAGQOHKWGYKF-PVMVIUQGSA-K</p>
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        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CHLOROPHYLLIDE__45__A_c">
              <bqbiol:isVersionOf>
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                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C35H35N4O5.Mg/c1-8-19-15(3)22-12-24-17(5)21(10-11-28(40)41)32(38-24)30-31(35(43)44-7)34(42)29-18(6)25(39-33(29)30)14-27-20(9-2)16(4)23(37-27)13-26(19)36-22;/h8,12-14,17,21H,1,9-11H2,2-7H3,(H3,36,37,38,39,40,41,42);/q-1;+2/p-3/t17-,21-;/m0./s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CARBAMATE_c" id="M_CARBAMATE_c" name="carbamate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CH2NO2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 60.0326</p>
            <p>smiles: NC([O-])=O</p>
            <p>inchikey: KXDHJXZQYSOELW-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CARBAMATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/CH3NO2/c2-1(3)4/h2H2,(H,3,4)/p-1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_ALLO__45__THR_c" id="M_ALLO__45__THR_c" name="DL-allothreonine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 119.1192</p>
            <p>smiles: CC(O)C([NH3+])C([O-])=O</p>
            <p>inchikey: AYFVYJQAPQTCCC-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_ALLO__45__THR_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C4H9NO3/c1-2(6)3(5)4(7)8/h2-3,6H,5H2,1H3,(H,7,8)"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_FUM_c" id="M_FUM_c" name="fumarate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H2O4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 114.0574</p>
            <p>smiles: [O-]C(=O)\C=C\C([O-])=O</p>
            <p>inchikey: VZCYOOQTPOCHFL-OWOJBTEDSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_FUM_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C4H4O4/c5-3(6)1-2-4(7)8/h1-2H,(H,5,6)(H,7,8)/p-2/b2-1+"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_3__45__UREIDO__45__PROPIONATE_c" id="M_3__45__UREIDO__45__PROPIONATE_c" name="3-ureidopropanoate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H7N2O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 131.1105</p>
            <p>smiles: NC(=O)NCCC([O-])=O</p>
            <p>inchikey: JSJWCHRYRHKBBW-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_3__45__UREIDO__45__PROPIONATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_B__45__ALANINE_c" id="M_B__45__ALANINE_c" name="&amp;beta;-alanine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 89.0932</p>
            <p>smiles: [NH3+]CCC([O-])=O</p>
            <p>inchikey: UCMIRNVEIXFBKS-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_B__45__ALANINE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C3H7NO2/c4-2-1-3(5)6/h1-2,4H2,(H,5,6)"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_GALACTOSE_c" id="M_GALACTOSE_c" name="&amp;beta;-D-galactose" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 180.1559</p>
            <p>smiles: OC[C@H]1O[C@@H](O)[C@H](O)[C@@H](O)[C@H]1O</p>
            <p>inchikey: WQZGKKKJIJFFOK-FPRJBGLDSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_GALACTOSE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3+,4+,5-,6-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
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          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__15972_c" id="M_CPD__45__15972_c" name="lactose" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H22O11">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 342.2965</p>
            <p>smiles: OC[C@H]1O[C@@H](O[C@H]2[C@H](O)[C@@H](O)C(O)O[C@@H]2CO)[C@H](O)[C@@H](O)[C@H]1O</p>
            <p>inchikey: GUBGYTABKSRVRQ-QKKXKWKRSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__15972_c">
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                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C12H22O11/c13-1-3-5(15)6(16)9(19)12(22-3)23-10-4(2-14)21-11(20)8(18)7(10)17/h3-20H,1-2H2/t3-,4-,5+,6+,7-,8-,9-,10-,11?,12+/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_5__45__10__45__METHENYL__45__THF__45__GLU__45__N_c" id="M_5__45__10__45__METHENYL__45__THF__45__GLU__45__N_c" name="a 5,10-methenyltetrahydrofolate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H20N7O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 454.4166</p>
            <p>smiles: [H][C@@]12CN(C=[N+]1c1c(NC2)nc(N)[nH]c1=O)c1ccc(cc1)C(=O)N[C@@H](CCC([O-])=O)C([O-])=O</p>
            <p>inchikey: MEANFMOQMXYMCT-OLZOCXBDSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_5__45__10__45__METHENYL__45__THF__45__GLU__45__N_c">
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                <rdf:Bag>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
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        </annotation>
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      <species metaid="M_ARG_c" id="M_ARG_c" name="L-arginine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H15N4O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 175.2084</p>
            <p>smiles: NC(=[NH2+])NCCC[C@H]([NH3+])C([O-])=O</p>
            <p>inchikey: ODKSFYDXXFIFQN-BYPYZUCNSA-O</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_ARG_c">
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                <rdf:Bag>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
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      </species>
      <species metaid="M_CPD__45__308_c" id="M_CPD__45__308_c" name="D-nopaline" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H19N4O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 303.2923</p>
            <p>smiles: NC(=[NH2+])NCCC[C@H]([NH2+][C@H](CCC([O-])=O)C([O-])=O)C([O-])=O</p>
            <p>inchikey: LMKYZBGVKHTLTN-NKWVEPMBSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__308_c">
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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        </annotation>
      </species>
      <species metaid="M_METHYLENE__45__THF_c" id="M_METHYLENE__45__THF_c" name="5,10-methylenetetrahydropteroyl mono-L-glutamate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H21N7O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 455.4251</p>
            <p>smiles: [H][C@@]12CN(CN1c1c(NC2)nc(N)[nH]c1=O)c1ccc(cc1)C(=O)N[C@@H](CCC([O-])=O)C([O-])=O</p>
            <p>inchikey: QYNUQALWYRSVHF-OLZOCXBDSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_METHYLENE__45__THF_c">
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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        </annotation>
      </species>
      <species metaid="M_CANAVANINOSUCCINATE_c" id="M_CANAVANINOSUCCINATE_c" name="canavaninosuccinate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H15N4O7">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 291.2385</p>
            <p>smiles: [NH3+]C(CCONC(=[NH2+])NC(CC([O-])=O)C([O-])=O)C([O-])=O</p>
            <p>inchikey: SGYMGUGIGTWWLU-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CANAVANINOSUCCINATE_c">
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_O__45__UREIDOHOMOSERINE_c" id="M_O__45__UREIDOHOMOSERINE_c" name="O-ureidohomoserine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11N3O4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 177.1585</p>
            <p>smiles: [NH3+]C(CCONC([O-])=[NH2+])C([O-])=O</p>
            <p>inchikey: SFYVZOSIAIZWQU-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_O__45__UREIDOHOMOSERINE_c">
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_ADENOSINE_DIPHOSPHATE_RIBOSE_c" id="M_ADENOSINE_DIPHOSPHATE_RIBOSE_c" name="ADP-D-ribose" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H21N5O14P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 557.301</p>
            <p>smiles: Nc1ncnc2n(cnc12)[C@@H]1O[C@H](COP([O-])(=O)OP([O-])(=O)OC[C@H]2OC(O)[C@H](O)[C@@H]2O)[C@@H](O)[C@H]1O</p>
            <p>inchikey: SRNWOUGRCWSEMX-TYASJMOZSA-L</p>
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        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_ADENOSINE_DIPHOSPHATE_RIBOSE_c">
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__10794_c" id="M_CPD__45__10794_c" name="ADP ribose 1&apos;&apos;-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C15H20N5O17P3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 635.2661</p>
            <p>smiles: Nc1ncnc2n(cnc12)[C@@H]1O[C@H](COP([O-])(=O)OP([O-])(=O)OC[C@H]2O[C@H](OP([O-])([O-])=O)[C@H](O)[C@@H]2O)[C@@H](O)[C@H]1O</p>
            <p>inchikey: CUNFRFHBHMFVPH-KEOHHSTQSA-J</p>
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        </notes>
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        </annotation>
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      <species metaid="M_L__45__seryl__45__SEC__45__tRNAs_c" id="M_L__45__seryl__45__SEC__45__tRNAs_c" name="an L-seryl-[tRNAsec]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_O__45__phospho__45__L__45__seryl__45__tRNASecs_c" id="M_O__45__phospho__45__L__45__seryl__45__tRNASecs_c" name="an O-phospho-L-seryl-[tRNASec]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 157.93</p>
            <p>smiles: [O-]P([O-])([O-])=[Se]</p>
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      <species metaid="M_Charged__45__SEC__45__tRNAs_c" id="M_Charged__45__SEC__45__tRNAs_c" name="an L-selenocysteinyl-[tRNAsec]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      <species metaid="M_3__45__oxo__45__cerotoyl__45__ACPs_c" id="M_3__45__oxo__45__cerotoyl__45__ACPs_c" name="a 3-oxo-cerotoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      <species metaid="M_NITRATE_c" id="M_NITRATE_c" name="nitrate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="NO3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 62.0054</p>
            <p>smiles: [O-][N+]([O-])=O</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CCCCCCCCCCCCCCCCCC(=O)OC[C@H](COP([O-])([O-])=O)OC([*])=O</p>
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        </notes>
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      <species metaid="M_Long__45__Chain__45__Acyl__45__ACPs_c" id="M_Long__45__Chain__45__Acyl__45__ACPs_c" name="a long-chain acyl-[acyl-carrier protein]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      <species metaid="M_CPD0__45__1423_c" id="M_CPD0__45__1423_c" name="1-stearoyl-2-stearoyl-sn-glycerol 3-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C39H75O8P">
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          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 702.9829</p>
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      <species metaid="M_Oleoyl__45__ACPs_c" id="M_Oleoyl__45__ACPs_c" name="an oleoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H53N2O8PRS">
        <notes>
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      <species metaid="M_CPD__45__17319_c" id="M_CPD__45__17319_c" name="1-stearoyl-2-oleoyl-sn-glycerol 3-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C39H73O8P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 700.967</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1091.993</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1049.956</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1120.046</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1078.009</p>
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        <notes>
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            <p>mass: 1075.993</p>
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      </species>
      <species metaid="M_Tau__45__proteins_c" id="M_Tau__45__proteins_c" name="a tau protein" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_O__45__phospho__45__tau__45__proteins_c" id="M_O__45__phospho__45__tau__45__proteins_c" name="an O-phospho-tau protein" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_GUANOSINE_c" id="M_GUANOSINE_c" name="guanosine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 283.2407</p>
            <p>smiles: Nc1nc2n(cnc2c(=O)[nH]1)[C@@H]1O[C@H](CO)[C@@H](O)[C@H]1O</p>
            <p>inchikey: NYHBQMYGNKIUIF-UUOKFMHZSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_GUANOSINE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C10H13N5O5/c11-10-13-7-4(8(19)14-10)12-2-15(7)9-6(18)5(17)3(1-16)20-9/h2-3,5-6,9,16-18H,1H2,(H3,11,13,14,19)/t3-,5-,6-,9-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_ADP__45__D__45__GLUCOSE_c" id="M_ADP__45__D__45__GLUCOSE_c" name="ADP-&amp;alpha;-D-glucose" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H23N5O15P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 587.3269</p>
            <p>smiles: Nc1ncnc2n(cnc12)[C@@H]1O[C@H](COP([O-])(=O)OP([O-])(=O)O[C@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O)[C@@H](O)[C@H]1O</p>
            <p>inchikey: WFPZSXYXPSUOPY-ROYWQJLOSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_ADP__45__D__45__GLUCOSE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C16H25N5O15P2/c17-13-7-14(19-3-18-13)21(4-20-7)15-11(26)9(24)6(33-15)2-32-37(28,29)36-38(30,31)35-16-12(27)10(25)8(23)5(1-22)34-16/h3-6,8-12,15-16,22-27H,1-2H2,(H,28,29)(H,30,31)(H2,17,18,19)/p-2/t5-,6-,8-,9-,10+,11-,12-,15-,16-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_ALPHA__45__GLC__45__6__45__P_c" id="M_ALPHA__45__GLC__45__6__45__P_c" name="&amp;alpha;-D-glucose 6-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 258.121</p>
            <p>smiles: O[C@H]1O[C@H](COP([O-])([O-])=O)[C@@H](O)[C@H](O)[C@H]1O</p>
            <p>inchikey: NBSCHQHZLSJFNQ-DVKNGEFBSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_ALPHA__45__GLC__45__6__45__P_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C6H13O9P/c7-3-2(1-14-16(11,12)13)15-6(10)5(9)4(3)8/h2-10H,1H2,(H2,11,12,13)/p-2/t2-,3-,4+,5-,6+/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_TREHALOSE__45__6P_c" id="M_TREHALOSE__45__6P_c" name="&amp;alpha;,&amp;alpha;-trehalose 6-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C12H21O14P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 420.2616</p>
            <p>smiles: OC[C@H]1O[C@H](O[C@H]2O[C@H](COP([O-])([O-])=O)[C@@H](O)[C@H](O)[C@H]2O)[C@H](O)[C@@H](O)[C@@H]1O</p>
            <p>inchikey: LABSPYBHMPDTEL-LIZSDCNHSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_TREHALOSE__45__6P_c">
              <bqbiol:isVersionOf>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_SORBITOL_c" id="M_SORBITOL_c" name="D-sorbitol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H14O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 182.1718</p>
            <p>smiles: OC[C@H](O)[C@@H](O)[C@H](O)[C@H](O)CO</p>
            <p>inchikey: FBPFZTCFMRRESA-JGWLITMVSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_SORBITOL_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C6H14O6/c7-1-3(9)5(11)6(12)4(10)2-8/h3-12H,1-2H2/t3-,4+,5-,6-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__15382_c" id="M_CPD__45__15382_c" name="keto-D-fructose" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 180.1559</p>
            <p>smiles: OC[C@@H](O)[C@@H](O)[C@H](O)C(=O)CO</p>
            <p>inchikey: BJHIKXHVCXFQLS-UYFOZJQFSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__15382_c">
              <bqbiol:isVersionOf>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__6993_c" id="M_CPD__45__6993_c" name="pinocembrin chalcone" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H11O4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 255.246</p>
            <p>smiles: Oc1cc(O)c(C(=O)\C=C\c2ccccc2)c([O-])c1</p>
            <p>inchikey: LOYXTWZXLWHMBX-VOTSOKGWSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__6993_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C15H12O4/c16-11-8-13(18)15(14(19)9-11)12(17)7-6-10-4-2-1-3-5-10/h1-9,16,18-19H/p-1/b7-6+"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
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        </annotation>
      </species>
      <species metaid="M_CINNAMOYL__45__COA_c" id="M_CINNAMOYL__45__COA_c" name="(E)-cinnamoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C30H38N7O17P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 893.648</p>
            <p>smiles: CC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12)[C@@H](O)C(=O)NCCC(=O)NCCSC(=O)\C=C\c1ccccc1</p>
            <p>inchikey: JVNVHNHITFVWIX-KZKUDURGSA-J</p>
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        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CINNAMOYL__45__COA_c">
              <bqbiol:isVersionOf>
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        </annotation>
      </species>
      <species metaid="M_SACCHAROPINE_c" id="M_SACCHAROPINE_c" name="L-saccharopine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H19N2O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 275.2789</p>
            <p>smiles: [NH3+][C@@H](CCCC[NH2+][C@@H](CCC([O-])=O)C([O-])=O)C([O-])=O</p>
            <p>inchikey: ZDGJAHTZVHVLOT-YUMQZZPRSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_SACCHAROPINE_c">
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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        </annotation>
      </species>
      <species metaid="M_P__45__NITROPHENOL_c" id="M_P__45__NITROPHENOL_c" name="4-nitrophenol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H4NO3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 138.1014</p>
            <p>smiles: [O-]c1ccc(cc1)[N+]([O-])=O</p>
            <p>inchikey: BTJIUGUIPKRLHP-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_P__45__NITROPHENOL_c">
              <bqbiol:isVersionOf>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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        </annotation>
      </species>
      <species metaid="M_UROPORPHYRINOGEN__45__III_c" id="M_UROPORPHYRINOGEN__45__III_c" name="uroporphyrinogen-III" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C40H36N4O16">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 828.7354</p>
            <p>smiles: [O-]C(=O)CCc1c2Cc3[nH]c(Cc4[nH]c(Cc5[nH]c(Cc([nH]2)c1CC([O-])=O)c(CCC([O-])=O)c5CC([O-])=O)c(CCC([O-])=O)c4CC([O-])=O)c(CC([O-])=O)c3CCC([O-])=O</p>
            <p>inchikey: HUHWZXWWOFSFKF-UHFFFAOYSA-F</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_UROPORPHYRINOGEN__45__III_c">
              <bqbiol:isVersionOf>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_LYS_c" id="M_LYS_c" name="L-lysine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H15N2O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 147.195</p>
            <p>smiles: [NH3+]CCCC[C@H]([NH3+])C([O-])=O</p>
            <p>inchikey: KDXKERNSBIXSRK-YFKPBYRVSA-O</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_LYS_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C6H14N2O2/c7-4-2-1-3-5(8)6(9)10/h5H,1-4,7-8H2,(H,9,10)/p+1/t5-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
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        </annotation>
      </species>
      <species metaid="M_DIHYDROSIROHYDROCHLORIN_c" id="M_DIHYDROSIROHYDROCHLORIN_c" name="precorrin-2" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C42H41N4O16">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 857.796</p>
            <p>smiles: C[C@]1(CC([O-])=O)[C@H](CCC([O-])=O)\C2=C\c3[nH]c(Cc4[nH]c(\C=C5/N=C(/C=C1\[NH2+]2)[C@@H](CCC([O-])=O)[C@]5(C)CC([O-])=O)c(CC([O-])=O)c4CCC([O-])=O)c(CCC([O-])=O)c3CC([O-])=O</p>
            <p>inchikey: OQIIYZQTTMKFAU-ZNLOQLQNSA-G</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_DIHYDROSIROHYDROCHLORIN_c">
              <bqbiol:isVersionOf>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__194_c" id="M_CPD__45__194_c" name="4-nitrophenyl phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H4NO6P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 217.0739</p>
            <p>smiles: [O-][N+](=O)c1ccc(OP([O-])([O-])=O)cc1</p>
            <p>inchikey: XZKIHKMTEMTJQX-UHFFFAOYSA-L</p>
          </body>
        </notes>
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            <rdf:Description rdf:about="#M_CPD__45__194_c">
              <bqbiol:isVersionOf>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__14378_c" id="M_CPD__45__14378_c" name="dehydrospermidine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C7H20N3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 146.2522</p>
            <p>smiles: [NH3+]CCC\C=[NH+]\CCC[NH3+]</p>
            <p>inchikey: YAVLYBVKPXLZEQ-UXBLZVDNSA-Q</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_CPD__45__14378_c">
              <bqbiol:isVersionOf>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_SPERMIDINE_c" id="M_SPERMIDINE_c" name="spermidine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C7H22N3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 148.268</p>
            <p>smiles: [NH3+]CCCC[NH2+]CCC[NH3+]</p>
            <p>inchikey: ATHGHQPFGPMSJY-UHFFFAOYSA-Q</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_SPERMIDINE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C7H19N3/c8-4-1-2-6-10-7-3-5-9/h10H,1-9H2/p+3"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
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        </annotation>
      </species>
      <species metaid="M_CPD__45__68_c" id="M_CPD__45__68_c" name="1-aminocyclopropane-1-carboxylate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7NO2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 101.1039</p>
            <p>smiles: [NH3+]C1(CC1)C([O-])=O</p>
            <p>inchikey: PAJPWUMXBYXFCZ-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_CPD__45__68_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C4H7NO2/c5-4(1-2-4)3(6)7/h1-2,5H2,(H,6,7)"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_N__45__4__45__aminobutylidene__45__enzyme__45__lysine_c" id="M_N__45__4__45__aminobutylidene__45__enzyme__45__lysine_c" name="a [deoxyhypusine synthase]-N-(4-aminobutylidene)-lysine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__313_c" id="M_CPD__45__313_c" name="propane-1,3-diamine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C3H12N2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 76.1397</p>
            <p>smiles: [NH3+]CCC[NH3+]</p>
            <p>inchikey: XFNJVJPLKCPIBV-UHFFFAOYSA-P</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_CPD__45__313_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C3H10N2/c4-2-1-3-5/h1-5H2/p+2"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Beta__45__3__45__hydroxybutyryl__45__ACPs_c" id="M_Beta__45__3__45__hydroxybutyryl__45__ACPs_c" name="a (3R)-3-hydroxybutanoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H27N2O9PRS">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Crotonyl__45__ACPs_c" id="M_Crotonyl__45__ACPs_c" name="a crotonyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H5OSR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: C\C=C\C(=O)S*</p>
          </body>
        </notes>
      </species>
      <species metaid="M_ASCORBATE_c" id="M_ASCORBATE_c" name="L-ascorbate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H7O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 175.1167</p>
            <p>smiles: [H][C@@]1(OC(=O)C(O)=C1[O-])[C@@H](O)CO</p>
            <p>inchikey: CIWBSHSKHKDKBQ-JLAZNSOCSA-M</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_ASCORBATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C6H8O6/c7-1-2(8)5-3(9)4(10)6(11)12-5/h2,5,7-10H,1H2/p-1/t2-,5+/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_N__45__4__45__aminobutylidene__45__eIF5A__45__lysine_c" id="M_N__45__4__45__aminobutylidene__45__eIF5A__45__lysine_c" name="an [eIF5A-precursor]-N-(4-aminobutylidene)-lysine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C11H22N4O2R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [NH3+]CCC\C=[NH+]\CCCC[C@H](NC([*])=O)C(=O)N[*]</p>
          </body>
        </notes>
      </species>
      <species metaid="M_CPD0__45__1107_c" id="M_CPD0__45__1107_c" name="&amp;beta;-L-fucopyranose" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 164.1565</p>
            <p>smiles: C[C@@H]1O[C@H](O)[C@@H](O)[C@H](O)[C@@H]1O</p>
            <p>inchikey: SHZGCJCMOBCMKK-KGJVWPDLSA-N</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_CPD0__45__1107_c">
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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        </annotation>
      </species>
      <species metaid="M_CPD__45__318_c" id="M_CPD__45__318_c" name="monodehydroascorbate radical" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H6O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 174.1088</p>
            <p>smiles: [H][C@@]1(OC(=O)C([O-])=C1[O])[C@@H](O)CO</p>
            <p>inchikey: LHFJOBMTAJJOTB-JLAZNSOCSA-M</p>
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        </notes>
        <annotation>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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        </annotation>
      </species>
      <species metaid="M_R__45__3__45__Hydroxypalmitoyl__45__ACPs_c" id="M_R__45__3__45__Hydroxypalmitoyl__45__ACPs_c" name="a (3R)-3-hydroxypalmitoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H31O2SR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_EIF5A__45__LYSINE_c" id="M_EIF5A__45__LYSINE_c" name="an [eIF5A-precursor]-lysine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H13N3O2R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Lipoyl__45__Protein__45__N6__45__lipoyllysine_c" id="M_Lipoyl__45__Protein__45__N6__45__lipoyllysine_c" name="a [lipoyl-carrier protein]-N6-lipoyl-L-lysine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H14NOS2R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [*]NC(=O)CCCCC1CCSS1</p>
          </body>
        </notes>
      </species>
      <species metaid="M_2__45__Hexadecenoyl__45__ACPs_c" id="M_2__45__Hexadecenoyl__45__ACPs_c" name="a trans hexadecenoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H29OSR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CCCCCCCCCCCCC\C=C\C(=O)S[*]</p>
          </body>
        </notes>
      </species>
      <species metaid="M_AMINO__45__OH__45__HYDROXYMETHYL__45__DIHYDROPTERIDINE_c" id="M_AMINO__45__OH__45__HYDROXYMETHYL__45__DIHYDROPTERIDINE_c" name="6-(hydroxymethyl)-7,8-dihydropterin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H9N5O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 195.1787</p>
            <p>smiles: Nc1nc2NCC(CO)=Nc2c(=O)[nH]1</p>
            <p>inchikey: CQQNNQTXUGLUEV-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_AMINO__45__OH__45__HYDROXYMETHYL__45__DIHYDROPTERIDINE_c">
              <bqbiol:isVersionOf>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_GLYCOLALDEHYDE_c" id="M_GLYCOLALDEHYDE_c" name="glycolaldehyde" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H4O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 60.052</p>
            <p>smiles: [H]C(=O)CO</p>
            <p>inchikey: WGCNASOHLSPBMP-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_GLYCOLALDEHYDE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C2H4O2/c3-1-2-4/h1,4H,2H2"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
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        </annotation>
      </species>
      <species metaid="M_DIHYDRO__45__NEO__45__PTERIN_c" id="M_DIHYDRO__45__NEO__45__PTERIN_c" name="7,8-dihydroneopterin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N5O4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 255.2306</p>
            <p>smiles: Nc1nc2NCC(=Nc2c(=O)[nH]1)[C@H](O)[C@H](O)CO</p>
            <p>inchikey: YQIFAMYNGGOTFB-XINAWCOVSA-N</p>
          </body>
        </notes>
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            <rdf:Description rdf:about="#M_DIHYDRO__45__NEO__45__PTERIN_c">
              <bqbiol:isVersionOf>
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          </rdf:RDF>
        </annotation>
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      <species metaid="M_DIHYDRONEOPTERIN__45__P_c" id="M_DIHYDRONEOPTERIN__45__P_c" name="7,8-dihydroneopterin 3&apos;-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H12N5O7P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 333.1957</p>
            <p>smiles: Nc1nc2NCC(=Nc2c(=O)[nH]1)[C@H](O)[C@H](O)COP([O-])([O-])=O</p>
            <p>inchikey: PLSQMGZYOGSOCE-XINAWCOVSA-L</p>
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            <rdf:Description rdf:about="#M_DIHYDRONEOPTERIN__45__P_c">
              <bqbiol:isVersionOf>
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                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C9H14N5O7P/c10-9-13-7-5(8(17)14-9)12-3(1-11-7)6(16)4(15)2-21-22(18,19)20/h4,6,15-16H,1-2H2,(H2,18,19,20)(H4,10,11,13,14,17)/p-2/t4-,6+/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
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        </annotation>
      </species>
      <species metaid="M_DIHYDROPTERIN__45__CH2OH__45__PP_c" id="M_DIHYDROPTERIN__45__CH2OH__45__PP_c" name="(7,8-dihydropterin-6-yl)methyl diphosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C7H8N5O8P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 352.1163</p>
            <p>smiles: Nc1nc2NCC(COP([O-])(=O)OP([O-])([O-])=O)=Nc2c(=O)[nH]1</p>
            <p>inchikey: FCQGJGLSOWZZON-UHFFFAOYSA-K</p>
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            <rdf:Description rdf:about="#M_DIHYDROPTERIN__45__CH2OH__45__PP_c">
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              </bqbiol:isVersionOf>
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        </annotation>
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      <species metaid="M_BCCP__45__monomers_c" id="M_BCCP__45__monomers_c" name="a [biotin-carboxyl-carrier protein monomer]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_2__45__KETO__45__3__45__METHYL__45__VALERATE_c" id="M_2__45__KETO__45__3__45__METHYL__45__VALERATE_c" name="(S)-3-methyl-2-oxopentanoate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 129.1344</p>
            <p>smiles: CC[C@H](C)C(=O)C([O-])=O</p>
            <p>inchikey: JVQYSWDUAOAHFM-BYPYZUCNSA-M</p>
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        </notes>
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            <rdf:Description rdf:about="#M_2__45__KETO__45__3__45__METHYL__45__VALERATE_c">
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
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        </annotation>
      </species>
      <species metaid="M_ILE_c" id="M_ILE_c" name="L-isoleucine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 131.1729</p>
            <p>smiles: CC[C@H](C)[C@H]([NH3+])C([O-])=O</p>
            <p>inchikey: AGPKZVBTJJNPAG-WHFBIAKZSA-N</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_ILE_c">
              <bqbiol:isVersionOf>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_LEU_c" id="M_LEU_c" name="L-leucine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H13NO2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 131.1729</p>
            <p>smiles: CC(C)C[C@H]([NH3+])C([O-])=O</p>
            <p>inchikey: ROHFNLRQFUQHCH-YFKPBYRVSA-N</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_LEU_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C6H13NO2/c1-4(2)3-5(7)6(8)9/h4-5H,3,7H2,1-2H3,(H,8,9)/t5-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_VAL_c" id="M_VAL_c" name="L-valine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 117.1463</p>
            <p>smiles: CC(C)[C@H]([NH3+])C([O-])=O</p>
            <p>inchikey: KZSNJWFQEVHDMF-BYPYZUCNSA-N</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_VAL_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C5H11NO2/c1-3(2)4(6)5(7)8/h3-4H,6H2,1-2H3,(H,7,8)/t4-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Lignoceroyl__45__ACPs_c" id="M_Lignoceroyl__45__ACPs_c" name="a lignoceroyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_R__45__3__45__hydroxycerotoyl__45__ACPs_c" id="M_R__45__3__45__hydroxycerotoyl__45__ACPs_c" name="a (3R)-3-hydroxycerotoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Trans__45__D2__45__hexacos__45__2__45__enoyl__45__ACPs_c" id="M_Trans__45__D2__45__hexacos__45__2__45__enoyl__45__ACPs_c" name="a trans-hexacos-2-enoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Cerotoyl__45__ACPs_c" id="M_Cerotoyl__45__ACPs_c" name="a cerotoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_IMIDAZOLE_ACETALDEHYDE_c" id="M_IMIDAZOLE_ACETALDEHYDE_c" name="imidazole acetaldehyde" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H6N2O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 110.1139</p>
            <p>smiles: O=CCc1c[nH]cn1</p>
            <p>inchikey: MQSRGWNVEZRLDK-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_IMIDAZOLE_ACETALDEHYDE_c">
              <bqbiol:isVersionOf>
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        </annotation>
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      <species metaid="M_4__45__IMIDAZOLEACETATE_c" id="M_4__45__IMIDAZOLEACETATE_c" name="4-imidazoleacetate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H5N2O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 125.1059</p>
            <p>smiles: [O-]C(=O)Cc1c[nH]cn1</p>
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        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_4__45__IMIDAZOLEACETATE_c">
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        </annotation>
      </species>
      <species metaid="M_Nucleoside__45__Diphosphates_c" id="M_Nucleoside__45__Diphosphates_c" name="a nucleoside diphosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C5H8O10P2R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: O[C@@H]1[C@H](O)[C@@H](COP([O-])(=O)OP([O-])([O-])=O)O[C@H]1[*]</p>
          </body>
        </notes>
      </species>
      <species metaid="M_PPI_m" id="M_PPI_m" name="diphosphate" compartment="m" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="HO7P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 174.9529</p>
            <p>smiles: OP([O-])(=O)OP([O-])([O-])=O</p>
            <p>inchikey: XPPKVPWEQAFLFU-UHFFFAOYSA-K</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_PPI_m">
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                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/H4O7P2/c1-8(2,3)7-9(4,5)6/h(H2,1,2,3)(H2,4,5,6)/p-3"/>
                </rdf:Bag>
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          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_PPI_p" id="M_PPI_p" name="diphosphate" compartment="p" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="HO7P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 174.9529</p>
            <p>smiles: OP([O-])(=O)OP([O-])([O-])=O</p>
            <p>inchikey: XPPKVPWEQAFLFU-UHFFFAOYSA-K</p>
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        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_PPI_p">
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                </rdf:Bag>
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      </species>
      <species metaid="M_NITRATE_v" id="M_NITRATE_v" name="nitrate" compartment="v" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="NO3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 62.0054</p>
            <p>smiles: [O-][N+]([O-])=O</p>
            <p>inchikey: NHNBFGGVMKEFGY-UHFFFAOYSA-N</p>
          </body>
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            <rdf:Description rdf:about="#M_NITRATE_v">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/NO3/c2-1(3)4/q-1"/>
                </rdf:Bag>
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        </annotation>
      </species>
      <species metaid="M_PPI_x" id="M_PPI_x" name="diphosphate" compartment="x" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="HO7P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 174.9529</p>
            <p>smiles: OP([O-])(=O)OP([O-])([O-])=O</p>
            <p>inchikey: XPPKVPWEQAFLFU-UHFFFAOYSA-K</p>
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        </notes>
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            <rdf:Description rdf:about="#M_PPI_x">
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        </annotation>
      </species>
      <species metaid="M_CPD__45__6991_c" id="M_CPD__45__6991_c" name="(2S)-pinocembrin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H12O4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 256.2534</p>
            <p>smiles: Oc1cc(O)c2C(=O)C[C@H](Oc2c1)c1ccccc1</p>
            <p>inchikey: URFCJEUYXNAHFI-ZDUSSCGKSA-N</p>
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        </notes>
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            <rdf:Description rdf:about="#M_CPD__45__6991_c">
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        <notes>
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            <p>mass: 272.2528</p>
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            <p>mass: 447.421</p>
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        <notes>
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        <notes>
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        <notes>
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        <notes>
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            <p>mass: 1118.03</p>
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            <p>mass: 1053.988</p>
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            <p>mass: 1023.919</p>
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            <rdf:Description rdf:about="#M_LINOLENOYL__45__COA_c">
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        </annotation>
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      <species metaid="M_CPD__45__8120_c" id="M_CPD__45__8120_c" name="di-homo-&amp;gamma;-linolenate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 305.4754</p>
            <p>smiles: CCCCC\C=C/C\C=C/C\C=C/CCCCCCC([O-])=O</p>
            <p>inchikey: HOBAELRKJCKHQD-QNEBEIHSSA-M</p>
          </body>
        </notes>
        <annotation>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1089.977</p>
            <p>smiles: CC\C=C/C\C=C/C\C=C/C\C=C/C\C=C/CCCC(=O)CC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: SLYKKQSPRFJDAF-HVGANWHPSA-J</p>
          </body>
        </notes>
        <annotation>
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      <species metaid="M_CPD__45__14018_c" id="M_CPD__45__14018_c" name="icosapentaenoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H60N7O17P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1047.94</p>
            <p>smiles: CC\C=C/C\C=C/C\C=C/C\C=C/C\C=C/CCCC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
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        </notes>
        <annotation>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1091.993</p>
            <p>smiles: CC\C=C/C\C=C/C\C=C/C\C=C/C\C=C/CCC[C@@H](O)CC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: KIDYDCLNVXONEF-PYBSMVOOSA-J</p>
          </body>
        </notes>
        <annotation>
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        </annotation>
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      <species metaid="M_Dihydro__45__Lipoyl__45__Proteins_c" id="M_Dihydro__45__Lipoyl__45__Proteins_c" name="a [lipoyl-carrier protein] N6-dihydrolipoyl-L-lysine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_PRENAL_c" id="M_PRENAL_c" name="3-methyl-2-butenal" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H8O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 84.1164</p>
            <p>smiles: CC(C)=CC=O</p>
            <p>inchikey: SEPQTYODOKLVSB-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_PRENAL_c">
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                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C5H8O/c1-5(2)3-4-6/h3-4H,1-2H3"/>
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      <species metaid="M_ATP_x" id="M_ATP_x" name="ATP" compartment="x" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O13P3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 503.1515</p>
            <p>smiles: Nc1ncnc2n(cnc12)[C@@H]1O[C@H](COP([O-])(=O)OP([O-])(=O)OP([O-])([O-])=O)[C@@H](O)[C@H]1O</p>
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        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_ATP_x">
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              </bqbiol:isVersionOf>
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      </species>
      <species metaid="M_S__45__PRENYL__45__L__45__CYSTEINE_c" id="M_S__45__PRENYL__45__L__45__CYSTEINE_c" name="S-prenyl-L-cysteine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15NO2S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 189.275</p>
            <p>smiles: CC(C)=CCSC[C@H]([NH3+])C([O-])=O</p>
            <p>inchikey: ULHWZNASVJIOEM-ZETCQYMHSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_S__45__PRENYL__45__L__45__CYSTEINE_c">
              <bqbiol:isVersionOf>
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                </rdf:Bag>
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      </species>
      <species metaid="M_Protein__45__L__45__methionine__45__R__45__S__45__oxides_c" id="M_Protein__45__L__45__methionine__45__R__45__S__45__oxides_c" name="a protein-L-methionine-(R)-S-oxide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10N2O3SR2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: C[S@@](=O)CC[C@H](NC([*])=O)C(=O)N[*]</p>
          </body>
        </notes>
      </species>
      <species metaid="M_Pectin_c" id="M_Pectin_c" name="a pectin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__12980_c" id="M_CPD__45__12980_c" name="an oligosaccharide with 4-deoxy-6-O-methyl-&amp;alpha;-D-galact-4-enuronate end" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Protein__45__L__45__methionine_c" id="M_Protein__45__L__45__methionine_c" name="a [protein]-L-methionine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NOSR2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CSCC[C@H](N-*)C(-*)=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_CPD__45__8990_c" id="M_CPD__45__8990_c" name="L-methionine-(R)-S-oxide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 165.211</p>
            <p>smiles: C[S@@](=O)CC[C@H]([NH3+])C([O-])=O</p>
            <p>inchikey: QEFRNWWLZKMPFJ-ZXPFJRLXSA-N</p>
          </body>
        </notes>
        <annotation>
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                </rdf:Bag>
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        </annotation>
      </species>
      <species metaid="M_P3I_c" id="M_P3I_c" name="PPPi" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="O10P3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 252.918</p>
            <p>smiles: [O-]P([O-])(=O)OP([O-])(=O)OP([O-])([O-])=O</p>
            <p>inchikey: UNXRWKVEANCORM-UHFFFAOYSA-I</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_P3I_c">
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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      <species metaid="M_Xanthine__45__dehydrogenases_c" id="M_Xanthine__45__dehydrogenases_c" name="a xanthine dehydrogenase" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Xanthine__45__oxidases_c" id="M_Xanthine__45__oxidases_c" name="a xanthine oxidase" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_OXIDIZED__45__GLUTATHIONE_c" id="M_OXIDIZED__45__GLUTATHIONE_c" name="glutathione disulfide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H30N6O12S2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 610.616</p>
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            <p>inchikey: YPZRWBKMTBYPTK-BJDJZHNGSA-L</p>
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        </notes>
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            <rdf:Description rdf:about="#M_OXIDIZED__45__GLUTATHIONE_c">
              <bqbiol:isVersionOf>
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                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C20H32N6O12S2/c21-9(19(35)36)1-3-13(27)25-11(17(33)23-5-15(29)30)7-39-40-8-12(18(34)24-6-16(31)32)26-14(28)4-2-10(22)20(37)38/h9-12H,1-8,21-22H2,(H,23,33)(H,24,34)(H,25,27)(H,26,28)(H,29,30)(H,31,32)(H,35,36)(H,37,38)/p-2/t9-,10-,11-,12-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_6__45__PYRUVOYL__45__5678__45__TETRAHYDROPTERIN_c" id="M_6__45__PYRUVOYL__45__5678__45__TETRAHYDROPTERIN_c" name="6-pyruvoyl tetrahydropterin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11N5O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 237.2153</p>
            <p>smiles: CC(=O)C(=O)C1CNc2nc(N)[nH]c(=O)c2N1</p>
            <p>inchikey: WBJZXBUVECZHCE-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_6__45__PYRUVOYL__45__5678__45__TETRAHYDROPTERIN_c">
              <bqbiol:isVersionOf>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_3__45__terminal__45__unsaturated__45__sugars_c" id="M_3__45__terminal__45__unsaturated__45__sugars_c" name="a 3&apos;-terminal unsaturated sugar" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_THZ__45__P_c" id="M_THZ__45__P_c" name="4-methyl-5-(2-phosphooxyethyl)thiazole" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8NO4PS">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 221.172</p>
            <p>smiles: Cc1ncsc1CCOP([O-])([O-])=O</p>
            <p>inchikey: OCYMERZCMYJQQO-UHFFFAOYSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_THZ__45__P_c">
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                </rdf:Bag>
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        </annotation>
      </species>
      <species metaid="M_DNA__45__containing__45__abasic__45__Sites_c" id="M_DNA__45__containing__45__abasic__45__Sites_c" name="a DNA containing an apurinic/apyrimidinic site" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_5__45__Phosphopolynucleotides_c" id="M_5__45__Phosphopolynucleotides_c" name="a 5&apos;-phosphopolynucleotide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/>
      <species metaid="M_THIAMINE__45__P_c" id="M_THIAMINE__45__P_c" name="thiamine phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H16N4O4PS">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 343.319</p>
            <p>smiles: Cc1c(CCOP([O-])([O-])=O)sc[n+]1Cc1cnc(C)nc1N</p>
            <p>inchikey: HZSAJDVWZRBGIF-UHFFFAOYSA-M</p>
          </body>
        </notes>
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            <rdf:Description rdf:about="#M_THIAMINE__45__P_c">
              <bqbiol:isVersionOf>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_AMINO__45__HYDROXYMETHYL__45__METHYLPYRIMIDINE__45__PP_c" id="M_AMINO__45__HYDROXYMETHYL__45__METHYLPYRIMIDINE__45__PP_c" name="4-amino-2-methyl-5-(diphosphomethyl)pyrimidine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H8N3O7P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 296.0928</p>
            <p>smiles: Cc1ncc(COP([O-])(=O)OP([O-])([O-])=O)c(N)n1</p>
            <p>inchikey: AGQJQCFEPUVXNK-UHFFFAOYSA-K</p>
          </body>
        </notes>
        <annotation>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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      <species metaid="M_C__45__DI__45__GMP_c" id="M_C__45__DI__45__GMP_c" name="cyclic di-3&apos;,5&apos;-guanylate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H22N10O14P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 688.3959</p>
            <p>smiles: Nc1nc2n(cnc2c(=O)[nH]1)[C@@H]1O[C@@H]2COP([O-])(=O)O[C@@H]3[C@@H](COP([O-])(=O)O[C@H]2[C@H]1O)O[C@H]([C@@H]3O)n1cnc2c1nc(N)[nH]c2=O</p>
            <p>inchikey: PKFDLKSEZWEFGL-MHARETSRSA-L</p>
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        </notes>
        <annotation>
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                </rdf:Bag>
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        </annotation>
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      <species metaid="M_CPD0__45__1162_c" id="M_CPD0__45__1162_c" name="(2E,5Z)-tetradecenoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H54N7O17P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 969.828</p>
            <p>smiles: CCCCCCCC\C=C/C\C=C\C(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: JVEFYXPCQBMMAA-ZMLWRGBOSA-J</p>
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        </notes>
        <annotation>
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        </annotation>
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      <species metaid="M_CPD0__45__1163_c" id="M_CPD0__45__1163_c" name="(S)-3-hydroxy-(5Z)-tetradecenoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O18P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 987.844</p>
            <p>smiles: CCCCCCCC\C=C/C[C@H](O)CC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: KJJPUIFALMAQPF-SUAKZGBESA-J</p>
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        </notes>
        <annotation>
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      <species metaid="M_3__45__BETA__45__D__45__GLUCOSYLGLUCOSE_c" id="M_3__45__BETA__45__D__45__GLUCOSYLGLUCOSE_c" name="nigerose" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H22O11">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 342.2965</p>
            <p>smiles: OC[C@H]1O[C@H](O[C@@H]2[C@@H](O)C(O)O[C@H](CO)[C@H]2O)[C@H](O)[C@@H](O)[C@@H]1O</p>
            <p>inchikey: QIGJYVCQYDKYDW-NSYYTRPSSA-N</p>
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      <species metaid="M_URACIL_c" id="M_URACIL_c" name="uracil" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H4N2O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 112.0868</p>
            <p>smiles: O=c1cc[nH]c(=O)[nH]1</p>
            <p>inchikey: ISAKRJDGNUQOIC-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_URACIL_c">
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                </rdf:Bag>
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      </species>
      <species metaid="M_PSEUDOURIDINE__45__5__45__P_c" id="M_PSEUDOURIDINE__45__5__45__P_c" name="pseudouridine 5&apos;-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H11N2O9P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 322.1665</p>
            <p>smiles: O[C@H]1[C@@H](O)[C@@H](O[C@@H]1COP([O-])([O-])=O)c1c[nH]c(=O)[nH]c1=O</p>
            <p>inchikey: MOBMOJGXNHLLIR-GBNDHIKLSA-L</p>
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        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_PSEUDOURIDINE__45__5__45__P_c">
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                </rdf:Bag>
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      </species>
      <species metaid="M_CPD__45__15317_c" id="M_CPD__45__15317_c" name="D-ribofuranose 5-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O8P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 228.095</p>
            <p>smiles: OC1O[C@H](COP([O-])([O-])=O)[C@@H](O)[C@H]1O</p>
            <p>inchikey: KTVPXOYAKDPRHY-SOOFDHNKSA-L</p>
          </body>
        </notes>
        <annotation>
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            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_7__45__8__45__DIHYDROPTEROATE_c" id="M_7__45__8__45__DIHYDROPTEROATE_c" name="7,8-dihydropteroate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H13N6O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 313.292</p>
            <p>smiles: Nc1nc2NCC(CNc3ccc(cc3)C([O-])=O)=Nc2c(=O)[nH]1</p>
            <p>inchikey: WBFYVDCHGVNRBH-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_7__45__8__45__DIHYDROPTEROATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_P__45__AMINO__45__BENZOATE_c" id="M_P__45__AMINO__45__BENZOATE_c" name="4-aminobenzoate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H6NO2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 136.1286</p>
            <p>smiles: Nc1ccc(cc1)C([O-])=O</p>
            <p>inchikey: ALYNCZNDIQEVRV-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_P__45__AMINO__45__BENZOATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C7H7NO2/c8-6-3-1-5(2-4-6)7(9)10/h1-4H,8H2,(H,9,10)/p-1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
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        </annotation>
      </species>
      <species metaid="M_COPROPORPHYRINOGEN_III_c" id="M_COPROPORPHYRINOGEN_III_c" name="coproporphyrinogen III" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C36H40N4O8">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 656.727</p>
            <p>smiles: Cc1c2Cc3[nH]c(Cc4[nH]c(Cc5[nH]c(Cc([nH]2)c1CCC([O-])=O)c(C)c5CCC([O-])=O)c(C)c4CCC([O-])=O)c(CCC([O-])=O)c3C</p>
            <p>inchikey: NIUVHXTXUXOFEB-UHFFFAOYSA-J</p>
          </body>
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        <annotation>
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              <bqbiol:isVersionOf>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_PROTOPORPHYRINOGEN_c" id="M_PROTOPORPHYRINOGEN_c" name="protoporphyrinogen IX" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C34H38N4O4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 566.691</p>
            <p>smiles: Cc1c2Cc3[nH]c(Cc4[nH]c(Cc5[nH]c(Cc([nH]2)c1CCC([O-])=O)c(CCC([O-])=O)c5C)c(C=C)c4C)c(C=C)c3C</p>
            <p>inchikey: UHSGPDMIQQYNAX-UHFFFAOYSA-L</p>
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        <annotation>
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            <rdf:Description rdf:about="#M_PROTOPORPHYRINOGEN_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C34H40N4O4/c1-7-21-17(3)25-13-26-19(5)23(9-11-33(39)40)31(37-26)16-32-24(10-12-34(41)42)20(6)28(38-32)15-30-22(8-2)18(4)27(36-30)14-29(21)35-25/h7-8,35-38H,1-2,9-16H2,3-6H3,(H,39,40)(H,41,42)/p-2"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_L__45__THYROXINE_c" id="M_L__45__THYROXINE_c" name="L-thyroxine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H11I4NO4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 776.87</p>
            <p>smiles: [NH3+]C(Cc1cc(I)c(Oc2cc(I)c(O)c(I)c2)c(I)c1)C([O-])=O</p>
            <p>inchikey: XUIIKFGFIJCVMT-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_L__45__THYROXINE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C15H11I4NO4/c16-8-4-7(5-9(17)13(8)21)24-14-10(18)1-6(2-11(14)19)3-12(20)15(22)23/h1-2,4-5,12,21H,3,20H2,(H,22,23)"/>
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          </rdf:RDF>
        </annotation>
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      <species metaid="M_CPD__45__11407_c" id="M_CPD__45__11407_c" name="thyroxine sulfate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H10I4NO7S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 855.926</p>
            <p>smiles: [NH3+]C(Cc1cc(I)c(Oc2cc(I)c(OS([O-])(=O)=O)c(I)c2)c(I)c1)C([O-])=O</p>
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        </notes>
        <annotation>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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        </annotation>
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      <species metaid="M_CPD__45__11408_c" id="M_CPD__45__11408_c" name="triiodothyronine sulfate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H11I3NO7S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 730.029</p>
            <p>smiles: [NH3+][C@@H](Cc1cc(I)c(Oc2ccc(OS([O-])(=O)=O)c(I)c2)c(I)c1)C([O-])=O</p>
            <p>inchikey: XBQYQXVJBNDCGY-LBPRGKRZSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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              </bqbiol:isVersionOf>
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        </annotation>
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      <species metaid="M_LIOTHYRONINE_c" id="M_LIOTHYRONINE_c" name="3,5,3&apos;-triiodo-L-thyronine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H12I3NO4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 650.9735</p>
            <p>smiles: [NH3+][C@@H](Cc1cc(I)c(Oc2ccc(O)c(I)c2)c(I)c1)C([O-])=O</p>
            <p>inchikey: AUYYCJSJGJYCDS-LBPRGKRZSA-N</p>
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        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_LIOTHYRONINE_c">
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        </annotation>
      </species>
      <species metaid="M_COPROPORPHYRINOGEN_I_c" id="M_COPROPORPHYRINOGEN_I_c" name="coproporphyrinogen I" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C36H40N4O8">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 656.727</p>
            <p>smiles: Cc1c2Cc3[nH]c(Cc4[nH]c(Cc5[nH]c(Cc([nH]2)c1CCC([O-])=O)c(C)c5CCC([O-])=O)c(C)c4CCC([O-])=O)c(C)c3CCC([O-])=O</p>
            <p>inchikey: WIUGGJKHYQIGNH-UHFFFAOYSA-J</p>
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        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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        </annotation>
      </species>
      <species metaid="M_CPD__45__11444_c" id="M_CPD__45__11444_c" name="uroporphyrinogen-I" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C40H36N4O16">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 828.7354</p>
            <p>smiles: [O-]C(=O)CCc1c2Cc3[nH]c(Cc4[nH]c(Cc5[nH]c(Cc([nH]2)c1CC([O-])=O)c(CCC([O-])=O)c5CC([O-])=O)c(CCC([O-])=O)c4CC([O-])=O)c(CCC([O-])=O)c3CC([O-])=O</p>
            <p>inchikey: QTTNOSKSLATGQB-UHFFFAOYSA-F</p>
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        </notes>
        <annotation>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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      </species>
      <species metaid="M_Cis__45__Delta5__45__dodecenoyl__45__ACPs_c" id="M_Cis__45__Delta5__45__dodecenoyl__45__ACPs_c" name="a (5Z)-dodec-5-enoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_MALONYL__45__ACP_c" id="M_MALONYL__45__ACP_c" name="a malonyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H2O3SR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [O-]C(=O)CC(=O)S[*]</p>
          </body>
        </notes>
      </species>
      <species metaid="M_3__45__oxo__45__cis__45__D7__45__tetradecenoyl__45__ACPs_c" id="M_3__45__oxo__45__cis__45__D7__45__tetradecenoyl__45__ACPs_c" name="a 3-oxo-cis-&amp;Delta;7-tetradecenoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_O__45__SUCCINYL__45__L__45__HOMOSERINE_c" id="M_O__45__SUCCINYL__45__L__45__HOMOSERINE_c" name="O-succinyl-L-homoserine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H12NO6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 218.1845</p>
            <p>smiles: [NH3+][C@@H](CCOC(=O)CCC([O-])=O)C([O-])=O</p>
            <p>inchikey: GNISQJGXJIDKDJ-YFKPBYRVSA-M</p>
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        <annotation>
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            <rdf:Description rdf:about="#M_O__45__SUCCINYL__45__L__45__HOMOSERINE_c">
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          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_COBINAMIDE_c" id="M_COBINAMIDE_c" name="cobinamide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C48H72CoN11O8">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 990.0874</p>
            <p>smiles: [H][C@]12[C@H](CC(N)=O)[C@@](C)(CCC(=O)NC[C@@H](C)O)\C(N1[Co])=C(C)\C1=N\C(=C/C3=N/C(=C(C)\C4=N[C@]2(C)[C@@](C)(CC(N)=O)[C@@H]4CCC(N)=O)/[C@@](C)(CC(N)=O)[C@@H]3CCC(N)=O)\C(C)(C)[C@@H]1CCC(N)=O</p>
            <p>inchikey: XQRJFEVDQXEIAX-JFYQDRLCSA-M</p>
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        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_COBINAMIDE_c">
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      </species>
      <species metaid="M_ADENOSYLCOBINAMIDE_c" id="M_ADENOSYLCOBINAMIDE_c" name="adenosylcobinamide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C58H85CoN16O11">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1241.3282</p>
            <p>smiles: [Co++].[H][C@]1([CH2])O[C@@]([H])(n2cnc3c(N)ncnc23)[C@]([H])(O)[C@]1([H])O.[H][C@](C)(O)CN=C(O)CC[C@@]1(C)C2=NC([H])([C@]1([H])CC(O)=N)[C@]1(C)NC(=C(C)C3=NC(=CC4=NC(=C2C)[C@@]([H])(CCC(O)=[NH2+])C4(C)C)[C@@]([H])(CCC([NH-])=O)[C@]3(C)CC(O)=N)[C@@]([H])(CCC(O)=N)[C@]1(C)CC(O)=N</p>
            <p>inchikey: KQXSPGAEBZWHMC-OCUXTBADSA-N</p>
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        </notes>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 877.647</p>
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            <p>inchikey: VAAHKRMGOFIORX-IKTBLOROSA-J</p>
          </body>
        </notes>
        <annotation>
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      <species metaid="M_K__45__HEXANOYL__45__COA_c" id="M_K__45__HEXANOYL__45__COA_c" name="3-oxohexanoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C27H40N7O18P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 875.631</p>
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        </notes>
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      <species metaid="M_CPD__45__13524_c" id="M_CPD__45__13524_c" name="all-trans-retinol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H30O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 286.4516</p>
            <p>smiles: C\C(=C/CO)\C=C\C=C(/C)\C=C\C1=C(C)CCCC1(C)C</p>
            <p>inchikey: FPIPGXGPPPQFEQ-OVSJKPMPSA-N</p>
          </body>
        </notes>
        <annotation>
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      <species metaid="M_All__45__trans__45__Retinyl__45__Esters_c" id="M_All__45__trans__45__Retinyl__45__Esters_c" name="an all-trans-retinyl ester" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C21H29O2R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: C\C(=C/COC([*])=O)\C=C\C=C(/C)\C=C\C1=C(C)CCCC1(C)C</p>
          </body>
        </notes>
      </species>
      <species metaid="M_Dietary__45__retinyl__45__esters_c" id="M_Dietary__45__retinyl__45__esters_c" name="a dietary all-trans-retinyl ester" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_2__45__ALPHA__45__HYDROXYETHYL__45__THPP_c" id="M_2__45__ALPHA__45__HYDROXYETHYL__45__THPP_c" name="2-(&amp;alpha;-hydroxyethyl)thiamine diphosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C14H20N4O8P2S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 466.344</p>
            <p>smiles: CC(O)c1sc(CCOP([O-])(=O)OP([O-])([O-])=O)c(C)[n+]1Cc1cnc(C)nc1N</p>
            <p>inchikey: RRUVJGASJONMDY-UHFFFAOYSA-L</p>
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        </notes>
        <annotation>
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      <species metaid="M_ADENOSYL__45__P4_c" id="M_ADENOSYL__45__P4_c" name="5&apos;,5&apos;&apos;&apos;-diadenosine tetraphosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C20H24N10O19P4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 832.3574</p>
            <p>smiles: Nc1ncnc2n(cnc12)[C@@H]1O[C@H](COP([O-])(=O)OP([O-])(=O)OP([O-])(=O)OP([O-])(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)n2cnc3c(N)ncnc23)[C@@H](O)[C@H]1O</p>
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      <species metaid="M_CIT_c" id="M_CIT_c" name="citrate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H5O7">
        <notes>
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            <p>mass: 189.1013</p>
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            <p>inchikey: KRKNYBCHXYNGOX-UHFFFAOYSA-K</p>
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      <species metaid="M_Pyruvate__45__dehydrogenase__45__acetylDHlipoyl_c" id="M_Pyruvate__45__dehydrogenase__45__acetylDHlipoyl_c" name="a [pyruvate dehydrogenase E2 protein] N6-S-acetyldihydrolipoyl-L-lysine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H18O2S2R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      <species metaid="M_Pyruvate__45__dehydrogenase__45__dihydrolipoate_c" id="M_Pyruvate__45__dehydrogenase__45__dihydrolipoate_c" name="a [pyruvate dehydrogenase E2 protein] N6-dihydrolipoyl-L-lysine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H16OS2R">
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          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      </species>
      <species metaid="M_CPD__45__16551_c" id="M_CPD__45__16551_c" name="&amp;beta;-D-ribose 5-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O8P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 228.095</p>
            <p>smiles: O[C@@H]1O[C@H](COP([O-])([O-])=O)[C@@H](O)[C@H]1O</p>
            <p>inchikey: KTVPXOYAKDPRHY-TXICZTDVSA-L</p>
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      <species metaid="M_CPD__45__15895_c" id="M_CPD__45__15895_c" name="keto-D-ribose 5-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O8P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 228.095</p>
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            <p>inchikey: PPQRONHOSHZGFQ-LMVFSUKVSA-L</p>
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      <species metaid="M_Pyruvate__45__dehydrogenase__45__lipoate_c" id="M_Pyruvate__45__dehydrogenase__45__lipoate_c" name="a [pyruvate dehydrogenase E2 protein] N6-lipoyl-L-lysine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H14OS2R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      </species>
      <species metaid="M_SUC__45__COA_c" id="M_SUC__45__COA_c" name="succinyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C25H35N7O19P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 862.57</p>
            <p>smiles: CC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12)[C@@H](O)C(=O)NCCC(=O)NCCSC(=O)CCC([O-])=O</p>
            <p>inchikey: VNOYUJKHFWYWIR-ITIYDSSPSA-I</p>
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        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_SUC__45__COA_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C25H40N7O19P3S/c1-25(2,20(38)23(39)28-6-5-14(33)27-7-8-55-16(36)4-3-15(34)35)10-48-54(45,46)51-53(43,44)47-9-13-19(50-52(40,41)42)18(37)24(49-13)32-12-31-17-21(26)29-11-30-22(17)32/h11-13,18-20,24,37-38H,3-10H2,1-2H3,(H,27,33)(H,28,39)(H,34,35)(H,43,44)(H,45,46)(H2,26,29,30)(H2,40,41,42)/p-5/t13-,18-,19-,20+,24-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__11281_c" id="M_CPD__45__11281_c" name="S-sulfanylglutathione" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H16N3O6S2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 338.381</p>
            <p>smiles: [NH3+][C@@H](CCC(=O)N[C@@H](CSS)C(=O)NCC([O-])=O)C([O-])=O</p>
            <p>inchikey: QBOLVLBSUGJHGB-WDSKDSINSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__11281_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C10H17N3O6S2/c11-5(10(18)19)1-2-7(14)13-6(4-21-20)9(17)12-3-8(15)16/h5-6,20H,1-4,11H2,(H,12,17)(H,13,14)(H,15,16)(H,18,19)/p-1/t5-,6-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Oxo__45__glutarate__45__dehydro__45__suc__45__DH__45__lipoyl_c" id="M_Oxo__45__glutarate__45__dehydro__45__suc__45__DH__45__lipoyl_c" name="a [2-oxoglutarate dehydrogenase E2 protein] N6-S-succinyldihydrolipoyl-L-lysine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H19O4S2R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Oxo__45__glutarate__45__dehydrogenase__45__DH__45__lipoyl_c" id="M_Oxo__45__glutarate__45__dehydrogenase__45__DH__45__lipoyl_c" name="a [2-oxoglutarate dehydrogenase E2 protein] N6-dihydrolipoyl-L-lysine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15OS2R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__9612_c" id="M_CPD__45__9612_c" name="caldariellaquinone" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H66O2S2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 631.07</p>
            <p>smiles: CSC1=C(CCC(C)CCCC(C)CCCC(C)CCCC(C)CCCC(C)CCCC(C)C)C(=O)c2sccc2C1=O</p>
            <p>inchikey: GHRWXPXOBGRSHG-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__9612_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C39H66O2S2/c1-28(2)14-9-15-29(3)16-10-17-30(4)18-11-19-31(5)20-12-21-32(6)22-13-23-33(7)24-25-34-37(41)39-35(26-27-43-39)36(40)38(34)42-8/h26-33H,9-25H2,1-8H3"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__15301_c" id="M_CPD__45__15301_c" name="caldariellaquinol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C39H68O2S2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 633.086</p>
            <p>smiles: CSc1c(CCC(C)CCCC(C)CCCC(C)CCCC(C)CCCC(C)CCCC(C)C)c(O)c2sccc2c1O</p>
            <p>inchikey: UVCQOKDZGIAHDG-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__15301_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C39H68O2S2/c1-28(2)14-9-15-29(3)16-10-17-30(4)18-11-19-31(5)20-12-21-32(6)22-13-23-33(7)24-25-34-37(41)39-35(26-27-43-39)36(40)38(34)42-8/h26-33,40-41H,9-25H2,1-8H3"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_tRNA__45__Dihydrouridines_c" id="M_tRNA__45__Dihydrouridines_c" name="a 5,6-dihydrouridine in tRNA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_tRNA__45__uridines_c" id="M_tRNA__45__uridines_c" name="a uridine in tRNA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Plastoquinols_c" id="M_Plastoquinols_c" name="a plastoquinol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_PLASTOQUINONE_c" id="M_PLASTOQUINONE_c" name="a plastoquinone" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_tRNA__45__with__45__7__45__aminomethyl__45__7__45__deazaguanine_c" id="M_tRNA__45__with__45__7__45__aminomethyl__45__7__45__deazaguanine_c" name="a 7-aminomethyl-7-deazaguanosine34 in tRNA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_7__45__AMINOMETHYL__45__7__45__DEAZAGUANINE_c" id="M_7__45__AMINOMETHYL__45__7__45__DEAZAGUANINE_c" name="preQ1" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C7H10N5O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 180.1867</p>
            <p>smiles: Nc1nc2[nH]cc(C[NH3+])c2c(=O)[nH]1</p>
            <p>inchikey: MEYMBLGOKYDGLZ-UHFFFAOYSA-O</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_7__45__AMINOMETHYL__45__7__45__DEAZAGUANINE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C7H9N5O/c8-1-3-2-10-5-4(3)6(13)12-7(9)11-5/h2H,1,8H2,(H4,9,10,11,12,13)/p+1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Guanine34__45__in__45__tRNAs_c" id="M_Guanine34__45__in__45__tRNAs_c" name="a guanine34 in tRNA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Light_c" id="M_Light_c" name="h&amp;nu;" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: *</p>
          </body>
        </notes>
      </species>
      <species metaid="M_23__45__DIPHOSPHOGLYCERATE_c" id="M_23__45__DIPHOSPHOGLYCERATE_c" name="2,3-diphospho-D-glycerate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C3H3O10P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 261.0002</p>
            <p>smiles: [O-]C(=O)[C@@H](COP([O-])([O-])=O)OP([O-])([O-])=O</p>
            <p>inchikey: XOHUEYCVLUUEJJ-UWTATZPHSA-I</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_23__45__DIPHOSPHOGLYCERATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C3H8O10P2/c4-3(5)2(13-15(9,10)11)1-12-14(6,7)8/h2H,1H2,(H,4,5)(H2,6,7,8)(H2,9,10,11)/p-5/t2-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__16758_c" id="M_CPD__45__16758_c" name="2/3-phospho-D-glycerate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H3O4R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [O-]C(=O)[C@@H](CO*)O*</p>
          </body>
        </notes>
      </species>
      <species metaid="M_D__45__SEDOHEPTULOSE__45__1__45__7__45__P2_c" id="M_D__45__SEDOHEPTULOSE__45__1__45__7__45__P2_c" name="D-sedoheptulose-1,7-bisphosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C7H12O13P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 366.1121</p>
            <p>smiles: O[C@H](COP([O-])([O-])=O)[C@@H](O)[C@@H](O)[C@H](O)C(=O)COP([O-])([O-])=O</p>
            <p>inchikey: OKHXOUGRECCASI-SHUUEZRQSA-J</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_D__45__SEDOHEPTULOSE__45__1__45__7__45__P2_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C7H16O13P2/c8-3(1-19-21(13,14)15)5(10)7(12)6(11)4(9)2-20-22(16,17)18/h3,5-8,10-12H,1-2H2,(H2,13,14,15)(H2,16,17,18)/p-4/t3-,5-,6-,7-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_DIHYDROXY__45__ACETONE__45__PHOSPHATE_c" id="M_DIHYDROXY__45__ACETONE__45__PHOSPHATE_c" name="glycerone phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H5O6P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 168.0431</p>
            <p>smiles: OCC(=O)COP([O-])([O-])=O</p>
            <p>inchikey: GNGACRATGGDKBX-UHFFFAOYSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_DIHYDROXY__45__ACETONE__45__PHOSPHATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C3H7O6P/c4-1-3(5)2-9-10(6,7)8/h4H,1-2H2,(H2,6,7,8)/p-2"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_GLYCOLLATE_c" id="M_GLYCOLLATE_c" name="glycolate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H3O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 75.044</p>
            <p>smiles: OCC([O-])=O</p>
            <p>inchikey: AEMRFAOFKBGASW-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_GLYCOLLATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C2H4O3/c3-1-2(4)5/h3H,1H2,(H,4,5)/p-1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_GLYOX_c" id="M_GLYOX_c" name="glyoxylate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2HO3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 73.0281</p>
            <p>smiles: [H]C(=O)C([O-])=O</p>
            <p>inchikey: HHLFWLYXYJOTON-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_GLYOX_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C2H2O3/c3-1-2(4)5/h1H,(H,4,5)/p-1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Glycerophosphodiesters_c" id="M_Glycerophosphodiesters_c" name="a glycerophosphodiester" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H7O6PR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: OCC(O)COP([O-])(=O)O[*]</p>
          </body>
        </notes>
      </species>
      <species metaid="M_SER__45__tRNAs_c" id="M_SER__45__tRNAs_c" name="a tRNAser" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_LINAMARIN_c" id="M_LINAMARIN_c" name="linamarin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H17NO6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 247.2451</p>
            <p>smiles: CC(C)(O[C@@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1O)C#N</p>
            <p>inchikey: QLTCHMYAEJEXBT-ZEBDFXRSSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_LINAMARIN_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C10H17NO6/c1-10(2,4-11)17-9-8(15)7(14)6(13)5(3-12)16-9/h5-9,12-15H,3H2,1-2H3/t5-,6-,7+,8-,9+/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_1__45__3__45__beta__45__D__45__Glucans_c" id="M_1__45__3__45__beta__45__D__45__Glucans_c" name="a 1,3-&amp;beta;-D-glucan" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_2__45__HYDROXY__45__2__45__METHYLPROPANENITRILE_c" id="M_2__45__HYDROXY__45__2__45__METHYLPROPANENITRILE_c" name="acetone cyanohydrin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7NO">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 85.1045</p>
            <p>smiles: CC(C)(O)C#N</p>
            <p>inchikey: MWFMGBPGAXYFAR-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_2__45__HYDROXY__45__2__45__METHYLPROPANENITRILE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C4H7NO/c1-4(2,6)3-5/h6H,1-2H3"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__5161_c" id="M_CPD__45__5161_c" name="a (mannosyl)2-(N-acetylglucosaminyl)2-diphosphodolichol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Beta__45__D__45__Glucans_c" id="M_Beta__45__D__45__Glucans_c" name="a &amp;beta;-D glucan" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__5162_c" id="M_CPD__45__5162_c" name="a (mannosyl)3-(N-acetylglucosaminyl)2-diphosphodolichol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C114H188N2O32P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 2160.6553</p>
            <p>smiles: CC(CCOP([O-])(=O)OP([O-])(=O)O[C@H]1O[C@H](CO)[C@@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O)[C@@H](O)[C@H](O[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O)[C@@H]3O)[C@H](O)[C@H]2NC(C)=O)[C@H](O)[C@H]1NC(C)=O)CC\C=C(\C)CC\C=C(\C)CC\C=C(\C)CC\C=C(\C)CC\C=C(\C)CC\C=C(\C)CC\C=C(\C)CC\C=C(\C)CC\C=C(\C)CC\C=C(\C)CC\C=C(\C)CC\C=C(\C)CC\C=C(/C)CC\C=C(/C)CCC=C(C)C</p>
            <p>inchikey: BKUXVZCTYBVOAV-WPBMQZSPSA-L</p>
          </body>
        </notes>
        <annotation>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Beta__45__D__45__glucan__45__w__45__C__45__3__45__substitution_c" id="M_Beta__45__D__45__glucan__45__w__45__C__45__3__45__substitution_c" name="a &amp;beta;-D-glucan with a C3-substituted glucose" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_1__45__4__45__beta__45__Xylan_c" id="M_1__45__4__45__beta__45__Xylan_c" name="a (1&amp;rarr;4)-&amp;beta;-D-xylan" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_1__45__4__45__D__45__xylooligosaccharides_c" id="M_1__45__4__45__D__45__xylooligosaccharides_c" name="a (1-&gt;4)-&amp;beta;-D-xylan oligosaccharide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H34O17">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 546</p>
          </body>
        </notes>
      </species>
      <species metaid="M_1__45__3__45__alpha__45__D__45__Glucans_c" id="M_1__45__3__45__alpha__45__D__45__Glucans_c" name="a 1,3-&amp;alpha;-D-glucan" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 164</p>
          </body>
        </notes>
      </species>
      <species metaid="M_CPD__45__5164_c" id="M_CPD__45__5164_c" name="a (mannosyl)5-(N-acetylglucosaminyl)2-diphosphodolichol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__171_c" id="M_CPD__45__171_c" name="a dolichyl &amp;beta;-D-mannosyl phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__14375_c" id="M_CPD__45__14375_c" name="a glycopeptide-D-mannosyl-N4-N-acetyl-D-glucosamine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__5165_c" id="M_CPD__45__5165_c" name="a (mannosyl)6-(N-acetylglucosaminyl)2-diphosphodolichol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_a__45__glycopeptide__45__D__45__mannosyl__45__Nsup4sup__45__N__45__ace_c" id="M_a__45__glycopeptide__45__D__45__mannosyl__45__Nsup4sup__45__N__45__ace_c" name="a glycopeptide-D-mannosyl-N4-(N-acetyl-D-glucosaminyl)2-asparagine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_DOLICHOLP_c" id="M_DOLICHOLP_c" name="a dolichyl phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_N__45__acetyl__45__D__45__glucosamine__45__asparagine_c" id="M_N__45__acetyl__45__D__45__glucosamine__45__asparagine_c" name="N-acetyl-D-glucosamine-asparagine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Protein__45__With__45__N__45__Terminal__45__Pro_c" id="M_Protein__45__With__45__N__45__Terminal__45__Pro_c" name="a peptide with an N-terminal L-proline" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H9NOR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: *C(=O)[C@@H]1CCC[NH2+]1</p>
          </body>
        </notes>
      </species>
      <species metaid="M_Protein__45__With__45__N__45__Terminal__45__X__45__Pro_c" id="M_Protein__45__With__45__N__45__Terminal__45__X__45__Pro_c" name="a peptide with an N-terminal X-L-proline" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C7H11N2O2R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [NH3+][C@@H]([*])C(=O)N1CCC[C@H]1C(*)=O</p>
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        </notes>
      </species>
      <species metaid="M_CPD__45__5166_c" id="M_CPD__45__5166_c" name="a (mannosyl)7-(N-acetylglucosaminyl)2-diphosphodolichol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Protein__45__With__45__N__45__Terminal__45__Met_c" id="M_Protein__45__With__45__N__45__Terminal__45__Met_c" name="a peptide with an N-terminal L-methionine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
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      <species metaid="M_CPD__45__5167_c" id="M_CPD__45__5167_c" name="a (mannosyl)8-(N-acetylglucosaminyl)2-diphosphodolichol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C144H238N2O57P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 2971.3583</p>
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            <p>inchikey: YRUUGXZUKTWFST-HPIDHRFDSA-L</p>
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        </notes>
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      <species metaid="M_DEHYDROQUINATE_c" id="M_DEHYDROQUINATE_c" name="3-dehydroquinate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H9O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 189.1433</p>
            <p>smiles: O[C@@H]1C[C@@](O)(CC(=O)[C@H]1O)C([O-])=O</p>
            <p>inchikey: WVMWZWGZRAXUBK-SYTVJDICSA-M</p>
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        </notes>
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            <rdf:Description rdf:about="#M_DEHYDROQUINATE_c">
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                </rdf:Bag>
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      </species>
      <species metaid="M_QUINATE_c" id="M_QUINATE_c" name="L-quinate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H11O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 191.1592</p>
            <p>smiles: O[C@@H]1C[C@@](O)(C[C@@H](O)[C@H]1O)C([O-])=O</p>
            <p>inchikey: AAWZDTNXLSGCEK-WYWMIBKRSA-M</p>
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        <annotation>
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            <rdf:Description rdf:about="#M_QUINATE_c">
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      <species metaid="M_QUINOLINATE_c" id="M_QUINOLINATE_c" name="quinolinate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C7H3NO4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 165.1041</p>
            <p>smiles: [O-]C(=O)c1cccnc1C([O-])=O</p>
            <p>inchikey: GJAWHXHKYYXBSV-UHFFFAOYSA-L</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_QUINOLINATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
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      </species>
      <species metaid="M_IMINOASPARTATE_c" id="M_IMINOASPARTATE_c" name="2-iminosuccinate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H4NO4">
        <notes>
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            <p>mass: 130.0794</p>
            <p>smiles: [O-]C(=O)CC(=[NH2+])C([O-])=O</p>
            <p>inchikey: NMUOATVLLQEYHI-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_IMINOASPARTATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C4H5NO4/c5-2(4(8)9)1-3(6)7/h5H,1H2,(H,6,7)(H,8,9)/p-1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_N__45__ACETYL__45__GLUTAMYL__45__P_c" id="M_N__45__ACETYL__45__GLUTAMYL__45__P_c" name="N-acetylglutamyl-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C7H9NO8P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 266.1237</p>
            <p>smiles: CC(=O)N[C@@H](CCC(=O)OP([O-])([O-])=O)C([O-])=O</p>
            <p>inchikey: FCVIHFVSXHOPSW-YFKPBYRVSA-K</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_N__45__ACETYL__45__GLUTAMYL__45__P_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C7H12NO8P/c1-4(9)8-5(7(11)12)2-3-6(10)16-17(13,14)15/h5H,2-3H2,1H3,(H,8,9)(H,11,12)(H2,13,14,15)/p-3/t5-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__177_c" id="M_CPD__45__177_c" name="a 1-phosphatidyl-1D-myo-inositol 3-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C11H15O16P2R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [H][C@@](COC([*])=O)(COP([O-])(=O)O[C@H]1[C@H](O)[C@@H](O)[C@H](O)[C@@H](OP([O-])([O-])=O)[C@H]1O)OC([*])=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_3b__45__hydroxy__45__D5__45__steroids_c" id="M_3b__45__hydroxy__45__D5__45__steroids_c" name="a 3&amp;beta;-hydroxy-&amp;delta;5-steroid" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_3__45__oxo__45__D5__45__steroids_c" id="M_3__45__oxo__45__D5__45__steroids_c" name="a 3-oxo-&amp;delta;5-steroid" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_4__45__ALPHA__45__METHYL__45__5__45__ALPHA__45__CHOLEST__45__7__45__EN__45__3__45__ON_c" id="M_4__45__ALPHA__45__METHYL__45__5__45__ALPHA__45__CHOLEST__45__7__45__EN__45__3__45__ON_c" name="4&amp;alpha;-methyl-5&amp;alpha;-cholest-7-en-3-one" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H46O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 398.6642</p>
            <p>smiles: [H][C@@]1(CC[C@@]2([H])C3=CC[C@@]4([H])[C@H](C)C(=O)CC[C@]4(C)[C@@]3([H])CC[C@]12C)[C@H](C)CCCC(C)C</p>
            <p>inchikey: OWKGVPXWOHLTSL-LIUJFMQASA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_4__45__ALPHA__45__METHYL__45__5__45__ALPHA__45__CHOLEST__45__7__45__EN__45__3__45__ON_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C28H46O/c1-18(2)8-7-9-19(3)22-12-13-24-21-10-11-23-20(4)26(29)15-17-28(23,6)25(21)14-16-27(22,24)5/h10,18-20,22-25H,7-9,11-17H2,1-6H3/t19-,20+,22-,23+,24+,25+,27-,28+/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__5846_c" id="M_CPD__45__5846_c" name="3&amp;beta;-hydroxy-4&amp;beta;-methyl-5&amp;alpha;-cholest-7-ene-4&amp;alpha;-carboxylate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H47O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 443.6822</p>
            <p>smiles: [H][C@@]1(CC[C@@]2([H])C3=CC[C@]4([H])[C@](C)(CC[C@H](O)[C@@]4(C)C([O-])=O)[C@@]3([H])CC[C@]12C)[C@H](C)CCCC(C)C</p>
            <p>inchikey: UQFZKTIHSICSPG-DSHYQQBWSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__5846_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C29H48O3/c1-18(2)8-7-9-19(3)21-11-12-22-20-10-13-24-28(5,23(20)14-16-27(21,22)4)17-15-25(30)29(24,6)26(31)32/h10,18-19,21-25,30H,7-9,11-17H2,1-6H3,(H,31,32)/p-1/t19-,21-,22+,23+,24-,25+,27-,28-,29+/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_2__45__METHYL__45__ACETO__45__ACETYL__45__COA_c" id="M_2__45__METHYL__45__ACETO__45__ACETYL__45__COA_c" name="2-methylacetoacetyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C26H38N7O18P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 861.605</p>
            <p>smiles: CC(C(C)=O)C(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: NHNODHRSCRALBF-NQNBQJKNSA-J</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_2__45__METHYL__45__ACETO__45__ACETYL__45__COA_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C26H42N7O18P3S/c1-13(14(2)34)25(39)55-8-7-28-16(35)5-6-29-23(38)20(37)26(3,4)10-48-54(45,46)51-53(43,44)47-9-15-19(50-52(40,41)42)18(36)24(49-15)33-12-32-17-21(27)30-11-31-22(17)33/h11-13,15,18-20,24,36-37H,5-10H2,1-4H3,(H,28,35)(H,29,38)(H,43,44)(H,45,46)(H2,27,30,31)(H2,40,41,42)/p-4/t13?,15-,18-,19-,20+,24-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Cysteine__45__Desulfurase__45__L__45__cysteine_c" id="M_Cysteine__45__Desulfurase__45__L__45__cysteine_c" name="an [L-cysteine desulfurase]-L-cysteine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C3H6NOSR2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: SC[C@H]([NH2+]*)C(*)=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_L__45__Cysteine__45__Desulfurase__45__persulfide_c" id="M_L__45__Cysteine__45__Desulfurase__45__persulfide_c" name="an [L-cysteine desulfurase] L-cysteine persulfide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C3H6NOS2R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: SSC[C@H]([NH2+]*)C(*)=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_Chitodextrins_c" id="M_Chitodextrins_c" name="a chitodextrin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CHITOBIOSE_c" id="M_CHITOBIOSE_c" name="N,N&apos;-diacetylchitobiose" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H28N2O11">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 424.4003</p>
            <p>smiles: CC(=O)N[C@H]1C(O)O[C@H](CO)[C@@H](O[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2NC(C)=O)[C@@H]1O</p>
            <p>inchikey: CDOJPCSDOXYJJF-CBTAGEKQSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CHITOBIOSE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C16H28N2O11/c1-5(21)17-9-13(25)14(8(4-20)27-15(9)26)29-16-10(18-6(2)22)12(24)11(23)7(3-19)28-16/h7-16,19-20,23-26H,3-4H2,1-2H3,(H,17,21)(H,18,22)/t7-,8-,9-,10-,11-,12-,13-,14-,15?,16+/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__13227_c" id="M_CPD__45__13227_c" name="chitotriose" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="C18H38N3O13">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 504.505</p>
            <p>smiles: [NH3+][C@H]1C(O)O[C@H](CO)[C@@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO)[C@@H](O)[C@H](O)[C@H]3[NH3+])[C@H](O)[C@H]2[NH3+])[C@@H]1O</p>
            <p>inchikey: RQFQJYYMBWVMQG-NLJWRWSBSA-Q</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__13227_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C18H35N3O13/c19-7-12(27)14(5(2-23)30-16(7)29)33-18-9(21)13(28)15(6(3-24)32-18)34-17-8(20)11(26)10(25)4(1-22)31-17/h4-18,22-29H,1-3,19-21H2/p+3/t4-,5-,6-,7-,8-,9-,10-,11-,12-,13-,14-,15-,16?,17+,18+/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_N__45__acetyl__45__D__45__glucosamine_c" id="M_N__45__acetyl__45__D__45__glucosamine_c" name="N-acetyl-D-glucosamine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15NO6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 221.2078</p>
            <p>smiles: CC(=O)N[C@H]1C(O)O[C@H](CO)[C@@H](O)[C@@H]1O</p>
            <p>inchikey: OVRNDRQMDRJTHS-RTRLPJTCSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_N__45__acetyl__45__D__45__glucosamine_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C8H15NO6/c1-3(11)9-5-7(13)6(12)4(2-10)15-8(5)14/h4-8,10,12-14H,2H2,1H3,(H,9,11)/t4-,5-,6-,7-,8?/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Oxidized__45__Plastocyanins_c" id="M_Oxidized__45__Plastocyanins_c" name="an oxidized plastocyanin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="CuR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Plastocyanin__45__Reduced_c" id="M_Plastocyanin__45__Reduced_c" name="a reduced plastocyanin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="CuR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__196_c" id="M_CPD__45__196_c" name="octanoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C29H46N7O17P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 889.701</p>
            <p>smiles: CCCCCCCC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: KQMZYOXOBSXMII-CECATXLMSA-J</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__196_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD0__45__2108_c" id="M_CPD0__45__2108_c" name="trans-oct-2-enoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C29H44N7O17P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 887.685</p>
            <p>smiles: CCCCC\C=C\C(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: CPSDNAXXKWVYIY-NTLMCJQISA-J</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD0__45__2108_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C29H48N7O17P3S/c1-4-5-6-7-8-9-20(38)57-13-12-31-19(37)10-11-32-27(41)24(40)29(2,3)15-50-56(47,48)53-55(45,46)49-14-18-23(52-54(42,43)44)22(39)28(51-18)36-17-35-21-25(30)33-16-34-26(21)36/h8-9,16-18,22-24,28,39-40H,4-7,10-15H2,1-3H3,(H,31,37)(H,32,41)(H,45,46)(H,47,48)(H2,30,33,34)(H2,42,43,44)/p-4/b9-8+/t18-,22-,23-,24+,28-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Protein__45__Histidines_c" id="M_Protein__45__Histidines_c" name="a [protein]-L-histidine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H8N4O2R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Protein__45__pi__45__phospho__45__L__45__histidines_c" id="M_Protein__45__pi__45__phospho__45__L__45__histidines_c" name="a [protein]-N&amp;pi;-phospho-L-histidine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H6N3O4PR2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [O-]P([O-])(=O)n1cncc1C[C@H](N*)C(*)=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_S__45__ubiquitinyl__45__UCP__45__E2__45__L__45__cysteine_c" id="M_S__45__ubiquitinyl__45__UCP__45__E2__45__L__45__cysteine_c" name="an S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H7N2O2SR3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: *NCC(=O)SCC(N*)C(*)=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_Ubiquitin__45__carrier__45__protein__45__E2__45__L__45__cysteine_c" id="M_Ubiquitin__45__carrier__45__protein__45__E2__45__L__45__cysteine_c" name="an [E2 ubiquitin-conjugating enzyme]-L-cysteine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C3H6NOSR2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: SC[C@H]([NH2+]*)C(*)=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_HECT__45__Ubiquitin__45__carrier__45__protein__45__E3__45__L__45__cys_c" id="M_HECT__45__Ubiquitin__45__carrier__45__protein__45__E3__45__L__45__cys_c" name="a [HECT-type E3 ubiquitin transferase]-L-cysteine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C3H6NOSR2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: SC[C@H]([NH2+]*)C(*)=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_S__45__ubiquitinyl__45__HECT__45__E3__45__UCP__45__L__45__cysteine_c" id="M_S__45__ubiquitinyl__45__HECT__45__E3__45__UCP__45__L__45__cysteine_c" name="an S-ubiquitinyl-[HECT-type E3 ubiquitin transferase]-L-cysteine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H7N2O2SR3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: *NCC(=O)SC[C@H](N*)C(*)=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_METHYL__45__GLYOXAL_c" id="M_METHYL__45__GLYOXAL_c" name="methylglyoxal" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H4O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 72.0627</p>
            <p>smiles: [H]C(=O)C(C)=O</p>
            <p>inchikey: AIJULSRZWUXGPQ-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_METHYL__45__GLYOXAL_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C3H4O2/c1-3(5)2-4/h2H,1H3"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_S__45__LACTOYL__45__GLUTATHIONE_c" id="M_S__45__LACTOYL__45__GLUTATHIONE_c" name="(R)-S-lactoylglutathione" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H20N3O8S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 378.379</p>
            <p>smiles: C[C@@H](O)C(=O)SC[C@H](NC(=O)CC[C@H]([NH3+])C([O-])=O)C(=O)NCC([O-])=O</p>
            <p>inchikey: VDYDCVUWILIYQF-CSMHCCOUSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_S__45__LACTOYL__45__GLUTATHIONE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C13H21N3O8S/c1-6(17)13(24)25-5-8(11(21)15-4-10(19)20)16-9(18)3-2-7(14)12(22)23/h6-8,17H,2-5,14H2,1H3,(H,15,21)(H,16,18)(H,19,20)(H,22,23)/p-1/t6-,7+,8+/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Charged__45__SER__45__tRNAs_c" id="M_Charged__45__SER__45__tRNAs_c" name="an L-seryl-[tRNAser]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__5168_c" id="M_CPD__45__5168_c" name="a (mannosyl)9-(N-acetylglucosaminyl)2-diphosphodolichol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_DEHYDROSPHINGANINE_c" id="M_DEHYDROSPHINGANINE_c" name="3-dehydrosphinganine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H38NO2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 300.4993</p>
            <p>smiles: CCCCCCCCCCCCCCCC(=O)[C@@H]([NH3+])CO</p>
            <p>inchikey: KBUNOSOGGAARKZ-KRWDZBQOSA-O</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_DEHYDROSPHINGANINE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C18H37NO2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-18(21)17(19)16-20/h17,20H,2-16,19H2,1H3/p+1/t17-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__166_c" id="M_CPD__45__166_c" name="a dolichyl &amp;beta;-D-glucosyl phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_DITP_c" id="M_DITP_c" name="dITP" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H11N4O13P3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 488.1368</p>
            <p>smiles: O[C@H]1C[C@@H](O[C@@H]1COP([O-])(=O)OP([O-])(=O)OP([O-])([O-])=O)n1cnc2c1nc[nH]c2=O</p>
            <p>inchikey: UFJPAQSLHAGEBL-RRKCRQDMSA-J</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_DITP_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C10H15N4O13P3/c15-5-1-7(14-4-13-8-9(14)11-3-12-10(8)16)25-6(5)2-24-29(20,21)27-30(22,23)26-28(17,18)19/h3-7,15H,1-2H2,(H,20,21)(H,22,23)(H,11,12,16)(H2,17,18,19)/p-4/t5-,6+,7+/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_DIMP_c" id="M_DIMP_c" name="dIMP" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H11N4O7P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 330.1918</p>
            <p>smiles: O[C@H]1C[C@@H](O[C@@H]1COP([O-])([O-])=O)n1cnc2c1nc[nH]c2=O</p>
            <p>inchikey: PHNGFPPXDJJADG-RRKCRQDMSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_DIMP_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C10H13N4O7P/c15-5-1-7(21-6(5)2-20-22(17,18)19)14-4-13-8-9(14)11-3-12-10(8)16/h3-7,15H,1-2H2,(H,11,12,16)(H2,17,18,19)/p-2/t5-,6+,7+/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__5169_c" id="M_CPD__45__5169_c" name="a glucosyl-(mannosyl)9-(N-acetylglucosaminyl)2-diphosphodolichol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__5170_c" id="M_CPD__45__5170_c" name="a (glucosyl)2(mannosyl)9-(N-acetylglucosaminyl)2-diphosphodolichol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_XANTHOSINE__45__5__45__PHOSPHATE_c" id="M_XANTHOSINE__45__5__45__PHOSPHATE_c" name="XMP" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H11N4O9P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 362.1906</p>
            <p>smiles: O[C@@H]1[C@@H](COP([O-])([O-])=O)O[C@H]([C@@H]1O)n1cnc2c1[nH]c(=O)[nH]c2=O</p>
            <p>inchikey: DCTLYFZHFGENCW-UUOKFMHZSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_XANTHOSINE__45__5__45__PHOSPHATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C10H13N4O9P/c15-5-3(1-22-24(19,20)21)23-9(6(5)16)14-2-11-4-7(14)12-10(18)13-8(4)17/h2-3,5-6,9,15-16H,1H2,(H2,19,20,21)(H2,12,13,17,18)/p-2/t3-,5-,6-,9-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_XTP_c" id="M_XTP_c" name="XTP" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H11N4O15P3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 520.1356</p>
            <p>smiles: O[C@@H]1[C@@H](COP([O-])(=O)OP([O-])(=O)OP([O-])([O-])=O)O[C@H]([C@@H]1O)n1cnc2c1[nH]c(=O)[nH]c2=O</p>
            <p>inchikey: CAEFEWVYEZABLA-UUOKFMHZSA-J</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_XTP_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C10H15N4O15P3/c15-5-3(1-26-31(22,23)29-32(24,25)28-30(19,20)21)27-9(6(5)16)14-2-11-4-7(14)12-10(18)13-8(4)17/h2-3,5-6,9,15-16H,1H2,(H,22,23)(H,24,25)(H2,19,20,21)(H2,12,13,17,18)/p-4/t3-,5-,6-,9-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__18076_c" id="M_CPD__45__18076_c" name="a (glucosyl)3(mannosyl)9-(N-acetylglucosaminyl)2-diphosphodolichol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_tRNA__45__2__45__thiouridine34_c" id="M_tRNA__45__2__45__thiouridine34_c" name="a 2-thiouridine34 in tRNA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_TusE__45__L__45__cysteine_c" id="M_TusE__45__L__45__cysteine_c" name="a [TusE sulfur carrier protein]-L-cysteine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_TusE__45__S__45__sulfanylcysteine_c" id="M_TusE__45__S__45__sulfanylcysteine_c" name="a [TusE sulfur carrier protein]-S-sulfanylcysteine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_tRNA__45__uridine34_c" id="M_tRNA__45__uridine34_c" name="a uridine34 in tRNA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_SHIKIMATE_c" id="M_SHIKIMATE_c" name="shikimate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H9O5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 173.1439</p>
            <p>smiles: O[C@@H]1CC(=C[C@@H](O)[C@H]1O)C([O-])=O</p>
            <p>inchikey: JXOHGGNKMLTUBP-HSUXUTPPSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_SHIKIMATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C7H10O5/c8-4-1-3(7(11)12)2-5(9)6(4)10/h1,4-6,8-10H,2H2,(H,11,12)/p-1/t4-,5-,6-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_3__45__DEHYDRO__45__SHIKIMATE_c" id="M_3__45__DEHYDRO__45__SHIKIMATE_c" name="3-dehydroshikimate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H7O5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 171.128</p>
            <p>smiles: O[C@@H]1CC(=CC(=O)[C@H]1O)C([O-])=O</p>
            <p>inchikey: SLWWJZMPHJJOPH-PHDIDXHHSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_3__45__DEHYDRO__45__SHIKIMATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C7H8O5/c8-4-1-3(7(11)12)2-5(9)6(4)10/h1,5-6,9-10H,2H2,(H,11,12)/p-1/t5-,6-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_POLYPEPTIDE_c" id="M_POLYPEPTIDE_c" name="a polypeptide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_DIPEPTIDES_c" id="M_DIPEPTIDES_c" name="a dipeptide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H6N2O3R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [NH3+]C([*])C(=O)NC([*])C([O-])=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_TRIPEPTIDES_c" id="M_TRIPEPTIDES_c" name="a tripeptide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__8117_c" id="M_CPD__45__8117_c" name="&amp;gamma;-linolenate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H29O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 277.4222</p>
            <p>smiles: CCCCC\C=C/C\C=C/C\C=C/CCCCC([O-])=O</p>
            <p>inchikey: VZCCETWTMQHEPK-QNEBEIHSSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__8117_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C18H30O2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18(19)20/h6-7,9-10,12-13H,2-5,8,11,14-17H2,1H3,(H,19,20)/p-1/b7-6-,10-9-,13-12-"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Ubiquitin__45__C__45__Terminal__45__Glycine_c" id="M_Ubiquitin__45__C__45__Terminal__45__Glycine_c" name="a [ubiquitin] C-terminal glycine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H4NO2R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [O-]C(=O)C[NH2+]*</p>
          </body>
        </notes>
      </species>
      <species metaid="M_LINOLEIC_ACID_c" id="M_LINOLEIC_ACID_c" name="linoleate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H31O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 279.4381</p>
            <p>smiles: CCCCC\C=C/C\C=C/CCCCCCCC([O-])=O</p>
            <p>inchikey: OYHQOLUKZRVURQ-HZJYTTRNSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_LINOLEIC_ACID_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C18H32O2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18(19)20/h6-7,9-10H,2-5,8,11-17H2,1H3,(H,19,20)/p-1/b7-6-,10-9-"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_General__45__Protein__45__Substrates_c" id="M_General__45__Protein__45__Substrates_c" name="a protein" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__12653_c" id="M_CPD__45__12653_c" name="stearidonate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H27O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 275.4063</p>
            <p>smiles: CC\C=C/C\C=C/C\C=C/C\C=C/CCCCC([O-])=O</p>
            <p>inchikey: JIWBIWFOSCKQMA-LTKCOYKYSA-M</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_CPD__45__12653_c">
              <bqbiol:isVersionOf>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__469_c" id="M_CPD__45__469_c" name="N-acetyl-L-glutamate 5-semialdehyde" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H10NO4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 172.1591</p>
            <p>smiles: CC(=O)N[C@@H](CCC=O)C([O-])=O</p>
            <p>inchikey: BCPSFKBPHHBDAI-LURJTMIESA-M</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_CPD__45__469_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_ACETYL__45__GLU_c" id="M_ACETYL__45__GLU_c" name="N-acetyl-L-glutamate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C7H9NO5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 187.1512</p>
            <p>smiles: CC(=O)N[C@@H](CCC([O-])=O)C([O-])=O</p>
            <p>inchikey: RFMMMVDNIPUKGG-YFKPBYRVSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_ACETYL__45__GLU_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__597_c" id="M_CPD__45__597_c" name="N-carbamoylputrescine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H14N3O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 132.1836</p>
            <p>smiles: NC(=O)NCCCC[NH3+]</p>
            <p>inchikey: YANFYYGANIYHGI-UHFFFAOYSA-O</p>
          </body>
        </notes>
        <annotation>
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                </rdf:Bag>
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      <species metaid="M_CPD__45__13118_c" id="M_CPD__45__13118_c" name="GDP-&amp;beta;-L-fucose" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H23N5O15P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 587.3269</p>
            <p>smiles: C[C@@H]1O[C@H](OP([O-])(=O)OP([O-])(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)n2cnc3c2nc(N)[nH]c3=O)[C@@H](O)[C@H](O)[C@@H]1O</p>
            <p>inchikey: LQEBEXMHBLQMDB-JGQUBWHWSA-L</p>
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        </notes>
        <annotation>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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        </annotation>
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      <species metaid="M_GDP__45__4__45__DEHYDRO__45__6__45__DEOXY__45__D__45__MANNOSE_c" id="M_GDP__45__4__45__DEHYDRO__45__6__45__DEOXY__45__D__45__MANNOSE_c" name="GDP-4-dehydro-6-deoxy-&amp;alpha;-D-mannose" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H21N5O15P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 585.3111</p>
            <p>smiles: C[C@H]1O[C@H](OP([O-])(=O)OP([O-])(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)n2cnc3c2nc(N)[nH]c3=O)[C@@H](O)[C@@H](O)C1=O</p>
            <p>inchikey: PNHLMHWWFOPQLK-BKUUWRAGSA-L</p>
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        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_GDP__45__4__45__DEHYDRO__45__6__45__DEOXY__45__D__45__MANNOSE_c">
              <bqbiol:isVersionOf>
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                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C16H23N5O15P2/c1-4-7(22)9(24)11(26)15(33-4)35-38(30,31)36-37(28,29)32-2-5-8(23)10(25)14(34-5)21-3-18-6-12(21)19-16(17)20-13(6)27/h3-5,8-11,14-15,23-26H,2H2,1H3,(H,28,29)(H,30,31)(H3,17,19,20,27)/p-2/t4-,5-,8-,9+,10-,11+,14-,15-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_3__45__HYDROXY__45__3__45__METHYL__45__GLUTARYL__45__COA_c" id="M_3__45__HYDROXY__45__3__45__METHYL__45__GLUTARYL__45__COA_c" name="(S)-3-hydroxy-3-methylglutaryl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C27H39N7O20P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 906.622</p>
            <p>smiles: C[C@](O)(CC([O-])=O)CC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: CABVTRNMFUVUDM-VRHQGPGLSA-I</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_3__45__HYDROXY__45__3__45__METHYL__45__GLUTARYL__45__COA_c">
              <bqbiol:isVersionOf>
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                </rdf:Bag>
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          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_MEVALONATE_c" id="M_MEVALONATE_c" name="(R)-mevalonate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 147.1497</p>
            <p>smiles: C[C@@](O)(CCO)CC([O-])=O</p>
            <p>inchikey: KJTLQQUUPVSXIM-ZCFIWIBFSA-M</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_MEVALONATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C6H12O4/c1-6(10,2-3-7)4-5(8)9/h7,10H,2-4H2,1H3,(H,8,9)/p-1/t6-/m1/s1"/>
                </rdf:Bag>
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      </species>
      <species metaid="M_MAL_c" id="M_MAL_c" name="(S)-malate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H4O5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 132.0727</p>
            <p>smiles: O[C@@H](CC([O-])=O)C([O-])=O</p>
            <p>inchikey: BJEPYKJPYRNKOW-REOHCLBHSA-L</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_MAL_c">
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                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C4H6O5/c5-2(4(8)9)1-3(6)7/h2,5H,1H2,(H,6,7)(H,8,9)/p-2/t2-/m0/s1"/>
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        </annotation>
      </species>
      <species metaid="M_D__45__LACTATE_c" id="M_D__45__LACTATE_c" name="(R)-lactate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 89.0705</p>
            <p>smiles: C[C@@H](O)C([O-])=O</p>
            <p>inchikey: JVTAAEKCZFNVCJ-UWTATZPHSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_D__45__LACTATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
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        </annotation>
      </species>
      <species metaid="M_SHIKIMATE__45__5P_c" id="M_SHIKIMATE__45__5P_c" name="shikimate 3-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C7H8O8P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 251.109</p>
            <p>smiles: O[C@@H]1CC(=C[C@@H](OP([O-])([O-])=O)[C@H]1O)C([O-])=O</p>
            <p>inchikey: QYOJSKGCWNAKGW-PBXRRBTRSA-K</p>
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        </notes>
        <annotation>
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                </rdf:Bag>
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        </annotation>
      </species>
      <species metaid="M_FE__43__2_c" id="M_FE__43__2_c" name="Fe2+" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Fe">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 55.844</p>
            <p>smiles: [Fe++]</p>
            <p>inchikey: CWYNVVGOOAEACU-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_FE__43__2_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/Fe/q+2"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
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        </annotation>
      </species>
      <species metaid="M_SIROHEME_c" id="M_SIROHEME_c" name="siroheme" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C42H36FeN4O16">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 908.602</p>
            <p>smiles: C[C@]1(CC([O-])=O)[C@H](CCC([O-])=O)C2=CC3=[N+]4C(=Cc5c(CC([O-])=O)c(CCC([O-])=O)c6C=C7C(CCC([O-])=O)=C(CC([O-])=O)C8=[N+]7[Fe--]4(N2C1=C8)n56)[C@@H](CCC([O-])=O)[C@]3(C)CC([O-])=O</p>
            <p>inchikey: DLKSSIHHLYNIKN-QIISWYHFSA-D</p>
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        </notes>
        <annotation>
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      </species>
      <species metaid="M_SIROHYDROCHLORIN_c" id="M_SIROHYDROCHLORIN_c" name="sirohydrochlorin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C42H38N4O16">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 854.7727</p>
            <p>smiles: C[C@]1(CC([O-])=O)[C@H](CCC([O-])=O)c2cc3[nH]c(cc4nc(cc5[nH]c(cc1n2)c(CC([O-])=O)c5CCC([O-])=O)c(CCC([O-])=O)c4CC([O-])=O)[C@@H](CCC([O-])=O)[C@]3(C)CC([O-])=O</p>
            <p>inchikey: KWIZRXMMFRBUML-AHGFGAHVSA-F</p>
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        </notes>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 285.169</p>
            <p>smiles: [NH3+]CC(=O)NC1O[C@H](COP([O-])([O-])=O)[C@@H](O)[C@H]1O</p>
            <p>inchikey: OBQMLSFOUZUIOB-HJZCUYRDSA-M</p>
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            <rdf:Description rdf:about="#M_5__45__PHOSPHO__45__RIBOSYL__45__GLYCINEAMIDE_c">
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      <species metaid="M_5__45__P__45__BETA__45__D__45__RIBOSYL__45__AMINE_c" id="M_5__45__P__45__BETA__45__D__45__RIBOSYL__45__AMINE_c" name="5-phospho-&amp;beta;-D-ribosylamine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H11NO7P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 228.1177</p>
            <p>smiles: [NH3+][C@@H]1O[C@H](COP([O-])([O-])=O)[C@@H](O)[C@H]1O</p>
            <p>inchikey: SKCBPEVYGOQGJN-TXICZTDVSA-M</p>
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        </notes>
        <annotation>
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      <species metaid="M_3__45__KETO__45__ADIPYL__45__COA_c" id="M_3__45__KETO__45__ADIPYL__45__COA_c" name="3-oxoadipyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C27H37N7O20P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 904.607</p>
            <p>smiles: CC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12)[C@@H](O)C(=O)NCCC(=O)NCCSC(=O)CC(=O)CCC([O-])=O</p>
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        <annotation>
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      <species metaid="M_3__45__HYDROXYADIPYL__45__COA_c" id="M_3__45__HYDROXYADIPYL__45__COA_c" name="(3S)-hydroxyadipyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C27H39N7O20P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 906.622</p>
            <p>smiles: CC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12)[C@@H](O)C(=O)NCCC(=O)NCCSC(=O)C[C@@H](O)CCC([O-])=O</p>
            <p>inchikey: OTEACGAEDCIMBS-NOTSHUFBSA-I</p>
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        </notes>
        <annotation>
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      <species metaid="M_DOCOSANOATE_c" id="M_DOCOSANOATE_c" name="behenate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C22H43O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 339.5762</p>
            <p>smiles: CCCCCCCCCCCCCCCCCCCCCC([O-])=O</p>
            <p>inchikey: UKMSUNONTOPOIO-UHFFFAOYSA-M</p>
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      <species metaid="M_b__45__Keto__45__cis__45__D5__45__dodecenoyl__45__ACPs_c" id="M_b__45__Keto__45__cis__45__D5__45__dodecenoyl__45__ACPs_c" name="a (5Z)-3-oxo-dodec-5-enoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      </species>
      <species metaid="M_Eicosadienoates_c" id="M_Eicosadienoates_c" name="an icosadienoate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/>
      <species metaid="M_b__45__Hydroxy__45__cis__45__D5__45__dodecenoyl__45__ACPs_c" id="M_b__45__Hydroxy__45__cis__45__D5__45__dodecenoyl__45__ACPs_c" name="a (3R,5Z)-3-hydroxy-dodec-5-enoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      </species>
      <species metaid="M_Trans__45__D3__45__cis__45__D5__45__dodecenoyl__45__ACPs_c" id="M_Trans__45__D3__45__cis__45__D5__45__dodecenoyl__45__ACPs_c" name="a (3E,5Z)-dodeca-3,5-dienoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__85_c" id="M_CPD__45__85_c" name="1,2-dihydroxy-5-(methylthio)pent-1-en-3-one" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10O3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 162.207</p>
            <p>smiles: CSCCC(=O)C(\O)=C\O</p>
            <p>inchikey: CILXJJLQPTUUSS-XQRVVYSFSA-N</p>
          </body>
        </notes>
        <annotation>
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      <species metaid="M_CPD__45__479_c" id="M_CPD__45__479_c" name="2-oxo-4-methylthiobutanoate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H7O3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 147.173</p>
            <p>smiles: CSCCC(=O)C([O-])=O</p>
            <p>inchikey: SXFSQZDSUWACKX-UHFFFAOYSA-M</p>
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        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__479_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C5H8O3S/c1-9-3-2-4(6)5(7)8/h2-3H2,1H3,(H,7,8)/p-1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__13684_c" id="M_CPD__45__13684_c" name="cholest-5-en-3-one" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 384.6377</p>
            <p>smiles: [H][C@@]1(CC[C@@]2([H])[C@]3([H])CC=C4CC(=O)CC[C@]4(C)[C@@]3([H])CC[C@]12C)[C@H](C)CCCC(C)C</p>
            <p>inchikey: GGCLNOIGPMGLDB-GYKMGIIDSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__13684_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_ETHANOL__45__AMINE_c" id="M_ETHANOL__45__AMINE_c" name="ethanolamine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C2H8NO">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 62.0905</p>
            <p>smiles: [NH3+]CCO</p>
            <p>inchikey: HZAXFHJVJLSVMW-UHFFFAOYSA-O</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_ETHANOL__45__AMINE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C2H7NO/c3-1-2-4/h4H,1-3H2/p+1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CHOLESTEROL_c" id="M_CHOLESTEROL_c" name="cholesterol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 386.6535</p>
            <p>smiles: [H][C@@]1(CC[C@@]2([H])[C@]3([H])CC=C4C[C@@H](O)CC[C@]4(C)[C@@]3([H])CC[C@]12C)[C@H](C)CCCC(C)C</p>
            <p>inchikey: HVYWMOMLDIMFJA-DPAQBDIFSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CHOLESTEROL_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C27H46O/c1-18(2)7-6-8-19(3)23-11-12-24-22-10-9-20-17-21(28)13-15-26(20,4)25(22)14-16-27(23,24)5/h9,18-19,21-25,28H,6-8,10-17H2,1-5H3/t19-,21+,22+,23-,24+,25+,26+,27-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
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        </annotation>
      </species>
      <species metaid="M_CPD__45__659_c" id="M_CPD__45__659_c" name="L-arogenate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H12NO5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 226.2065</p>
            <p>smiles: [NH3+][C@@H](CC1(C=CC(O)C=C1)C([O-])=O)C([O-])=O</p>
            <p>inchikey: MIEILDYWGANZNH-DSQUFTABSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__659_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C10H13NO5/c11-7(8(13)14)5-10(9(15)16)3-1-6(12)2-4-10/h1-4,6-7,12H,5,11H2,(H,13,14)(H,15,16)/p-1/t6?,7-,10?/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__13695_c" id="M_CPD__45__13695_c" name="3,24-dioxocholest-4-en-26-oyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H70N7O19P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1174.093</p>
            <p>smiles: [H][C@@](C)(CCC(=O)C([H])(C)C(=O)SCC[NH+]=C([O-])CC[NH+]=C([O-])C([H])(O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OCC1([H])OC([H])(n2cnc3c(N)ncnc23)C([H])(O)C1([H])OP([O-])([O-])=O)[C@@]1([H])CC[C@@]2([H])[C@]3([H])CCC4=CC(=O)CC[C@]4(C)[C@@]3([H])CC[C@]12C</p>
            <p>inchikey: ZVFUUGBGZMBUAN-SIGSPYNCSA-J</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_CPD__45__13695_c">
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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        </annotation>
      </species>
      <species metaid="M_CPD__45__13694_c" id="M_CPD__45__13694_c" name="24-hydroxy-3-oxocholest-4-en-26-oyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C48H72N7O19P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1176.109</p>
            <p>smiles: [H][C@@](C)(CCC([H])(O)C([H])(C)C(=O)SCC[NH+]=C([O-])CC[NH+]=C([O-])[C@]([H])(O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@@]1([H])O[C@@]([H])(n2cnc3c(N)ncnc23)[C@]([H])(O)[C@]1([H])OP([O-])([O-])=O)[C@@]1([H])CC[C@@]2([H])[C@]3([H])CCC4=CC(=O)CC[C@]4(C)[C@@]3([H])CC[C@]12C</p>
            <p>inchikey: LPAPCIXIEIQRQA-OQRFGCRRSA-J</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__13694_c">
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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      <species metaid="M_CDP__45__CHOLINE_c" id="M_CDP__45__CHOLINE_c" name="CDP-choline" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H25N4O11P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 487.3166</p>
            <p>smiles: C[N+](C)(C)CCOP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n1ccc(N)nc1=O</p>
            <p>inchikey: RZZPDXZPRHQOCG-OJAKKHQRSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CDP__45__CHOLINE_c">
              <bqbiol:isVersionOf>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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        </annotation>
      </species>
      <species metaid="M_CPD__45__13713_c" id="M_CPD__45__13713_c" name="adenosine 5&apos;-phosphoselenate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O10PSe">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 472.16</p>
            <p>smiles: Nc1ncnc2n(cnc12)[C@@H]1O[C@H](COP([O-])(=O)O[Se]([O-])(=O)=O)[C@@H](O)[C@H]1O</p>
            <p>inchikey: XCADVMZZFPIERR-KQYNXXCUSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__13713_c">
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_PHOSPHATIDYLCHOLINE_c" id="M_PHOSPHATIDYLCHOLINE_c" name="a phosphatidylcholine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_HYDRPHENYLAC__45__CPD_c" id="M_HYDRPHENYLAC__45__CPD_c" name="(4-hydroxyphenyl)acetaldehyde" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H8O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 136.1479</p>
            <p>smiles: [H]C(=O)Cc1ccc(O)cc1</p>
            <p>inchikey: IPRPPFIAVHPVJH-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_HYDRPHENYLAC__45__CPD_c">
              <bqbiol:isVersionOf>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
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      </species>
      <species metaid="M_SELENATE_c" id="M_SELENATE_c" name="selenate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O4Se">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 142.96</p>
            <p>smiles: [O-][Se]([O-])(=O)=O</p>
            <p>inchikey: QYHFIVBSNOWOCQ-UHFFFAOYSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_SELENATE_c">
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                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/H2O4Se/c1-5(2,3)4/h(H2,1,2,3,4)/p-2"/>
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              </bqbiol:isVersionOf>
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      <species metaid="M_CPD__45__678_c" id="M_CPD__45__678_c" name="hydrogen selenide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="HSe">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 79.97</p>
            <p>smiles: [Se-][H]</p>
            <p>inchikey: SPVXKVOXSXTJOY-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__678_c">
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                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/H2Se/h1H2/p-1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_TYRAMINE_c" id="M_TYRAMINE_c" name="tyramine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H12NO">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 138.1864</p>
            <p>smiles: [NH3+]CCc1ccc(O)cc1</p>
            <p>inchikey: DZGWFCGJZKJUFP-UHFFFAOYSA-O</p>
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        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_TYRAMINE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C8H11NO/c9-6-5-7-1-3-8(10)4-2-7/h1-4,10H,5-6,9H2/p+1"/>
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        </annotation>
      </species>
      <species metaid="M_L__45__SELENOCYSTEINE_c" id="M_L__45__SELENOCYSTEINE_c" name="L-selenocysteine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2Se">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 168.05</p>
            <p>smiles: [NH3+][C@@H](C[SeH])C([O-])=O</p>
            <p>inchikey: ZKZBPNGNEQAJSX-REOHCLBHSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_L__45__SELENOCYSTEINE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C3H7NO2Se/c4-2(1-7)3(5)6/h2,7H,1,4H2,(H,5,6)/t2-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_SELENOHOMOCYSTEINE_c" id="M_SELENOHOMOCYSTEINE_c" name="seleno-L-homocysteine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2Se">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 182.08</p>
            <p>smiles: [NH3+][C@@H](CC[SeH])C([O-])=O</p>
            <p>inchikey: RCWCGLALNCIQNM-VKHMYHEASA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_SELENOHOMOCYSTEINE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C4H9NO2Se/c5-3(1-2-8)4(6)7/h3,8H,1-2,5H2,(H,6,7)/t3-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_S__45__ubi__45__N__45__term__45__specific__45__UCP__45__E2__45__L__45__cysteine_c" id="M_S__45__ubi__45__N__45__term__45__specific__45__UCP__45__E2__45__L__45__cysteine_c" name="an S-ubiquitinyl-[an N-terminal E2 ubiquitin-conjugating enzyme]-L-cysteine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H7N2O2SR3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: *NCC(=O)SC[C@H](N*)C(*)=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_N__45__terminal__45__specific__45__UCP__45__E2__45__L__45__cysteine_c" id="M_N__45__terminal__45__specific__45__UCP__45__E2__45__L__45__cysteine_c" name="an [N-terminal E2 ubiquitin-conjugating enzyme]-L-cysteine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C3H6NOSR2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: SC[C@H]([NH2+]*)C(*)=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_N__45__terminal__45__Amino__45__Acids_c" id="M_N__45__terminal__45__Amino__45__Acids_c" name="a [protein] N-terminal amino acid" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_N__45__terminal__45__ubiquitinyl__45__proteins_c" id="M_N__45__terminal__45__ubiquitinyl__45__proteins_c" name="an N-terminal-monoubiquitinyl-[protein]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__16817_c" id="M_CPD__45__16817_c" name="indoxyl sulfate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H6NO4S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 212.203</p>
            <p>smiles: [O-]S(=O)(=O)Oc1c[nH]c2ccccc12</p>
            <p>inchikey: BXFFHSIDQOFMLE-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__16817_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C8H7NO4S/c10-14(11,12)13-8-5-9-7-4-2-1-3-6(7)8/h1-5,9H,(H,10,11,12)/p-1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_INDOXYL_c" id="M_INDOXYL_c" name="indoxyl" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H7NO">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 133.1473</p>
            <p>smiles: Oc1c[nH]c2ccccc12</p>
            <p>inchikey: PCKPVGOLPKLUHR-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_INDOXYL_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C8H7NO/c10-8-5-9-7-4-2-1-3-6(7)8/h1-5,9-10H"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__108_c" id="M_CPD__45__108_c" name="4-methylphenol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H8O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 108.1378</p>
            <p>smiles: Cc1ccc(O)cc1</p>
            <p>inchikey: IWDCLRJOBJJRNH-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__108_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C7H8O/c1-6-2-4-7(8)5-3-6/h2-5,8H,1H3"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__16819_c" id="M_CPD__45__16819_c" name="4-methylphenyl sulfate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H7O4S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 187.194</p>
            <p>smiles: Cc1ccc(OS([O-])(=O)=O)cc1</p>
            <p>inchikey: WGNAKZGUSRVWRH-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__16819_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C7H8O4S/c1-6-2-4-7(5-3-6)11-12(8,9)10/h2-5H,1H3,(H,8,9,10)/p-1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__14115_c" id="M_CPD__45__14115_c" name="(S)-equol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H14O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 242.2699</p>
            <p>smiles: Oc1ccc(cc1)[C@H]1COc2cc(O)ccc2C1</p>
            <p>inchikey: ADFCQWZHKCXPAJ-GFCCVEGCSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__14115_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C15H14O3/c16-13-4-1-10(2-5-13)12-7-11-3-6-14(17)8-15(11)18-9-12/h1-6,8,12,16-17H,7,9H2/t12-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Peptides__45__with__45__Leader__45__Sequence_c" id="M_Peptides__45__with__45__Leader__45__Sequence_c" name="a peptide with a leader sequence" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Leader__45__Sequences_c" id="M_Leader__45__Sequences_c" name="a leader sequence" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_NIACINAMIDE_c" id="M_NIACINAMIDE_c" name="nicotinamide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H6N2O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 122.1246</p>
            <p>smiles: NC(=O)c1cccnc1</p>
            <p>inchikey: DFPAKSUCGFBDDF-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_NIACINAMIDE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C6H6N2O/c7-6(9)5-2-1-3-8-4-5/h1-4H,(H2,7,9)"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_ADP__45__D__45__Ribosyl__45__Acceptors_c" id="M_ADP__45__D__45__Ribosyl__45__Acceptors_c" name="an ADP-D-ribosyl acceptor" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__195_c" id="M_CPD__45__195_c" name="octanoate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H15O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 143.204</p>
            <p>smiles: CCCCCCCC([O-])=O</p>
            <p>inchikey: WWZKQHOCKIZLMA-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__195_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C8H16O2/c1-2-3-4-5-6-7-8(9)10/h2-7H2,1H3,(H,9,10)/p-1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__371_c" id="M_CPD__45__371_c" name="1-octanal" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H16O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 128.212</p>
            <p>smiles: [H]C(=O)CCCCCCC</p>
            <p>inchikey: NUJGJRNETVAIRJ-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__371_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C8H16O/c1-2-3-4-5-6-7-8-9/h8H,2-7H2,1H3"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_ACRYLAMIDE_c" id="M_ACRYLAMIDE_c" name="acrylamide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H5NO">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 71.0779</p>
            <p>smiles: NC(=O)C=C</p>
            <p>inchikey: HRPVXLWXLXDGHG-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_ACRYLAMIDE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C3H5NO/c1-2-3(4)5/h2H,1H2,(H2,4,5)"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_ACRYLATE_c" id="M_ACRYLATE_c" name="acrylate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H3O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 71.0553</p>
            <p>smiles: [O-]C(=O)C=C</p>
            <p>inchikey: NIXOWILDQLNWCW-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_ACRYLATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C3H4O2/c1-2-3(4)5/h2H,1H2,(H,4,5)/p-1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__694_c" id="M_CPD__45__694_c" name="cob(I)yrinate a,c-diamide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C45H56CoN6O12">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 931.8951</p>
            <p>smiles: CC1=C2N3[C@H]([C@H](CC([O-])=O)[C@@]2(C)CCC([O-])=O)[C@]2(C)[N+]4=C([C@@H](CCC([O-])=O)[C@]2(C)CC(N)=O)C(C)=C2[N+]5=C(C=C6[N+](=C1[C@@H](CCC([O-])=O)C6(C)C)[Co-3]345)[C@@H](CCC([O-])=O)[C@]2(C)CC(N)=O</p>
            <p>inchikey: NKLHEMWEQJCPPF-OKJGWHJPSA-H</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__694_c">
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        <notes>
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            <p>mass: 269.16</p>
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      <species metaid="M_tRNA__45__Sec_c" id="M_tRNA__45__Sec_c" name="a tRNAsec" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      <species metaid="M_SELENOMETHIONINE_c" id="M_SELENOMETHIONINE_c" name="seleno-L-methionine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H11NO2Se">
        <notes>
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            <p>mass: 196.11</p>
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            <rdf:Description rdf:about="#M_SELENOMETHIONINE_c">
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 845.605</p>
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      <species metaid="M_ISOVALERYL__45__COA_c" id="M_ISOVALERYL__45__COA_c" name="isovaleryl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C26H40N7O17P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 847.621</p>
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        <notes>
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            <p>mass: 985.785</p>
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            <p>mass: 983.769</p>
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            <p>mass: 285.1909</p>
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            <p>mass: 1001.784</p>
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        <notes>
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            <p>mass: 117.1479</p>
            <p>smiles: c1cc2ccccc2[nH]1</p>
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            <p>mass: 999.768</p>
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            <p>mass: 204.2252</p>
            <p>smiles: [NH3+][C@@H](Cc1c[nH]c2ccccc12)C([O-])=O</p>
            <p>inchikey: QIVBCDIJIAJPQS-VIFPVBQESA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_TRP_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C11H12N2O2/c12-9(11(14)15)5-7-6-13-10-4-2-1-3-8(7)10/h1-4,6,9,13H,5,12H2,(H,14,15)/t9-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_SPERMINE_c" id="M_SPERMINE_c" name="spermine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="4" fbc:chemicalFormula="C10H30N4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 206.3698</p>
            <p>smiles: [NH3+]CCC[NH2+]CCCC[NH2+]CCC[NH3+]</p>
            <p>inchikey: PFNFFQXMRSDOHW-UHFFFAOYSA-R</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_SPERMINE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C10H26N4/c11-5-3-9-13-7-1-2-8-14-10-4-6-12/h13-14H,1-12H2/p+4"/>
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        </annotation>
      </species>
      <species metaid="M_CPD__45__649_c" id="M_CPD__45__649_c" name="sphinganine 1-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H39NO5P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 380.4803</p>
            <p>smiles: CCCCCCCCCCCCCCC[C@@H](O)[C@@H]([NH3+])COP([O-])([O-])=O</p>
            <p>inchikey: YHEDRJPUIRMZMP-ZWKOTPCHSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__649_c">
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                <rdf:Bag>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__653_c" id="M_CPD__45__653_c" name="(S)-NADHX" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H29N7O15P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 681.4415</p>
            <p>smiles: NC(=O)C1=CN([C@@H]2O[C@H](COP([O-])(=O)OP([O-])(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n3cnc4c(N)ncnc34)[C@@H](O)[C@H]2O)[C@@H](O)CC1</p>
            <p>inchikey: IDBZKGQRLBFUFQ-VPHRTNKSSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__653_c">
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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        </annotation>
      </species>
      <species metaid="M_PALMITALDEHYDE_c" id="M_PALMITALDEHYDE_c" name="palmitaldehyde" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H32O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 240.4247</p>
            <p>smiles: [H]C(=O)CCCCCCCCCCCCCCC</p>
            <p>inchikey: NIOYUNMRJMEDGI-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_PALMITALDEHYDE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C16H32O/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17/h16H,2-15H2,1H3"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
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          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD0__45__2472_c" id="M_CPD0__45__2472_c" name="(R)-NADHX" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H29N7O15P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 681.4415</p>
            <p>smiles: NC(=O)C1=CN([C@@H]2O[C@H](COP([O-])(=O)OP([O-])(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n3cnc4c(N)ncnc34)[C@@H](O)[C@H]2O)[C@H](O)CC1</p>
            <p>inchikey: IDBZKGQRLBFUFQ-MTKBYBFRSA-L</p>
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        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD0__45__2472_c">
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
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        </annotation>
      </species>
      <species metaid="M_DNA__45__containing__45__a__45__Apyrimidinic__45__Sites_c" id="M_DNA__45__containing__45__a__45__Apyrimidinic__45__Sites_c" name="a DNA containing an apyrimidinic site" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__13793_c" id="M_CPD__45__13793_c" name="3-oxo-24-ethyl-cholest-5-ene" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H48O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 412.6908</p>
            <p>smiles: [H][C@@](CC)(CC[C@@]([H])(C)[C@@]1([H])CC[C@@]2([H])[C@]3([H])CC=C4CC(=O)CC[C@]4(C)[C@@]3([H])CC[C@]12C)C(C)C</p>
            <p>inchikey: KYOFIJXMVNQYFC-XJZKHKOHSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__13793_c">
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Damaged__45__DNA__45__Pyrimidine_c" id="M_Damaged__45__DNA__45__Pyrimidine_c" name="a damaged DNA pyrimidine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_A__45__LIPID__45__HYDROPEROXIDE_c" id="M_A__45__LIPID__45__HYDROPEROXIDE_c" name="a hydroperoxy-fatty-acyl-[lipid]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Lipid__45__hydroxy__45__fatty__45__acids_c" id="M_Lipid__45__hydroxy__45__fatty__45__acids_c" name="a hydroxy-fatty-acyl-[lipid]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="HOR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: O*</p>
          </body>
        </notes>
      </species>
      <species metaid="M_Alkyl__45__Hydro__45__Peroxides_c" id="M_Alkyl__45__Hydro__45__Peroxides_c" name="an organic hydroperoxide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="HO2R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: OO[*]</p>
          </body>
        </notes>
      </species>
      <species metaid="M_Protein__45__Disulfides_c" id="M_Protein__45__Disulfides_c" name="a protein disulfide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_PROT__45__CYS_c" id="M_PROT__45__CYS_c" name="a [protein]-L-cysteine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_2__45__HYDROXYPHYTANOYL__45__COA_c" id="M_2__45__HYDROXYPHYTANOYL__45__COA_c" name="2-hydroxyphytanoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H70N7O18P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1074.019</p>
            <p>smiles: CC(C)CCCC(C)CCCC(C)CCCC(C)C(O)C(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: WNVFJMYPVBOLKV-YLNUKALLSA-J</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_2__45__HYDROXYPHYTANOYL__45__COA_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
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                </rdf:Bag>
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          </rdf:RDF>
        </annotation>
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      <species metaid="M_CPD__45__206_c" id="M_CPD__45__206_c" name="phytanoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H70N7O17P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1058.02</p>
            <p>smiles: CC(C)CCCC(C)CCCC(C)CCCC(C)CC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: NRJQGHHZMSOUEN-ZJGVPSKGSA-J</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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                </rdf:Bag>
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        </annotation>
      </species>
      <species metaid="M_CPD__45__6321_c" id="M_CPD__45__6321_c" name="a [procollagen] trans 4-hyroxy-L-proline" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_PROCOLLAGEN__45__L__45__PROLINE_c" id="M_PROCOLLAGEN__45__L__45__PROLINE_c" name="a [procollagen]-L-proline" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H8N2O2R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: *NC(=O)[C@@H]1CCCN1C(*)=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_CPD__45__16825_c" id="M_CPD__45__16825_c" name="(S)-equol 4&apos;-sulfate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H13O6S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 321.326</p>
            <p>smiles: Oc1ccc2C[C@H](COc2c1)c1ccc(OS([O-])(=O)=O)cc1</p>
            <p>inchikey: UXOJWGSGKUYMIA-GFCCVEGCSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__16825_c">
              <bqbiol:isVersionOf>
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              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_THMPT_c" id="M_THMPT_c" name="tetrahydromethanopterin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
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      <species metaid="M_2__45__DEHYDROPANTOATE_c" id="M_2__45__DEHYDROPANTOATE_c" name="2-dehydropantoate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 145.1338</p>
            <p>smiles: CC(C)(CO)C(=O)C([O-])=O</p>
            <p>inchikey: PKVVTUWHANFMQC-UHFFFAOYSA-M</p>
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        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_2__45__DEHYDROPANTOATE_c">
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        </annotation>
      </species>
      <species metaid="M_NICOTINAMIDE_NUCLEOTIDE_c" id="M_NICOTINAMIDE_NUCLEOTIDE_c" name="&amp;beta;-nicotinamide D-ribonucleotide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H14N2O8P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 333.2118</p>
            <p>smiles: NC(=O)c1ccc[n+](c1)[C@@H]1O[C@H](COP([O-])([O-])=O)[C@@H](O)[C@H]1O</p>
            <p>inchikey: DAYLJWODMCOQEW-TURQNECASA-M</p>
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        </notes>
        <annotation>
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      <species metaid="M_NICOTINAMIDE_RIBOSE_c" id="M_NICOTINAMIDE_RIBOSE_c" name="1-(&amp;beta;-D ribofuranosyl)nicotinamide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C11H15N2O5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 255.2467</p>
            <p>smiles: NC(=O)c1ccc[n+](c1)[C@@H]1O[C@H](CO)[C@@H](O)[C@H]1O</p>
            <p>inchikey: JLEBZPBDRKPWTD-TURQNECASA-O</p>
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        </notes>
        <annotation>
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              </bqbiol:isVersionOf>
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        </annotation>
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      <species metaid="M_METHYLENETETRAHYDROMETHANOPTERIN_c" id="M_METHYLENETETRAHYDROMETHANOPTERIN_c" name="5,10-methylene-tetrahydromethanopterin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C31H42N6O16P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 785.6712</p>
            <p>smiles: [H][C@@]12[C@@H](C)N(CN1c1c(N[C@H]2C)nc(N)[nH]c1=O)c1ccc(C[C@H](O)[C@H](O)[C@H](O)CO[C@H]2O[C@H](COP([O-])(=O)O[C@@H](CCC([O-])=O)C([O-])=O)[C@@H](O)[C@H]2O)cc1</p>
            <p>inchikey: GBMIGEWJAPFSQI-CAFBYHECSA-K</p>
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        </notes>
        <annotation>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 842.852</p>
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            <p>inchikey: YJISLDWVIYDIOE-WGTGPSAHSA-L</p>
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        </notes>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 266.25</p>
            <p>smiles: OC[C@]1(O)NC(=O)[C@](O)(Cc2ccccc2)NC1=O</p>
            <p>inchikey: PXYPZMRMTKVYSM-VXGBXAGGSA-N</p>
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        </notes>
        <annotation>
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      <species metaid="M_5__45__OXOPROLINE_c" id="M_5__45__OXOPROLINE_c" name="5-oxo-L-proline" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H6NO3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 128.1066</p>
            <p>smiles: [O-]C(=O)[C@@H]1CCC(=O)N1</p>
            <p>inchikey: ODHCTXKNWHHXJC-VKHMYHEASA-M</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 586.638</p>
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            <p>inchikey: CHBULTTUDAIWDP-HCIHMXRSSA-N</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 298.381</p>
            <p>smiles: OC[C@]1(S)NC(=O)[C@](S)(Cc2ccccc2)NC1=O</p>
            <p>inchikey: VZGSJJJQZPTKGR-VXGBXAGGSA-N</p>
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        <annotation>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 296.365</p>
            <p>smiles: OC[C@@]12NC(=O)[C@@](Cc3ccccc3)(NC1=O)SS2</p>
            <p>inchikey: POIIJAAGMGNXLO-RYUDHWBXSA-N</p>
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      <species metaid="M_CPD__45__16954_c" id="M_CPD__45__16954_c" name="[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H12N5O8P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 380.1694</p>
            <p>smiles: C[C@@H](OP([O-])(=O)OP([O-])([O-])=O)C1=Nc2c(N[C@H]1C)nc(N)[nH]c2=O</p>
            <p>inchikey: PJDXUYNCNWFPCZ-IUYQGCFVSA-K</p>
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      <species metaid="M_CPD__45__16953_c" id="M_CPD__45__16953_c" name="2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H13N5O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 223.2318</p>
            <p>smiles: C[C@@H](O)C1=Nc2c(N[C@H]1C)nc(N)[nH]c2=O</p>
            <p>inchikey: GHRBCDHNYSUFRN-IUYQGCFVSA-N</p>
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      <species metaid="M_Deamido__45__bleomycins_c" id="M_Deamido__45__bleomycins_c" name="a deamido-bleomycin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Bleomycins_c" id="M_Bleomycins_c" name="a bleomycin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_SUMO__45__propeptides_c" id="M_SUMO__45__propeptides_c" name="a small ubiquitin-like modifier (SUMO) propeptide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_SUMO__45__peptides_c" id="M_SUMO__45__peptides_c" name="a mature small ubiquitin-like modifier (SUMO) peptide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_O__45__Sialoglycoproteins_c" id="M_O__45__Sialoglycoproteins_c" name="a O-sialoglycoprotein" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_mitochondrial__45__intermediate__45__protein_c" id="M_mitochondrial__45__intermediate__45__protein_c" name="mitochondrial intermediate protein" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Octapeptides_c" id="M_Octapeptides_c" name="an octapeptide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_mature__45__protein_c" id="M_mature__45__protein_c" name="a mature protein" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Processed__45__Mitochondrial__45__Proteins_c" id="M_Processed__45__Mitochondrial__45__Proteins_c" name="a processed mitochondrial protein" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Mitochondrial__45__Preproteins_c" id="M_Mitochondrial__45__Preproteins_c" name="a mitochondrial preprotein including a mitochondrial targeting sequence" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_OLIGOPEPTIDES_c" id="M_OLIGOPEPTIDES_c" name="an oligopeptide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__12377_c" id="M_CPD__45__12377_c" name="hydroxyl radical" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="HO">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 17.0073</p>
            <p>smiles: [O][H]</p>
            <p>inchikey: TUJKJAMUKRIRHC-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_CPD__45__12377_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/HO/h1H"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
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      <species metaid="M_CPD__45__690_c" id="M_CPD__45__690_c" name="adenosyl-cobyrinate a,c-diamide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C55H68CoN11O15">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1182.1285</p>
            <p>smiles: C\C1=C2\N=C(\C=C3/N=C([C@@H](CCC([O-])=O)C3(C)C)/C(/C)=C3\N([Co+]C[C@H]4O[C@H]([C@H](O)[C@@H]4O)n4cnc5c(N)ncnc45)[C@H]([C@H](CC([O-])=O)[C@@]3(C)CCC([O-])=O)[C@]3(C)N=C1[C@@H](CCC([O-])=O)[C@]3(C)CC(N)=O)[C@@H](CCC([O-])=O)[C@]2(C)CC(N)=O</p>
            <p>inchikey: OCNLJCZKGHKJGF-NQYRMHKHSA-H</p>
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        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_RETINAL_c" id="M_RETINAL_c" name="all-trans-retinal" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H28O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 284.4357</p>
            <p>smiles: [H]C(=O)\C=C(/C)\C=C\C=C(/C)\C=C\C1=C(C)CCCC1(C)C</p>
            <p>inchikey: NCYCYZXNIZJOKI-OVSJKPMPSA-N</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_RETINAL_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Retinols_c" id="M_Retinols_c" name="a retinol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H30O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 286.4516</p>
            <p>smiles: C\C(=C/CO)\C=C\C=C(/C)\C=C\C1=C(C)CCCC1(C)C</p>
            <p>inchikey: FPIPGXGPPPQFEQ-OVSJKPMPSA-N</p>
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        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_Retinols_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_PALMITATE_c" id="M_PALMITATE_c" name="palmitate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H31O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 255.4167</p>
            <p>smiles: CCCCCCCCCCCCCCCC([O-])=O</p>
            <p>inchikey: IPCSVZSSVZVIGE-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_PALMITATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C16H32O2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16(17)18/h2-15H2,1H3,(H,17,18)/p-1"/>
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          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CHOCOLA_A_c" id="M_CHOCOLA_A_c" name="all-trans-retinyl palmitate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C36H60O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 524.8604</p>
            <p>smiles: CCCCCCCCCCCCCCCC(=O)OC\C=C(/C)\C=C\C=C(/C)\C=C\C1=C(C)CCCC1(C)C</p>
            <p>inchikey: VYGQUTWHTHXGQB-FFHKNEKCSA-N</p>
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        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CHOCOLA_A_c">
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      <species metaid="M_RIBOSE__45__5P_c" id="M_RIBOSE__45__5P_c" name="D-ribose 5-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O8P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 228.095</p>
            <p>smiles: OC1O[C@H](COP([O-])([O-])=O)[C@@H](O)[C@H]1O</p>
            <p>inchikey: KTVPXOYAKDPRHY-SOOFDHNKSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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      <species metaid="M_CPD__45__67_c" id="M_CPD__45__67_c" name="2-phosphoglycolate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C2H2O6P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 153.0091</p>
            <p>smiles: [O-]C(=O)COP([O-])([O-])=O</p>
            <p>inchikey: ASCFNMCAHFUBCO-UHFFFAOYSA-K</p>
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        </notes>
        <annotation>
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      <species metaid="M_THREO__45__DS__45__ISO__45__CITRATE_c" id="M_THREO__45__DS__45__ISO__45__CITRATE_c" name="D-threo-isocitrate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H5O7">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 189.1013</p>
            <p>smiles: O[C@H]([C@H](CC([O-])=O)C([O-])=O)C([O-])=O</p>
            <p>inchikey: ODBLHEXUDAPZAU-ZAFYKAAXSA-K</p>
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                </rdf:Bag>
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      </species>
      <species metaid="M_5__45__AMINO__45__LEVULINATE_c" id="M_5__45__AMINO__45__LEVULINATE_c" name="5-aminolevulinate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 131.1299</p>
            <p>smiles: [NH3+]CC(=O)CCC([O-])=O</p>
            <p>inchikey: ZGXJTSGNIOSYLO-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_5__45__AMINO__45__LEVULINATE_c">
              <bqbiol:isVersionOf>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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      </species>
      <species metaid="M_OXALO__45__SUCCINATE_c" id="M_OXALO__45__SUCCINATE_c" name="oxalosuccinate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H3O7">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 187.0855</p>
            <p>smiles: [O-]C(=O)CC(C([O-])=O)C(=O)C([O-])=O</p>
            <p>inchikey: UFSCUAXLTRFIDC-UHFFFAOYSA-K</p>
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        </notes>
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            <rdf:Description rdf:about="#M_OXALO__45__SUCCINATE_c">
              <bqbiol:isVersionOf>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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      </species>
      <species metaid="M_GLUTAMATE__45__1__45__SEMIALDEHYDE_c" id="M_GLUTAMATE__45__1__45__SEMIALDEHYDE_c" name="(S)-4-amino-5-oxopentanoate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 131.1299</p>
            <p>smiles: [H]C(=O)[C@@H]([NH3+])CCC([O-])=O</p>
            <p>inchikey: MPUUQNGXJSEWTF-BYPYZUCNSA-N</p>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Glutamine__45__synthetase__45__adenylyl__45__Tyr_c" id="M_Glutamine__45__synthetase__45__adenylyl__45__Tyr_c" name="a [glutamine synthetase]-O4-(5&apos;-adenylyl)-L-tyrosine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H21N7O9PR2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Glutamine__45__synthetase__45__Tyr_c" id="M_Glutamine__45__synthetase__45__Tyr_c" name="a [glutamine-synthetase]-L-tyrosine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H10N2O3R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__2961_c" id="M_CPD__45__2961_c" name="D-gluconate 6-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H10O10P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 273.113</p>
            <p>smiles: O[C@H](COP([O-])([O-])=O)[C@@H](O)[C@H](O)[C@@H](O)C([O-])=O</p>
            <p>inchikey: BIRSGZKFKXLSJQ-SQOUGZDYSA-K</p>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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        </annotation>
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      <species metaid="M_MG__45__PROTOPORPHYRIN__45__MONOMETHYL__45__ESTER_c" id="M_MG__45__PROTOPORPHYRIN__45__MONOMETHYL__45__ESTER_c" name="magnesium-protoporphyrin IX 13-monomethyl ester" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C35H33MgN4O4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 597.966</p>
            <p>smiles: COC(=O)CCc1c(C)c2C=C3C(C=C)=C(C)C4=[N+]3[Mg--]35n2c1C=C1C(CCC([O-])=O)=C(C)C(C=c2c(C)c(C=C)c(=C4)n32)=[N+]51</p>
            <p>inchikey: JHTBRMHXRULRGV-NCCDZXNNSA-L</p>
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        </notes>
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            <rdf:Description rdf:about="#M_MG__45__PROTOPORPHYRIN__45__MONOMETHYL__45__ESTER_c">
              <bqbiol:isVersionOf>
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        </annotation>
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      <species metaid="M_MG__45__PROTOPORPHYRIN_c" id="M_MG__45__PROTOPORPHYRIN_c" name="Mg-protoporphyrin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C34H30MgN4O4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 582.932</p>
            <p>smiles: CC1=C(CCC([O-])=O)C2=N\C\1=C/c1c(C)c(C=C)c3\C=C4/N=C(/C=c5/c(C)c(CCC([O-])=O)\c(=C\2)n5[Mg]n13)C(C=C)=C4C</p>
            <p>inchikey: REJJDEGSUOCEEW-RGGAHWMASA-J</p>
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        </notes>
        <annotation>
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      <species metaid="M_CPD__45__4143_c" id="M_CPD__45__4143_c" name="sitosterol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H50O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 414.7067</p>
            <p>smiles: [H][C@@]1(CC[C@@]2([H])[C@]3([H])CC=C4C[C@@H](O)CC[C@]4(C)[C@@]3([H])CC[C@]12C)[C@H](C)CC[C@@H](CC)C(C)C</p>
            <p>inchikey: KZJWDPNRJALLNS-VJSFXXLFSA-N</p>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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      <species metaid="M_Unfolded__45__Proteins_c" id="M_Unfolded__45__Proteins_c" name="an unfolded protein" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__334_c" id="M_CPD__45__334_c" name="2,3-dioxo-L-gulonate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H7O7">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 191.1161</p>
            <p>smiles: OC[C@H](O)[C@@H](O)C(=O)C(=O)C([O-])=O</p>
            <p>inchikey: GJQWCDSAOUMKSE-STHAYSLISA-M</p>
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      <species metaid="M_CPD__45__13907_c" id="M_CPD__45__13907_c" name="dehydroascorbate (bicyclic form)" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H8O7">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 192.1235</p>
            <p>smiles: [H][C@]1(O)CO[C@@]2(O)[C@]1([H])OC(=O)C2(O)O</p>
            <p>inchikey: QPPOKIPSRPKDEM-VPGXFDHMSA-N</p>
          </body>
        </notes>
        <annotation>
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      <species metaid="M_L__45__DEHYDRO__45__ASCORBATE_c" id="M_L__45__DEHYDRO__45__ASCORBATE_c" name="L-dehydro-ascorbate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H5O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 173.1008</p>
            <p>smiles: OC[C@H](O)[C-]1OC(=O)C(=O)C1=O</p>
            <p>inchikey: OESHPIGALOBJLM-REOHCLBHSA-N</p>
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            <rdf:Description rdf:about="#M_L__45__DEHYDRO__45__ASCORBATE_c">
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      <species metaid="M_EPOXYSQUALENE_c" id="M_EPOXYSQUALENE_c" name="(3S)-2,3-epoxy-2,3-dihydrosqualene" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H50O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 426.7174</p>
            <p>smiles: CC(C)=CCC\C(C)=C\CC\C(C)=C\CC\C=C(/C)CC\C=C(/C)CC[C@@H]1OC1(C)C</p>
            <p>inchikey: QYIMSPSDBYKPPY-RSKUXYSASA-N</p>
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      <species metaid="M_CPD__45__13914_c" id="M_CPD__45__13914_c" name="cyclic-2,3-O-oxalyl-L-threonate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H5O7">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 189.1002</p>
            <p>smiles: OCC1OC(=O)C(=O)OC1C([O-])=O</p>
            <p>inchikey: NKBSFRFTBUHMJF-UHFFFAOYSA-M</p>
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      <species metaid="M_STRICTOSIDINE_c" id="M_STRICTOSIDINE_c" name="strictosidine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C27H35N2O9">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 531.5743</p>
            <p>smiles: [H][C@@]1(C[C@H]2[C@@H](C=C)[C@H](O[C@@H]3O[C@H](CO)[C@@H](O)[C@H](O)[C@H]3O)OC=C2C(=O)OC)[NH2+]CCc2c1[nH]c1ccccc21</p>
            <p>inchikey: XBAMJZTXGWPTRM-NTXHKPOFSA-O</p>
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      <species metaid="M_CPD__45__13913_c" id="M_CPD__45__13913_c" name="2-carboxy-L-xylonolactone" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H7O7">
        <notes>
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            <p>mass: 191.1161</p>
            <p>smiles: OCC1OC(=O)C(O)(C1O)C([O-])=O</p>
            <p>inchikey: ZNJUNWARRIXWAA-UHFFFAOYSA-M</p>
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      <species metaid="M_SECOLOGANIN__45__CPD_c" id="M_SECOLOGANIN__45__CPD_c" name="secologanin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H24O10">
        <notes>
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            <p>mass: 388.3665</p>
            <p>smiles: COC(=O)C1=CO[C@@H](O[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O)[C@H](C=C)[C@@H]1CC=O</p>
            <p>inchikey: CSKKDSFETGLMSB-NRZPKYKESA-N</p>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
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        </annotation>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 208.124</p>
            <p>smiles: OCC(O)C(O)C(O)(C([O-])=O)C([O-])=O</p>
            <p>inchikey: CQIRJDZGDXTXKF-UHFFFAOYSA-L</p>
          </body>
        </notes>
        <annotation>
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                </rdf:Bag>
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        </annotation>
      </species>
      <species metaid="M_TRYPTAMINE_c" id="M_TRYPTAMINE_c" name="tryptamine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C10H13N2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 161.2231</p>
            <p>smiles: [NH3+]CCc1c[nH]c2ccccc12</p>
            <p>inchikey: APJYDQYYACXCRM-UHFFFAOYSA-O</p>
          </body>
        </notes>
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            <rdf:Description rdf:about="#M_TRYPTAMINE_c">
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      <species metaid="M_CPD__45__13910_c" id="M_CPD__45__13910_c" name="cyclic- 3,4-O-oxalyl-L-threonate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H5O7">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 189.1002</p>
            <p>smiles: OC(C1COC(=O)C(=O)O1)C([O-])=O</p>
            <p>inchikey: FTDFTFXOJYXVTH-UHFFFAOYSA-M</p>
          </body>
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      <species metaid="M_Cytochromes__45__C__45__Reduced_c" id="M_Cytochromes__45__C__45__Reduced_c" name="a reduced c-type cytochrome" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
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      <species metaid="M_Cytochromes__45__C__45__Oxidized_c" id="M_Cytochromes__45__C__45__Oxidized_c" name="an oxidized c-type cytochrome" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      <species metaid="M_ALPHA__45__METHYL__45__5__45__ALPHA__45__ERGOSTA_c" id="M_ALPHA__45__METHYL__45__5__45__ALPHA__45__ERGOSTA_c" name="4&amp;alpha;-methyl-5&amp;alpha;-ergosta-8,14,24(28)-trien-3&amp;beta;-ol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H46O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 410.6749</p>
            <p>smiles: [H][C@@]1(CC=C2C3=C(CC[C@]12C)[C@@]1(C)CC[C@H](O)[C@@H](C)[C@]1([H])CC3)[C@H](C)CCC(=C)C(C)C</p>
            <p>inchikey: HLAWVOWADPNAGN-BAHZUFOISA-N</p>
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      <species metaid="M_OBTUSIFOLIOL_c" id="M_OBTUSIFOLIOL_c" name="obtusifoliol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H50O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 426.7174</p>
            <p>smiles: CC(C)C(=C)CC[C@@H](C)[C@H]1CC[C@@]2(C)C3=C(CC[C@]12C)[C@@]1(C)CC[C@H](O)[C@@H](C)C1CC3</p>
            <p>inchikey: MMNYKQIDRZNIKT-YLANKJTKSA-N</p>
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        <annotation>
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            <rdf:Description rdf:about="#M_OBTUSIFOLIOL_c">
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 301.4436</p>
            <p>smiles: [H][C@@]12CC[C@@H]3C[C@]1(CC3=C)CC[C@]1([H])[C@@](C)(CCC[C@@]21C)C([O-])=O</p>
            <p>inchikey: NIKHGUQULKYIGE-OTCXFQBHSA-M</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 317.443</p>
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            <p>inchikey: KMLXVEXJZSTMBV-YDIYEOSVSA-M</p>
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      <species metaid="M_NN__45__DIMETHYLANILINE_c" id="M_NN__45__DIMETHYLANILINE_c" name="N,N-dimethylaniline" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H11N">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 121.1796</p>
            <p>smiles: CN(C)c1ccccc1</p>
            <p>inchikey: JLTDJTHDQAWBAV-UHFFFAOYSA-N</p>
          </body>
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          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_NN__45__DIMETHYLANILINE_c">
              <bqbiol:isVersionOf>
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      <species metaid="M_NN__45__DIMETHYLANILINE__45__N__45__OXIDE_c" id="M_NN__45__DIMETHYLANILINE__45__N__45__OXIDE_c" name="N,N-dimethylaniline-N-oxide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H11NO">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 137.179</p>
            <p>smiles: CN(C)(=O)c1ccccc1</p>
            <p>inchikey: LKQUDAOAMBKKQW-UHFFFAOYSA-N</p>
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        </notes>
        <annotation>
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      <species metaid="M_S__45__HYDROXYMETHYLGLUTATHIONE_c" id="M_S__45__HYDROXYMETHYLGLUTATHIONE_c" name="S-hydroxymethylglutathione" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H18N3O7S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 336.342</p>
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            <p>inchikey: PIUSLWSYOYFRFR-BQBZGAKWSA-M</p>
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            <rdf:Description rdf:about="#M_S__45__HYDROXYMETHYLGLUTATHIONE_c">
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      <species metaid="M_CPD__45__590_c" id="M_CPD__45__590_c" name="(2R,3S,4S)-leucocyanidin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H14O7">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 306.2675</p>
            <p>smiles: O[C@H]1[C@@H](O)c2c(O)cc(O)cc2O[C@@H]1c1ccc(O)c(O)c1</p>
            <p>inchikey: SBZWTSHAFILOTE-SOUVJXGZSA-N</p>
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      <species metaid="M_CPD__45__548_c" id="M_CPD__45__548_c" name="S-formylglutathione" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H16N3O7S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 334.326</p>
            <p>smiles: [NH3+][C@@H](CCC(=O)N[C@@H](CSC=O)C(=O)NCC([O-])=O)C([O-])=O</p>
            <p>inchikey: FHXAGOICBFGEBF-BQBZGAKWSA-M</p>
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      <species metaid="M_CPD__45__16618_c" id="M_CPD__45__16618_c" name="L-malic semialdehyde" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H5O4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 117.0806</p>
            <p>smiles: [H]C(=O)[C@H](O)CC([O-])=O</p>
            <p>inchikey: QWHDXIUUXWGQME-GSVOUGTGSA-M</p>
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        <annotation>
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            <rdf:Description rdf:about="#M_CPD__45__16618_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C4H6O4/c5-2-3(6)1-4(7)8/h2-3,6H,1H2,(H,7,8)/p-1/t3-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_2C__45__METH__45__D__45__ERYTHRITOL__45__CYCLODIPHOSPHATE_c" id="M_2C__45__METH__45__D__45__ERYTHRITOL__45__CYCLODIPHOSPHATE_c" name="2-C-methyl-D-erythritol-2,4-cyclodiphosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H10O9P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 276.0761</p>
            <p>smiles: C[C@@]1(CO)OP([O-])(=O)OP([O-])(=O)OC[C@H]1O</p>
            <p>inchikey: SFRQRNJMIIUYDI-UHNVWZDZSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_2C__45__METH__45__D__45__ERYTHRITOL__45__CYCLODIPHOSPHATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C5H12O9P2/c1-5(3-6)4(7)2-12-15(8,9)14-16(10,11)13-5/h4,6-7H,2-3H2,1H3,(H,8,9)(H,10,11)/p-2/t4-,5+/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_2__45__PHOSPHO__45__4__45__CYTIDINE__45__5__45__DIPHOSPHO__45__2__45__C__45__MET_c" id="M_2__45__PHOSPHO__45__4__45__CYTIDINE__45__5__45__DIPHOSPHO__45__2__45__C__45__MET_c" name="2-phospho-4-(cytidine 5&apos;-diphospho)-2-C-methyl-D-erythritol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C14H22N3O17P3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 597.2579</p>
            <p>smiles: C[C@@](CO)(OP([O-])([O-])=O)[C@H](O)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n1ccc(N)nc1=O</p>
            <p>inchikey: HTJXTKBIUVFUAR-XHIBXCGHSA-J</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_2__45__PHOSPHO__45__4__45__CYTIDINE__45__5__45__DIPHOSPHO__45__2__45__C__45__MET_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C14H26N3O17P3/c1-14(6-18,33-35(23,24)25)8(19)5-31-37(28,29)34-36(26,27)30-4-7-10(20)11(21)12(32-7)17-3-2-9(15)16-13(17)22/h2-3,7-8,10-12,18-21H,4-6H2,1H3,(H,26,27)(H,28,29)(H2,15,16,22)(H2,23,24,25)/p-4/t7-,8-,10-,11-,12-,14+/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_cleaved__45__lipoprotein__45__signal__45__peptide_c" id="M_cleaved__45__lipoprotein__45__signal__45__peptide_c" name="a cleaved lipoprotein signal peptide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__591_c" id="M_CPD__45__591_c" name="cyanidin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H9O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 285.2289</p>
            <p>smiles: Oc1cc([O-])c2cc([O-])c([o+]c2c1)-c1ccc(O)c(O)c1</p>
            <p>inchikey: VEVZSMAEJFVWIL-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__591_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C15H10O6/c16-8-4-11(18)9-6-13(20)15(21-14(9)5-8)7-1-2-10(17)12(19)3-7/h1-6H,(H4-,16,17,18,19,20)/p-1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_DIACETYL_c" id="M_DIACETYL_c" name="diacetyl" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H6O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 86.0892</p>
            <p>smiles: CC(=O)C(C)=O</p>
            <p>inchikey: QSJXEFYPDANLFS-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_DIACETYL_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C4H6O2/c1-3(5)4(2)6/h1-2H3"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_2__45__ACETO__45__LACTATE_c" id="M_2__45__ACETO__45__LACTATE_c" name="(S)-2-acetolactate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H7O4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 131.1072</p>
            <p>smiles: CC(=O)[C@](C)(O)C([O-])=O</p>
            <p>inchikey: NMDWGEGFJUBKLB-YFKPBYRVSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_2__45__ACETO__45__LACTATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C5H8O4/c1-3(6)5(2,9)4(7)8/h9H,1-2H3,(H,7,8)/p-1/t5-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CREATINE_c" id="M_CREATINE_c" name="creatine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9N3O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 131.1332</p>
            <p>smiles: CN(CC([O-])=O)C(N)=[NH2+]</p>
            <p>inchikey: CVSVTCORWBXHQV-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CREATINE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C4H9N3O2/c1-7(4(5)6)2-3(8)9/h2H2,1H3,(H3,5,6)(H,8,9)"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_SARCOSINE_c" id="M_SARCOSINE_c" name="sarcosine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 89.0932</p>
            <p>smiles: C[NH2+]CC([O-])=O</p>
            <p>inchikey: FSYKKLYZXJSNPZ-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_SARCOSINE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C3H7NO2/c1-4-2-3(5)6/h4H,2H2,1H3,(H,5,6)"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CREATINE__45__P_c" id="M_CREATINE__45__P_c" name="creatine-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H8N3O5P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 209.0983</p>
            <p>smiles: CN(CC([O-])=O)C(=[NH2+])NP([O-])([O-])=O</p>
            <p>inchikey: DRBBFCLWYRJSJZ-UHFFFAOYSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CREATINE__45__P_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C4H10N3O5P/c1-7(2-3(8)9)4(5)6-13(10,11)12/h2H2,1H3,(H,8,9)(H4,5,6,10,11,12)/p-2"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Charged__45__fMET__45__tRNAs_c" id="M_Charged__45__fMET__45__tRNAs_c" name="an N-formyl-L-methionylaminoacyl-tRNA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_L__45__Methionylaminoacyl__45__tRNAs_c" id="M_L__45__Methionylaminoacyl__45__tRNAs_c" name="a L-methionylaminoacyl-tRNA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_FORMYL__45__L__45__METHIONYL__45__PEPTIDE_c" id="M_FORMYL__45__L__45__METHIONYL__45__PEPTIDE_c" name="a [protein] N-terminal-formyl-L-methionine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H16N4O6R3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_METHIONYL__45__PEPTIDE_c" id="M_METHIONYL__45__PEPTIDE_c" name="a [protein] N-terminal L-methionine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H16N4O5R3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__5821_c" id="M_CPD__45__5821_c" name="2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H5N4O5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 201.1175</p>
            <p>smiles: NC(=O)NC1=NC(=O)NC1(O)C([O-])=O</p>
            <p>inchikey: WHKYNCPIXMNTRQ-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__5821_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C5H6N4O5/c6-3(12)7-1-5(14,2(10)11)9-4(13)8-1/h14H,(H,10,11)(H4,6,7,8,9,12,13)/p-1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_5__45__HYDROXYISOURATE_c" id="M_5__45__HYDROXYISOURATE_c" name="5-hydroxyisourate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4N4O4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 184.1097</p>
            <p>smiles: OC12NC(=O)NC1=NC(=O)NC2=O</p>
            <p>inchikey: LTQYPAVLAYVKTK-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_5__45__HYDROXYISOURATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C5H4N4O4/c10-2-5(13)1(6-3(11)8-2)7-4(12)9-5/h13H,(H3,6,7,8,9,10,11,12)"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_D__45__RIBULOSE_c" id="M_D__45__RIBULOSE_c" name="D-ribulose" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 150.1299</p>
            <p>smiles: OC[C@@H](O)[C@@H](O)C(=O)CO</p>
            <p>inchikey: ZAQJHHRNXZUBTE-NQXXGFSBSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_D__45__RIBULOSE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C5H10O5/c6-1-3(8)5(10)4(9)2-7/h3,5-8,10H,1-2H2/t3-,5-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_HX_c" id="M_HX_c" name="HX" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [F,Cl,Br,I-]</p>
          </body>
        </notes>
      </species>
      <species metaid="M_RIBITOL_c" id="M_RIBITOL_c" name="ribitol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_RX_c" id="M_RX_c" name="RX" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="RX">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [*]*</p>
          </body>
        </notes>
      </species>
      <species metaid="M_DIMETHYL__45__D__45__RIBITYL__45__LUMAZINE_c" id="M_DIMETHYL__45__D__45__RIBITYL__45__LUMAZINE_c" name="6,7-dimethyl-8-(1-D-ribityl)lumazine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H17N4O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 325.2978</p>
            <p>smiles: Cc1nc2c(nc(=O)[n-]c2=O)n(C[C@H](O)[C@H](O)[C@H](O)CO)c1C</p>
            <p>inchikey: SXDXRJZUAJBNFL-XKSSXDPKSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_DIMETHYL__45__D__45__RIBITYL__45__LUMAZINE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C13H18N4O6/c1-5-6(2)17(3-7(19)10(21)8(20)4-18)11-9(14-5)12(22)16-13(23)15-11/h7-8,10,18-21H,3-4H2,1-2H3,(H,16,22,23)/p-1/t7-,8+,10-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_AMINO__45__RIBOSYLAMINO__45__1H__45__3H__45__PYR__45__DIONE_c" id="M_AMINO__45__RIBOSYLAMINO__45__1H__45__3H__45__PYR__45__DIONE_c" name="5-amino-6-(D-ribitylamino)uracil" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H16N4O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 276.2465</p>
            <p>smiles: Nc1c(NC[C@H](O)[C@H](O)[C@H](O)CO)[nH]c(=O)[nH]c1=O</p>
            <p>inchikey: XKQZIXVJVUPORE-RPDRRWSUSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_AMINO__45__RIBOSYLAMINO__45__1H__45__3H__45__PYR__45__DIONE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C9H16N4O6/c10-5-7(12-9(19)13-8(5)18)11-1-3(15)6(17)4(16)2-14/h3-4,6,14-17H,1-2,10H2,(H3,11,12,13,18,19)/t3-,4+,6-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_S__45__Substituted__45__Glutathione_c" id="M_S__45__Substituted__45__Glutathione_c" name="a glutathione-toxin conjugate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H15N3O6SR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [NH3+][C@@H](CCC(=O)N[C@@H](CS[*])C(=O)NCC([O-])=O)C([O-])=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_CL__45___c" id="M_CL__45___c" name="chloride" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="Cl">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 35.454</p>
            <p>smiles: [Cl-]</p>
            <p>inchikey: VEXZGXHMUGYJMC-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CL__45___c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/ClH/h1H/p-1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_FMN_c" id="M_FMN_c" name="FMN" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C17H18N4O9P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 453.3216</p>
            <p>smiles: Cc1cc2nc3c(nc(=O)[n-]c3=O)n(C[C@H](O)[C@H](O)[C@H](O)COP([O-])([O-])=O)c2cc1C</p>
            <p>inchikey: ANKZYBDXHMZBDK-SCRDCRAPSA-K</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_FMN_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C17H21N4O9P/c1-7-3-9-10(4-8(7)2)21(15-13(18-9)16(25)20-17(26)19-15)5-11(22)14(24)12(23)6-30-31(27,28)29/h3-4,11-12,14,22-24H,5-6H2,1-2H3,(H3,20,25,26,27,28,29)/p-3/t11-,12+,14-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_S__45__24__45__DINITROPHENYLGLUTATHIONE_c" id="M_S__45__24__45__DINITROPHENYLGLUTATHIONE_c" name="2,4-dinitrophenyl-S-glutathione" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H18N5O10S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 472.407</p>
            <p>smiles: [NH3+][C@@H](CCC(=O)N[C@@H](CSc1ccc(cc1[N+]([O-])=O)[N+]([O-])=O)C(=O)NCC([O-])=O)C([O-])=O</p>
            <p>inchikey: FXEUKVKGTKDDIQ-UWVGGRQHSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_S__45__24__45__DINITROPHENYLGLUTATHIONE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C16H19N5O10S/c17-9(16(26)27)2-4-13(22)19-10(15(25)18-6-14(23)24)7-32-12-3-1-8(20(28)29)5-11(12)21(30)31/h1,3,5,9-10H,2,4,6-7,17H2,(H,18,25)(H,19,22)(H,23,24)(H,26,27)/p-1/t9-,10-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_S__45__ALLANTOIN_c" id="M_S__45__ALLANTOIN_c" name="(S)-(+)-allantoin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H6N4O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 158.1154</p>
            <p>smiles: NC(=O)N[C@H]1NC(=O)NC1=O</p>
            <p>inchikey: POJWUDADGALRAB-SFOWXEAESA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_S__45__ALLANTOIN_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C4H6N4O3/c5-3(10)6-1-2(9)8-4(11)7-1/h1H,(H3,5,6,10)(H2,7,8,9,11)/t1-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_BETAINE__45__ALDEHYDE__45__HYDRATE_c" id="M_BETAINE__45__ALDEHYDE__45__HYDRATE_c" name="betaine aldehyde hydrate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H14NO2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 120.1696</p>
            <p>smiles: C[N+](C)(C)CC(O)O</p>
            <p>inchikey: HEHORKLRCFPRON-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_BETAINE__45__ALDEHYDE__45__HYDRATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C5H14NO2/c1-6(2,3)4-5(7)8/h5,7-8H,4H2,1-3H3/q+1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__6082_c" id="M_CPD__45__6082_c" name="3-aminopropanal" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C3H8NO">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 74.1012</p>
            <p>smiles: [H]C(=O)CC[NH3+]</p>
            <p>inchikey: PCXDJQZLDDHMGX-UHFFFAOYSA-O</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__6082_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C3H7NO/c4-2-1-3-5/h3H,1-2,4H2/p+1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CYCLOARTENOL_c" id="M_CYCLOARTENOL_c" name="cycloartenol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H50O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 426.7174</p>
            <p>smiles: [H][C@@]12CC[C@]3([H])[C@]4(C[C@@]14CC[C@]1(C)[C@H](CC[C@@]21C)C(C)CCC=C(C)C)CC[C@H](O)C3(C)C</p>
            <p>inchikey: ONQRKEUAIJMULO-SPBTXPORSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CYCLOARTENOL_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C30H50O/c1-20(2)9-8-10-21(3)22-13-15-28(7)24-12-11-23-26(4,5)25(31)14-16-29(23)19-30(24,29)18-17-27(22,28)6/h9,21-25,31H,8,10-19H2,1-7H3/t21?,22-,23+,24+,25+,27-,28+,29-,30+/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
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          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CYCLOEUCALENOL_c" id="M_CYCLOEUCALENOL_c" name="cycloeucalenol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H50O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 426.7174</p>
            <p>smiles: [H][C@@]12CC[C@]3([H])[C@@]4(C[C@]14CC[C@H](O)[C@H]2C)CC[C@]1(C)[C@H](CC[C@@]31C)[C@H](C)CCC(=C)C(C)C</p>
            <p>inchikey: HUNLTIZKNQDZEI-PGFZVWMDSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CYCLOEUCALENOL_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C30H50O/c1-19(2)20(3)8-9-21(4)23-12-14-28(7)26-11-10-24-22(5)25(31)13-15-29(24)18-30(26,29)17-16-27(23,28)6/h19,21-26,31H,3,8-18H2,1-2,4-7H3/t21-,22+,23-,24+,25+,26+,27-,28+,29-,30+/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_3__45__HYDROXY__45__PROPIONYL__45__COA_c" id="M_3__45__HYDROXY__45__PROPIONYL__45__COA_c" name="3-hydroxypropanoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C24H36N7O18P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 835.567</p>
            <p>smiles: CC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12)[C@@H](O)C(=O)NCCC(=O)NCCSC(=O)CCO</p>
            <p>inchikey: BERBFZCUSMQABM-IEXPHMLFSA-J</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_3__45__HYDROXY__45__PROPIONYL__45__COA_c">
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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        </annotation>
      </species>
      <species metaid="M_ACRYLYL__45__COA_c" id="M_ACRYLYL__45__COA_c" name="acryloyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C24H34N7O17P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 817.552</p>
            <p>smiles: CC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12)[C@@H](O)C(=O)NCCC(=O)NCCSC(=O)C=C</p>
            <p>inchikey: POODSGUMUCVRTR-IEXPHMLFSA-J</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_ACRYLYL__45__COA_c">
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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        </annotation>
      </species>
      <species metaid="M_D__45__Ribofuranose_c" id="M_D__45__Ribofuranose_c" name="D-ribofuranose" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 150.1299</p>
            <p>smiles: OC[C@H]1OC(O)[C@H](O)[C@@H]1O</p>
            <p>inchikey: HMFHBZSHGGEWLO-SOOFDHNKSA-N</p>
          </body>
        </notes>
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            <rdf:Description rdf:about="#M_D__45__Ribofuranose_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C5H10O5/c6-1-2-3(7)4(8)5(9)10-2/h2-9H,1H2/t2-,3-,4-,5?/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_DGMP_c" id="M_DGMP_c" name="dGMP" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O7P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 345.2064</p>
            <p>smiles: Nc1nc2n(cnc2c(=O)[nH]1)[C@H]1C[C@H](O)[C@@H](COP([O-])([O-])=O)O1</p>
            <p>inchikey: LTFMZDNNPPEQNG-KVQBGUIXSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_DGMP_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C10H14N5O7P/c11-10-13-8-7(9(17)14-10)12-3-15(8)6-1-4(16)5(22-6)2-21-23(18,19)20/h3-6,16H,1-2H2,(H2,18,19,20)(H3,11,13,14,17)/p-2/t4-,5+,6+/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_DGTP_c" id="M_DGTP_c" name="dGTP" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O13P3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 503.1515</p>
            <p>smiles: Nc1nc2n(cnc2c(=O)[nH]1)[C@H]1C[C@H](O)[C@@H](COP([O-])(=O)OP([O-])(=O)OP([O-])([O-])=O)O1</p>
            <p>inchikey: HAAZLUGHYHWQIW-KVQBGUIXSA-J</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_DGTP_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C10H16N5O13P3/c11-10-13-8-7(9(17)14-10)12-3-15(8)6-1-4(16)5(26-6)2-25-30(21,22)28-31(23,24)27-29(18,19)20/h3-6,16H,1-2H2,(H,21,22)(H,23,24)(H2,18,19,20)(H3,11,13,14,17)/p-4/t4-,5+,6+/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_3__45__HYDROXY__45__DOCOSAPENTAENOYL__45__ACP_c" id="M_3__45__HYDROXY__45__DOCOSAPENTAENOYL__45__ACP_c" name="a (3R)-3-hydroxy-docosapentaenoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_3__45__OXO__45__EICOSAPENTAENOYL__45__ACP_c" id="M_3__45__OXO__45__EICOSAPENTAENOYL__45__ACP_c" name="a 3-oxo-docosapentaenoyl [acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Supercoiled__45__Duplex__45__DNAs_c" id="M_Supercoiled__45__Duplex__45__DNAs_c" name="a supercoiled duplex DNA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_PHENYL_c" id="M_PHENYL_c" name="acetophenone" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H8O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 120.1485</p>
            <p>smiles: CC(=O)c1ccccc1</p>
            <p>inchikey: KWOLFJPFCHCOCG-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_PHENYL_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C8H8O/c1-7(9)8-5-3-2-4-6-8/h2-6H,1H3"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_S__45__1__45__PHENYLETHANOL_c" id="M_S__45__1__45__PHENYLETHANOL_c" name="(S)-1-phenylethanol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H10O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 122.1644</p>
            <p>smiles: C[C@H](O)c1ccccc1</p>
            <p>inchikey: WAPNOHKVXSQRPX-ZETCQYMHSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_S__45__1__45__PHENYLETHANOL_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C8H10O/c1-7(9)8-5-3-2-4-6-8/h2-7,9H,1H3/t7-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Butanoyl__45__ACPs_c" id="M_Butanoyl__45__ACPs_c" name="a butyryl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7OSR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CCCC(=O)S[*]</p>
          </body>
        </notes>
      </species>
      <species metaid="M_3__45__oxo__45__hexanoyl__45__ACPs_c" id="M_3__45__oxo__45__hexanoyl__45__ACPs_c" name="a 3-oxo-hexanoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9O2SR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CCCC(=O)CC(=O)S[*]</p>
          </body>
        </notes>
      </species>
      <species metaid="M_3__45__Oxo__45__octanoyl__45__ACPs_c" id="M_3__45__Oxo__45__octanoyl__45__ACPs_c" name="a 3-oxo-octanoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H13O2SR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CCCCCC(=O)CC(=O)S[*]</p>
          </body>
        </notes>
      </species>
      <species metaid="M_Hexanoyl__45__ACPs_c" id="M_Hexanoyl__45__ACPs_c" name="a hexanoyl-[acyl-carrier-protein]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11OSR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CCCCCC(=O)S[*]</p>
          </body>
        </notes>
      </species>
      <species metaid="M_Octanoyl__45__ACPs_c" id="M_Octanoyl__45__ACPs_c" name="an octanoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15OSR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CCCCCCCC(=O)S[*]</p>
          </body>
        </notes>
      </species>
      <species metaid="M_3__45__oxo__45__decanoyl__45__ACPs_c" id="M_3__45__oxo__45__decanoyl__45__ACPs_c" name="a 3-oxo-decanoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H17O2SR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CCCCCCCC(=O)CC(=O)S[*]</p>
          </body>
        </notes>
      </species>
      <species metaid="M_3__45__oxo__45__dodecanoyl__45__ACPs_c" id="M_3__45__oxo__45__dodecanoyl__45__ACPs_c" name="a 3-oxo-dodecanoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H21O2SR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CCCCCCCCCC(=O)CC(=O)S[*]</p>
          </body>
        </notes>
      </species>
      <species metaid="M_Decanoyl__45__ACPs_c" id="M_Decanoyl__45__ACPs_c" name="a decanoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H19OSR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CCCCCCCCCC(=O)S[*]</p>
          </body>
        </notes>
      </species>
      <species metaid="M_Dodecanoyl__45__ACPs_c" id="M_Dodecanoyl__45__ACPs_c" name="a dodecanoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C23H43N2O8PRS">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_3__45__oxo__45__myristoyl__45__ACPs_c" id="M_3__45__oxo__45__myristoyl__45__ACPs_c" name="a 3-oxo-myristoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H25O2SR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CCCCCCCCCCCC(=O)CC(=O)S[*]</p>
          </body>
        </notes>
      </species>
      <species metaid="M_CPD__45__7496_c" id="M_CPD__45__7496_c" name="prolycopene" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C40H56">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 536.8726</p>
            <p>smiles: CC(C)=CCC\C(C)=C\C=C/C(/C)=C\C=C\C(\C)=C\C=C\C=C(/C)\C=C\C=C(\C)/C=C\C=C(/C)CCC=C(C)C</p>
            <p>inchikey: OAIJSZIZWZSQBC-BYUNHUQQSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__7496_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C40H56/c1-33(2)19-13-23-37(7)27-17-31-39(9)29-15-25-35(5)21-11-12-22-36(6)26-16-30-40(10)32-18-28-38(8)24-14-20-34(3)4/h11-12,15-22,25-32H,13-14,23-24H2,1-10H3/b12-11+,25-15+,26-16+,31-17-,32-18-,35-21+,36-22+,37-27+,38-28+,39-29-,40-30-"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Galactosyl__45__galactosyl__45__diacyl__45__glycerols_c" id="M_Galactosyl__45__galactosyl__45__diacyl__45__glycerols_c" name="an &amp;alpha;,&amp;beta;-digalactosyldiacylglycerol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H26O15R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_D__45__Galactosyl__45__12__45__diacyl__45__glycerols_c" id="M_D__45__Galactosyl__45__12__45__diacyl__45__glycerols_c" name="a 1,2-diacyl-3-O-(&amp;beta;-D-galactopyranosyl)-sn-glycerol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H16O10R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: OC[C@H]1O[C@@H](OC[C@@H](COC([*])=O)OC([*])=O)[C@H](O)[C@@H](O)[C@H]1O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_CPD__45__13172_c" id="M_CPD__45__13172_c" name="6-hydroxy-2-cyclohexen-one-carboxylate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H7O4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 155.1286</p>
            <p>smiles: OC1(C=CCCC1=O)C([O-])=O</p>
            <p>inchikey: WEZWWZKUBQCMBL-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__13172_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C7H8O4/c8-5-3-1-2-4-7(5,11)6(9)10/h2,4,11H,1,3H2,(H,9,10)/p-1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__13174_c" id="M_CPD__45__13174_c" name="salicyl-6-hydroxy-2-cyclohexene-on-oyl" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H14O5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 262.258</p>
            <p>smiles: Oc1ccccc1COC(=O)C1(O)C=CCCC1=O</p>
            <p>inchikey: WYYMYYOXCOEMCU-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__13174_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C14H14O5/c15-11-6-2-1-5-10(11)9-19-13(17)14(18)8-4-3-7-12(14)16/h1-2,4-6,8,15,18H,3,7,9H2"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__173_c" id="M_CPD__45__173_c" name="salicyl alcohol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H8O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 124.1372</p>
            <p>smiles: OCc1ccccc1O</p>
            <p>inchikey: CQRYARSYNCAZFO-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__173_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C7H8O2/c8-5-6-3-1-2-4-7(6)9/h1-4,8-9H,5H2"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__13122_c" id="M_CPD__45__13122_c" name="4-deoxy-L-threo-hex-4-enopyranuronate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H7O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 175.1167</p>
            <p>smiles: OC1OC(=C[C@H](O)[C@H]1O)C([O-])=O</p>
            <p>inchikey: IAKKJSVSFCTLRY-BAKTXGBYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__13122_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C6H8O6/c7-2-1-3(5(9)10)12-6(11)4(2)8/h1-2,4,6-8,11H,(H,9,10)/p-1/t2-,4+,6?/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__13188_c" id="M_CPD__45__13188_c" name="&amp;beta;-D-Glcp-(1&amp;rarr;4)-&amp;alpha;-L-Rhap-(1&amp;rarr;3)-&amp;beta;-D-Glcp" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H32O15">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 488.4377</p>
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        <notes>
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            <p>mass: 645.5391</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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        <notes>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 92.0938</p>
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        </notes>
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      <species metaid="M_Alkyl__45__acetyl__45__glycero__45__phosphocholines_c" id="M_Alkyl__45__acetyl__45__glycero__45__phosphocholines_c" name="a 2-acetyl-1-alkyl-sn-glycero-3-phosphocholine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H21NO7PR">
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 177.1812</p>
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      <species metaid="M_RNASE__45__III__45__PROCESSING__45__PRODUCT__45__MRNA_c" id="M_RNASE__45__III__45__PROCESSING__45__PRODUCT__45__MRNA_c" name="RNase III processing product mRNA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
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          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      <species metaid="M_L__45__CANALINE_c" id="M_L__45__CANALINE_c" name="L-canaline" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H10N2O3">
        <notes>
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            <p>mass: 134.1338</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 434.505</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 289.2657</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 432.4891</p>
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            <p>inchikey: YZKFNNQAEBNCEN-KTKRTIGZSA-L</p>
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            <p>mass: 734.0389</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 495.6301</p>
            <p>smiles: CCCCCCCCCCCCCCCC(=O)OC[C@@H](O)COP([O-])(=O)OCC[N+](C)(C)C</p>
            <p>inchikey: ASWBNKHCZGQVJV-HSZRJFAPSA-N</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 744.0337</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 479.5876</p>
            <p>smiles: CCCCCCCC\C=C/CCCCCCCC(=O)OC[C@@H](O)COP([O-])(=O)OCC[NH3+]</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 281.454</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      <species metaid="M_Protein__45__tyrosine__45__phosphates_c" id="M_Protein__45__tyrosine__45__phosphates_c" name="a [protein]-L-tyrosine phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H10N2O6PR2">
        <notes>
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      <species metaid="M_PROTOPORPHYRIN_IX_c" id="M_PROTOPORPHYRIN_IX_c" name="protoporphyrin IX" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C34H32N4O4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 560.6434</p>
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      <species metaid="M_PROTOHEME_c" id="M_PROTOHEME_c" name="ferroheme b" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C34H30FeN4O4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 614.472</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CCCCCCCCCCCCCC(=O)CC(=O)S[*]</p>
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      <species metaid="M_34__45__DIHYDROXYPHENYLACETALDEHYDE_c" id="M_34__45__DIHYDROXYPHENYLACETALDEHYDE_c" name="3,4-dihydroxyphenylacetaldehyde" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H8O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 152.1473</p>
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      <species metaid="M_DOPAMINE_c" id="M_DOPAMINE_c" name="dopamine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H12NO2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 154.1858</p>
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            <p>inchikey: VYFYYTLLBUKUHU-UHFFFAOYSA-O</p>
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            <rdf:Description rdf:about="#M_DOPAMINE_c">
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          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 233.242</p>
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      <species metaid="M_CPD__45__464_c" id="M_CPD__45__464_c" name="prephytoene diphosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C40H65O7P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 719.8891</p>
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      <species metaid="M_Hex__45__2__45__enoyl__45__ACPs_c" id="M_Hex__45__2__45__enoyl__45__ACPs_c" name="a trans hex-2-enoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9OSR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CCC\C=C\C(=O)S[*]</p>
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      <species metaid="M_CPD__45__237_c" id="M_CPD__45__237_c" name="indole-3-acetamide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H10N2O">
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            <p>mass: 174.1992</p>
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      <species metaid="M_2__45__Octenoyl__45__ACPs_c" id="M_2__45__Octenoyl__45__ACPs_c" name="a trans oct-2-enoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H33N2O8PRS">
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            <p>mass: 603.3263</p>
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            <p>mass: 258.121</p>
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            <p>smiles: [*]C(=O)OCC(COC([*])=O)OC([*])=O</p>
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            <p>mass: 180.1559</p>
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      <species metaid="M_TRANS__45__3__45__METHYL__45__GLUTACONYL__45__COA_c" id="M_TRANS__45__3__45__METHYL__45__GLUTACONYL__45__COA_c" name="3-methylglutaconyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C27H37N7O19P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 888.607</p>
            <p>smiles: [H]\C(=C(\C)CC([O-])=O)C(=O)SCC[NH+]=C([O-])CC[NH+]=C([O-])[C@]([H])(O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@@]1([H])O[C@@]([H])(n2cnc3c(N)ncnc23)[C@]([H])(O)[C@]1([H])OP([O-])([O-])=O</p>
            <p>inchikey: GXKSHRDAHFLWPN-RKYLSHMCSA-I</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_TRANS__45__3__45__METHYL__45__GLUTACONYL__45__COA_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C27H42N7O19P3S/c1-14(8-17(36)37)9-18(38)57-7-6-29-16(35)4-5-30-25(41)22(40)27(2,3)11-50-56(47,48)53-55(45,46)49-10-15-21(52-54(42,43)44)20(39)26(51-15)34-13-33-19-23(28)31-12-32-24(19)34/h9,12-13,15,20-22,26,39-40H,4-8,10-11H2,1-3H3,(H,29,35)(H,30,41)(H,36,37)(H,45,46)(H,47,48)(H2,28,31,32)(H2,42,43,44)/p-5/b14-9+/t15-,20-,21-,22+,26-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_SINAPATE_c" id="M_SINAPATE_c" name="sinapate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H11O5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 223.2026</p>
            <p>smiles: COc1cc(\C=C\C([O-])=O)cc(OC)c1O</p>
            <p>inchikey: PCMORTLOPMLEFB-ONEGZZNKSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_SINAPATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C11H12O5/c1-15-8-5-7(3-4-10(12)13)6-9(16-2)11(8)14/h3-6,14H,1-2H3,(H,12,13)/p-1/b4-3+"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_5__45__HYDROXY__45__FERULIC__45__ACID_c" id="M_5__45__HYDROXY__45__FERULIC__45__ACID_c" name="5-hydroxyferulate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H9O5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 209.176</p>
            <p>smiles: COc1cc(C=CC([O-])=O)cc(O)c1O</p>
            <p>inchikey: YFXWTVLDSKSYLW-NSCUHMNNSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_5__45__HYDROXY__45__FERULIC__45__ACID_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C10H10O5/c1-15-8-5-6(2-3-9(12)13)4-7(11)10(8)14/h2-5,11,14H,1H3,(H,12,13)/p-1/b3-2+"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_BENZENE__45__NO2_c" id="M_BENZENE__45__NO2_c" name="nitrobenzene" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5NO2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 123.1094</p>
            <p>smiles: [O-][N+](=O)c1ccccc1</p>
            <p>inchikey: LQNUZADURLCDLV-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_BENZENE__45__NO2_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C6H5NO2/c8-7(9)6-4-2-1-3-5-6/h1-5H"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CATECHOL_c" id="M_CATECHOL_c" name="catechol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H6O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 110.1106</p>
            <p>smiles: Oc1ccccc1O</p>
            <p>inchikey: YCIMNLLNPGFGHC-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CATECHOL_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C6H6O2/c7-5-3-1-2-4-6(5)8/h1-4,7-8H"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_BCAA__45__dehydrogenase__45__2MB__45__DH__45__lipoyl_c" id="M_BCAA__45__dehydrogenase__45__2MB__45__DH__45__lipoyl_c" name="an [apo BCAA dehydrogenase E2 protein] N6-S-[2-methylbutanoyl]dihydrolipoyl-L-lysine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H23O2S2R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_DNA__45__Holder_c" id="M_DNA__45__Holder_c" name="DNA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Aryl__45__sulfates_c" id="M_Aryl__45__sulfates_c" name="an aryl sulfate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_RNA__45__DNA__45__hybrids_c" id="M_RNA__45__DNA__45__hybrids_c" name="a RNA-DNA hybrid" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Aryl__45__Alcohol_c" id="M_Aryl__45__Alcohol_c" name="a phenol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="HOR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: O[*]</p>
          </body>
        </notes>
      </species>
      <species metaid="M_CPD0__45__2353_c" id="M_CPD0__45__2353_c" name="a tRNA precursor with a short 3&apos; extension" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_DIETHYLTHIOPHOSPHATE_c" id="M_DIETHYLTHIOPHOSPHATE_c" name="diethylthiophosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H10O3PS">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 169.16</p>
            <p>smiles: CCOP([O-])(=S)OCC</p>
            <p>inchikey: PKUWKAXTAVNIJR-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_DIETHYLTHIOPHOSPHATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C4H11O3PS/c1-3-6-8(5,9)7-4-2/h3-4H2,1-2H3,(H,5,9)/p-1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD0__45__2352_c" id="M_CPD0__45__2352_c" name="a tRNA precursor with a 5&apos; extension and a short 3&apos; extension" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_PARATHION_c" id="M_PARATHION_c" name="parathion" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H14NO5PS">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 291.261</p>
            <p>smiles: CCOP(=S)(OCC)Oc1ccc(cc1)[N+]([O-])=O</p>
            <p>inchikey: LCCNCVORNKJIRZ-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_PARATHION_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C10H14NO5PS/c1-3-14-17(18,15-4-2)16-10-7-5-9(6-8-10)11(12)13/h5-8H,3-4H2,1-2H3"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_LUTEOLIN__45__7__45__O__45__BETA__45__D__45__DIGLUCURONIDE_c" id="M_LUTEOLIN__45__7__45__O__45__BETA__45__D__45__DIGLUCURONIDE_c" name="luteolin 7-O-&amp;beta;-D-diglucuronide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C27H23O18">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 635.4624</p>
            <p>smiles: O[C@@H]1[C@@H](O)[C@H](O[C@@H]2[C@@H](O)[C@H](O)[C@H](O[C@H]2Oc2cc([O-])c3c(c2)oc(cc3=O)-c2ccc(O)c(O)c2)C([O-])=O)O[C@@H]([C@H]1O)C([O-])=O</p>
            <p>inchikey: PBBVWJQPAZYQDB-DBFWEQBMSA-K</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_LUTEOLIN__45__7__45__O__45__BETA__45__D__45__DIGLUCURONIDE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C27H26O18/c28-9-2-1-7(3-10(9)29)13-6-12(31)15-11(30)4-8(5-14(15)42-13)41-27-23(19(35)18(34)22(44-27)25(39)40)45-26-20(36)16(32)17(33)21(43-26)24(37)38/h1-6,16-23,26-30,32-36H,(H,37,38)(H,39,40)/p-3/t16-,17-,18-,19-,20+,21-,22-,23+,26-,27+/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_3__45__Prime__45__Ribonucleoside__45__Monophosphates_c" id="M_3__45__Prime__45__Ribonucleoside__45__Monophosphates_c" name="a ribonucleoside 3&apos;-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/>
      <species metaid="M_Aryl__45__Dialkyl__45__Phosphate_c" id="M_Aryl__45__Dialkyl__45__Phosphate_c" name="an aryl dialkyl phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Dialkyl__45__phosphates_c" id="M_Dialkyl__45__phosphates_c" name="a dialkyl phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_3__45__phosphooligonucleotides_c" id="M_3__45__phosphooligonucleotides_c" name="a 3&apos; phosphooligonucleotide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD0__45__2350_c" id="M_CPD0__45__2350_c" name="a polycistronic tRNA precursor" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Aryl__45__Sulfate_c" id="M_Aryl__45__Sulfate_c" name="a phenol sulfate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="O4SR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [O-]S(=O)(=O)O[*]</p>
          </body>
        </notes>
      </species>
      <species metaid="M_tRNA__45__Introns_c" id="M_tRNA__45__Introns_c" name="a tRNA intron with a 2&apos;,3&apos;-cyclic phosphate and a 5&apos;-hydroxyl terminus" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Pre__45__tRNA__45__3__45__prime__45__half__45__molecules_c" id="M_Pre__45__tRNA__45__3__45__prime__45__half__45__molecules_c" name="a 3&apos; half-tRNA molecule with a hydroxyl on its 5&apos; end" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Pre__45__tRNA__45__5__45__prime__45__half__45__molecules_c" id="M_Pre__45__tRNA__45__5__45__prime__45__half__45__molecules_c" name="a 5&apos; half-tRNA molecule with a 2&apos;,3&apos; cyclic phosphate on its 3&apos; end" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Protein__45__L__45__serine__45__or__45__L__45__threonine_c" id="M_Protein__45__L__45__serine__45__or__45__L__45__threonine_c" name="a [protein]-(L-serine/L-threonine)" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C3H5NO2R3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: OC([*])[C@H]([NH2+]*)C(*)=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_CPD__45__8268_c" id="M_CPD__45__8268_c" name="dioleoyl phosphatidate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C39H71O8P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 698.9511</p>
            <p>smiles: CCCCCCCC\C=C/CCCCCCCC(=O)OCC(COP([O-])([O-])=O)OC(=O)CCCCCCC\C=C/CCCCCCCC</p>
            <p>inchikey: MHUWZNTUIIFHAS-CLFAGFIQSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__8268_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C39H73O8P/c1-3-5-7-9-11-13-15-17-19-21-23-25-27-29-31-33-38(40)45-35-37(36-46-48(42,43)44)47-39(41)34-32-30-28-26-24-22-20-18-16-14-12-10-8-6-4-2/h17-20,37H,3-16,21-36H2,1-2H3,(H2,42,43,44)/p-2/b19-17-,20-18-"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_GLYCERATE_c" id="M_GLYCERATE_c" name="D-glycerate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 105.0699</p>
            <p>smiles: OC[C@@H](O)C([O-])=O</p>
            <p>inchikey: RBNPOMFGQQGHHO-UWTATZPHSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_GLYCERATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C3H6O4/c4-1-2(5)3(6)7/h2,4-5H,1H2,(H,6,7)/p-1/t2-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_GLYCERALD_c" id="M_GLYCERALD_c" name="D-glyceraldehyde" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 90.0779</p>
            <p>smiles: [H]C(=O)[C@H](O)CO</p>
            <p>inchikey: MNQZXJOMYWMBOU-VKHMYHEASA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_GLYCERALD_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C3H6O3/c4-1-3(6)2-5/h1,3,5-6H,2H2/t3-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_diacyl__45__3__45__O__45__glucl__45__1__45__6__45__gluc__45__sn__45__glycerol_c" id="M_diacyl__45__3__45__O__45__glucl__45__1__45__6__45__gluc__45__sn__45__glycerol_c" name="a 1,2-diacyl-3-O-(&amp;beta;-D-glucopyranosyl-(1-&gt;6)-O-&amp;beta;-D-glucopyranosyl)-sn-glycerol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H26O15R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: OC[C@H]1O[C@@H](OC[C@H]2O[C@@H](OC[C@@H](COC([*])=O)OC([*])=O)[C@H](O)[C@@H](O)[C@@H]2O)[C@H](O)[C@@H](O)[C@@H]1O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_CPD__45__168_c" id="M_CPD__45__168_c" name="a 1,2-diacyl-3-O-(&amp;beta;-D-glucopyranosyl)-sn-glycerol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/>
      <species metaid="M_CPD__45__15056_c" id="M_CPD__45__15056_c" name="(2Z)-2-aminobut-2-enoate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7NO2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 101.1039</p>
            <p>smiles: [H]C(C)=C([NH3+])C([O-])=O</p>
            <p>inchikey: PAWSVPVNIXFKOS-IHWYPQMZSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__15056_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C4H7NO2/c1-2-3(5)4(6)7/h2H,5H2,1H3,(H,6,7)/b3-2-"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__16013_c" id="M_CPD__45__16013_c" name="2-iminobutanoate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7NO2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 101.1039</p>
            <p>smiles: CCC(=[NH2+])C([O-])=O</p>
            <p>inchikey: WRBRCYPPGUCRHW-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__16013_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C4H7NO2/c1-2-3(5)4(6)7/h5H,2H2,1H3,(H,6,7)"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_L__45__GAMMA__45__GLUTAMYLCYSTEINE_c" id="M_L__45__GAMMA__45__GLUTAMYLCYSTEINE_c" name="&amp;gamma;-L-glutamyl-L-cysteine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H13N2O5S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 249.265</p>
            <p>smiles: [NH3+][C@@H](CCC(=O)N[C@@H](CS)C([O-])=O)C([O-])=O</p>
            <p>inchikey: RITKHVBHSGLULN-WHFBIAKZSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_L__45__GAMMA__45__GLUTAMYLCYSTEINE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C8H14N2O5S/c9-4(7(12)13)1-2-6(11)10-5(3-16)8(14)15/h4-5,16H,1-3,9H2,(H,10,11)(H,12,13)(H,14,15)/p-1/t4-,5-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_ANTHRANILATE_c" id="M_ANTHRANILATE_c" name="anthranilate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H6NO2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 136.1286</p>
            <p>smiles: Nc1ccccc1C([O-])=O</p>
            <p>inchikey: RWZYAGGXGHYGMB-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_ANTHRANILATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C7H7NO2/c8-6-4-2-1-3-5(6)7(9)10/h1-4H,8H2,(H,9,10)/p-1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_N__45__5__45__PHOSPHORIBOSYL__45__ANTHRANILATE_c" id="M_N__45__5__45__PHOSPHORIBOSYL__45__ANTHRANILATE_c" name="N-(5-phosphoribosyl)-anthranilate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C12H13NO9P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 346.2083</p>
            <p>smiles: O[C@H]1[C@@H](O)[C@H](Nc2ccccc2C([O-])=O)O[C@@H]1COP([O-])([O-])=O</p>
            <p>inchikey: PMFMJXPRNJUYMB-GWOFURMSSA-K</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_N__45__5__45__PHOSPHORIBOSYL__45__ANTHRANILATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C12H16NO9P/c14-9-8(5-21-23(18,19)20)22-11(10(9)15)13-7-4-2-1-3-6(7)12(16)17/h1-4,8-11,13-15H,5H2,(H,16,17)(H2,18,19,20)/p-3/t8-,9-,10-,11-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Phosphoserines_c" id="M_Phosphoserines_c" name="L(or D)-O-phosphoserine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H6NO6P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 183.0577</p>
            <p>smiles: [NH3+]C(COP([O-])([O-])=O)C([O-])=O</p>
            <p>inchikey: BZQFBWGGLXLEPQ-UHFFFAOYSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_Phosphoserines_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C3H8NO6P/c4-2(3(5)6)1-10-11(7,8)9/h2H,1,4H2,(H,5,6)(H2,7,8,9)/p-2"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_L__45__Galactopyranose_c" id="M_L__45__Galactopyranose_c" name="L-galactopyranose" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 180.1559</p>
            <p>smiles: OC[C@@H]1OC(O)[C@@H](O)[C@H](O)[C@@H]1O</p>
            <p>inchikey: WQZGKKKJIJFFOK-DHVFOXMCSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_L__45__Galactopyranose_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3+,4+,5-,6?/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__6442_c" id="M_CPD__45__6442_c" name="1-O-methylsalicylate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H8O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 152.1473</p>
            <p>smiles: COC(=O)c1ccccc1O</p>
            <p>inchikey: OSWPMRLSEDHDFF-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__6442_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C8H8O3/c1-11-8(10)6-4-2-3-5-7(6)9/h2-5,9H,1H3"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Dodec__45__2__45__enoyl__45__ACPs_c" id="M_Dodec__45__2__45__enoyl__45__ACPs_c" name="a (2E)-dodec-2-enoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H21OSR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CCCCCCCCC\C=C\C(=O)S[*]</p>
          </body>
        </notes>
      </species>
      <species metaid="M_ASN__45__tRNAs_c" id="M_ASN__45__tRNAs_c" name="tRNAasn" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_ASN_c" id="M_ASN_c" name="L-asparagine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H8N2O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 132.1179</p>
            <p>smiles: NC(=O)C[C@H]([NH3+])C([O-])=O</p>
            <p>inchikey: DCXYFEDJOCDNAF-REOHCLBHSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_ASN_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C4H8N2O3/c5-2(4(8)9)1-3(6)7/h2H,1,5H2,(H2,6,7)(H,8,9)/t2-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Charged__45__ASN__45__tRNAs_c" id="M_Charged__45__ASN__45__tRNAs_c" name="an L-asparaginyl-[tRNAasn]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Tetradec__45__2__45__enoyl__45__ACPs_c" id="M_Tetradec__45__2__45__enoyl__45__ACPs_c" name="a trans tetradec-2-enoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C14H25OSR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CCCCCCCCCCC\C=C\C(=O)S[*]</p>
          </body>
        </notes>
      </species>
      <species metaid="M_Thiocarboxylated__45__MPT__45__synthases_c" id="M_Thiocarboxylated__45__MPT__45__synthases_c" name="a thiocarboxylated small subunit of molybdopterin synthase" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Carboxyadenylated__45__MPT__45__synthases_c" id="M_Carboxyadenylated__45__MPT__45__synthases_c" name="a carboxy-adenylated small subunit of molybdopterin synthase" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_GLC__45__1__45__P_c" id="M_GLC__45__1__45__P_c" name="&amp;alpha;-D-glucopyranose 1-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 258.121</p>
            <p>smiles: OC[C@H]1O[C@H](OP([O-])([O-])=O)[C@H](O)[C@@H](O)[C@@H]1O</p>
            <p>inchikey: HXXFSFRBOHSIMQ-VFUOTHLCSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_GLC__45__1__45__P_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C6H13O9P/c7-1-2-3(8)4(9)5(10)6(14-2)15-16(11,12)13/h2-10H,1H2,(H2,11,12,13)/p-2/t2-,3-,4+,5-,6-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_GDP__45__D__45__GLUCOSE_c" id="M_GDP__45__D__45__GLUCOSE_c" name="GDP-&amp;alpha;-D-glucose" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H23N5O16P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 603.3263</p>
            <p>smiles: Nc1nc2n(cnc2c(=O)[nH]1)[C@@H]1O[C@H](COP([O-])(=O)OP([O-])(=O)O[C@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O)[C@@H](O)[C@H]1O</p>
            <p>inchikey: MVMSCBBUIHUTGJ-LRJDVEEWSA-L</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_GDP__45__D__45__GLUCOSE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD0__45__2123_c" id="M_CPD0__45__2123_c" name="3-oxodecanoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H48N7O18P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 931.737</p>
            <p>smiles: CCCCCCCC(=O)CC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: AZCVXMAPLHSIKY-HSJNEKGZSA-J</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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        </annotation>
      </species>
      <species metaid="M_CPD0__45__2244_c" id="M_CPD0__45__2244_c" name="(S)-3-hydroxydecanoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H50N7O18P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 933.753</p>
            <p>smiles: CCCCCCC[C@H](O)CC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: HIVSMYZAMUNFKZ-PNPVFPMQSA-J</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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        </annotation>
      </species>
      <species metaid="M_pppGp__45__his__45__tRNAs_c" id="M_pppGp__45__his__45__tRNAs_c" name="pppGp-tRNAHis" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__499_c" id="M_CPD__45__499_c" name="(R)-mevalonate 5-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H10O7P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 225.1148</p>
            <p>smiles: C[C@@](O)(CCOP([O-])([O-])=O)CC([O-])=O</p>
            <p>inchikey: OKZYCXHTTZZYSK-ZCFIWIBFSA-K</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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              <bqbiol:isVersionOf>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__397_c" id="M_CPD__45__397_c" name="S-methyl-L-methionine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C6H14NO2S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 164.245</p>
            <p>smiles: C[S+](C)CC[C@H]([NH3+])C([O-])=O</p>
            <p>inchikey: YDBYJHTYSHBBAU-YFKPBYRVSA-O</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__35_c" id="M_CPD__45__35_c" name="4-acetamidobutanoate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H10NO3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 144.149</p>
            <p>smiles: CC(=O)NCCCC([O-])=O</p>
            <p>inchikey: UZTFMUBKZQVKLK-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__35_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C6H11NO3/c1-5(8)7-4-2-3-6(9)10/h2-4H2,1H3,(H,7,8)(H,9,10)/p-1"/>
                </rdf:Bag>
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          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__30_c" id="M_CPD__45__30_c" name="4-acetamidobutanal" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11NO2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 129.157</p>
            <p>smiles: [H]C(=O)CCCNC(C)=O</p>
            <p>inchikey: DDSLGZOYEPKPSJ-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__30_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C6H11NO2/c1-6(9)7-4-2-3-5-8/h5H,2-4H2,1H3,(H,7,9)"/>
                </rdf:Bag>
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      </species>
      <species metaid="M_S__45__GERANYLGERANYL__45__PROTEIN_c" id="M_S__45__GERANYLGERANYL__45__PROTEIN_c" name="a [protein]-S-geranylgeranyl-L-cysteine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__696_c" id="M_CPD__45__696_c" name="24-methylenecycloartanol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C31H52O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 440.744</p>
            <p>smiles: [H][C@@]1(CC[C@@]2(C)[C@]3([H])CC[C@]4([H])[C@]5(C[C@@]35CC[C@]12C)CC[C@H](O)C4(C)C)[C@H](C)CCC(=C)C(C)C</p>
            <p>inchikey: BDHQMRXFDYJGII-UEBIAWITSA-N</p>
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        </notes>
        <annotation>
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                </rdf:Bag>
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      <species metaid="M_CPD__45__4081_c" id="M_CPD__45__4081_c" name="4&amp;alpha;-methyl-5&amp;alpha;-ergosta-8,24-dien-3&amp;beta;-ol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H48O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 412.6908</p>
            <p>smiles: [H][C@@](C)(CCC(=C)C(C)C)[C@@]1([H])CC[C@@]2([H])C3=C(CC[C@]12C)[C@@]1(C)CC[C@H](O)[C@@H](C)[C@]1([H])CC3</p>
            <p>inchikey: QLDNWJOJCDIMKK-XLFBYWHPSA-N</p>
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        </notes>
        <annotation>
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                </rdf:Bag>
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      <species metaid="M_CPD__45__16015_c" id="M_CPD__45__16015_c" name="2-iminopropanoate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H5NO2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 87.0773</p>
            <p>smiles: CC(=[NH2+])C([O-])=O</p>
            <p>inchikey: DUAWRLXHCUAWMK-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
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              </bqbiol:isVersionOf>
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      </species>
      <species metaid="M_2__45__AMINOACRYLATE_c" id="M_2__45__AMINOACRYLATE_c" name="2-aminoprop-2-enoate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H5NO2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 87.0773</p>
            <p>smiles: [NH3+]C(=C)C([O-])=O</p>
            <p>inchikey: UQBOJOOOTLPNST-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_2__45__AMINOACRYLATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C3H5NO2/c1-2(4)3(5)6/h1,4H2,(H,5,6)"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
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        </annotation>
      </species>
      <species metaid="M_Protein__45__Ser__45__or__45__Thr__45__phosphate_c" id="M_Protein__45__Ser__45__or__45__Thr__45__phosphate_c" name="a [protein] (L-serine/L-threonine) phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H4NO5PR3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [O-]P([O-])(=O)OC([*])[C@H]([NH2+]*)C(*)=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_Serines_c" id="M_Serines_c" name="serine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 105.0926</p>
            <p>smiles: [NH3+][C@@H](CO)C([O-])=O</p>
            <p>inchikey: MTCFGRXMJLQNBG-REOHCLBHSA-N</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_Serines_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C3H7NO3/c4-2(1-5)3(6)7/h2,5H,1,4H2,(H,6,7)/t2-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
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      </species>
      <species metaid="M_3__45__P__45__HYDROXYPYRUVATE_c" id="M_3__45__P__45__HYDROXYPYRUVATE_c" name="3-phospho-hydroxypyruvate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C3H2O7P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 181.0192</p>
            <p>smiles: [O-]C(=O)C(=O)COP([O-])([O-])=O</p>
            <p>inchikey: LFLUCDOSQPJJBE-UHFFFAOYSA-K</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_3__45__P__45__HYDROXYPYRUVATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C3H5O7P/c4-2(3(5)6)1-10-11(7,8)9/h1H2,(H,5,6)(H2,7,8,9)/p-3"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_4__45__PHOSPHONOOXY__45__THREONINE_c" id="M_4__45__PHOSPHONOOXY__45__THREONINE_c" name="4-phospho-hydroxy-L-threonine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H8NO7P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 213.0837</p>
            <p>smiles: [NH3+][C@@H]([C@H](O)COP([O-])([O-])=O)C([O-])=O</p>
            <p>inchikey: FKHAKIJOKDGEII-GBXIJSLDSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_4__45__PHOSPHONOOXY__45__THREONINE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C4H10NO7P/c5-3(4(7)8)2(6)1-12-13(9,10)11/h2-3,6H,1,5H2,(H,7,8)(H2,9,10,11)/p-2/t2-,3+/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_3OH__45__4P__45__OH__45__ALPHA__45__KETOBUTYRATE_c" id="M_3OH__45__4P__45__OH__45__ALPHA__45__KETOBUTYRATE_c" name="(3R)-3-hydroxy-2-oxo-4 phosphonooxybutanoate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C4H4O8P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 211.0452</p>
            <p>smiles: O[C@H](COP([O-])([O-])=O)C(=O)C([O-])=O</p>
            <p>inchikey: MZJFVXDTNBHTKZ-UWTATZPHSA-K</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_3OH__45__4P__45__OH__45__ALPHA__45__KETOBUTYRATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C4H7O8P/c5-2(3(6)4(7)8)1-12-13(9,10)11/h2,5H,1H2,(H,7,8)(H2,9,10,11)/p-3/t2-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_INOSITOL__45__1__45__4__45__5__45__TRISPHOSPHATE_c" id="M_INOSITOL__45__1__45__4__45__5__45__TRISPHOSPHATE_c" name="D-myo-inositol (1,4,5)-trisphosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C6H9O15P3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 414.0512</p>
            <p>smiles: O[C@@H]1[C@H](O)[C@@H](OP([O-])([O-])=O)[C@H](OP([O-])([O-])=O)[C@@H](O)[C@@H]1OP([O-])([O-])=O</p>
            <p>inchikey: MMWCIQZXVOZEGG-XJTPDSDZSA-H</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_INOSITOL__45__1__45__4__45__5__45__TRISPHOSPHATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C6H15O15P3/c7-1-2(8)5(20-23(13,14)15)6(21-24(16,17)18)3(9)4(1)19-22(10,11)12/h1-9H,(H2,10,11,12)(H2,13,14,15)(H2,16,17,18)/p-6/t1-,2+,3+,4-,5-,6-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_D__45__MYO__45__INOSITOL__45__4__45__PHOSPHATE_c" id="M_D__45__MYO__45__INOSITOL__45__4__45__PHOSPHATE_c" name="1D-myo-inositol 4-monophosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 258.121</p>
            <p>smiles: O[C@@H]1[C@H](O)[C@H](O)[C@@H](OP([O-])([O-])=O)[C@H](O)[C@H]1O</p>
            <p>inchikey: INAPMGSXUVUWAF-CNWJWELYSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_D__45__MYO__45__INOSITOL__45__4__45__PHOSPHATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__497_c" id="M_CPD__45__497_c" name="pseudouridine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H12N2O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 244.2014</p>
            <p>smiles: OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)c1c[nH]c(=O)[nH]c1=O</p>
            <p>inchikey: PTJWIQPHWPFNBW-GBNDHIKLSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__497_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C9H12N2O6/c12-2-4-5(13)6(14)7(17-4)3-1-10-9(16)11-8(3)15/h1,4-7,12-14H,2H2,(H2,10,11,15,16)/t4-,5-,6-,7+/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_PHOSPHATIDYL__45__MYO__45__INOSITOL__45__45__45__BISPHOSPHA_c" id="M_PHOSPHATIDYL__45__MYO__45__INOSITOL__45__45__45__BISPHOSPHA_c" name="a 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C11H14O19P3R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [H][C@@](COC([*])=O)(COP([O-])(=O)O[C@@H]1[C@H](O)[C@H](O)[C@@H](OP([O-])([O-])=O)[C@H](OP([O-])([O-])=O)[C@H]1O)OC([*])=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_PHOSPHATIDYLINOSITOL__45__345__45__TRIPHOSPHATE_c" id="M_PHOSPHATIDYLINOSITOL__45__345__45__TRIPHOSPHATE_c" name="1-phosphatidyl-1D-myo-inositol 3,4,5-trisphosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-7" fbc:chemicalFormula="C11H13O22P4R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [H][C@@](COC([*])=O)(COP([O-])(=O)O[C@@H]1[C@H](O)[C@H](OP([O-])([O-])=O)[C@@H](OP([O-])([O-])=O)[C@H](OP([O-])([O-])=O)[C@H]1O)OC([*])=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_L__45__GLUTAMATE__45__5__45__P_c" id="M_L__45__GLUTAMATE__45__5__45__P_c" name="&amp;gamma;-L-glutamyl 5-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H8NO7P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 225.0944</p>
            <p>smiles: [NH3+][C@@H](CCC(=O)OP([O-])([O-])=O)C([O-])=O</p>
            <p>inchikey: PJRXVIJAERNUIP-VKHMYHEASA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_L__45__GLUTAMATE__45__5__45__P_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C5H10NO7P/c6-3(5(8)9)1-2-4(7)13-14(10,11)12/h3H,1-2,6H2,(H,8,9)(H2,10,11,12)/p-2/t3-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_GLT__45__tRNAs_c" id="M_GLT__45__tRNAs_c" name="a tRNAglu" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Charged__45__GLT__45__tRNAs_c" id="M_Charged__45__GLT__45__tRNAs_c" name="an L-glutamyl-[tRNAGlu]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__10277_c" id="M_CPD__45__10277_c" name="lotaustralin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H19NO6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 261.2717</p>
            <p>smiles: CC[C@@](C)(O[C@@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1O)C#N</p>
            <p>inchikey: WEWBWVMTOYUPHH-QHAQEBJBSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__10277_c">
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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        </annotation>
      </species>
      <species metaid="M_CPD__45__12699_c" id="M_CPD__45__12699_c" name="(2R)-2-hydroxy-2-methylbutanenitrile" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 99.1311</p>
            <p>smiles: CC[C@@](C)(O)C#N</p>
            <p>inchikey: VMEHOTODTPXCKT-RXMQYKEDSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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                <rdf:Bag>
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                </rdf:Bag>
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        </annotation>
      </species>
      <species metaid="M_S__45__2__45__Hydroxyacids1_c" id="M_S__45__2__45__Hydroxyacids1_c" name="an (S)-2-hydroxyacid" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H2O3R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: O[C@@H]([*])C([O-])=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_CPD__45__7630_c" id="M_CPD__45__7630_c" name="(-)-epicatechin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H14O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 290.2681</p>
            <p>smiles: [H][C@@]1(Oc2cc(O)cc(O)c2C[C@H]1O)c1ccc(O)c(O)c1</p>
            <p>inchikey: PFTAWBLQPZVEMU-UKRRQHHQSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__7630_c">
              <bqbiol:isVersionOf>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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        </annotation>
      </species>
      <species metaid="M_Sulfurylated__45__ThiI_c" id="M_Sulfurylated__45__ThiI_c" name="an S-sulfanyl-[ThiI sulfur-carrier protein]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Sulfur__45__Carrier__45__Proteins__45__ThiI_c" id="M_Sulfur__45__Carrier__45__Proteins__45__ThiI_c" name="a ThiI sulfur-carrier protein" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__4125_c" id="M_CPD__45__4125_c" name="avenasterol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H48O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 412.6908</p>
            <p>smiles: [H]\C(C)=C(/CC[C@@]([H])(C)C1([H])CCC2([H])C3=CC[C@@]4([H])C[C@@]([H])(O)CC[C@]4(C)C3([H])CC[C@]12C)C(C)C</p>
            <p>inchikey: MCWVPSBQQXUCTB-PNOHOJSCSA-N</p>
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        </notes>
        <annotation>
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              <bqbiol:isVersionOf>
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                </rdf:Bag>
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        </annotation>
      </species>
      <species metaid="M_CPD__45__4126_c" id="M_CPD__45__4126_c" name="5-dehydroavenasterol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H46O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 410.6749</p>
            <p>smiles: C\C=C(\CC[C@@H](C)C1CCC2C3=CC=C4C[C@@H](O)CC[C@]4(C)C3CC[C@]12C)C(C)C</p>
            <p>inchikey: XPRWWANUPMYKMF-UUHDPGOWSA-N</p>
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        <notes>
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      <species metaid="M_CPD__45__4127_c" id="M_CPD__45__4127_c" name="isofucosterol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H48O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 412.6908</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 400.6801</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 416.6795</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 258.121</p>
            <p>smiles: O[C@H]1[C@H](O)[C@H](O)[C@H](OP([O-])([O-])=O)[C@@H](O)[C@@H]1O</p>
            <p>inchikey: INAPMGSXUVUWAF-PTQMNWPWSA-L</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 258.121</p>
            <p>smiles: OC1O[C@H](COP([O-])([O-])=O)[C@@H](O)[C@H](O)[C@H]1O</p>
            <p>inchikey: NBSCHQHZLSJFNQ-GASJEMHNSA-L</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 414.6636</p>
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            <p>inchikey: FMFAICDKESPFNH-NQMBQAPESA-N</p>
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      <species metaid="M_p__45__his__45__tRNAS_c" id="M_p__45__his__45__tRNAS_c" name="p-tRNAHis" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      <species metaid="M_App__45__his__45__tRNAs_c" id="M_App__45__his__45__tRNAs_c" name="App-tRNAHis" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__10284_c" id="M_CPD__45__10284_c" name="3-oxo-myristoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O18P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 987.844</p>
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      <species metaid="M_CPD0__45__2171_c" id="M_CPD0__45__2171_c" name="(S)-3-hydroxytetradecanoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H58N7O18P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 989.86</p>
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      <species metaid="M_cis__45__5__45__enoyl__45__CoA_c" id="M_cis__45__5__45__enoyl__45__CoA_c" name="a cis-5-enoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      <species metaid="M_trans__45__2__45__cis__45__5__45__dienoyl__45__CoA_c" id="M_trans__45__2__45__cis__45__5__45__dienoyl__45__CoA_c" name="a trans2,cis-5-dienoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      <species metaid="M_ASP__45__tRNAs_c" id="M_ASP__45__tRNAs_c" name="tRNAasp" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      <species metaid="M_Charged__45__ASP__45__tRNAs_c" id="M_Charged__45__ASP__45__tRNAs_c" name="L-aspartyl-tRNAasp" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      <species metaid="M_L__45__ASPARTATE__45__SEMIALDEHYDE_c" id="M_L__45__ASPARTATE__45__SEMIALDEHYDE_c" name="L-aspartate-semialdehyde" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7NO3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 117.1033</p>
            <p>smiles: [H]C(=O)C[C@H]([NH3+])C([O-])=O</p>
            <p>inchikey: HOSWPDPVFBCLSY-VKHMYHEASA-N</p>
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      <species metaid="M_ADENINE_c" id="M_ADENINE_c" name="adenine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H5N5">
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            <p>mass: 135.1267</p>
            <p>smiles: Nc1ncnc2[nH]cnc12</p>
            <p>inchikey: GFFGJBXGBJISGV-UHFFFAOYSA-N</p>
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        </annotation>
      </species>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 151.1261</p>
            <p>smiles: Nc1nc(=O)[nH]c2nc[nH]c12</p>
            <p>inchikey: DRAVOWXCEBXPTN-UHFFFAOYSA-N</p>
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        </notes>
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      <species metaid="M_PHE_c" id="M_PHE_c" name="L-phenylalanine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H11NO2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 165.1891</p>
            <p>smiles: [NH3+][C@@H](Cc1ccccc1)C([O-])=O</p>
            <p>inchikey: COLNVLDHVKWLRT-QMMMGPOBSA-N</p>
          </body>
        </notes>
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            <rdf:Description rdf:about="#M_PHE_c">
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      <species metaid="M_PHENYL__45__PYRUVATE_c" id="M_PHENYL__45__PYRUVATE_c" name="2-oxo-3-phenylpropanoate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H7O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 163.1506</p>
            <p>smiles: [O-]C(=O)C(=O)Cc1ccccc1</p>
            <p>inchikey: BTNMPGBKDVTSJY-UHFFFAOYSA-M</p>
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            <rdf:Description rdf:about="#M_PHENYL__45__PYRUVATE_c">
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 529.4896</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 587.3269</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 383.3484</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      <species metaid="M_Red__45__Glutaredoxins_c" id="M_Red__45__Glutaredoxins_c" name="a reduced glutaredoxin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 124.9362</p>
            <p>smiles: O[As](O)[O-]</p>
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          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [O-]P1(=O)OC[C@H]2OC(*)[C@H]([*])[C@@H]2O1</p>
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            <p>mass: 139.9282</p>
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            <p>mass: 2208.9123</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 180.1559</p>
            <p>smiles: OC[C@H]1OC(O)[C@@H](O)[C@@H](O)[C@@H]1O</p>
            <p>inchikey: WQZGKKKJIJFFOK-QTVWNMPRSA-N</p>
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      <species metaid="M_ALGINATE_c" id="M_ALGINATE_c" name="alginate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      </species>
      <species metaid="M_Poly__45__beta__45__D__45__Mannuronate_c" id="M_Poly__45__beta__45__D__45__Mannuronate_c" name="mannuronan" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 194</p>
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      </species>
      <species metaid="M_Mannosyl9__45__Nacetylglucosaminyl2_c" id="M_Mannosyl9__45__Nacetylglucosaminyl2_c" name="a (mannosyl)9-(N-acetylglucosaminyl)2" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C70H118N2O56">
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            <p>mass: 1883.6657</p>
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        </notes>
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        <notes>
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            <p>mass: 1721.5251</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 180.1559</p>
            <p>smiles: OC[C@H]1O[C@H](O)[C@@H](O)[C@@H](O)[C@@H]1O</p>
            <p>inchikey: WQZGKKKJIJFFOK-PQMKYFCFSA-N</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      <species metaid="M_4__45__TRIMETHYLAMMONIOBUTANAL_c" id="M_4__45__TRIMETHYLAMMONIOBUTANAL_c" name="4-trimethylammoniobutanal" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C7H16NO">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 130.2075</p>
            <p>smiles: [H]C(=O)CCC[N+](C)(C)C</p>
            <p>inchikey: OITBLCDWXSXNCN-UHFFFAOYSA-N</p>
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      <species metaid="M_3__45__HYDROXY__45__N6N6N6__45__TRIMETHYL__45__L__45__LYSINE_c" id="M_3__45__HYDROXY__45__N6N6N6__45__TRIMETHYL__45__L__45__LYSINE_c" name="3-hydroxy-N6,N6,N6-trimethyl-L-lysine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C9H21N2O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 205.2741</p>
            <p>smiles: C[N+](C)(C)CCCC(O)[C@H]([NH3+])C([O-])=O</p>
            <p>inchikey: ZRJHLGYVUCPZNH-MQWKRIRWSA-O</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 337.1811</p>
            <p>smiles: Nc1c([nH+]cn1[C@@H]1O[C@H](COP([O-])([O-])=O)[C@@H](O)[C@H]1O)C([O-])=O</p>
            <p>inchikey: XFVULMDJZXYMSG-ZIYNGMLESA-L</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 571.2685</p>
            <p>smiles: CC(C)=CCNc1ncnc2n(cnc12)[C@@H]1O[C@H](COP([O-])(=O)OP([O-])(=O)OP([O-])([O-])=O)[C@@H](O)[C@H]1O</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 492.296</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 221.259</p>
            <p>smiles: C[C@@H](CO)CCNc1ncnc2nc[nH]c12</p>
            <p>inchikey: XXFACTAYGKKOQB-SSDOTTSWSA-N</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 383.3996</p>
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      <species metaid="M_CPD__45__4441_c" id="M_CPD__45__4441_c" name="cis-zeatin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O">
        <notes>
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            <p>mass: 219.2431</p>
            <p>smiles: C\C(CO)=C\CNc1ncnc2[nH]cnc12</p>
            <p>inchikey: UZKQTCBAMSWPJD-UQCOIBPSSA-N</p>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__4618_c" id="M_CPD__45__4618_c" name="cis-zeatin-7-N-glucoside" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H23N5O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 381.3837</p>
            <p>smiles: [H]\C(CNc1ncnc2ncn(c12)[C@@]1([H])O[C@]([H])(CO)[C@@]([H])(O)[C@]([H])(O)[C@@]1([H])O)=C(\C)CO</p>
            <p>inchikey: HTDHRCLVWUEXIS-GIHYWFGSSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__4618_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_L__45__ALPHA__45__AMINO__45__EPSILON__45__KETO__45__PIMELATE_c" id="M_L__45__ALPHA__45__AMINO__45__EPSILON__45__KETO__45__PIMELATE_c" name="L-&amp;alpha;-amino-&amp;epsilon;-keto-pimelate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H10NO5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 188.1585</p>
            <p>smiles: [NH3+][C@@H](CCCC(=O)C([O-])=O)C([O-])=O</p>
            <p>inchikey: UKCSFKLWNHUBDY-BYPYZUCNSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_L__45__ALPHA__45__AMINO__45__EPSILON__45__KETO__45__PIMELATE_c">
              <bqbiol:isVersionOf>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__14808_c" id="M_CPD__45__14808_c" name="scyllo-inosose" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 178.14</p>
            <p>smiles: O[C@H]1[C@H](O)[C@@H](O)C(=O)[C@@H](O)[C@@H]1O</p>
            <p>inchikey: VYEGBDHSGHXOGT-HYFGLKJPSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__14808_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C6H10O6/c7-1-2(8)4(10)6(12)5(11)3(1)9/h1-5,7-11H/t1-,2-,3+,4+,5-"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_D__45__Glucopyranuronate_c" id="M_D__45__Glucopyranuronate_c" name="D-glucopyranuronate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 193.132</p>
            <p>smiles: OC1O[C@@H]([C@@H](O)[C@H](O)[C@H]1O)C([O-])=O</p>
            <p>inchikey: AEMOLEFTQBMNLQ-AQKNRBDQSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_D__45__Glucopyranuronate_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C6H10O7/c7-1-2(8)4(5(10)11)13-6(12)3(1)9/h1-4,6-9,12H,(H,10,11)/p-1/t1-,2-,3+,4-,6?/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
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          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__7671_c" id="M_CPD__45__7671_c" name="methanethiol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH4S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 48.107</p>
            <p>smiles: CS</p>
            <p>inchikey: LSDPWZHWYPCBBB-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__7671_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/CH4S/c1-2/h2H,1H3"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_ETHYLENE__45__CMPD_c" id="M_ETHYLENE__45__CMPD_c" name="ethene" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 28.0532</p>
            <p>smiles: C=C</p>
            <p>inchikey: VGGSQFUCUMXWEO-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_ETHYLENE__45__CMPD_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C2H4/c1-2/h1-2H2"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_FE__43__3_c" id="M_FE__43__3_c" name="Fe3+" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="Fe">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 55.843</p>
            <p>smiles: [Fe+3]</p>
            <p>inchikey: VTLYFUHAOXGGBS-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_FE__43__3_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/Fe/q+3"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
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      <species metaid="M_OH_c" id="M_OH_c" name="OH-" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 18.0153</p>
            <p>smiles: [H]O[H]</p>
            <p>inchikey: XLYOFNOQVPJJNP-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_OH_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/H2O/h1H2"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CHITIN_c" id="M_CHITIN_c" name="chitin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__13534_c" id="M_CPD__45__13534_c" name="&amp;beta;-ketovaleryl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C26H38N7O18P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 861.605</p>
            <p>smiles: CCC(=O)CC(=O)SCC[NH+]=C([O-])CC[NH+]=C([O-])C(O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OCC1OC(C(O)C1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: WIOQNWTZBOQTEU-UHFFFAOYSA-J</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__13534_c">
              <bqbiol:isVersionOf>
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                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C26H42N7O18P3S/c1-4-14(34)9-17(36)55-8-7-28-16(35)5-6-29-24(39)21(38)26(2,3)11-48-54(45,46)51-53(43,44)47-10-15-20(50-52(40,41)42)19(37)25(49-15)33-13-32-18-22(27)30-12-31-23(18)33/h12-13,15,19-21,25,37-38H,4-11H2,1-3H3,(H,28,35)(H,29,39)(H,43,44)(H,45,46)(H2,27,30,31)(H2,40,41,42)/p-4"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
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          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_BUTYRYL__45__COA_c" id="M_BUTYRYL__45__COA_c" name="butanoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C25H38N7O17P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 833.594</p>
            <p>smiles: CCCC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: CRFNGMNYKDXRTN-CITAKDKDSA-J</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_BUTYRYL__45__COA_c">
              <bqbiol:isVersionOf>
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        </annotation>
      </species>
      <species metaid="M_CPD0__45__2121_c" id="M_CPD0__45__2121_c" name="trans-hex-2-enoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C27H40N7O17P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 859.632</p>
            <p>smiles: CCC\C=C\C(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: OINXHIBNZUUIMR-IXUYQXAASA-J</p>
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        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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      <species metaid="M_CPD__45__16483_c" id="M_CPD__45__16483_c" name="&amp;alpha;-N-acetylneuraminyl-2,6-&amp;beta;-D-galactosyl-(1&amp;rarr;4)-N-acetyl-&amp;beta;-D-glucosaminyl-R" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H40N2O19R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [H][C@]1(O[C@](C[C@H](O)[C@H]1NC(C)=O)(OC[C@H]1O[C@@H](O[C@H]2[C@H](O)[C@@H](NC(C)=O)[C@H](O[*])O[C@@H]2CO)[C@H](O)[C@@H](O)[C@H]1O)C([O-])=O)[C@H](O)[C@H](O)CO</p>
          </body>
        </notes>
      </species>
      <species metaid="M_CMP__45__N__45__ACETYL__45__NEURAMINATE_c" id="M_CMP__45__N__45__ACETYL__45__NEURAMINATE_c" name="CMP-N-acetyl-&amp;beta;-neuraminate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H29N4O16P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 612.4363</p>
            <p>smiles: [H][C@]1(O[C@](C[C@H](O)[C@H]1NC(C)=O)(OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n1ccc(N)nc1=O)C([O-])=O)[C@H](O)[C@H](O)CO</p>
            <p>inchikey: TXCIAUNLDRJGJZ-BILDWYJOSA-L</p>
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        </notes>
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        </annotation>
      </species>
      <species metaid="M_L__45__BETA__45__ASPARTYL__45__P_c" id="M_L__45__BETA__45__ASPARTYL__45__P_c" name="L-aspartyl-4-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H6NO7P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 211.0678</p>
            <p>smiles: [NH3+][C@@H](CC(=O)OP([O-])([O-])=O)C([O-])=O</p>
            <p>inchikey: IXZNKTPIYKDIGG-REOHCLBHSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_L__45__BETA__45__ASPARTYL__45__P_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C4H8NO7P/c5-2(4(7)8)1-3(6)12-13(9,10)11/h2H,1,5H2,(H,7,8)(H2,9,10,11)/p-2/t2-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_i__45__Antigens_c" id="M_i__45__Antigens_c" name="i antigen" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H70N3O31R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CC(=O)N[C@@H]1[C@@H](O)[C@H](O[C@@H]2O[C@H](CO[C@@H]3O[C@H](CO)[C@@H](O[C@@H]4O[C@H](CO)[C@H](O)[C@H](O)[C@H]4O)[C@H](O)[C@H]3NC(C)=O)[C@H](O)[C@H](O[C@@H]3O[C@H](CO)[C@@H](O[C@@H]4O[C@H](CO)[C@H](O)[C@H](O)[C@H]4O)[C@H](O)[C@H]3NC(C)=O)[C@H]2O)[C@@H](CO)O[C@H]1O[*]</p>
          </body>
        </notes>
      </species>
      <species metaid="M_DIHYDROXYACETONE_c" id="M_DIHYDROXYACETONE_c" name="dihydroxyacetone" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 90.0779</p>
            <p>smiles: OCC(=O)CO</p>
            <p>inchikey: RXKJFZQQPQGTFL-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_DIHYDROXYACETONE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C3H6O3/c4-1-3(6)2-5/h4-5H,1-2H2"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__16494_c" id="M_CPD__45__16494_c" name="N-acetyl-&amp;beta;-D-galactosyl-(1,4)-[N-acetyl-&amp;beta;-D-glucosyl-(1,6)]-N-acetyl-&amp;beta;-D-glucosaminyl-(1,3)-&amp;beta;-D-galactosyl-(1,4)-N-acetyl-&amp;beta;-D-glucosaminyl-R" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C36H60N3O26R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CC(=O)N[C@@H]1[C@@H](O)[C@H](O)[C@@H](CO)O[C@H]1OC[C@H]1O[C@@H](O[C@H]2[C@H](O)[C@@H](NC(C)=O)[C@H](O[*])O[C@@H]2CO)[C@H](O)[C@@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO)[C@H](O)[C@H](O)[C@H]3O)[C@H](O)[C@H]2NC(C)=O)[C@H]1O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_I__45__antigens_c" id="M_I__45__antigens_c" name="I antigen" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C42H70N3O31R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CC(=O)N[C@@H]1[C@@H](O)[C@H](O[C@@H]2O[C@H](CO[C@@H]3O[C@H](CO)[C@@H](O[C@@H]4O[C@H](CO)[C@H](O)[C@H](O)[C@H]4O)[C@H](O)[C@H]3NC(C)=O)[C@H](O)[C@H](O[C@@H]3O[C@H](CO)[C@@H](O[C@@H]4O[C@H](CO)[C@H](O)[C@H](O)[C@H]4O)[C@H](O)[C@H]3NC(C)=O)[C@H]2O)[C@@H](CO)O[C@H]1O[*]</p>
          </body>
        </notes>
      </species>
      <species metaid="M_a__45__radical__45__of__45__luteolin__45__7__45__iOi__45__diglucuronid_c" id="M_a__45__radical__45__of__45__luteolin__45__7__45__iOi__45__diglucuronid_c" name="a radical of luteolin-7-O-diglucuronide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C27H22O18">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 634.4544</p>
            <p>smiles: [O]c1ccc(cc1[O-])-c1cc(=O)c2c(O)cc(OC3O[C@@H]([C@@H](O)[C@H](O)[C@H]3O[C@@H]3O[C@@H]([C@@H](O)[C@H](O)[C@H]3O)C([O-])=O)C([O-])=O)cc2o1</p>
            <p>inchikey: GBZWMUPVORAWBY-HBUFFLJYSA-K</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_a__45__radical__45__of__45__luteolin__45__7__45__iOi__45__diglucuronid_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C27H25O18/c28-9-2-1-7(3-10(9)29)13-6-12(31)15-11(30)4-8(5-14(15)42-13)41-27-23(19(35)18(34)22(44-27)25(39)40)45-26-20(36)16(32)17(33)21(43-26)24(37)38/h1-6,16-23,26-27,29-30,32-36H,(H,37,38)(H,39,40)/p-3/t16-,17-,18-,19-,20+,21-,22-,23+,26-,27?/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Charged__45__GLY__45__tRNAs_c" id="M_Charged__45__GLY__45__tRNAs_c" name="a glycyl-[tRNAgly]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_GLY__45__tRNAs_c" id="M_GLY__45__tRNAs_c" name="a tRNAgly" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CARBAMYUL__45__L__45__ASPARTATE_c" id="M_CARBAMYUL__45__L__45__ASPARTATE_c" name="N-carbamoyl-L-aspartate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H6N2O5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 174.1126</p>
            <p>smiles: NC(=O)N[C@@H](CC([O-])=O)C([O-])=O</p>
            <p>inchikey: HLKXYZVTANABHZ-REOHCLBHSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CARBAMYUL__45__L__45__ASPARTATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C5H8N2O5/c6-5(12)7-2(4(10)11)1-3(8)9/h2H,1H2,(H,8,9)(H,10,11)(H3,6,7,12)/p-2/t2-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_P__45__RIBOSYL__45__4__45__SUCCCARB__45__AMINOIMIDAZOLE_c" id="M_P__45__RIBOSYL__45__4__45__SUCCCARB__45__AMINOIMIDAZOLE_c" name="5&apos;-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C13H15N4O12P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 450.2538</p>
            <p>smiles: [H][C@]1(COP([O-])([O-])=O)O[C@]([H])([C@H](O)[C@@H]1O)n1cnc(C(=O)N[C@@H](CC([O-])=O)C([O-])=O)c1N</p>
            <p>inchikey: NAQGHJTUZRHGAC-ZZZDFHIKSA-J</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_P__45__RIBOSYL__45__4__45__SUCCCARB__45__AMINOIMIDAZOLE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C13H19N4O12P/c14-10-7(11(22)16-4(13(23)24)1-6(18)19)15-3-17(10)12-9(21)8(20)5(29-12)2-28-30(25,26)27/h3-5,8-9,12,20-21H,1-2,14H2,(H,16,22)(H,18,19)(H,23,24)(H2,25,26,27)/p-4/t4-,5+,8+,9+,12+/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Non__45__Glucosylated__45__Glucose__45__Acceptors_c" id="M_Non__45__Glucosylated__45__Glucose__45__Acceptors_c" name="a non glucosylated D-glucose acceptor" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Beta__45__D__45__glucosides_c" id="M_Beta__45__D__45__glucosides_c" name="a &amp;beta;-D glucoside" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Non__45__Galactosylated__45__Galactose__45__Acceptors_c" id="M_Non__45__Galactosylated__45__Galactose__45__Acceptors_c" name="a non galactosylated galactose acceptor" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Beta__45__D__45__Galactosides_c" id="M_Beta__45__D__45__Galactosides_c" name="a &amp;beta;-D-galactoside" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O6R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: OC[C@H]1O[C@@H](O[*])[C@H](O)[C@@H](O)[C@H]1O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_Non__45__Glycosylated__45__sugar__45__Acceptors_c" id="M_Non__45__Glycosylated__45__sugar__45__Acceptors_c" name="a non glycosylated sugar acceptor" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="HOR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: O[*]</p>
          </body>
        </notes>
      </species>
      <species metaid="M_Alpha__45__D__45__Mannosides_c" id="M_Alpha__45__D__45__Mannosides_c" name="an &amp;alpha;-D-mannoside" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Beta__45__D__45__Mannosides_c" id="M_Beta__45__D__45__Mannosides_c" name="a &amp;beta;-D-mannoside" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__12601_c" id="M_CPD__45__12601_c" name="&amp;beta;-D-mannopyranose" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 180.1559</p>
            <p>smiles: OC[C@H]1O[C@@H](O)[C@@H](O)[C@@H](O)[C@@H]1O</p>
            <p>inchikey: WQZGKKKJIJFFOK-RWOPYEJCSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__12601_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3-,4+,5+,6-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_tRNAs__45__with__45__queuine_c" id="M_tRNAs__45__with__45__queuine_c" name="a queuosine34 in tRNA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C17H22N5O13P2R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: Nc1nc2n(cc(C[NH2+]C3C=C[C@H](O)[C@@H]3O)c2c(=O)[nH]1)[C@@H]1O[C@H](COP([O-])(=O)O*)[C@@H](OP([O-])(=O)O*)[C@H]1O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_QUEUINE_c" id="M_QUEUINE_c" name="queuine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C12H16N5O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 278.2866</p>
            <p>smiles: Nc1nc2[nH]cc(C[NH2+][C@H]3C=C[C@H](O)[C@@H]3O)c2c(=O)[nH]1</p>
            <p>inchikey: WYROLENTHWJFLR-ACLDMZEESA-O</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_QUEUINE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C12H15N5O3/c13-12-16-10-8(11(20)17-12)5(4-15-10)3-14-6-1-2-7(18)9(6)19/h1-2,4,6-7,9,14,18-19H,3H2,(H4,13,15,16,17,20)/p+1/t6-,7-,9+/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__520_c" id="M_CPD__45__520_c" name="quercetin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H9O7">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 301.2283</p>
            <p>smiles: Oc1ccc(cc1O)-c1oc2cc([O-])cc(O)c2c(=O)c1O</p>
            <p>inchikey: REFJWTPEDVJJIY-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__520_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C15H10O7/c16-7-4-10(19)12-11(5-7)22-15(14(21)13(12)20)6-1-2-8(17)9(18)3-6/h1-5,16-19,21H/p-1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_DIVINYL__45__PROTOCHLOROPHYLLIDE__45__A_c" id="M_DIVINYL__45__PROTOCHLOROPHYLLIDE__45__A_c" name="3,8-divinyl protochlorophyllide a" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C35H28MgN4O5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 608.927</p>
            <p>smiles: COC(=O)[C-]1C(=O)c2c(C)c3C=C4C(C=C)=C(C)C5=[N+]4[Mg--]46n3c2C1=C1C(CCC([O-])=O)=C(C)C(C=c2c(C)c(C=C)c(=C5)n42)=[N+]61</p>
            <p>inchikey: JUNIUPXPPBQKSQ-UAVVDGTISA-K</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_DIVINYL__45__PROTOCHLOROPHYLLIDE__45__A_c">
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      <species metaid="M_DIVINYLCHLOROPHYLLIDE__45__A_c" id="M_DIVINYLCHLOROPHYLLIDE__45__A_c" name="3,8-divinyl chlorophyllide a" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C35H30MgN4O5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 610.943</p>
            <p>smiles: COC(=O)[C-]1C(=O)c2c(C)c3C=C4C(C=C)=C(C)C5=[N+]4[Mg--]46n3c2C1=C1[C@@H](CCC([O-])=O)[C@H](C)C(C=c2c(C)c(C=C)c(=C5)n42)=[N+]61</p>
            <p>inchikey: UNSKJTNUDHVNJT-PVMVIUQGSA-K</p>
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        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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      <species metaid="M_LYS__45__tRNAs_c" id="M_LYS__45__tRNAs_c" name="a tRNAlys" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Charged__45__LYS__45__tRNAs_c" id="M_Charged__45__LYS__45__tRNAs_c" name="an L-lysyl-[tRNAlys]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__19163_c" id="M_CPD__45__19163_c" name="(2E,11Z)-octadecenoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H62N7O17P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1025.935</p>
            <p>smiles: CCCCCC\C=C/CCCCCCC\C=C\C(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: OPMPWWFMNYWBGF-PKYBCSRXSA-J</p>
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        </notes>
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      <species metaid="M_2__45__Lysophosphatidylcholines_c" id="M_2__45__Lysophosphatidylcholines_c" name="a 1-acyl-sn-glycero-3-phosphocholine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H19NO7PR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: C[N+](C)(C)CCOP([O-])(=O)OC[C@H](O)COC([*])=O</p>
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        </notes>
      </species>
      <species metaid="M_L__45__1__45__GLYCERO__45__PHOSPHORYLCHOLINE_c" id="M_L__45__1__45__GLYCERO__45__PHOSPHORYLCHOLINE_c" name="sn-glycero-3-phosphocholine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H20NO6P">
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          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 257.2213</p>
            <p>smiles: C[N+](C)(C)CCOP([O-])(=O)OC[C@H](O)CO</p>
            <p>inchikey: SUHOQUVVVLNYQR-MRVPVSSYSA-N</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1043.95</p>
            <p>smiles: CCCCCC\C=C/CCCCCCC[C@H](O)CC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: SCDXBWNPJAGEEK-KBOAXVDLSA-J</p>
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        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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      <species metaid="M_CPD__45__19160_c" id="M_CPD__45__19160_c" name="3-oxo-(11Z)-octadecenoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H62N7O18P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1041.934</p>
            <p>smiles: CCCCCC\C=C/CCCCCCCC(=O)CC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: OUROWZUTGFHRJE-SAIINBSPSA-J</p>
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        <annotation>
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      <species metaid="M_CPD__45__19162_c" id="M_CPD__45__19162_c" name="(2E,9Z)-hexadecenoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H58N7O17P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 997.882</p>
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            <p>inchikey: BEQWCBBSKHMRCA-HENMZMGOSA-J</p>
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        <annotation>
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      <species metaid="M_CPD__45__19155_c" id="M_CPD__45__19155_c" name="(S)-3-hydroxy-(9Z)-hexadecenoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H60N7O18P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1015.897</p>
            <p>smiles: CCCCCC\C=C/CCCCC[C@H](O)CC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: ZIRSQPAPHGZDIL-VSCXGISKSA-J</p>
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        </notes>
        <annotation>
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      <species metaid="M_CPD__45__19158_c" id="M_CPD__45__19158_c" name="3-oxo-(9Z)-hexadecenoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H58N7O18P3S">
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          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1013.881</p>
            <p>smiles: CCCCCC\C=C/CCCCCC(=O)CC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: JDNARGYWMLYADA-MDMKAECGSA-J</p>
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        </notes>
        <annotation>
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      <species metaid="M_ALLANTOATE_c" id="M_ALLANTOATE_c" name="allantoate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H7N4O4">
        <notes>
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            <p>mass: 175.1233</p>
            <p>smiles: NC(=O)NC(NC(N)=O)C([O-])=O</p>
            <p>inchikey: NUCLJNSWZCHRKL-UHFFFAOYSA-M</p>
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        </notes>
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            <rdf:Description rdf:about="#M_ALLANTOATE_c">
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      <species metaid="M_L__45__Fucopyranoses_c" id="M_L__45__Fucopyranoses_c" name="L-fucopyranose" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 164.1565</p>
            <p>smiles: C[C@@H]1OC(O)[C@@H](O)[C@H](O)[C@@H]1O</p>
            <p>inchikey: SHZGCJCMOBCMKK-DHVFOXMCSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_L__45__Fucopyranoses_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C6H12O5/c1-2-3(7)4(8)5(9)6(10)11-2/h2-10H,1H3/t2-,3+,4+,5-,6?/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_AN__45__ALPHA__45__L__45__FUCOSIDE_c" id="M_AN__45__ALPHA__45__L__45__FUCOSIDE_c" name="&amp;alpha;-L-fucoside" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O5R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: C[C@@H]1O[C@@H](O[*])[C@@H](O)[C@H](O)[C@@H]1O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_MELIBIOSE_c" id="M_MELIBIOSE_c" name="melibiose" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H22O11">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 342.2965</p>
            <p>smiles: OC[C@H]1O[C@H](OC[C@H]2O[C@@H](O)[C@H](O)[C@@H](O)[C@@H]2O)[C@H](O)[C@@H](O)[C@H]1O</p>
            <p>inchikey: DLRVVLDZNNYCBX-ZZFZYMBESA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_MELIBIOSE_c">
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_AMINO__45__ACETONE_c" id="M_AMINO__45__ACETONE_c" name="aminoacetone" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C3H8NO">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 74.1012</p>
            <p>smiles: CC(=O)C[NH3+]</p>
            <p>inchikey: BCDGQXUMWHRQCB-UHFFFAOYSA-O</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_AMINO__45__ACETONE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C3H7NO/c1-3(5)2-4/h2,4H2,1H3/p+1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
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        </annotation>
      </species>
      <species metaid="M_PHOSPHORIBULOSYL__45__FORMIMINO__45__AICAR__45__P_c" id="M_PHOSPHORIBULOSYL__45__FORMIMINO__45__AICAR__45__P_c" name="phosphoribulosylformimino-AICAR-P" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C15H21N5O15P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 573.3015</p>
            <p>smiles: NC(=O)c1ncn([C@@H]2O[C@H](COP([O-])([O-])=O)[C@@H](O)[C@H]2O)c1NC=NCC(=O)[C@H](O)[C@H](O)COP([O-])([O-])=O</p>
            <p>inchikey: BLKFNHOCHNCLII-GHVQHMAVSA-J</p>
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        </notes>
        <annotation>
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        </annotation>
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      <species metaid="M_PHOSPHORIBOSYL__45__FORMIMINO__45__AICAR__45__P_c" id="M_PHOSPHORIBOSYL__45__FORMIMINO__45__AICAR__45__P_c" name="1-(5-phospho-&amp;beta;-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C15H21N5O15P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 573.3015</p>
            <p>smiles: NC(=O)c1ncn([C@@H]2O[C@H](COP([O-])([O-])=O)[C@@H](O)[C@H]2O)c1\N=C\N[C@@H]1O[C@H](COP([O-])([O-])=O)[C@@H](O)[C@H]1O</p>
            <p>inchikey: QOUSHGMTBIIAHR-KEOHHSTQSA-J</p>
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        </notes>
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          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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                </rdf:Bag>
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        </annotation>
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      <species metaid="M_Charged__45__PRO__45__tRNAs_c" id="M_Charged__45__PRO__45__tRNAs_c" name="an L-prolyl-[tRNApro]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_PRO__45__tRNAs_c" id="M_PRO__45__tRNAs_c" name="a tRNApro" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="RH">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_BIOMASS_c" id="M_BIOMASS_c" name="BIOMASS" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_GUANOSINE__45__5DP__45__3DP_c" id="M_GUANOSINE__45__5DP__45__3DP_c" name="ppGpp" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C10H12N5O17P4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 598.1234</p>
            <p>smiles: Nc1nc2n(cnc2c(=O)[nH]1)[C@@H]1O[C@H](COP([O-])(=O)OP(O)([O-])=O)[C@@H](OP([O-])(=O)OP([O-])([O-])=O)[C@H]1O</p>
            <p>inchikey: BUFLLCUFNHESEH-UUOKFMHZSA-I</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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      <species metaid="M_DGDP_c" id="M_DGDP_c" name="dGDP" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H12N5O10P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 424.1789</p>
            <p>smiles: Nc1nc2n(cnc2c(=O)[nH]1)[C@H]1C[C@H](O)[C@@H](COP([O-])(=O)OP([O-])([O-])=O)O1</p>
            <p>inchikey: CIKGWCTVFSRMJU-KVQBGUIXSA-K</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_DGDP_c">
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                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C10H15N5O10P2/c11-10-13-8-7(9(17)14-10)12-3-15(8)6-1-4(16)5(24-6)2-23-27(21,22)25-26(18,19)20/h3-6,16H,1-2H2,(H,21,22)(H2,18,19,20)(H3,11,13,14,17)/p-3/t4-,5+,6+/m0/s1"/>
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      </species>
      <species metaid="M_5__45__ALPHA__45__CHOLESTA__45__724__45__DIEN__45__3__45__BETA__45__OL_c" id="M_5__45__ALPHA__45__CHOLESTA__45__724__45__DIEN__45__3__45__BETA__45__OL_c" name="5&amp;alpha;-cholesta-7,24-dien-3&amp;beta;-ol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 384.6377</p>
            <p>smiles: [H][C@@]1(CC[C@@]2([H])C3=CC[C@@]4([H])C[C@@H](O)CC[C@]4(C)[C@@]3([H])CC[C@]12C)[C@H](C)CCC=C(C)C</p>
            <p>inchikey: PKEPPDGGTSZLBL-SKCNUYALSA-N</p>
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        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_5__45__ALPHA__45__CHOLESTA__45__724__45__DIEN__45__3__45__BETA__45__OL_c">
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      <species metaid="M_CPD__45__8646_c" id="M_CPD__45__8646_c" name="7-dehydrodesmosterol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H42O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 382.6218</p>
            <p>smiles: [H][C@@]1(CC[C@@]2([H])C3=CC=C4C[C@@H](O)CC[C@]4(C)[C@@]3([H])CC[C@]12C)[C@H](C)CCC=C(C)C</p>
            <p>inchikey: RUSSPKPUXDSHNC-DDPQNLDTSA-N</p>
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      <species metaid="M_CPD__45__12902_c" id="M_CPD__45__12902_c" name="5-methylhex-4-enoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C28H42N7O17P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 873.658</p>
            <p>smiles: CC(C)=CCCC(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: BEYYLHUMFMWPLH-AXEMQUGESA-J</p>
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        </notes>
        <annotation>
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      </species>
      <species metaid="M_CPD__45__12897_c" id="M_CPD__45__12897_c" name="7-methyl-3-oxooct-6-enoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C30H44N7O18P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 915.695</p>
            <p>smiles: CC(C)=CCCC(=O)CC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: LPMIXVANMSEERY-FUEUKBNZSA-J</p>
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        </notes>
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          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__12905_c" id="M_CPD__45__12905_c" name="3-hydroxy-5-methylhex-4-enoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C28H42N7O18P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 889.658</p>
            <p>smiles: CC(C)=CC(O)CC(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: OLZYNLSKRKFUJC-GPZVIVARSA-J</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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        </annotation>
      </species>
      <species metaid="M_CPD__45__12904_c" id="M_CPD__45__12904_c" name="(2E)-5-methylhexa-2,4-dienoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C28H40N7O17P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 871.642</p>
            <p>smiles: CC(C)=C\C=C\C(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: IFMYVRQEHQTINS-DKIDORRISA-J</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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        </annotation>
      </species>
      <species metaid="M_CPD__45__12906_c" id="M_CPD__45__12906_c" name="5-methyl-3-oxo-4-hexenoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C28H40N7O18P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 887.642</p>
            <p>smiles: CC(C)=CC(=O)CC(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: ZFKZVSUJTDSJEY-AXEMQUGESA-J</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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        </annotation>
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      <species metaid="M_CPD__45__12935_c" id="M_CPD__45__12935_c" name="4&apos;-apo-&amp;beta;-carotenal" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C35H46O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 482.7391</p>
            <p>smiles: [H]C(=O)C(\C)=C\C=C\C(\C)=C\C=C\C(\C)=C\C=C\C=C(/C)\C=C\C=C(/C)\C=C\C1=C(C)CCCC1(C)C</p>
            <p>inchikey: FTQSFEZUHZHOAT-BRZOAGJPSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__12935_c">
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        </annotation>
      </species>
      <species metaid="M_CPD__45__7953_c" id="M_CPD__45__7953_c" name="torulene" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C40H54">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 534.8568</p>
            <p>smiles: CC(C)=C\C=C\C(\C)=C\C=C\C(\C)=C\C=C\C(\C)=C\C=C\C=C(/C)\C=C\C=C(/C)\C=C\C1=C(C)CCCC1(C)C</p>
            <p>inchikey: AIBOHNYYKWYQMM-MXBSLTGDSA-N</p>
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        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__7953_c">
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        </annotation>
      </species>
      <species metaid="M_CPD__45__4568_c" id="M_CPD__45__4568_c" name="14-hydroxylanosterol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H50O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 442.7168</p>
            <p>smiles: [H][C@@]1(CC[C@@]2(CO)C3=C(CC[C@]12C)[C@@]1(C)CC[C@H](O)C(C)(C)[C@]1([H])CC3)[C@H](C)CCC=C(C)C</p>
            <p>inchikey: DWVYYKFZEDMMPU-PUXRVUTHSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__4568_c">
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_LANOSTEROL_c" id="M_LANOSTEROL_c" name="lanosterol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H50O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 426.7174</p>
            <p>smiles: [H][C@@]1(CC[C@@]2(C)C3=C(CC[C@]12C)[C@@]1(C)CC[C@H](O)C(C)(C)[C@]1([H])CC3)[C@H](C)CCC=C(C)C</p>
            <p>inchikey: CAHGCLMLTWQZNJ-BQNIITSRSA-N</p>
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        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_LANOSTEROL_c">
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                <rdf:Bag>
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        </annotation>
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      <species metaid="M_CPD__45__4573_c" id="M_CPD__45__4573_c" name="14-oxolanosterol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H48O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 440.7009</p>
            <p>smiles: [H]C(C)(CCC=C(C)C)C1([H])CC[C@@]2(C=O)C3=C(CC[C@]12C)[C@@]1(C)CC[C@]([H])(O)C(C)(C)C1([H])CC3</p>
            <p>inchikey: PGGIMLIQOHYFIS-XQVXCQOBSA-N</p>
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        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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      <species metaid="M_44__45__DIMETHYL__45__CHOLESTA__45__812__45__24__45__TRIENOL_c" id="M_44__45__DIMETHYL__45__CHOLESTA__45__812__45__24__45__TRIENOL_c" name="4,4-dimethyl-cholesta-8,12,24-trienol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H46O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 410.6749</p>
            <p>smiles: [H][C@@]1(CC=C2C3=C(CC[C@]12C)[C@@]1(C)CC[C@H](O)C(C)(C)[C@]1([H])CC3)[C@H](C)CCC=C(C)C</p>
            <p>inchikey: LFQXEZVYNCBVDO-PBJLWWPKSA-N</p>
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        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_44__45__DIMETHYL__45__CHOLESTA__45__812__45__24__45__TRIENOL_c">
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                </rdf:Bag>
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        </annotation>
      </species>
      <species metaid="M_ACETAMIDE_c" id="M_ACETAMIDE_c" name="acetamide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H5NO">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 59.0672</p>
            <p>smiles: CC(N)=O</p>
            <p>inchikey: DLFVBJFMPXGRIB-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_ACETAMIDE_c">
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                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4)"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
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        </annotation>
      </species>
      <species metaid="M_CPD__45__15637_c" id="M_CPD__45__15637_c" name="6-cis-tridecenoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C34H54N7O17P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 957.818</p>
            <p>smiles: CCCCCC\C=C/CCCCC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: UUIVZEBYPBPKLL-DXAZUOFZSA-J</p>
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        </notes>
        <annotation>
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        </annotation>
      </species>
      <species metaid="M_CPD__45__15666_c" id="M_CPD__45__15666_c" name="6-cis, 2-trans-tridecadienoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C34H52N7O17P3S">
        <notes>
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            <p>mass: 955.802</p>
            <p>smiles: CCCCCC\C=C/CC\C=C\C(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: OOSDLBAXVXKFIB-GTUBXKNVSA-J</p>
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        </notes>
        <annotation>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__15654_c" id="M_CPD__45__15654_c" name="2-trans, 4-cis-undecadienoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C32H48N7O17P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 927.749</p>
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      <species metaid="M_CPD__45__15668_c" id="M_CPD__45__15668_c" name="4-cis-undecenoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C32H50N7O17P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 929.765</p>
            <p>smiles: CCCCCC\C=C/CCC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: AFMMIIQKXQNEDN-NSDZGHCESA-J</p>
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        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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      <species metaid="M_CPD__45__15655_c" id="M_CPD__45__15655_c" name="3-trans-undecenoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C32H50N7O17P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 929.765</p>
            <p>smiles: CCCCCCC\C=C\CC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: HVXCCJIYXIZGOP-NADLOITOSA-J</p>
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        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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        </annotation>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 955.802</p>
            <p>smiles: CCCCCC\C=C\CC\C=C\C(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: OOSDLBAXVXKFIB-BJBRNGJVSA-J</p>
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        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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        </annotation>
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      <species metaid="M_CPD__45__15651_c" id="M_CPD__45__15651_c" name="6-trans-tridecenoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C34H54N7O17P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 957.818</p>
            <p>smiles: CCCCCC\C=C\CCCCC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: UUIVZEBYPBPKLL-HMXWSVNBSA-J</p>
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        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__15651_c">
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        </annotation>
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      <species metaid="M_CPD__45__15677_c" id="M_CPD__45__15677_c" name="4-trans-undecenoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C32H50N7O17P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 929.765</p>
            <p>smiles: CCCCCC\C=C\CCC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: AFMMIIQKXQNEDN-DUPKWVSKSA-J</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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                </rdf:Bag>
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        </annotation>
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      <species metaid="M_CPD__45__15661_c" id="M_CPD__45__15661_c" name="2-trans, 4-trans-undecadienoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C32H48N7O17P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 927.749</p>
            <p>smiles: CCCCCC\C=C\C=C\C(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: SZKPLUULGGERFD-MSNZEOPQSA-J</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__15661_c">
              <bqbiol:isVersionOf>
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              </bqbiol:isVersionOf>
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          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__10262_c" id="M_CPD__45__10262_c" name="trans-octadec-2-enoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C39H64N7O17P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1027.951</p>
            <p>smiles: CCCCCCCCCCCCCCC\C=C\C(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: NBCCUIHOHUKBMK-ZDDAFBBHSA-J</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__10262_c">
              <bqbiol:isVersionOf>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Monocarboxylic__45__Acid__45__Amides_c" id="M_Monocarboxylic__45__Acid__45__Amides_c" name="a monocarboxylic acid amide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH2NOR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: NC([*])=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_Monocarboxylates_c" id="M_Monocarboxylates_c" name="a monocarboxylate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CO2R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [O-]C([*])=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_Aldehydes_c" id="M_Aldehydes_c" name="an aldehyde" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CHOR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [H]C([*])=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_Aliphatic__45__Amines_c" id="M_Aliphatic__45__Amines_c" name="an aliphatic amine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="CH5NR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [NH3+]C[*]</p>
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        </notes>
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      <species metaid="M_PHENYLACETALDEHYDE_c" id="M_PHENYLACETALDEHYDE_c" name="phenylacetaldehyde" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H8O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 120.1485</p>
            <p>smiles: [H]C(=O)Cc1ccccc1</p>
            <p>inchikey: DTUQWGWMVIHBKE-UHFFFAOYSA-N</p>
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        </notes>
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            <rdf:Description rdf:about="#M_PHENYLACETALDEHYDE_c">
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      <species metaid="M_PHENYLETHYLAMINE_c" id="M_PHENYLETHYLAMINE_c" name="2-phenylethylamine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H12N">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 122.187</p>
            <p>smiles: [NH3+]CCc1ccccc1</p>
            <p>inchikey: BHHGXPLMPWCGHP-UHFFFAOYSA-O</p>
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        </notes>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 969.828</p>
            <p>smiles: CCCCCC\C=C/CCC\C=C\C(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
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        </annotation>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 971.844</p>
            <p>smiles: CCCCCC\C=C/CCCCCC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 987.844</p>
            <p>smiles: CCCCCC\C=C/CCC[C@H](O)CC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: WGCARZJTIJIWSL-JCJYIPITSA-J</p>
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        </notes>
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        </annotation>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 985.828</p>
            <p>smiles: CCCCCC\C=C/CCCC(=O)CC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 941.775</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 943.791</p>
            <p>smiles: CCCCCC\C=C/CCCC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: RCVJZGBRLGUTKT-CGGPSVLLSA-J</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 959.791</p>
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            <p>inchikey: AYORDFMYYBNSBO-QCCSJADRSA-J</p>
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        <annotation>
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        <notes>
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            <p>mass: 957.775</p>
            <p>smiles: CCCCCC\C=C/CC(=O)CC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: VKLHSLOWDWGVGP-CGGPSVLLSA-J</p>
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        </notes>
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            <p>mass: 862.57</p>
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            <p>inchikey: MZFOKIKEPGUZEN-IBNUZSNCSA-I</p>
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        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_D__45__METHYL__45__MALONYL__45__COA_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C25H40N7O19P3S/c1-12(23(37)38)24(39)55-7-6-27-14(33)4-5-28-21(36)18(35)25(2,3)9-48-54(45,46)51-53(43,44)47-8-13-17(50-52(40,41)42)16(34)22(49-13)32-11-31-15-19(26)29-10-30-20(15)32/h10-13,16-18,22,34-35H,4-9H2,1-3H3,(H,27,33)(H,28,36)(H,37,38)(H,43,44)(H,45,46)(H2,26,29,30)(H2,40,41,42)/p-5/t12-,13+,16+,17+,18-,22+/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_PROTEIN__45__L__45__CITRULLINE_c" id="M_PROTEIN__45__L__45__CITRULLINE_c" name="a [protein]-L-citrulline" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H12N4O3R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Protein__45__L__45__Arginines_c" id="M_Protein__45__L__45__Arginines_c" name="a [protein]-L-arginine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C7H14N5O2R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: NC(=[NH2+])NCCC[C@H](NC(*)=O)C(=O)N*</p>
          </body>
        </notes>
      </species>
      <species metaid="M_D__45__6__45__P__45__GLUCONO__45__DELTA__45__LACTONE_c" id="M_D__45__6__45__P__45__GLUCONO__45__DELTA__45__LACTONE_c" name="6-phospho D-glucono-1,5-lactone" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H9O9P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 256.1051</p>
            <p>smiles: O[C@H]1[C@H](O)[C@@H](COP([O-])([O-])=O)OC(=O)[C@@H]1O</p>
            <p>inchikey: IJOJIVNDFQSGAB-SQOUGZDYSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_D__45__6__45__P__45__GLUCONO__45__DELTA__45__LACTONE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C6H11O9P/c7-3-2(1-14-16(11,12)13)15-6(10)5(9)4(3)8/h2-5,7-9H,1H2,(H2,11,12,13)/p-2/t2-,3-,4+,5-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_44__45__DIMETHYL__45__824__45__CHOLESTADIENOL_c" id="M_44__45__DIMETHYL__45__824__45__CHOLESTADIENOL_c" name="4,4-dimethylzymosterol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H48O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 412.6908</p>
            <p>smiles: [H][C@@]1(CC[C@@]2([H])C3=C(CC[C@]12C)[C@@]1(C)CC[C@H](O)C(C)(C)[C@]1([H])CC3)[C@H](C)CCC=C(C)C</p>
            <p>inchikey: CHGIKSSZNBCNDW-QGBOJXOESA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_44__45__DIMETHYL__45__824__45__CHOLESTADIENOL_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__4577_c" id="M_CPD__45__4577_c" name="4&amp;alpha;-carboxy-4&amp;beta;-methyl-5&amp;alpha;-cholesta-8,24-dien-3&amp;beta;-ol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C29H45O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 441.6663</p>
            <p>smiles: [H][C@@]1(CC[C@@]2([H])C3=C(CC[C@]12C)[C@@]1(C)CC[C@H](O)[C@@](C)(C([O-])=O)[C@]1([H])CC3)[C@H](C)CCC=C(C)C</p>
            <p>inchikey: MYWAIWDQTCHPTH-LJAIZBFVSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__4577_c">
              <bqbiol:isVersionOf>
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                </rdf:Bag>
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        </annotation>
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      <species metaid="M_CPD__45__4578_c" id="M_CPD__45__4578_c" name="3-dehydro-4-methylzymosterol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H44O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 396.6484</p>
            <p>smiles: [H][C@@]1(CC[C@@]2([H])C3=C(CC[C@]12C)[C@@]1(C)CCC(=O)[C@@H](C)[C@]1([H])CC3)[C@H](C)CCC=C(C)C</p>
            <p>inchikey: DBPZYKHQDWKORQ-SINUOACOSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__4578_c">
              <bqbiol:isVersionOf>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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        </annotation>
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      <species metaid="M_CPD__45__4581_c" id="M_CPD__45__4581_c" name="5&amp;alpha;-cholesta-8,24-dien-3-one" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H42O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 382.6218</p>
            <p>smiles: [H]C(C)(CCC=C(C)C)C1([H])CCC2([H])C3=C(CC[C@]12C)[C@@]1(C)CCC(=O)CC1([H])CC3</p>
            <p>inchikey: AUNLIRXIJAVBNM-HJWVNVQISA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__4581_c">
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_ZYMOSTEROL_c" id="M_ZYMOSTEROL_c" name="zymosterol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 384.6377</p>
            <p>smiles: [H][C@@]1(CC[C@@]2([H])C3=C(CC[C@]12C)[C@@]1(C)CC[C@H](O)C[C@]1([H])CC3)[C@H](C)CCC=C(C)C</p>
            <p>inchikey: CGSJXLIKVBJVRY-XTGBIJOFSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_ZYMOSTEROL_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C27H44O/c1-18(2)7-6-8-19(3)23-11-12-24-22-10-9-20-17-21(28)13-15-26(20,4)25(22)14-16-27(23,24)5/h7,19-21,23-24,28H,6,8-17H2,1-5H3/t19-,20+,21+,23-,24+,26+,27-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_PYRIDOXAMINE_c" id="M_PYRIDOXAMINE_c" name="pyridoxamine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C8H13N2O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 169.2005</p>
            <p>smiles: Cc1ncc(CO)c(C[NH3+])c1O</p>
            <p>inchikey: NHZMQXZHNVQTQA-UHFFFAOYSA-O</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_PYRIDOXAMINE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C8H12N2O2/c1-5-8(12)7(2-9)6(4-11)3-10-5/h3,11-12H,2,4,9H2,1H3/p+1"/>
                </rdf:Bag>
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      </species>
      <species metaid="M_S__45__3__45__HYDROXYBUTANOYL__45__COA_c" id="M_S__45__3__45__HYDROXYBUTANOYL__45__COA_c" name="(S)-3-hydroxybutanoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C25H38N7O18P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 849.594</p>
            <p>smiles: C[C@H](O)CC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: QHHKKMYHDBRONY-VKBDFPRVSA-J</p>
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        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_S__45__3__45__HYDROXYBUTANOYL__45__COA_c">
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        </annotation>
      </species>
      <species metaid="M_ACETOACETYL__45__COA_c" id="M_ACETOACETYL__45__COA_c" name="acetoacetyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C25H36N7O18P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 847.578</p>
            <p>smiles: CC(=O)CC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: OJFDKHTZOUZBOS-CITAKDKDSA-J</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_ACETOACETYL__45__COA_c">
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      </species>
      <species metaid="M_CH3__45__MALONATE__45__S__45__ALD_c" id="M_CH3__45__MALONATE__45__S__45__ALD_c" name="(S)-methylmalonate-semialdehyde" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H5O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 101.0812</p>
            <p>smiles: C[C@@H](C=O)C([O-])=O</p>
            <p>inchikey: VOKUMXABRRXHAR-VKHMYHEASA-M</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_CH3__45__MALONATE__45__S__45__ALD_c">
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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      </species>
      <species metaid="M_CPD__45__12175_c" id="M_CPD__45__12175_c" name="(S)-3-hydroxy-isobutanoate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H7O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 103.0971</p>
            <p>smiles: C[C@@H](CO)C([O-])=O</p>
            <p>inchikey: DBXBTMSZEOQQDU-VKHMYHEASA-M</p>
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        </notes>
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        <notes>
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            <p>mass: 482.7391</p>
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        <notes>
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            <p>mass: 534.8568</p>
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            <p>mass: 969.828</p>
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            <p>mass: 967.813</p>
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        <notes>
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            <p>mass: 180.1559</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 180.1559</p>
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        <notes>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 164.1565</p>
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            <p>mass: 150.1299</p>
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            <p>mass: 150.1299</p>
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      <species metaid="M_CPD__45__9007_c" id="M_CPD__45__9007_c" name="ADP ribose 1&apos;&apos;,2&apos;&apos;-cyclic phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C15H19N5O16P3">
        <notes>
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            <p>mass: 618.2582</p>
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      <species metaid="M_3__45__oxo__45__petroselinoyl__45__ACPs_c" id="M_3__45__oxo__45__petroselinoyl__45__ACPs_c" name="a 3-oxo-petroselinoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
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            <p>mass: 350.2335</p>
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      <species metaid="M_R__45__3__45__hydroxypetroselinoyl__45__ACPs_c" id="M_R__45__3__45__hydroxypetroselinoyl__45__ACPs_c" name="a (3R)-3-hydroxypetroselinoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_N__45__Substituted__45__Amino__45__Acids_c" id="M_N__45__Substituted__45__Amino__45__Acids_c" name="an N-modified amino acid" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H2NO3R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_N__45__Substituted__45__Aminoacyl__45__tRNA_c" id="M_N__45__Substituted__45__Aminoacyl__45__tRNA_c" name="an N-modified aminoacyl-[tRNA]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__259_c" id="M_CPD__45__259_c" name="4-aminophenol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H7NO">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 109.1259</p>
            <p>smiles: Nc1ccc(O)cc1</p>
            <p>inchikey: PLIKAWJENQZMHA-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__259_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C6H7NO/c7-5-1-3-6(8)4-2-5/h1-4,8H,7H2"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_AMINO__45__PARATHION_c" id="M_AMINO__45__PARATHION_c" name="amino-parathion" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H16NO3PS">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 261.278</p>
            <p>smiles: CCOP(=S)(OCC)Oc1ccc(N)cc1</p>
            <p>inchikey: XIZOTXGJXSTQDI-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_AMINO__45__PARATHION_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C10H16NO3PS/c1-3-12-15(16,13-4-2)14-10-7-5-9(11)6-8-10/h5-8H,3-4,11H2,1-2H3"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__330_c" id="M_CPD__45__330_c" name="L-galactono-1,4-lactone" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 178.14</p>
            <p>smiles: [H][C@@]1(OC(=O)[C@@H](O)[C@@H]1O)[C@@H](O)CO</p>
            <p>inchikey: SXZYCXMUPBBULW-NEEWWZBLSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__330_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C6H10O6/c7-1-2(8)5-3(9)4(10)6(11)12-5/h2-5,7-10H,1H2/t2-,3-,4-,5+/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Lysidine__45__tRNA__45__Ile2_c" id="M_Lysidine__45__tRNA__45__Ile2_c" name="a lysidine34 in tRNAIle2" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Cytidine__45__34__45__tRNAIle2_c" id="M_Cytidine__45__34__45__tRNAIle2_c" name="a cytidine34 in tRNAIle2" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H11N3O11P2R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: Nc1ccn([C@@H]2O[C@H](COP([O-])(=O)O*)[C@@H](OP([O-])(=O)O*)[C@H]2O)c(=O)n1</p>
          </body>
        </notes>
      </species>
      <species metaid="M_CPD__45__674_c" id="M_CPD__45__674_c" name="trans-cinnamate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H7O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 147.1512</p>
            <p>smiles: [O-]C(=O)\C=C\c1ccccc1</p>
            <p>inchikey: WBYWAXJHAXSJNI-VOTSOKGWSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__674_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C9H8O2/c10-9(11)7-6-8-4-2-1-3-5-8/h1-7H,(H,10,11)/p-1/b7-6+"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_GLC__45__D__45__LACTONE_c" id="M_GLC__45__D__45__LACTONE_c" name="D-glucono-1,5-lactone" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 178.14</p>
            <p>smiles: OC[C@H]1OC(=O)[C@H](O)[C@@H](O)[C@@H]1O</p>
            <p>inchikey: PHOQVHQSTUBQQK-SQOUGZDYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_GLC__45__D__45__LACTONE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C6H10O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-5,7-10H,1H2/t2-,3-,4+,5-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_GLUCONATE_c" id="M_GLUCONATE_c" name="D-gluconate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O7">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 195.1479</p>
            <p>smiles: OC[C@@H](O)[C@@H](O)[C@H](O)[C@@H](O)C([O-])=O</p>
            <p>inchikey: RGHNJXZEOKUKBD-SQOUGZDYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_GLUCONATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C6H12O7/c7-1-2(8)3(9)4(10)5(11)6(12)13/h2-5,7-11H,1H2,(H,12,13)/p-1/t2-,3-,4+,5-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_D__45__GLUCOSAMINE__45__6__45__P_c" id="M_D__45__GLUCOSAMINE__45__6__45__P_c" name="D-glucosamine 6-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H13NO8P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 258.1436</p>
            <p>smiles: [NH3+][C@H]1C(O)O[C@H](COP([O-])([O-])=O)[C@@H](O)[C@@H]1O</p>
            <p>inchikey: XHMJOUIAFHJHBW-IVMDWMLBSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_D__45__GLUCOSAMINE__45__6__45__P_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C6H14NO8P/c7-3-5(9)4(8)2(15-6(3)10)1-14-16(11,12)13/h2-6,8-10H,1,7H2,(H2,11,12,13)/p-1/t2-,3-,4-,5-,6?/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_LEUKOTRIENE__45__C4_c" id="M_LEUKOTRIENE__45__C4_c" name="leukotriene-C4" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C30H45N3O9S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 623.759</p>
            <p>smiles: CCCCC\C=C/C\C=C/C=C/C=C/[C@@H](SC[C@H](NC(=O)CC[C@H]([NH3+])C([O-])=O)C(=O)NCC([O-])=O)[C@@H](O)CCCC([O-])=O</p>
            <p>inchikey: GWNVDXQDILPJIG-NXOLIXFESA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_LEUKOTRIENE__45__C4_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C30H47N3O9S/c1-2-3-4-5-6-7-8-9-10-11-12-13-16-25(24(34)15-14-17-27(36)37)43-21-23(29(40)32-20-28(38)39)33-26(35)19-18-22(31)30(41)42/h6-7,9-13,16,22-25,34H,2-5,8,14-15,17-21,31H2,1H3,(H,32,40)(H,33,35)(H,36,37)(H,38,39)(H,41,42)/p-2/b7-6-,10-9-,12-11+,16-13+/t22-,23-,24-,25+/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD66__45__21_c" id="M_CPD66__45__21_c" name="leukotriene-D4" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H39N2O6S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 495.653</p>
            <p>smiles: CCCCC\C=C/C\C=C/C=C/C=C/[C@@H](SC[C@H]([NH3+])C(=O)NCC([O-])=O)[C@@H](O)CCCC([O-])=O</p>
            <p>inchikey: YEESKJGWJFYOOK-IJHYULJSSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD66__45__21_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C25H40N2O6S/c1-2-3-4-5-6-7-8-9-10-11-12-13-16-22(21(28)15-14-17-23(29)30)34-19-20(26)25(33)27-18-24(31)32/h6-7,9-13,16,20-22,28H,2-5,8,14-15,17-19,26H2,1H3,(H,27,33)(H,29,30)(H,31,32)/p-1/b7-6-,10-9-,12-11+,16-13+/t20-,21-,22+/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_3__45__Methyl__45__Saturated__45__Fatty__45__Acids_c" id="M_3__45__Methyl__45__Saturated__45__Fatty__45__Acids_c" name="a 3-methyl-branched 2,3,4-saturated fatty acid" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H8O2R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CC(C[*])CC([O-])=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_3__45__Methyl__45__Saturated__45__Fatty__45__Acyl__45__CoA_c" id="M_3__45__Methyl__45__Saturated__45__Fatty__45__Acyl__45__CoA_c" name="a 3-methyl-branched 2,3,4-saturated fatty acyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C26H39N7O17P3SR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CC(C[*])CC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
          </body>
        </notes>
      </species>
      <species metaid="M_2__45__OH__45__3__45__Methyl__45__Saturated__45__Fatty__45__Acyl__45__CoA_c" id="M_2__45__OH__45__3__45__Methyl__45__Saturated__45__Fatty__45__Acyl__45__CoA_c" name="a 2-hydroxy-3-methyl-branched 2,3,4-saturated fatty acyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C26H39N7O18P3SR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CC(C[*])C(O)C(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
          </body>
        </notes>
      </species>
      <species metaid="M_2__45__Me__45__Branched__45__234__45__Sat__45__FA_c" id="M_2__45__Me__45__Branched__45__234__45__Sat__45__FA_c" name="a 2-methyl branched 2,3,4-saturated fatty acid" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H6O2R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CC(C[*])C([O-])=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_2__45__Me__45__Branched__45__234__45__Sat__45__FALD_c" id="M_2__45__Me__45__Branched__45__234__45__Sat__45__FALD_c" name="a 2-methyl branched 2,3,4-saturated fatty aldehyde" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H7OR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [H]C(=O)C(C)C[*]</p>
          </body>
        </notes>
      </species>
      <species metaid="M_PYRIDOXAMINE__45__5P_c" id="M_PYRIDOXAMINE__45__5P_c" name="pyridoxamine 5&apos;-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H12N2O5P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 247.1656</p>
            <p>smiles: Cc1ncc(COP([O-])([O-])=O)c(C[NH3+])c1O</p>
            <p>inchikey: ZMJGSOSNSPKHNH-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_PYRIDOXAMINE__45__5P_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C8H13N2O5P/c1-5-8(11)7(2-9)6(3-10-5)4-15-16(12,13)14/h3,11H,2,4,9H2,1H3,(H2,12,13,14)/p-1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_PYRAZINAMIDE_c" id="M_PYRAZINAMIDE_c" name="pyrazinamide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H5N3O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 123.1127</p>
            <p>smiles: NC(=O)c1cnccn1</p>
            <p>inchikey: IPEHBUMCGVEMRF-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_PYRAZINAMIDE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C5H5N3O/c6-5(9)4-3-7-1-2-8-4/h1-3H,(H2,6,9)"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_PYRAZINOIC__45__ACID_c" id="M_PYRAZINOIC__45__ACID_c" name="pyrazine-2-carboxylate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H3N2O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 123.0901</p>
            <p>smiles: [O-]C(=O)c1cnccn1</p>
            <p>inchikey: NIPZZXUFJPQHNH-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_PYRAZINOIC__45__ACID_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C5H4N2O2/c8-5(9)4-3-6-1-2-7-4/h1-3H,(H,8,9)/p-1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_PYRIDOXAL_PHOSPHATE_c" id="M_PYRIDOXAL_PHOSPHATE_c" name="pyridoxal 5&apos;-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H8NO6P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 245.1271</p>
            <p>smiles: [H]C(=O)c1c(COP([O-])([O-])=O)cnc(C)c1O</p>
            <p>inchikey: NGVDGCNFYWLIFO-UHFFFAOYSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_PYRIDOXAL_PHOSPHATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C8H10NO6P/c1-5-8(11)7(3-10)6(2-9-5)4-15-16(12,13)14/h2-3,11H,4H2,1H3,(H2,12,13,14)/p-2"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_PYRIDOXAL_c" id="M_PYRIDOXAL_c" name="pyridoxal" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H9NO3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 167.162</p>
            <p>smiles: [H]C(=O)c1c(CO)cnc(C)c1O</p>
            <p>inchikey: RADKZDMFGJYCBB-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_PYRIDOXAL_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C8H9NO3/c1-5-8(12)7(4-11)6(3-10)2-9-5/h2,4,10,12H,3H2,1H3"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__9247_c" id="M_CPD__45__9247_c" name="cis-vaccenate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H33O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 281.454</p>
            <p>smiles: CCCCCC\C=C/CCCCCCCCCC([O-])=O</p>
            <p>inchikey: UWHZIFQPPBDJPM-FPLPWBNLSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__9247_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C18H34O2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18(19)20/h7-8H,2-6,9-17H2,1H3,(H,19,20)/p-1/b8-7-"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Cis__45__vaccenoyl__45__ACPs_c" id="M_Cis__45__vaccenoyl__45__ACPs_c" name="a cis-vaccenoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H33OSR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CCCCCC\C=C/CCCCCCCCCC(=O)S*</p>
          </body>
        </notes>
      </species>
      <species metaid="M_R__45__3__45__hydroxy__45__cis__45__vaccenoyl__45__ACPs_c" id="M_R__45__3__45__hydroxy__45__cis__45__vaccenoyl__45__ACPs_c" name="(R)-3-hydroxy-cis-vacc-11-enoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H33O2SR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_3__45__oxo__45__cis__45__vaccenoyl__45__ACPs_c" id="M_3__45__oxo__45__cis__45__vaccenoyl__45__ACPs_c" name="a 3-oxo-cis-vacc-11-enoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H31O2SR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_cis__45__vaccen__45__2__45__enoyl__45__ACPs_c" id="M_cis__45__vaccen__45__2__45__enoyl__45__ACPs_c" name="a (2-trans-11-cis)-vaccen-2-enoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H31OSR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Primary__45__Amines_c" id="M_Primary__45__Amines_c" name="a primary amine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="CH5NR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [NH3+]C[*]</p>
          </body>
        </notes>
      </species>
      <species metaid="M_CPD__45__9451_c" id="M_CPD__45__9451_c" name="2-isopropylmaleate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C7H8O4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 156.1371</p>
            <p>smiles: CC(C)C(=C\C([O-])=O)\C([O-])=O</p>
            <p>inchikey: NJMGRJLQRLFQQX-HYXAFXHYSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__9451_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_BUTYRIC_ACID_c" id="M_BUTYRIC_ACID_c" name="butanoate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H7O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 87.0977</p>
            <p>smiles: CCCC([O-])=O</p>
            <p>inchikey: FERIUCNNQQJTOY-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_BUTYRIC_ACID_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C4H8O2/c1-2-3-4(5)6/h2-3H2,1H3,(H,5,6)/p-1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__13014_c" id="M_CPD__45__13014_c" name="tributyrin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H26O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 302.3633</p>
            <p>smiles: CCCC(=O)OCC(COC(=O)CCC)OC(=O)CCC</p>
            <p>inchikey: UYXTWWCETRIEDR-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__13014_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C15H26O6/c1-4-7-13(16)19-10-12(21-15(18)9-6-3)11-20-14(17)8-5-2/h12H,4-11H2,1-3H3"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__13040_c" id="M_CPD__45__13040_c" name="1,2-dibutyrin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H20O5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 232.2735</p>
            <p>smiles: CCCC(=O)OCC(CO)OC(=O)CCC</p>
            <p>inchikey: AWHAUPZHZYUHOM-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__13040_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_ALPHA__45__D__45__GALACTOSE_c" id="M_ALPHA__45__D__45__GALACTOSE_c" name="&amp;alpha;-D-galactose" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 180.1559</p>
            <p>smiles: OC[C@H]1O[C@H](O)[C@H](O)[C@@H](O)[C@H]1O</p>
            <p>inchikey: WQZGKKKJIJFFOK-PHYPRBDBSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_ALPHA__45__D__45__GALACTOSE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3+,4+,5-,6+/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_1__45__4__45__alpha__45__D__45__Glucan_c" id="M_1__45__4__45__alpha__45__D__45__Glucan_c" name="a 1,4-&amp;alpha;-D-glucan" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Alpha__45__D__45__Galactosides_c" id="M_Alpha__45__D__45__Galactosides_c" name="an &amp;alpha;-D-galactoside" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H11O6R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: OC[C@H]1O[C@H](O[*])[C@H](O)[C@@H](O)[C@H]1O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_N__45__acetyl__45__D__45__galactosamine_c" id="M_N__45__acetyl__45__D__45__galactosamine_c" name="N-acetyl-D-galactosamine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15NO6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 221.2078</p>
            <p>smiles: CC(=O)N[C@H]1C(O)O[C@H](CO)[C@H](O)[C@@H]1O</p>
            <p>inchikey: OVRNDRQMDRJTHS-KEWYIRBNSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_N__45__acetyl__45__D__45__galactosamine_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C8H15NO6/c1-3(11)9-5-7(13)6(12)4(2-10)15-8(5)14/h4-8,10,12-14H,2H2,1H3,(H,9,11)/t4-,5-,6+,7-,8?/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__36_c" id="M_CPD__45__36_c" name="4-deoxy-&amp;beta;-D-gluc-4-enuronosyl-(1,3)-N-acetyl-D-galactosamine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C14H20NO11">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 378.3092</p>
            <p>smiles: CC(=O)N[C@H]1C(O)O[C@H](CO)[C@H](O)[C@@H]1O[C@@H]1OC(=C[C@H](O)[C@H]1O)C([O-])=O</p>
            <p>inchikey: DLGJWSVWTWEWBJ-ZTVLJYEESA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__36_c">
              <bqbiol:isVersionOf>
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                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C14H21NO11/c1-4(17)15-8-11(10(20)7(3-16)24-13(8)23)26-14-9(19)5(18)2-6(25-14)12(21)22/h2,5,7-11,13-14,16,18-20,23H,3H2,1H3,(H,15,17)(H,21,22)/p-1/t5-,7+,8+,9+,10-,11+,13?,14-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__17638_c" id="M_CPD__45__17638_c" name="7-hydroxylauroyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H54N7O18P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 961.806</p>
            <p>smiles: CCCCCC(O)CCCCCC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: RXEDUSGPUQQZEW-XIRPNGCASA-J</p>
          </body>
        </notes>
        <annotation>
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        </annotation>
      </species>
      <species metaid="M_CPD__45__17637_c" id="M_CPD__45__17637_c" name="7-hydroxylaurate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H23O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 215.3098</p>
            <p>smiles: CCCCCC(O)CCCCCC([O-])=O</p>
            <p>inchikey: BNWKMHUFFKDAMV-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
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      <species metaid="M_MANNITOL__45__1P_c" id="M_MANNITOL__45__1P_c" name="D-mannitol 1-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H13O9P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 260.1369</p>
            <p>smiles: OC[C@@H](O)[C@@H](O)[C@H](O)[C@H](O)COP([O-])([O-])=O</p>
            <p>inchikey: GACTWZZMVMUKNG-KVTDHHQDSA-L</p>
          </body>
        </notes>
        <annotation>
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      <species metaid="M_ADENOSINE_c" id="M_ADENOSINE_c" name="adenosine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 267.2413</p>
            <p>smiles: Nc1ncnc2n(cnc12)[C@@H]1O[C@H](CO)[C@@H](O)[C@H]1O</p>
            <p>inchikey: OIRDTQYFTABQOQ-KQYNXXCUSA-N</p>
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        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_ADENOSINE_c">
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        </annotation>
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      <species metaid="M_CPD__45__514_c" id="M_CPD__45__514_c" name="3-oxo-3-phenylpropanoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C30H38N7O18P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 909.647</p>
            <p>smiles: CC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12)[C@@H](O)C(=O)NCCC(=O)NCCSC(=O)CC(=O)c1ccccc1</p>
            <p>inchikey: NHDPIYICCBKNNJ-FUEUKBNZSA-J</p>
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        <annotation>
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        </annotation>
      </species>
      <species metaid="M_ADENYLOSUCC_c" id="M_ADENYLOSUCC_c" name="adenylo-succinate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C14H14N5O11P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 459.2638</p>
            <p>smiles: [H][C@@](CC([O-])=O)(Nc1ncnc2n(cnc12)[C@]1([H])O[C@]([H])(COP([O-])([O-])=O)[C@@]([H])(O)[C@@]1([H])O)C([O-])=O</p>
            <p>inchikey: OFBHPPMPBOJXRT-VWJPMABRSA-J</p>
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        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_ADENYLOSUCC_c">
              <bqbiol:isVersionOf>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_BENZOYLCOA_c" id="M_BENZOYLCOA_c" name="benzoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C28H36N7O17P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 867.611</p>
            <p>smiles: CC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12)[C@@H](O)C(=O)NCCC(=O)NCCSC(=O)c1ccccc1</p>
            <p>inchikey: VEVJTUNLALKRNO-TYHXJLICSA-J</p>
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        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_BENZOYLCOA_c">
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CELLULOSE_c" id="M_CELLULOSE_c" name="cellulose" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Cellodextrins_c" id="M_Cellodextrins_c" name="a cellodextrin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD0__45__1108_c" id="M_CPD0__45__1108_c" name="&amp;beta;-D-ribofuranose" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 150.1299</p>
            <p>smiles: OC[C@H]1O[C@@H](O)[C@H](O)[C@@H]1O</p>
            <p>inchikey: HMFHBZSHGGEWLO-TXICZTDVSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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              <bqbiol:isVersionOf>
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                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C5H10O5/c6-1-2-3(7)4(8)5(9)10-2/h2-9H,1H2/t2-,3-,4-,5-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
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        </annotation>
      </species>
      <species metaid="M_CPD__45__23708_c" id="M_CPD__45__23708_c" name="(3&amp;beta;,9&amp;beta;)-4&amp;alpha;-demethyl-4&amp;alpha;-carboxy-9,19-cyclolanost-24-en-3-ol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/>
      <species metaid="M_Protein__45__Phosphothreonines_c" id="M_Protein__45__Phosphothreonines_c" name="a [protein] L-threonine phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Proteins__45__L__45__Threonines_c" id="M_Proteins__45__L__45__Threonines_c" name="a [protein]-L-threonine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H8N2O3R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__23709_c" id="M_CPD__45__23709_c" name="31-norcycloartenone" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/>
      <species metaid="M_CHORISMATE_c" id="M_CHORISMATE_c" name="chorismate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H8O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 224.168</p>
            <p>smiles: O[C@@H]1C=CC(=C[C@H]1OC(=C)C([O-])=O)C([O-])=O</p>
            <p>inchikey: WTFXTQVDAKGDEY-HTQZYQBOSA-L</p>
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        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CHORISMATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C10H10O6/c1-5(9(12)13)16-8-4-6(10(14)15)2-3-7(8)11/h2-4,7-8,11H,1H2,(H,12,13)(H,14,15)/p-2/t7-,8-/m1/s1"/>
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              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_N__45__ACETYL__45__D__45__GLUCOSAMINE__45__6__45__P_c" id="M_N__45__ACETYL__45__D__45__GLUCOSAMINE__45__6__45__P_c" name="N-acetyl-D-glucosamine 6-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H14NO9P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 299.1729</p>
            <p>smiles: CC(=O)N[C@H]1C(O)O[C@H](COP([O-])([O-])=O)[C@@H](O)[C@@H]1O</p>
            <p>inchikey: BRGMHAYQAZFZDJ-RTRLPJTCSA-L</p>
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        <annotation>
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            <rdf:Description rdf:about="#M_N__45__ACETYL__45__D__45__GLUCOSAMINE__45__6__45__P_c">
              <bqbiol:isVersionOf>
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      <species metaid="M_R2OH__45__Straight__45__Chain__45__234__45__Sat__45__FA_c" id="M_R2OH__45__Straight__45__Chain__45__234__45__Sat__45__FA_c" name="a (2R)-2-hydroxy even numbered straight chain 2,3,4-saturated fatty acid" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H6O3R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: O[C@H](CC[*])C([O-])=O</p>
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        </notes>
      </species>
      <species metaid="M_R2__45__2OH__45__Straight__45__Chain__45__234__45__Sat__45__FA__45__CoA_c" id="M_R2__45__2OH__45__Straight__45__Chain__45__234__45__Sat__45__FA__45__CoA_c" name="a (R)-2-hydroxy even numbered straight chain 2,3,4-saturated fatty acyl CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C25H37N7O18P3SR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12)[C@@H](O)C(=O)NCCC(=O)NCCSC(=O)[C@H](O)CC[*]</p>
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        </notes>
      </species>
      <species metaid="M_Odd__45__Straight__45__Chain__45__234__45__Sat__45__FALD_c" id="M_Odd__45__Straight__45__Chain__45__234__45__Sat__45__FALD_c" name="an odd numbered straight chain 2,3,4-saturated fatty aldehyde" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H5OR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [H]C(=O)CC[*]</p>
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        </notes>
      </species>
      <species metaid="M_Odd__45__Straight__45__Chain__45__234__45__Sat__45__FA_c" id="M_Odd__45__Straight__45__Chain__45__234__45__Sat__45__FA_c" name="an odd numbered straight chain 2,3,4-saturated fatty acid" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H4O2R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [O-]C(=O)CC[*]</p>
          </body>
        </notes>
      </species>
      <species metaid="M_Odd__45__Saturated__45__Fatty__45__Acyl__45__CoA_c" id="M_Odd__45__Saturated__45__Fatty__45__Acyl__45__CoA_c" name="an odd numbered straight chain 2,3,4-saturated fatty acyl CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C24H35N7O17P3SR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12)[C@@H](O)C(=O)NCCC(=O)NCCSC(=O)CC[*]</p>
          </body>
        </notes>
      </species>
      <species metaid="M_CPD__45__14926_c" id="M_CPD__45__14926_c" name="phytenal" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H38O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 294.5151</p>
            <p>smiles: [H]C(=O)\C=C(/C)CCC[C@H](C)CCC[C@H](C)CCCC(C)C</p>
            <p>inchikey: RAFZYSUICBQABU-PYDDKJGSSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__14926_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__14927_c" id="M_CPD__45__14927_c" name="phytenate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H37O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 309.5071</p>
            <p>smiles: CC(C)CCC[C@@H](C)CCC[C@@H](C)CCC\C(C)=C\C([O-])=O</p>
            <p>inchikey: WDWBNNBRPVEEOD-PFXVRADUSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__14927_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C20H38O2/c1-16(2)9-6-10-17(3)11-7-12-18(4)13-8-14-19(5)15-20(21)22/h15-18H,6-14H2,1-5H3,(H,21,22)/p-1/b19-15+/t17-,18-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_AMINO__45__HYDROXYMETHYL__45__METHYL__45__PYR__45__P_c" id="M_AMINO__45__HYDROXYMETHYL__45__METHYL__45__PYR__45__P_c" name="4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8N3O4P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 217.1203</p>
            <p>smiles: Cc1ncc(COP([O-])([O-])=O)c(N)n1</p>
            <p>inchikey: PKYFHKIYHBRTPI-UHFFFAOYSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_AMINO__45__HYDROXYMETHYL__45__METHYL__45__PYR__45__P_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C6H10N3O4P/c1-4-8-2-5(6(7)9-4)3-13-14(10,11)12/h2H,3H2,1H3,(H2,7,8,9)(H2,10,11,12)/p-2"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_AMMONIUM_e" id="M_AMMONIUM_e" name="ammonium" compartment="e" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H4N">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 18.0379</p>
            <p>smiles: [H][N+]([H])([H])[H]</p>
            <p>inchikey: QGZKDVFQNNGYKY-UHFFFAOYSA-O</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_AMMONIUM_e">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/H3N/h1H3/p+1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_OH__45__ACYL__45__ACP_c" id="M_OH__45__ACYL__45__ACP_c" name="a (3R)-3-hydroxyacyl-[acyl-carrier protein]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_B__45__KETOACYL__45__ACP_c" id="M_B__45__KETOACYL__45__ACP_c" name="a 3-oxoacyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Acetoacetyl__45__ACPs_c" id="M_Acetoacetyl__45__ACPs_c" name="an acetoacetyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H5O2SR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CC(=O)CC(=O)S[*]</p>
          </body>
        </notes>
      </species>
      <species metaid="M_ACETYL__45__ACP_c" id="M_ACETYL__45__ACP_c" name="an acetyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H3OSR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CC(=O)S[*]</p>
          </body>
        </notes>
      </species>
      <species metaid="M_Saturated__45__Fatty__45__Acyl__45__ACPs_c" id="M_Saturated__45__Fatty__45__Acyl__45__ACPs_c" name="a 2,3,4-saturated fatty acyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_MANNITOL_c" id="M_MANNITOL_c" name="D-mannitol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H14O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 182.1718</p>
            <p>smiles: OC[C@@H](O)[C@@H](O)[C@H](O)[C@H](O)CO</p>
            <p>inchikey: FBPFZTCFMRRESA-KVTDHHQDSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_MANNITOL_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C6H14O6/c7-1-3(9)5(11)6(12)4(10)2-8/h3-12H,1-2H2/t3-,4-,5-,6-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__24185_c" id="M_CPD__45__24185_c" name="CPD-24185" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/>
      <species metaid="M_CPD__45__22095_c" id="M_CPD__45__22095_c" name="fucosterol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/>
      <species metaid="M_CPD__45__24184_c" id="M_CPD__45__24184_c" name="CPD-24184" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/>
      <species metaid="M_TRANS__45__23__45__DEHYDROADIPYL__45__COA_c" id="M_TRANS__45__23__45__DEHYDROADIPYL__45__COA_c" name="trans-2,3-dehydroadipyl-coA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C27H37N7O19P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 888.607</p>
            <p>smiles: CC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12)C(O)C(=O)NCCC(=O)NCCSC(=O)\C=C\CCC([O-])=O</p>
            <p>inchikey: ZFXICKRXPZTFPB-UWIQVNQSSA-I</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_TRANS__45__23__45__DEHYDROADIPYL__45__COA_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C27H42N7O19P3S/c1-27(2,22(40)25(41)30-8-7-16(35)29-9-10-57-18(38)6-4-3-5-17(36)37)12-50-56(47,48)53-55(45,46)49-11-15-21(52-54(42,43)44)20(39)26(51-15)34-14-33-19-23(28)31-13-32-24(19)34/h4,6,13-15,20-22,26,39-40H,3,5,7-12H2,1-2H3,(H,29,35)(H,30,41)(H,36,37)(H,45,46)(H,47,48)(H2,28,31,32)(H2,42,43,44)/p-5/b6-4+/t15-,20-,21-,22?,26-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
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          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__15979_c" id="M_CPD__45__15979_c" name="D-mannopyranose 6-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 258.121</p>
            <p>smiles: OC1O[C@H](COP([O-])([O-])=O)[C@@H](O)[C@H](O)[C@@H]1O</p>
            <p>inchikey: NBSCHQHZLSJFNQ-QTVWNMPRSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__15979_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C6H13O9P/c7-3-2(1-14-16(11,12)13)15-6(10)5(9)4(3)8/h2-10H,1H2,(H2,11,12,13)/p-2/t2-,3-,4+,5+,6?/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_MPBQ_c" id="M_MPBQ_c" name="2-methyl-6-phytyl-1,4-benzoquinol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 402.6529</p>
            <p>smiles: CC(C)CCC[C@@H](C)CCC[C@@H](C)CCC\C(C)=C\Cc1cc(O)cc(C)c1O</p>
            <p>inchikey: GTWCNYRFOZKWTL-UOFXASEASA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_MPBQ_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C27H46O2/c1-20(2)10-7-11-21(3)12-8-13-22(4)14-9-15-23(5)16-17-25-19-26(28)18-24(6)27(25)29/h16,18-22,28-29H,7-15,17H2,1-6H3/b23-16+/t21-,22-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_BCAA__45__dehydrogenase__45__DH__45__lipoyl_c" id="M_BCAA__45__dehydrogenase__45__DH__45__lipoyl_c" name="an [apo BCAA dehydrogenase E2 protein] N6-dihydrolipoyl-L-lysine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H15OS2R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__1130_c" id="M_CPD__45__1130_c" name="3-ethylmalate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8O5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 160.1258</p>
            <p>smiles: CCC(C(O)C([O-])=O)C([O-])=O</p>
            <p>inchikey: JUCRENBZZQKFGK-UHFFFAOYSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__1130_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C6H10O5/c1-2-3(5(8)9)4(7)6(10)11/h3-4,7H,2H2,1H3,(H,8,9)(H,10,11)/p-2"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__3618_c" id="M_CPD__45__3618_c" name="2-oxovalerate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H7O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 115.1078</p>
            <p>smiles: CCCC(=O)C([O-])=O</p>
            <p>inchikey: KDVFRMMRZOCFLS-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__3618_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C5H8O3/c1-2-3-4(6)5(7)8/h2-3H2,1H3,(H,7,8)/p-1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_LysW__45__L__45__glutamate__45__5__45__phosphate_c" id="M_LysW__45__L__45__glutamate__45__5__45__phosphate_c" name="an [L-2-aminoadipate carrier protein]-L-glutamate 5-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H13N2O10PR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [O-]C(=O)[C@H](CCC(=O)OP([O-])([O-])=O)NC(=O)CC[C@H]([NH2+]*)C([O-])=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_LysW__45__L__45__glutamate_c" id="M_LysW__45__L__45__glutamate_c" name="an [L-2-aminoadipate carrier protein]-L-glutamate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H13N2O7R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [O-]C(=O)CC[C@H](NC(=O)CC[C@H]([NH2+]*)C([O-])=O)C([O-])=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_LysW__45__L__45__glutamate__45__5__45__semialdehyde_c" id="M_LysW__45__L__45__glutamate__45__5__45__semialdehyde_c" name="an [L-2-aminoadipate carrier protein]-L-glutamate 5-semialdehyde" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H14N2O6R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [H]C(=O)CC[C@H](NC(=O)CC[C@H]([NH2+]*)C([O-])=O)C([O-])=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_LysW__45__L__45__ornithine_c" id="M_LysW__45__L__45__ornithine_c" name="an [L-2-aminoadipate carrier protein]-L-ornithine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H18N3O5R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [NH3+]CCC[C@H](NC(=O)CC[C@H]([NH2+]*)C([O-])=O)C([O-])=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_N__45__ALPHA__45__ACETYLORNITHINE_c" id="M_N__45__ALPHA__45__ACETYLORNITHINE_c" name="N-acetyl-L-ornithine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H14N2O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 174.1977</p>
            <p>smiles: CC(=O)N[C@@H](CCC[NH3+])C([O-])=O</p>
            <p>inchikey: JRLGPAXAGHMNOL-LURJTMIESA-N</p>
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            <rdf:Description rdf:about="#M_N__45__ALPHA__45__ACETYLORNITHINE_c">
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      <species metaid="M_ARACHIDIC_ACID_c" id="M_ARACHIDIC_ACID_c" name="arachidate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H39O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 311.523</p>
            <p>smiles: CCCCCCCCCCCCCCCCCCCC([O-])=O</p>
            <p>inchikey: VKOBVWXKNCXXDE-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
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      <species metaid="M_3__45__oxo__45__stearoyl__45__ACPs_c" id="M_3__45__oxo__45__stearoyl__45__ACPs_c" name="a 3-oxo-stearoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H33O2SR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CCCCCCCCCCCCCCCC(=O)CC(=O)S[*]</p>
          </body>
        </notes>
      </species>
      <species metaid="M_R__45__3__45__hydroxystearoyl__45__ACPs_c" id="M_R__45__3__45__hydroxystearoyl__45__ACPs_c" name="a (3R)-3-hydroxystearoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H35O2SR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Octadec__45__2__45__enoyl__45__ACPs_c" id="M_Octadec__45__2__45__enoyl__45__ACPs_c" name="a trans-octadec-2-enoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C18H33OSR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CCCCCCCCCCCCCCC\C=C\C(=O)S[*]</p>
          </body>
        </notes>
      </species>
      <species metaid="M_CPD__45__14928_c" id="M_CPD__45__14928_c" name="phytenoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H68N7O17P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1056.004</p>
            <p>smiles: CC(C)CCC[C@@H](C)CCC[C@@H](C)CCC\C(C)=C\C(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
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      <species metaid="M_2__45__Me__45__Branched__45__234__45__Sat__45__Fatty__45__Acyl__45__CoA_c" id="M_2__45__Me__45__Branched__45__234__45__Sat__45__Fatty__45__Acyl__45__CoA_c" name="a 2-methyl branched 2,3,4-saturated fatty acyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C25H37N7O17P3SR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CC(C[*])C(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 297.4964</p>
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            <p>inchikey: PAHGJZDQXIOYTH-UHFFFAOYSA-M</p>
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            <rdf:Description rdf:about="#M_PRISTANATE_c">
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1043.993</p>
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      <species metaid="M_PYRROLINE__45__HYDROXY__45__CARBOXYLATE_c" id="M_PYRROLINE__45__HYDROXY__45__CARBOXYLATE_c" name="(3R,5S)-1-pyrroline-3-hydroxy-5-carboxylate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H6NO3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 128.1066</p>
            <p>smiles: O[C@@H]1C[C@H](N=C1)C([O-])=O</p>
            <p>inchikey: WFOFKRKDDKGRIK-DMTCNVIQSA-M</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 627.343</p>
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      <species metaid="M_SULFOQUINOVOSYLDIACYLGLYCEROL_c" id="M_SULFOQUINOVOSYLDIACYLGLYCEROL_c" name="an &amp;alpha;-sulfoquinovosyl diacylglycerol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C11H15O12SR2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: O[C@H]1[C@H](O)[C@@H](CS([O-])(=O)=O)O[C@H](OC[C@@H](COC([*])=O)OC([*])=O)[C@@H]1O</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 540.9044</p>
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            <p>inchikey: BIWLELKAFXRPDE-ZURBLSRNSA-N</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 782.5276</p>
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      <species metaid="M_FADH2_c" id="M_FADH2_c" name="FADH2" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C27H33N9O15P2">
        <notes>
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            <p>mass: 785.5508</p>
            <p>smiles: Cc1cc2Nc3c([nH]c(=O)[nH]c3=O)N(C[C@H](O)[C@H](O)[C@H](O)COP([O-])(=O)OP([O-])(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n3cnc4c(N)ncnc34)c2cc1C</p>
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      <species metaid="M_3__45__SULFINYL__45__PYRUVATE_c" id="M_3__45__SULFINYL__45__PYRUVATE_c" name="3-sulfinopyruvate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H2O5S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 150.111</p>
            <p>smiles: [O-]C(=O)C(=O)CS([O-])=O</p>
            <p>inchikey: JXYLQEMXCAAMOL-UHFFFAOYSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_3__45__SULFINYL__45__PYRUVATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C3H4O5S/c4-2(3(5)6)1-9(7)8/h1H2,(H,5,6)(H,7,8)/p-2"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_DMPBQ_c" id="M_DMPBQ_c" name="2,3-dimethyl-6-phytyl-1,4-benzoquinol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H48O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 416.6795</p>
            <p>smiles: CC(C)CCC[C@@H](C)CCC[C@@H](C)CCC\C(C)=C\Cc1cc(O)c(C)c(C)c1O</p>
            <p>inchikey: SUFZKUBNOVDJRR-WGEODTKDSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_DMPBQ_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C28H48O2/c1-20(2)11-8-12-21(3)13-9-14-22(4)15-10-16-23(5)17-18-26-19-27(29)24(6)25(7)28(26)30/h17,19-22,29-30H,8-16,18H2,1-7H3/b23-17+/t21-,22-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_DELTA__45__TOCOPHEROL_c" id="M_DELTA__45__TOCOPHEROL_c" name="&amp;delta;-tocopherol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H46O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 402.6529</p>
            <p>smiles: CC(C)CCC[C@@H](C)CCC[C@@H](C)CCC[C@]1(C)CCc2cc(O)cc(C)c2O1</p>
            <p>inchikey: GZIFEOYASATJEH-VHFRWLAGSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_DELTA__45__TOCOPHEROL_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C27H46O2/c1-20(2)10-7-11-21(3)12-8-13-22(4)14-9-16-27(6)17-15-24-19-25(28)18-23(5)26(24)29-27/h18-22,28H,7-17H2,1-6H3/t21-,22-,27-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_BETA__45__TOCOPHEROL_c" id="M_BETA__45__TOCOPHEROL_c" name="&amp;beta;-tocopherol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H48O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 416.6795</p>
            <p>smiles: CC(C)CCC[C@@H](C)CCC[C@@H](C)CCC[C@]1(C)CCc2c(C)c(O)cc(C)c2O1</p>
            <p>inchikey: WGVKWNUPNGFDFJ-DQCZWYHMSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_BETA__45__TOCOPHEROL_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C28H48O2/c1-20(2)11-8-12-21(3)13-9-14-22(4)15-10-17-28(7)18-16-25-24(6)26(29)19-23(5)27(25)30-28/h19-22,29H,8-18H2,1-7H3/t21-,22-,28-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_FORMALDEHYDE_c" id="M_FORMALDEHYDE_c" name="formaldehyde" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CH2O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 30.026</p>
            <p>smiles: [H]C([H])=O</p>
            <p>inchikey: WSFSSNUMVMOOMR-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_FORMALDEHYDE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/CH2O/c1-2/h1H2"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_MALONATE__45__S__45__ALD_c" id="M_MALONATE__45__S__45__ALD_c" name="3-oxopropanoate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H3O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 87.0547</p>
            <p>smiles: [H]C(=O)CC([O-])=O</p>
            <p>inchikey: OAKURXIZZOAYBC-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_MALONATE__45__S__45__ALD_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C3H4O3/c4-2-1-3(5)6/h2H,1H2,(H,5,6)/p-1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_L__45__1__45__GLYCEROPHOSPHORYLETHANOL__45__AMINE_c" id="M_L__45__1__45__GLYCEROPHOSPHORYLETHANOL__45__AMINE_c" name="sn-glycero-3-phosphoethanolamine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H14NO6P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 215.1415</p>
            <p>smiles: [H][C@](O)(CO)COP([O-])(=O)OCC[NH3+]</p>
            <p>inchikey: JZNWSCPGTDBMEW-YFKPBYRVSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_L__45__1__45__GLYCEROPHOSPHORYLETHANOL__45__AMINE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C5H14NO6P/c6-1-2-11-13(9,10)12-4-5(8)3-7/h5,7-8H,1-4,6H2,(H,9,10)/t5-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_ARG__45__tRNAs_c" id="M_ARG__45__tRNAs_c" name="a tRNAarg" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Charged__45__ARG__45__tRNAs_c" id="M_Charged__45__ARG__45__tRNAs_c" name="an L-arginyl-[tRNAarg]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_D__45__Amino__45__Acids_c" id="M_D__45__Amino__45__Acids_c" name="a D-amino acid" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H4NO2R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [NH3+][C@H]([*])C([O-])=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_D__45__aminoacyl__45__tRNAs_c" id="M_D__45__aminoacyl__45__tRNAs_c" name="a D-aminoacyl-[tRNA]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Protein__45__N__45__terminal__45__L__45__Arginine_c" id="M_Protein__45__N__45__terminal__45__L__45__Arginine_c" name="a [protein] N-terminal L-arginine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C6H15N4OR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: NC(=[NH2+])NCCC[C@H]([NH3+])C(*)=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_4__45__HYDROXY__45__L__45__PROLINE_c" id="M_4__45__HYDROXY__45__L__45__PROLINE_c" name="trans-4-hydroxy-L-proline" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9NO3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 131.1299</p>
            <p>smiles: O[C@H]1C[NH2+][C@@H](C1)C([O-])=O</p>
            <p>inchikey: PMMYEEVYMWASQN-DMTCNVIQSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_4__45__HYDROXY__45__L__45__PROLINE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C5H9NO3/c7-3-1-4(5(8)9)6-2-3/h3-4,6-7H,1-2H2,(H,8,9)/t3-,4+/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__14053_c" id="M_CPD__45__14053_c" name="L-erythro-5,6,7,8-tetrahydrobiopterin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H15N5O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 241.2471</p>
            <p>smiles: C[C@H](O)[C@H](O)C1CNc2nc(N)[nH]c(=O)c2N1</p>
            <p>inchikey: FNKQXYHWGSIFBK-BYAPIUGTSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__14053_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_GLC__45__6__45__P_c" id="M_GLC__45__6__45__P_c" name="&amp;beta;-D-glucose 6-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 258.121</p>
            <p>smiles: O[C@@H]1O[C@H](COP([O-])([O-])=O)[C@@H](O)[C@H](O)[C@H]1O</p>
            <p>inchikey: NBSCHQHZLSJFNQ-VFUOTHLCSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_GLC__45__6__45__P_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C6H13O9P/c7-3-2(1-14-16(11,12)13)15-6(10)5(9)4(3)8/h2-10H,1H2,(H2,11,12,13)/p-2/t2-,3-,4+,5-,6-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_NICOTINE_c" id="M_NICOTINE_c" name="(S)-nicotine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C10H15N2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 163.239</p>
            <p>smiles: [H][C@]1(CCC[NH+]1C)c1cccnc1</p>
            <p>inchikey: SNICXCGAKADSCV-JTQLQIEISA-O</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_NICOTINE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C10H14N2/c1-12-7-3-5-10(12)9-4-2-6-11-8-9/h2,4,6,8,10H,3,5,7H2,1H3/p+1/t10-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__2743_c" id="M_CPD__45__2743_c" name="nicotine-1&apos;-N-oxide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H14N2O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 178.231</p>
            <p>smiles: C[N+]1([O-])CCCC1c1cccnc1</p>
            <p>inchikey: RWFBQHICRCUQJJ-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__2743_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C10H14N2O/c1-12(13)7-3-5-10(12)9-4-2-6-11-8-9/h2,4,6,8,10H,3,5,7H2,1H3"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_D__45__ERYTHRO__45__IMIDAZOLE__45__GLYCEROL__45__P_c" id="M_D__45__ERYTHRO__45__IMIDAZOLE__45__GLYCEROL__45__P_c" name="D-erythro-imidazole-glycerol-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H9N2O6P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 236.1203</p>
            <p>smiles: O[C@H](COP([O-])([O-])=O)[C@@H](O)c1c[nH]cn1</p>
            <p>inchikey: HFYBTHCYPKEDQQ-RITPCOANSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_D__45__ERYTHRO__45__IMIDAZOLE__45__GLYCEROL__45__P_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C6H11N2O6P/c9-5(2-14-15(11,12)13)6(10)4-1-7-3-8-4/h1,3,5-6,9-10H,2H2,(H,7,8)(H2,11,12,13)/p-2/t5-,6+/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_AICAR_c" id="M_AICAR_c" name="5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H13N4O8P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 336.1964</p>
            <p>smiles: [H][C@]1(COP([O-])([O-])=O)O[C@]([H])([C@H](O)[C@@H]1O)n1cnc(C(N)=O)c1N</p>
            <p>inchikey: NOTGFIUVDGNKRI-UUOKFMHZSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_AICAR_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C9H15N4O8P/c10-7-4(8(11)16)12-2-13(7)9-6(15)5(14)3(21-9)1-20-22(17,18)19/h2-3,5-6,9,14-15H,1,10H2,(H2,11,16)(H2,17,18,19)/p-2/t3-,5-,6-,9-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_GLN__45__tRNAs_c" id="M_GLN__45__tRNAs_c" name="a tRNAgln" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Charged__45__GLN__45__tRNAs_c" id="M_Charged__45__GLN__45__tRNAs_c" name="an L-glutaminyl-[tRNAgln]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_DTDP__45__D__45__GLUCOSE_c" id="M_DTDP__45__D__45__GLUCOSE_c" name="dTDP-&amp;alpha;-D-glucose" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C16H24N2O16P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 562.3142</p>
            <p>smiles: Cc1cn([C@H]2C[C@H](O)[C@@H](COP([O-])(=O)OP([O-])(=O)O[C@H]3O[C@H](CO)[C@@H](O)[C@H](O)[C@H]3O)O2)c(=O)[nH]c1=O</p>
            <p>inchikey: YSYKRGRSMLTJNL-URARBOGNSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_DTDP__45__D__45__GLUCOSE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C16H26N2O16P2/c1-6-3-18(16(25)17-14(6)24)10-2-7(20)9(31-10)5-30-35(26,27)34-36(28,29)33-15-13(23)12(22)11(21)8(4-19)32-15/h3,7-13,15,19-23H,2,4-5H2,1H3,(H,26,27)(H,28,29)(H,17,24,25)/p-2/t7-,8+,9+,10+,11+,12-,13+,15+/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Phosphorylated__45__pyruvate__45__dehydrogenases_c" id="M_Phosphorylated__45__pyruvate__45__dehydrogenases_c" name="a phosphorylated pyruvate dehydrogenase" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Pyruvate__45__dehydrogenases_c" id="M_Pyruvate__45__dehydrogenases_c" name="a pyruvate dehydrogenase" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Protein__45__L__45__Ser__45__or__45__L__45__Thr__45__P__45__L__45__Pro_c" id="M_Protein__45__L__45__Ser__45__or__45__L__45__Thr__45__P__45__L__45__Pro_c" name="a protein containing a phosphorylated (L-serine/L-threonine)-L-proline motif" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Protein__45__L__45__Ser__45__or__45__L__45__Thr__45__L__45__Pro_c" id="M_Protein__45__L__45__Ser__45__or__45__L__45__Thr__45__L__45__Pro_c" name="a protein containing an (L-serine/L-threonine)-L-proline motif" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Branched__45__chain__45__2__45__keto__45__acid__45__deHase_c" id="M_Branched__45__chain__45__2__45__keto__45__acid__45__deHase_c" name="a branched-chain 2-keto acid dehydrogenase" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Branched__45__chain__45__2__45__keto__45__acid__45__deH__45__P_c" id="M_Branched__45__chain__45__2__45__keto__45__acid__45__deH__45__P_c" name="a phosphorylated branched-chain 2-keto acid dehydrogenase" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Protein__45__Phosphoserines_c" id="M_Protein__45__Phosphoserines_c" name="a protein L-serine phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Mitogen__45__Activated__45__Protein__45__Kinase__45__L__45__Thr_c" id="M_Mitogen__45__Activated__45__Protein__45__Kinase__45__L__45__Thr_c" name="a [mitogen-activated protein kinase]-L-threonine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C4H8NO2R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: C[C@@H](O)[C@H]([NH2+]*)C(*)=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_DIPHTINE_c" id="M_DIPHTINE_c" name="a diphthine-[translation elongation factor 2]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_3__45__carboxy__45__3__45__dimethylammonio__45__propyl__45__L__45__his_c" id="M_3__45__carboxy__45__3__45__dimethylammonio__45__propyl__45__L__45__his_c" name="a 2-[(3S)-3-carboxy-3-(dimethylammonio)propyl]-L-histidine-[translation elongation factor 2]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__18666_c" id="M_CPD__45__18666_c" name="epoxypheophorbide a" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C35H35N4O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 607.6761</p>
            <p>smiles: CCC1=C(C)C2=N\C1=C/c1[nH]c3\C([C-](C(=O)OC)C(=O)c3c1C)=C1/[NH+]=C(/C=C3\NC4(OC24)C(C=C)=C3C)[C@@H](C)[C@@H]1CCC([O-])=O</p>
            <p>inchikey: ZMTPZDVBGYNPLZ-YGOWEZGDSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__18666_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C35H35N4O6/c1-8-18-15(4)29-33-35(45-33)20(9-2)16(5)23(39-35)12-21-14(3)19(10-11-25(40)41)30(36-21)27-28(34(43)44-7)32(42)26-17(6)22(37-31(26)27)13-24(18)38-29/h9,12-14,19,33,37,39H,2,8,10-11H2,1,3-7H3,(H,40,41)/q-1/b23-12-,24-13-,30-27-/t14-,19-,33?,35?/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_2__45__3__45__CARBOXY__45__3__45__METHYLAMMONIOPROPYL__45__L__45___c" id="M_2__45__3__45__CARBOXY__45__3__45__METHYLAMMONIOPROPYL__45__L__45___c" name="a 2-[(3S)-3-carboxy-3-(methylammonio)propyl]-L-histidine-[translation elongation factor 2]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Sphingoids_c" id="M_Sphingoids_c" name="a sphingoid base" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C3H9NO2R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [NH3+][C@@H](CO)[C@H](O)[*]</p>
          </body>
        </notes>
      </species>
      <species metaid="M_Ceramides_c" id="M_Ceramides_c" name="a ceramide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H6NO2R3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: O[C@H]([*])[C@H](C[*])NC([*])=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_CONIFERYL__45__ALCOHOL_c" id="M_CONIFERYL__45__ALCOHOL_c" name="coniferyl alcohol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 180.2005</p>
            <p>smiles: COc1cc(\C=C\CO)ccc1O</p>
            <p>inchikey: JMFRWRFFLBVWSI-NSCUHMNNSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CONIFERYL__45__ALCOHOL_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C10H12O3/c1-13-10-7-8(3-2-6-11)4-5-9(10)12/h2-5,7,11-12H,6H2,1H3/b3-2+"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_L__45__DOPACHROME_c" id="M_L__45__DOPACHROME_c" name="L-dopachrome" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H6NO4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 192.1488</p>
            <p>smiles: [H][C@]1(CC2=CC(=O)C(=O)C=C2N1)C([O-])=O</p>
            <p>inchikey: VJNCICVKUHKIIV-LURJTMIESA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_L__45__DOPACHROME_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C9H7NO4/c11-7-2-4-1-6(9(13)14)10-5(4)3-8(7)12/h2-3,6,10H,1H2,(H,13,14)/p-1/t6-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_DIHYDROXYINDOLE_c" id="M_DIHYDROXYINDOLE_c" name="5,6-dihydroxyindole" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H7NO2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 149.1467</p>
            <p>smiles: Oc1cc2cc[nH]c2cc1O</p>
            <p>inchikey: SGNZYJXNUURYCH-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_DIHYDROXYINDOLE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C8H7NO2/c10-7-3-5-1-2-9-6(5)4-8(7)11/h1-4,9-11H"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__12115_c" id="M_CPD__45__12115_c" name="demethylmenaquinol-8" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C50H72O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 705.1055</p>
            <p>smiles: CC(C)=CCC\C(C)=C\CC\C(C)=C\CC\C(C)=C\CC\C(C)=C\CC\C(C)=C\CC\C(C)=C\CC\C(C)=C\Cc1cc(O)c2ccccc2c1O</p>
            <p>inchikey: FGYPGICSXJEKCG-AENDIINCSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__12115_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C50H72O2/c1-38(2)19-12-20-39(3)21-13-22-40(4)23-14-24-41(5)25-15-26-42(6)27-16-28-43(7)29-17-30-44(8)31-18-32-45(9)35-36-46-37-49(51)47-33-10-11-34-48(47)50(46)52/h10-11,19,21,23,25,27,29,31,33-35,37,51-52H,12-18,20,22,24,26,28,30,32,36H2,1-9H3/b39-21+,40-23+,41-25+,42-27+,43-29+,44-31+,45-35+"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_REDUCED__45__MENAQUINONE_c" id="M_REDUCED__45__MENAQUINONE_c" name="menaquinol-8" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C51H74O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 719.1321</p>
            <p>smiles: CC(C)=CCC\C(C)=C\CC\C(C)=C\CC\C(C)=C\CC\C(C)=C\CC\C(C)=C\CC\C(C)=C\CC\C(C)=C\Cc1c(C)c(O)c2ccccc2c1O</p>
            <p>inchikey: OIEZRVBFVPGODT-WQWYCSGDSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_REDUCED__45__MENAQUINONE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C51H74O2/c1-38(2)20-13-21-39(3)22-14-23-40(4)24-15-25-41(5)26-16-27-42(6)28-17-29-43(7)30-18-31-44(8)32-19-33-45(9)36-37-47-46(10)50(52)48-34-11-12-35-49(48)51(47)53/h11-12,20,22,24,26,28,30,32,34-36,52-53H,13-19,21,23,25,27,29,31,33,37H2,1-10H3/b39-22+,40-24+,41-26+,42-28+,43-30+,44-32+,45-36+"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__18761_c" id="M_CPD__45__18761_c" name="coniferyl alcohol radical" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H11O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 179.1925</p>
            <p>smiles: COC1=C\C(=C/[CH]CO)C=CC1=O</p>
            <p>inchikey: ORAJWSYKRGVTDP-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__18761_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C10H11O3/c1-13-10-7-8(3-2-6-11)4-5-9(10)12/h2-5,7,11H,6H2,1H3"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__12366_c" id="M_CPD__45__12366_c" name="8-oxo-GTP" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O15P3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 535.1503</p>
            <p>smiles: [H][C@]1(COP([O-])(=O)OP([O-])(=O)OP([O-])([O-])=O)O[C@@]([H])(n2c(O)nc3c([O-])nc(=[NH2+])[nH]c23)[C@]([H])(O)[C@]1([H])O</p>
            <p>inchikey: JCHLKIQZUXYLPW-UMMCILCDSA-J</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C10H16N5O15P3/c11-9-13-6-3(7(18)14-9)12-10(19)15(6)8-5(17)4(16)2(28-8)1-27-32(23,24)30-33(25,26)29-31(20,21)22/h2,4-5,8,16-17H,1H2,(H,12,19)(H,23,24)(H,25,26)(H2,20,21,22)(H3,11,13,14,18)/p-4/t2-,4-,5-,8-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD0__45__1905_c" id="M_CPD0__45__1905_c" name="8-oxo-dGTP" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H12N5O14P3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 519.1509</p>
            <p>smiles: Nc1nc2n([C@H]3C[C@H](O)[C@@H](COP([O-])(=O)OP([O-])(=O)OP([O-])([O-])=O)O3)c(=O)[nH]c2c(=O)[nH]1</p>
            <p>inchikey: BUZOGVVQWCXXDP-VPENINKCSA-J</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD0__45__1905_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C10H16N5O14P3/c11-9-13-7-6(8(17)14-9)12-10(18)15(7)5-1-3(16)4(27-5)2-26-31(22,23)29-32(24,25)28-30(19,20)21/h3-5,16H,1-2H2,(H,12,18)(H,22,23)(H,24,25)(H2,19,20,21)(H3,11,13,14,17)/p-4/t3-,4+,5+/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_SINAPALDEHYDE_c" id="M_SINAPALDEHYDE_c" name="sinapaldehyde" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H12O4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 208.2106</p>
            <p>smiles: [H]C(=O)\C=C\c1cc(OC)c(O)c(OC)c1</p>
            <p>inchikey: CDICDSOGTRCHMG-ONEGZZNKSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_SINAPALDEHYDE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C11H12O4/c1-14-9-6-8(4-3-5-12)7-10(15-2)11(9)13/h3-7,13H,1-2H3/b4-3+"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_trans__45__delta2__45__lignoceroyl__45__ACPs_c" id="M_trans__45__delta2__45__lignoceroyl__45__ACPs_c" name="a trans-tetracos-2-enoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_cis__45__delta5__45__3__45__oxo__45__lignoceroyl__45__ACPs_c" id="M_cis__45__delta5__45__3__45__oxo__45__lignoceroyl__45__ACPs_c" name="a cis-delta5-3-oxo-C24:1-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_cis__45__delta5__45__3__45__hydroxylignoceroyl__45__ACPs_c" id="M_cis__45__delta5__45__3__45__hydroxylignoceroyl__45__ACPs_c" name="a cis-delta5-3-hydroxyC24:1-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_cis__45__delta17__45__3__45__oxo__45__C36__45__ACPs_c" id="M_cis__45__delta17__45__3__45__oxo__45__C36__45__ACPs_c" name="a cis-delta17-3-oxo-C36:1-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_cis__45__delta17__45__3__45__hydroxyC36__45__ACPs_c" id="M_cis__45__delta17__45__3__45__hydroxyC36__45__ACPs_c" name="a cis-delta17-3-hydroxyC36:1-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__786_c" id="M_CPD__45__786_c" name="(4Z)-2-oxohept-4-enedioate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C7H6O5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 170.1206</p>
            <p>smiles: [O-]C(=O)CC\C=C/C(=O)C([O-])=O</p>
            <p>inchikey: HYVSZVZMTYIHKF-IWQZZHSRSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__786_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C7H8O5/c8-5(7(11)12)3-1-2-4-6(9)10/h1,3H,2,4H2,(H,9,10)(H,11,12)/p-2/b3-1-"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__787_c" id="M_CPD__45__787_c" name="(2Z,4Z)-2-hydroxyhepta-2,4-dienedioate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C7H6O5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 170.1206</p>
            <p>smiles: O\C(=C/C=C\CC([O-])=O)C([O-])=O</p>
            <p>inchikey: ZBCBETMBSDTINL-NWJCXACMSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__787_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C7H8O5/c8-5(7(11)12)3-1-2-4-6(9)10/h1-3,8H,4H2,(H,9,10)(H,11,12)/p-2/b2-1-,5-3-"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD3DJ__45__11366_c" id="M_CPD3DJ__45__11366_c" name="sphingosine 1-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H37NO5P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 378.4644</p>
            <p>smiles: CCCCCCCCCCCCC\C=C\[C@@H](O)[C@@H]([NH3+])COP([O-])([O-])=O</p>
            <p>inchikey: DUYSYHSSBDVJSM-KRWOKUGFSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD3DJ__45__11366_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C18H38NO5P/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-18(20)17(19)16-24-25(21,22)23/h14-15,17-18,20H,2-13,16,19H2,1H3,(H2,21,22,23)/p-1/b15-14+/t17-,18+/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__292_c" id="M_CPD__45__292_c" name="(2E)-hexadecenal" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H30O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 238.4088</p>
            <p>smiles: [H]C(=O)\C=C\CCCCCCCCCCCCC</p>
            <p>inchikey: KLJFYXOVGVXZKT-CCEZHUSRSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__292_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C16H30O/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17/h14-16H,2-13H2,1H3/b15-14+"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
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        </annotation>
      </species>
      <species metaid="M_2__45__Acylglycero__45__Phosphocholines_c" id="M_2__45__Acylglycero__45__Phosphocholines_c" name="a 2-acyl 1-lyso-phosphatidylcholine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H19NO7PR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: C[N+](C)(C)CCOP([O-])(=O)OC[C@@H](CO)OC([*])=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_PHOSPHORYL__45__CHOLINE_c" id="M_PHOSPHORYL__45__CHOLINE_c" name="phosphocholine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H13NO4P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 182.1353</p>
            <p>smiles: C[N+](C)(C)CCOP([O-])([O-])=O</p>
            <p>inchikey: YHHSONZFOIEMCP-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_PHOSPHORYL__45__CHOLINE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C5H14NO4P/c1-6(2,3)4-5-10-11(7,8)9/h4-5H2,1-3H3,(H-,7,8,9)/p-1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
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          </rdf:RDF>
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      </species>
      <species metaid="M_CPD__45__641_c" id="M_CPD__45__641_c" name="(R)-mevalonate diphosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C6H10O10P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 304.0873</p>
            <p>smiles: C[C@@](O)(CCOP([O-])(=O)OP([O-])([O-])=O)CC([O-])=O</p>
            <p>inchikey: SIGQQUBJQXSAMW-ZCFIWIBFSA-J</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__641_c">
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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      </species>
      <species metaid="M_URATE_c" id="M_URATE_c" name="urate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4N4O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 168.1103</p>
            <p>smiles: O=c1[nH]c2[nH]c(=O)[nH]c(=O)c2[nH]1</p>
            <p>inchikey: LEHOTFFKMJEONL-UHFFFAOYSA-N</p>
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        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_URATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C5H4N4O3/c10-3-1-2(7-4(11)6-1)8-5(12)9-3/h(H4,6,7,8,9,10,11,12)"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
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          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__9646_c" id="M_CPD__45__9646_c" name="di-trans,octa-cis-undecaprenyl phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C55H89O4P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 845.2676</p>
            <p>smiles: CC(C)=CCC\C(C)=C\CC\C(C)=C\CC\C(C)=C/CC\C(C)=C/CC\C(C)=C/CC\C(C)=C/CC\C(C)=C/CC\C(C)=C/CC\C(C)=C/CC\C(C)=C/COP([O-])([O-])=O</p>
            <p>inchikey: UFPHFKCTOZIAFY-NTDVEAECSA-L</p>
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        </notes>
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          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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        </annotation>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1146.9141</p>
            <p>smiles: C[C@@H](NC(=O)[C@@H](C)NC(=O)[C@H](CCCC[NH3+])NC(=O)CC[C@@H](NC(=O)[C@H](C)NC(=O)[C@@H](C)O[C@H]1[C@H](O)[C@@H](CO)O[C@H](OP([O-])(=O)OP([O-])(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)n2ccc(=O)[nH]c2=O)[C@@H]1NC(C)=O)C([O-])=O)C([O-])=O</p>
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        <notes>
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            <p>mass: 1670.0153</p>
            <p>smiles: C[C@@H](NC(=O)[C@@H](C)NC(=O)[C@H](CCCC[NH3+])NC(=O)CC[C@@H](NC(=O)[C@H](C)NC(=O)[C@@H](C)O[C@H]1[C@H](O)[C@@H](CO)O[C@H](OP([O-])(=O)OP([O-])(=O)OC\C=C(\C)CC\C=C(\C)CC\C=C(\C)CC\C=C(\C)CC\C=C(\C)CC\C=C(\C)CC\C=C(\C)CC\C=C(\C)CC\C=C(/C)CC\C=C(/C)CCC=C(C)C)[C@@H]1NC(C)=O)C([O-])=O)C([O-])=O</p>
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        <notes>
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            <p>mass: 128.084</p>
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            <p>inchikey: LVHBHZANLOWSRM-UHFFFAOYSA-L</p>
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        <notes>
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            <p>mass: 874.581</p>
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        <notes>
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            <p>mass: 924.2401</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 182.1718</p>
            <p>smiles: OC[C@H](O)[C@@H](O)[C@H](O)[C@@H](O)CO</p>
            <p>inchikey: FBPFZTCFMRRESA-UNTFVMJOSA-N</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 89.0705</p>
            <p>smiles: C[C@H](O)C([O-])=O</p>
            <p>inchikey: JVTAAEKCZFNVCJ-REOHCLBHSA-M</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 917.754</p>
            <p>smiles: CCCCCCCCCC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 903.684</p>
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            <p>inchikey: WPIVBCGRGVNDDT-CECATXLMSA-J</p>
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      <species metaid="M_HEXANOYL__45__COA_c" id="M_HEXANOYL__45__COA_c" name="hexanoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C27H42N7O17P3S">
        <notes>
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            <p>mass: 861.648</p>
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        <notes>
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            <p>mass: 165.2096</p>
            <p>smiles: CC(=C)C1CCC(=CC1)C([O-])=O</p>
            <p>inchikey: CDSMSBUVCWHORP-UHFFFAOYSA-M</p>
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        </notes>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 150.2176</p>
            <p>smiles: [H]C(=O)C1=CCC(CC1)C(C)=C</p>
            <p>inchikey: RUMOYJJNUMEFDD-UHFFFAOYSA-N</p>
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      <species metaid="M_MALTOTETRAOSE_c" id="M_MALTOTETRAOSE_c" name="maltotetraose" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H42O21">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 666.5777</p>
            <p>smiles: OC[C@H]1O[C@H](O[C@H]2[C@H](O)[C@@H](O)[C@@H](O[C@H]3[C@H](O)[C@@H](O)[C@@H](O[C@H]4[C@H](O)[C@@H](O)[C@@H](O)O[C@@H]4CO)O[C@@H]3CO)O[C@@H]2CO)[C@H](O)[C@@H](O)[C@@H]1O</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 828.7183</p>
            <p>smiles: OC[C@@H](O)[C@@H](O[C@H]1O[C@H](CO)[C@@H](O[C@H]2O[C@H](CO)[C@@H](O[C@H]3O[C@H](CO)[C@@H](O[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@H]4O)[C@H](O)[C@H]3O)[C@H](O)[C@H]2O)[C@H](O)[C@H]1O)[C@H](O)[C@@H](O)C=O</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 990.8589</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1152.9995</p>
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        <notes>
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            <p>mass: 503.1515</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: C[C@@H](OP([O-])([O-])=O)[C@H]([NH2+]*)C(*)=O</p>
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        </notes>
      </species>
      <species metaid="M_Protein__45__phospho__45__L__45__histidines_c" id="M_Protein__45__phospho__45__L__45__histidines_c" name="a [protein]-N-phospho-L-histidine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
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      <species metaid="M_MANNOSE__45__1P_c" id="M_MANNOSE__45__1P_c" name="&amp;alpha;-D-mannose 1-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 258.121</p>
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            <p>inchikey: HXXFSFRBOHSIMQ-RWOPYEJCSA-L</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 445.2368</p>
            <p>smiles: Nc1ccn([C@@H]2O[C@H](COP([O-])(=O)OP([O-])(=O)OCC[NH3+])[C@@H](O)[C@H]2O)c(=O)n1</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 214.1115</p>
            <p>smiles: C[C@](O)(CO)[C@H](O)COP([O-])([O-])=O</p>
            <p>inchikey: XMWHRVNVKDKBRG-UHNVWZDZSA-L</p>
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            <p>mass: 258.121</p>
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            <p>inchikey: HXXFSFRBOHSIMQ-FPRJBGLDSA-L</p>
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      <species metaid="M_D__45__GALACTONO__45__1__45__4__45__LACTONE_c" id="M_D__45__GALACTONO__45__1__45__4__45__LACTONE_c" name="D-galactono-1,4-lactone" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 178.14</p>
            <p>smiles: [H][C@]1(OC(=O)[C@H](O)[C@H]1O)[C@H](O)CO</p>
            <p>inchikey: SXZYCXMUPBBULW-AIHAYLRMSA-N</p>
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        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_D__45__GALACTONO__45__1__45__4__45__LACTONE_c">
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      <species metaid="M_D__45__GALACTONATE_c" id="M_D__45__GALACTONATE_c" name="D-galactonate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O7">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 195.1479</p>
            <p>smiles: OC[C@@H](O)[C@H](O)[C@H](O)[C@@H](O)C([O-])=O</p>
            <p>inchikey: RGHNJXZEOKUKBD-MGCNEYSASA-M</p>
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        </notes>
        <annotation>
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      <species metaid="M_CPD__45__7005_c" id="M_CPD__45__7005_c" name="geranylgeranyl chlorophyll a" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C55H66MgN4O5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 887.441</p>
            <p>smiles: CCC1=C(C)C2=Cc3c(C=C)c(C)c4C=C5[C@@H](C)[C@H](CCC(=O)OC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CCC=C(C)C)C6=[N+]5[Mg--]5(n34)n3c(=CC1=[N+]25)c(C)c1C(=O)[C@H](C(=O)OC)C6=c31</p>
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        </notes>
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                </rdf:Bag>
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      <species metaid="M_CHLOROPHYLL__45__A_c" id="M_CHLOROPHYLL__45__A_c" name="chlorophyll a" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C55H71MgN4O5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 892.482</p>
            <p>smiles: CCC1=C(C)C2=Cc3c(C=C)c(C)c4C=C5[C@@H](C)[C@H](CCC(=O)OC\C=C(/C)CCC[C@H](C)CCC[C@H](C)CCCC(C)C)C6=[N+]5[Mg--]5(n34)n3c(=CC1=[N+]25)c(C)c1C(=O)[C-](C(=O)OC)C6=c31</p>
            <p>inchikey: VSRAJQZEEBBURZ-ONWAGYJKSA-M</p>
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        </notes>
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            <rdf:Description rdf:about="#M_CHLOROPHYLL__45__A_c">
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                </rdf:Bag>
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      <species metaid="M_CPD__45__5662_c" id="M_CPD__45__5662_c" name="9-mercaptodethiobiotin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H17N2O3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 245.319</p>
            <p>smiles: [O-]C(=O)CCCCC[C@H]1NC(=O)N[C@H]1CS</p>
            <p>inchikey: ZARFDBYKHCOTRH-SFYZADRCSA-M</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_CPD__45__5662_c">
              <bqbiol:isVersionOf>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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      </species>
      <species metaid="M_Oxidized__45__2Fe__45__2S__45__Ferredoxins_c" id="M_Oxidized__45__2Fe__45__2S__45__Ferredoxins_c" name="an oxidized [2Fe-2S] ferredoxin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_AGMATHINE_c" id="M_AGMATHINE_c" name="agmatine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C5H16N4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 132.2062</p>
            <p>smiles: NC(=[NH2+])NCCCC[NH3+]</p>
            <p>inchikey: QYPPJABKJHAVHS-UHFFFAOYSA-P</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_AGMATHINE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C5H14N4/c6-3-1-2-4-9-5(7)8/h1-4,6H2,(H4,7,8,9)/p+2"/>
                </rdf:Bag>
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        </annotation>
      </species>
      <species metaid="M_Reduced__45__2Fe__45__2S__45__Ferredoxins_c" id="M_Reduced__45__2Fe__45__2S__45__Ferredoxins_c" name="a reduced [2Fe-2S] ferredoxin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_D__45__3__45__HYDROXYACYL__45__COA_c" id="M_D__45__3__45__HYDROXYACYL__45__COA_c" name="a (3R)-3-hydroxyacyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C24H35N7O18P3SR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12)[C@@H](O)C(=O)NCCC(=O)NCCSC(=O)C[C@H](O)[*]</p>
          </body>
        </notes>
      </species>
      <species metaid="M_CIS__45__D2__45__ENOYL__45__COA_c" id="M_CIS__45__D2__45__ENOYL__45__COA_c" name="a cis-2-enoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C24H33N7O17P3SR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12)[C@@H](O)C(=O)NCCC(=O)NCCSC(=O)\C=C/[*]</p>
          </body>
        </notes>
      </species>
      <species metaid="M_CAAX__45__proteins_c" id="M_CAAX__45__proteins_c" name="a protein that ends with a CAAX sequence" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Farnesylated__45__CAAX__45__proteins_c" id="M_Farnesylated__45__CAAX__45__proteins_c" name="a farnesylated protein that ends with a CAAX sequence" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_5__45__HYDROXY__45__CONIFERALDEHYDE_c" id="M_5__45__HYDROXY__45__CONIFERALDEHYDE_c" name="5-hydroxy-coniferaldehyde" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H10O4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 194.184</p>
            <p>smiles: COc1cc(\C=C\C=O)cc(O)c1O</p>
            <p>inchikey: IEHPLRVWOHZKCS-NSCUHMNNSA-N</p>
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        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_5__45__HYDROXY__45__CONIFERALDEHYDE_c">
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      <species metaid="M_3__45__Ketoglutaryl__45__ACP__45__methyl__45__ester_c" id="M_3__45__Ketoglutaryl__45__ACP__45__methyl__45__ester_c" name="a 3-oxo-glutaryl-[acp] methyl ester" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Malonyl__45__acp__45__methyl__45__ester_c" id="M_Malonyl__45__acp__45__methyl__45__ester_c" name="a malonyl-[acp] methyl ester" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      </species>
      <species metaid="M_3__45__Hydroxyglutaryl__45__ACP__45__methyl__45__ester_c" id="M_3__45__Hydroxyglutaryl__45__ACP__45__methyl__45__ester_c" name="a (3R)-3-hydroxyglutaryl-[acp] methyl ester" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Enoylglutaryl__45__ACP__45__methyl__45__esters_c" id="M_Enoylglutaryl__45__ACP__45__methyl__45__esters_c" name="an enoylglutaryl-[acp] methyl ester" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Glutaryl__45__ACP__45__methyl__45__esters_c" id="M_Glutaryl__45__ACP__45__methyl__45__esters_c" name="a glutaryl-[acp] methyl ester" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_3__45__Ketopimeloyl__45__ACP__45__methyl__45__esters_c" id="M_3__45__Ketopimeloyl__45__ACP__45__methyl__45__esters_c" name="a 3-oxo-pimeloyl-[acp] methyl ester" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_3__45__hydroxypimeloyl__45__ACP__45__methyl__45__esters_c" id="M_3__45__hydroxypimeloyl__45__ACP__45__methyl__45__esters_c" name="a (3R)-3-hydroxypimeloyl-[acp] methyl ester" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      </species>
      <species metaid="M_SPHINGOSINE_c" id="M_SPHINGOSINE_c" name="sphingosine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H38NO2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 300.4993</p>
            <p>smiles: CCCCCCCCCCCCC\C=C\[C@@H](O)[C@@H]([NH3+])CO</p>
            <p>inchikey: WWUZIQQURGPMPG-KRWOKUGFSA-O</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_SPHINGOSINE_c">
              <bqbiol:isVersionOf>
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              </bqbiol:isVersionOf>
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      <species metaid="M_HYDROXYMETHYLBILANE_c" id="M_HYDROXYMETHYLBILANE_c" name="preuroporphyrinogen" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C40H38N4O17">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 846.7507</p>
            <p>smiles: OCc1[nH]c(Cc2[nH]c(Cc3[nH]c(Cc4[nH]cc(CCC([O-])=O)c4CC([O-])=O)c(CCC([O-])=O)c3CC([O-])=O)c(CCC([O-])=O)c2CC([O-])=O)c(CCC([O-])=O)c1CC([O-])=O</p>
            <p>inchikey: WDFJYRZCZIUBPR-UHFFFAOYSA-F</p>
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            <rdf:Description rdf:about="#M_HYDROXYMETHYLBILANE_c">
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                </rdf:Bag>
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      </species>
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        <notes>
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            <p>mass: 842.762</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 137.1133</p>
            <p>smiles: Oc1ccc(cc1)C([O-])=O</p>
            <p>inchikey: FJKROLUGYXJWQN-UHFFFAOYSA-M</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 583.655</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 545.8155</p>
            <p>smiles: CC(C)=CCC\C(C)=C\CC\C(C)=C\CC\C(C)=C\CC\C(C)=C\CC\C(C)=C\Cc1cc(ccc1O)C([O-])=O</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 950.677</p>
            <p>smiles: CC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12)[C@@H](O)C(=O)NCCC(=O)NCCSC(=O)C(\CC([O-])=O)=C\c1ccccc1</p>
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        </notes>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 968.692</p>
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            <p>inchikey: DVSQFPLMOLPRDU-ACXVELPGSA-I</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 966.676</p>
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      <species metaid="M_DEOXYXYLULOSE__45__5P_c" id="M_DEOXYXYLULOSE__45__5P_c" name="1-deoxy-D-xylulose 5-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O7P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 212.0956</p>
            <p>smiles: CC(=O)[C@@H](O)[C@H](O)COP([O-])([O-])=O</p>
            <p>inchikey: AJPADPZSRRUGHI-RFZPGFLSSA-L</p>
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      <species metaid="M_2__45__3__45__CARBOXY__45__3__45__AMINOPROPYL__45__L__45__HISTIDINE_c" id="M_2__45__3__45__CARBOXY__45__3__45__AMINOPROPYL__45__L__45__HISTIDINE_c" name="a 2-[(3S)-3-amino-3-carboxypropyl]-L-histidine-[translation elongation factor 2]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H14N4O3R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [NH3+][C@@H](CCc1ncc(C[C@H](N-*)C(-*)=O)[nH]1)C([O-])=O</p>
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        </notes>
      </species>
      <species metaid="M_S__45__CD__45__Apo__45__SP__45__Complex_c" id="M_S__45__CD__45__Apo__45__SP__45__Complex_c" name="an S-sulfanyl-[cysteine desulfurase]-[disordered-form scaffold protein] complex" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      <species metaid="M_D__45__form__45__FeS__45__Cluster__45__Scaffold__45__Proteins_c" id="M_D__45__form__45__FeS__45__Cluster__45__Scaffold__45__Proteins_c" name="a [disordered-form [Fe-S] cluster scaffold protein]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CD__45__S__45__SP__45__Complex_c" id="M_CD__45__S__45__SP__45__Complex_c" name="a [cysteine desulfurase]-S-sulfanyl-[disordered-form scaffold protein] complex" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      <species metaid="M_S__45__CD__45__S__45__SP__45__Complex_c" id="M_S__45__CD__45__S__45__SP__45__Complex_c" name="an S-sulfanyl-[cysteine desulfurase]-S-sulfanyl-[disordered-form scaffold protein] complex" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
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          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      <species metaid="M_CPD__45__488_c" id="M_CPD__45__488_c" name="&amp;beta;-L-fucose 1-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O8P">
        <notes>
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            <p>mass: 242.1216</p>
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      <species metaid="M_4__45__CYTIDINE__45__5__45__DIPHOSPHO__45__2__45__C_c" id="M_4__45__CYTIDINE__45__5__45__DIPHOSPHO__45__2__45__C_c" name="4-(cytidine 5&apos;-diphospho)-2-C-methyl-D-erythritol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C14H23N3O14P2">
        <notes>
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            <p>mass: 519.2927</p>
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                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C14H25N3O14P2/c1-14(23,6-18)8(19)5-29-33(26,27)31-32(24,25)28-4-7-10(20)11(21)12(30-7)17-3-2-9(15)16-13(17)22/h2-3,7-8,10-12,18-21,23H,4-6H2,1H3,(H,24,25)(H,26,27)(H2,15,16,22)/p-2/t7-,8-,10-,11-,12-,14+/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_ssRNAs_c" id="M_ssRNAs_c" name="a single-stranded RNA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_III2__45__a__45__Fucosyllactotetraosylceramides_c" id="M_III2__45__a__45__Fucosyllactotetraosylceramides_c" name="III2-&amp;alpha;-fucosyllactotetraosylceramide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Lactotetraosylceramides_c" id="M_Lactotetraosylceramides_c" name="&amp;beta;-D-galactosyl-(1&amp;rarr;4)-N-acetyl-&amp;beta;-D-glucosaminyl-(1&amp;rarr;3)-&amp;beta;-D-galactosyl-(1&amp;rarr;4)-&amp;beta;-D-glucosyl-(1&amp;harr;1)-ceramide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/>
      <species metaid="M_CPD__45__8594_c" id="M_CPD__45__8594_c" name="Lewis x epitope" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H34NO14R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: C[C@@H]1O[C@@H](O[C@@H]2[C@@H](NC(C)=O)C(-*)O[C@H](CO)[C@H]2O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O)[C@H]2O)[C@@H](O)[C@H](O)[C@@H]1O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_Cerebrosides_c" id="M_Cerebrosides_c" name="a cerebroside" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_GALACTOSYLCERAMIDE__45__SULFATE_c" id="M_GALACTOSYLCERAMIDE__45__SULFATE_c" name="a sulfatide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H45NO11SR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CCCCCCCCCCCCC\C=C\[C@@H](O)[C@H](CO[C@@H]1O[C@H](CO)[C@H](O)[C@H](OS([O-])(=O)=O)[C@H]1O)NC([*])=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_Pimeloyl__45__ACP__45__methyl__45__esters_c" id="M_Pimeloyl__45__ACP__45__methyl__45__esters_c" name="a pimeloyl-[acp] methyl ester" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H13O3RS">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Enoylpimeloyl__45__ACP__45__methyl__45__esters_c" id="M_Enoylpimeloyl__45__ACP__45__methyl__45__esters_c" name="an enoylpimeloyl-[acp] methyl ester" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Pimeloyl__45__ACPs_c" id="M_Pimeloyl__45__ACPs_c" name="a pimeloyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H11O3RS">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD1F__45__139_c" id="M_CPD1F__45__139_c" name="gibberellin A1" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H23O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 347.3829</p>
            <p>smiles: [H][C@@]12CC[C@]3(O)C[C@]1(CC3=C)[C@@H](C([O-])=O)[C@]1([H])[C@@]3(C)[C@@H](O)CC[C@@]21OC3=O</p>
            <p>inchikey: JLJLRLWOEMWYQK-OBDJNFEBSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD1F__45__139_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C19H24O6/c1-9-7-17-8-18(9,24)5-3-10(17)19-6-4-11(20)16(2,15(23)25-19)13(19)12(17)14(21)22/h10-13,20,24H,1,3-8H2,2H3,(H,21,22)/p-1/t10-,11+,12-,13-,16-,17+,18+,19-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__204_c" id="M_CPD__45__204_c" name="gibberellin A8" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H23O7">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 363.3823</p>
            <p>smiles: [H][C@@]12CC[C@]3(O)C[C@]1(CC3=C)[C@@H](C([O-])=O)[C@]1([H])[C@@]3(C)[C@@H](O)[C@@H](O)C[C@@]21OC3=O</p>
            <p>inchikey: WZRRJZYYGOOHRC-UQJCXHNCSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__204_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C19H24O7/c1-8-5-17-7-18(8,25)4-3-10(17)19-6-9(20)13(21)16(2,15(24)26-19)12(19)11(17)14(22)23/h9-13,20-21,25H,1,3-7H2,2H3,(H,22,23)/p-1/t9-,10+,11+,12+,13-,16-,17-,18-,19+/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
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          </rdf:RDF>
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      <species metaid="M_CPD__45__170_c" id="M_CPD__45__170_c" name="stachyose" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C24H42O21">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 666.5777</p>
            <p>smiles: OC[C@H]1O[C@@](CO)(O[C@H]2O[C@H](CO[C@H]3O[C@H](CO[C@H]4O[C@H](CO)[C@H](O)[C@H](O)[C@H]4O)[C@H](O)[C@H](O)[C@H]3O)[C@@H](O)[C@H](O)[C@H]2O)[C@@H](O)[C@@H]1O</p>
            <p>inchikey: UQZIYBXSHAGNOE-XNSRJBNMSA-N</p>
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        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__170_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C24H42O21/c25-1-6-10(28)14(32)17(35)21(41-6)39-3-8-11(29)15(33)18(36)22(42-8)40-4-9-12(30)16(34)19(37)23(43-9)45-24(5-27)20(38)13(31)7(2-26)44-24/h6-23,25-38H,1-5H2/t6-,7-,8-,9-,10+,11+,12-,13-,14+,15+,16+,17-,18-,19-,20+,21+,22+,23-,24+/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__19014_c" id="M_CPD__45__19014_c" name="2-hydroxyisobutanoate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H7O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 103.0971</p>
            <p>smiles: CC(C)(O)C([O-])=O</p>
            <p>inchikey: BWLBGMIXKSTLSX-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__19014_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C4H8O3/c1-4(2,7)3(5)6/h7H,1-2H3,(H,5,6)/p-1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__19042_c" id="M_CPD__45__19042_c" name="2-hydroxyisobutyramide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 103.1198</p>
            <p>smiles: CC(C)(O)C(N)=O</p>
            <p>inchikey: DRYMMXUBDRJPDS-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__19042_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C4H9NO2/c1-4(2,7)3(5)6/h7H,1-2H3,(H2,5,6)"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__19065_c" id="M_CPD__45__19065_c" name="1,1-dihydroxypropan-2-one" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 90.0779</p>
            <p>smiles: CC(=O)C(O)O</p>
            <p>inchikey: UOQFZGVGGMHGEE-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__19065_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C3H6O3/c1-2(4)3(5)6/h3,5-6H,1H3"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_ACETOL_c" id="M_ACETOL_c" name="acetol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H6O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 74.0785</p>
            <p>smiles: CC(=O)CO</p>
            <p>inchikey: XLSMFKSTNGKWQX-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_ACETOL_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C3H6O2/c1-3(5)2-4/h4H,2H2,1H3"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Protein__45__Lysine__45__Aminocarbinol_c" id="M_Protein__45__Lysine__45__Aminocarbinol_c" name="a [protein]-L-lysine-N-1-hydroxypropan-2-one" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="C9H18N2O3R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CC(=O)C(O)[NH2+]CCCC[C@H]([NH2+]*)C(*)=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_2R__45__3R__45__Dihydroflavonols_c" id="M_2R__45__3R__45__Dihydroflavonols_c" name="a (2R,3R)-dihydroflavonol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H3O3R9">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: O[C@@H]1[C@H](Oc2c(*)c(*)c(*)c(*)c2C1=O)c1c(*)c(*)c(*)c(*)c1*</p>
          </body>
        </notes>
      </species>
      <species metaid="M_CPD__45__11512_c" id="M_CPD__45__11512_c" name="a (2R,3S,4S)-leucoanthocyanidin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H5O3R9">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: OC1C(O)c2c([*])c([*])c([*])c([*])c2OC1c1c([*])c([*])c([*])c([*])c1[*]</p>
          </body>
        </notes>
      </species>
      <species metaid="M_CPD__45__9663_c" id="M_CPD__45__9663_c" name="2-epi-5-epi-valiolone" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H12O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 192.1666</p>
            <p>smiles: OC[C@]1(O)CC(=O)[C@@H](O)[C@@H](O)[C@@H]1O</p>
            <p>inchikey: JCZFNXYQGNLHDQ-MVIOUDGNSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__9663_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C7H12O6/c8-2-7(13)1-3(9)4(10)5(11)6(7)12/h4-6,8,10-13H,1-2H2/t4-,5-,6+,7-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__9699_c" id="M_CPD__45__9699_c" name="hypoglycin A" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H11NO2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 141.1677</p>
            <p>smiles: [H]C1(C[C@H]([NH3+])C([O-])=O)CC1=C</p>
            <p>inchikey: OOJZCXFXPZGUBJ-GDVGLLTNSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__9699_c">
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                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C7H11NO2/c1-4-2-5(4)3-6(8)7(9)10/h5-6H,1-3,8H2,(H,9,10)/t5?,6-/m0/s1"/>
                </rdf:Bag>
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          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__9700_c" id="M_CPD__45__9700_c" name="hypoglycin B" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H17N2O5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 269.2743</p>
            <p>smiles: [H]C1(C[C@H](NC(=O)CC[C@H]([NH3+])C([O-])=O)C([O-])=O)CC1=C</p>
            <p>inchikey: UYDZYCPIQSRXKU-NPPUSCPJSA-M</p>
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        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__9700_c">
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__9852_c" id="M_CPD__45__9852_c" name="3-heptaprenyl-4-hydroxybenzoate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C42H61O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 613.9325</p>
            <p>smiles: CC(C)=CCC\C(C)=C\CC\C(C)=C\CC\C(C)=C\CC\C(C)=C\CC\C(C)=C\CC\C(C)=C\Cc1cc(ccc1O)C([O-])=O</p>
            <p>inchikey: PEMFGDIFKKXFRG-PYHSYOTJSA-M</p>
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        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__9852_c">
              <bqbiol:isVersionOf>
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                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C42H62O3/c1-32(2)15-9-16-33(3)17-10-18-34(4)19-11-20-35(5)21-12-22-36(6)23-13-24-37(7)25-14-26-38(8)27-28-39-31-40(42(44)45)29-30-41(39)43/h15,17,19,21,23,25,27,29-31,43H,9-14,16,18,20,22,24,26,28H2,1-8H3,(H,44,45)/p-1/b33-17+,34-19+,35-21+,36-23+,37-25+,38-27+"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_PYRIDOXINE__45__5P_c" id="M_PYRIDOXINE__45__5P_c" name="pyridoxine 5&apos;-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H10NO6P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 247.143</p>
            <p>smiles: Cc1ncc(COP([O-])([O-])=O)c(CO)c1O</p>
            <p>inchikey: WHOMFKWHIQZTHY-UHFFFAOYSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_PYRIDOXINE__45__5P_c">
              <bqbiol:isVersionOf>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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        </annotation>
      </species>
      <species metaid="M_ALL__45__TRANS__45__HEPTAPRENYL__45__DIPHOSPHATE_c" id="M_ALL__45__TRANS__45__HEPTAPRENYL__45__DIPHOSPHATE_c" name="all-trans-heptaprenyl diphosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C35H57O7P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 651.772</p>
            <p>smiles: CC(C)=CCC\C(C)=C\CC\C(C)=C\CC\C(C)=C\CC\C(C)=C\CC\C(C)=C\CC\C(C)=C\COP([O-])(=O)OP([O-])([O-])=O</p>
            <p>inchikey: LSJLEXWXRKTZAJ-YUIIPXGZSA-K</p>
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        </notes>
        <annotation>
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        </annotation>
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      <species metaid="M_CPD__45__9864_c" id="M_CPD__45__9864_c" name="3-decaprenyl-4-hydroxybenzoate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C57H85O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 818.2835</p>
            <p>smiles: CC(C)=CCC\C(C)=C\CC\C(C)=C\CC\C(C)=C\CC\C(C)=C\CC\C(C)=C\CC\C(C)=C\CC\C(C)=C\CC\C(C)=C\CC\C(C)=C\Cc1cc(ccc1O)C([O-])=O</p>
            <p>inchikey: CMPNJZREBHCPHN-LTNIBBDRSA-M</p>
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        </notes>
        <annotation>
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              <bqbiol:isVersionOf>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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        </annotation>
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      <species metaid="M_PYRIDOXINE_c" id="M_PYRIDOXINE_c" name="pyridoxine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H11NO3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 169.1778</p>
            <p>smiles: Cc1ncc(CO)c(CO)c1O</p>
            <p>inchikey: LXNHXLLTXMVWPM-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_PYRIDOXINE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C8H11NO3/c1-5-8(12)7(4-11)6(3-10)2-9-5/h2,10-12H,3-4H2,1H3"/>
                </rdf:Bag>
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        </annotation>
      </species>
      <species metaid="M_CPD__45__9610_c" id="M_CPD__45__9610_c" name="all-trans-decaprenyl diphosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C50H81O7P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 856.1231</p>
            <p>smiles: CC(C)=CCC\C(C)=C\CC\C(C)=C\CC\C(C)=C\CC\C(C)=C\CC\C(C)=C\CC\C(C)=C\CC\C(C)=C\CC\C(C)=C\CC\C(C)=C\COP([O-])(=O)OP([O-])([O-])=O</p>
            <p>inchikey: FSCYHDCTHRVSKN-CMVHWAPMSA-K</p>
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        </notes>
        <annotation>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_PHOSPHORIBOSYL__45__FORMAMIDO__45__CARBOXAMIDE_c" id="M_PHOSPHORIBOSYL__45__FORMAMIDO__45__CARBOXAMIDE_c" name="5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H13N4O9P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 364.2065</p>
            <p>smiles: [H]C(=O)Nc1c(ncn1[C@@H]1O[C@H](COP([O-])([O-])=O)[C@@H](O)[C@H]1O)C(N)=O</p>
            <p>inchikey: ABCOOORLYAOBOZ-KQYNXXCUSA-L</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_PHOSPHORIBOSYL__45__FORMAMIDO__45__CARBOXAMIDE_c">
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_EPISTEROL_c" id="M_EPISTEROL_c" name="episterol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H46O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 398.6642</p>
            <p>smiles: [H][C@@]1(CC[C@@]2([H])C3=CC[C@@]4([H])C[C@@H](O)CC[C@]4(C)[C@@]3([H])CC[C@]12C)[C@H](C)CCC(=C)C(C)C</p>
            <p>inchikey: BTCAEOLDEYPGGE-JVAZTMFWSA-N</p>
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        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_EPISTEROL_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C28H46O/c1-18(2)19(3)7-8-20(4)24-11-12-25-23-10-9-21-17-22(29)13-15-27(21,5)26(23)14-16-28(24,25)6/h10,18,20-22,24-26,29H,3,7-9,11-17H2,1-2,4-6H3/t20-,21+,22+,24-,25+,26+,27+,28-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_5__45__PHOSPHORIBOSYL__45__5__45__AMINOIMIDAZOLE_c" id="M_5__45__PHOSPHORIBOSYL__45__5__45__AMINOIMIDAZOLE_c" name="5-amino-1-(5-phospho-&amp;beta;-D-ribosyl)imidazole" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H13N3O7P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 294.179</p>
            <p>smiles: [H][C@]1(COP([O-])([O-])=O)O[C@@]([H])(n2c[nH+]cc2N)[C@]([H])(O)[C@]1([H])O</p>
            <p>inchikey: PDACUKOKVHBVHJ-XVFCMESISA-M</p>
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        </notes>
        <annotation>
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                </rdf:Bag>
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        </annotation>
      </species>
      <species metaid="M_Charged__45__VAL__45__tRNAs_c" id="M_Charged__45__VAL__45__tRNAs_c" name="an L-valyl-[tRNAval]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_VAL__45__tRNAs_c" id="M_VAL__45__tRNAs_c" name="a tRNAval" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Charged__45__ALA__45__tRNAs_c" id="M_Charged__45__ALA__45__tRNAs_c" name="an L-alanyl-[tRNAala]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_ETOH_c" id="M_ETOH_c" name="ethanol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C2H6O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 46.0684</p>
            <p>smiles: CCO</p>
            <p>inchikey: LFQSCWFLJHTTHZ-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_ETOH_c">
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                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C2H6O/c1-2-3/h3H,2H2,1H3"/>
                </rdf:Bag>
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        </annotation>
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      <species metaid="M_ALA__45__tRNAs_c" id="M_ALA__45__tRNAs_c" name="a tRNAala" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Charged__45__LEU__45__tRNAs_c" id="M_Charged__45__LEU__45__tRNAs_c" name="an L-leucyl-[tRNAleu]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_LEU__45__tRNAs_c" id="M_LEU__45__tRNAs_c" name="a tRNAleu" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      </species>
      <species metaid="M_6Z8E10E14Z__45__5S12R__45__512__45__DIHYDROXYI_c" id="M_6Z8E10E14Z__45__5S12R__45__512__45__DIHYDROXYI_c" name="leukotriene B4" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H31O4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 335.4583</p>
            <p>smiles: CCCCC\C=C/C[C@@H](O)\C=C\C=C\C=C/[C@@H](O)CCCC([O-])=O</p>
            <p>inchikey: VNYSSYRCGWBHLG-AMOLWHMGSA-M</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 317.443</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      <species metaid="M_Chap__45__ADP__45__apo__45__SP__45__Complex_c" id="M_Chap__45__ADP__45__apo__45__SP__45__Complex_c" name="a [chaperone-ADP]-[disordered-form scaffold protein] complex" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
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          <body xmlns="http://www.w3.org/1999/xhtml"/>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 180.1559</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 504.4371</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 193.0299</p>
            <p>smiles: [O-]C(=O)C(=C)OP([O-])(=O)C([O-])=O</p>
            <p>inchikey: LPUFGTSGSICQBX-UHFFFAOYSA-K</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 196.1634</p>
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            <p>inchikey: HMLZLHKHNBLLJD-UHFFFAOYSA-N</p>
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      <species metaid="M_3__45__HYDROHYDROXYPHOSPHORYLPYRUVATE_c" id="M_3__45__HYDROHYDROXYPHOSPHORYLPYRUVATE_c" name="phosphinopyruvate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H3O5P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 150.0278</p>
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            <p>inchikey: VHAFWRWGHGSZDL-UHFFFAOYSA-L</p>
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            <rdf:Description rdf:about="#M_3__45__HYDROHYDROXYPHOSPHORYLPYRUVATE_c">
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      <species metaid="M_3__45__7__45__DIMETHYLXANTHINE_c" id="M_3__45__7__45__DIMETHYLXANTHINE_c" name="theobromine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H8N4O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 180.164</p>
            <p>smiles: Cn1cnc2n(C)c(=O)[nH]c(=O)c12</p>
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      <species metaid="M_1__45__7__45__DIMETHYLXANTHINE_c" id="M_1__45__7__45__DIMETHYLXANTHINE_c" name="paraxanthine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H8N4O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 180.164</p>
            <p>smiles: Cn1cnc2[nH]c(=O)n(C)c(=O)c12</p>
            <p>inchikey: QUNWUDVFRNGTCO-UHFFFAOYSA-N</p>
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      <species metaid="M_CPD__45__12483_c" id="M_CPD__45__12483_c" name="1,7-dimethylurate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H8N4O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 196.1634</p>
            <p>smiles: Cn1c2c([nH]c1=O)[nH]c(=O)n(C)c2=O</p>
            <p>inchikey: NOFNCLGCUJJPKU-UHFFFAOYSA-N</p>
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      <species metaid="M_SE__45__2_c" id="M_SE__45__2_c" name="selenide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="HSe">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 79.97</p>
            <p>smiles: [Se-][H]</p>
            <p>inchikey: SPVXKVOXSXTJOY-UHFFFAOYSA-M</p>
          </body>
        </notes>
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      <species metaid="M_CPD__45__12481_c" id="M_CPD__45__12481_c" name="7-methylurate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H6N4O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 182.1368</p>
            <p>smiles: Cn1c2c([nH]c1=O)[nH]c(=O)[nH]c2=O</p>
            <p>inchikey: YHNNPKUFPWLTOP-UHFFFAOYSA-N</p>
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      <species metaid="M_7__45__METHYLXANTHINE_c" id="M_7__45__METHYLXANTHINE_c" name="7-methylxanthine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H6N4O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 166.1374</p>
            <p>smiles: Cn1cnc2[nH]c(=O)[nH]c(=O)c12</p>
            <p>inchikey: PFWLFWPASULGAN-UHFFFAOYSA-N</p>
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        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_7__45__METHYLXANTHINE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C6H6N4O2/c1-10-2-7-4-3(10)5(11)9-6(12)8-4/h2H,1H3,(H2,8,9,11,12)"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Amino__45__Acids_c" id="M_Amino__45__Acids_c" name="an amino acid" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_5__45__L__45__GLUTAMYL__45__PEPTIDE_c" id="M_5__45__L__45__GLUTAMYL__45__PEPTIDE_c" name="a 5-L-glutamyl-[peptide]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C9H11N3O6R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_5__45__L__45__GLUTAMYL__45__AMINO__45__ACID_c" id="M_5__45__L__45__GLUTAMYL__45__AMINO__45__ACID_c" name="a 5-L-glutamyl-amino acid" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C7H10N2O5R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [NH3+][C@@H](CCC(=O)NC([*])C([O-])=O)C([O-])=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_L__45__glutamyl__45__tRNAGln_c" id="M_L__45__glutamyl__45__tRNAGln_c" name="an L-glutamyl-[tRNAGln]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_XLFG__45__Xyloglucans_c" id="M_XLFG__45__Xyloglucans_c" name="an XLFG xylogulcan" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Xyloglucans__45__Galactose__45__23_c" id="M_Xyloglucans__45__Galactose__45__23_c" name="an XLLG xylogulcan" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_FMNH2_c" id="M_FMNH2_c" name="FMNH2" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H21N4O9P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 456.3449</p>
            <p>smiles: Cc1cc2Nc3c([nH]c(=O)[nH]c3=O)N(C[C@H](O)[C@H](O)[C@H](O)COP([O-])([O-])=O)c2cc1C</p>
            <p>inchikey: YTNIXZGTHTVJBW-SCRDCRAPSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_FMNH2_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C17H23N4O9P/c1-7-3-9-10(4-8(7)2)21(15-13(18-9)16(25)20-17(26)19-15)5-11(22)14(24)12(23)6-30-31(27,28)29/h3-4,11-12,14,18,22-24H,5-6H2,1-2H3,(H2,27,28,29)(H2,19,20,25,26)/p-2/t11-,12+,14-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_1__45__Alkyl__45__glycerol__45__3__45__phosphate_c" id="M_1__45__Alkyl__45__glycerol__45__3__45__phosphate_c" name="a 1-alkyl-sn-glycerol 3-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H6O6PR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: O[C@H](CO[*])COP([O-])([O-])=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_1__45__Alkyl__45__2__45__acyl__45__glycerol__45__3__45__phosphate_c" id="M_1__45__Alkyl__45__2__45__acyl__45__glycerol__45__3__45__phosphate_c" name="a 2-acyl-1-alkyl-sn-glycerol 3-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O6PRR2CO">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_1__45__Alkenylglycerophosphoethanolamines_c" id="M_1__45__Alkenylglycerophosphoethanolamines_c" name="a 1-O-(alk-1-enyl)-sn-glycero-3-phosphoethanolamine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H15NO6PR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [H][C@](O)(COC=C[*])COP([O-])(=O)OCC[NH3+]</p>
          </body>
        </notes>
      </species>
      <species metaid="M_Alkyl__45__enyl__45__acyl__45__gly__45__P__45__EtOH__45__amines_c" id="M_Alkyl__45__enyl__45__acyl__45__gly__45__P__45__EtOH__45__amines_c" name="a plasmenylethanolamine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H14NO7PR2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [NH3+]CCOP([O-])(=O)OC[C@@H](COC=C*)OC(*)=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_PLASMENYLCHOLINE_c" id="M_PLASMENYLCHOLINE_c" name="a plasmenylcholine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H20NO7PR2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: C[N+](C)(C)CCOP([O-])(=O)OC[C@@H](CO\C=C\[*])OC([*])=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_CPD__45__563_c" id="M_CPD__45__563_c" name="a 1-(1-alkenyl)-sn-glycero-3-phosphocholine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H21NO6PR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: C[N+](C)(C)CCOP([O-])(=O)OC[C@H](O)CO\C=C\[*]</p>
          </body>
        </notes>
      </species>
      <species metaid="M_CPD__45__69_c" id="M_CPD__45__69_c" name="cyanate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CNO">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 42.0173</p>
            <p>smiles: [O-]C#N</p>
            <p>inchikey: XLJMAIOERFSOGZ-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__69_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/CHNO/c2-1-3/h3H/p-1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_mRNAs_c" id="M_mRNAs_c" name="an mRNA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__8607_c" id="M_CPD__45__8607_c" name="4,4-dimethyl-14&amp;alpha;-hydroxymethyl-5&amp;alpha;-cholesta-8-en-3&amp;beta;-ol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H52O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 444.7327</p>
            <p>smiles: [H]C(C)(CCCC(C)C)C1([H])CC[C@@]2(CO)C3=C(CC[C@]12C)[C@@]1(C)CC[C@]([H])(O)C(C)(C)C1([H])CC3</p>
            <p>inchikey: SJPDNXKPBQHPMZ-XQVXCQOBSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__8607_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C30H52O2/c1-20(2)9-8-10-21(3)22-14-18-30(19-31)24-11-12-25-27(4,5)26(32)15-16-28(25,6)23(24)13-17-29(22,30)7/h20-22,25-26,31-32H,8-19H2,1-7H3/t21?,22?,25?,26-,28+,29+,30+/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__8608_c" id="M_CPD__45__8608_c" name="4,4-dimethyl-14&amp;alpha;-formyl-5&amp;alpha;-cholesta-8-en-3&amp;beta;-ol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C30H50O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 442.7168</p>
            <p>smiles: [H]C(C)(CCCC(C)C)C1([H])CC[C@@]2(C=O)C3=C(CC[C@]12C)[C@@]1(C)CC[C@]([H])(O)C(C)(C)C1([H])CC3</p>
            <p>inchikey: MKMLAQLNFVFNRK-XQVXCQOBSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__8608_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C30H50O2/c1-20(2)9-8-10-21(3)22-14-18-30(19-31)24-11-12-25-27(4,5)26(32)15-16-28(25,6)23(24)13-17-29(22,30)7/h19-22,25-26,32H,8-18H2,1-7H3/t21?,22?,25?,26-,28+,29+,30+/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_PORPHOBILINOGEN_c" id="M_PORPHOBILINOGEN_c" name="porphobilinogen" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H13N2O4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 225.2218</p>
            <p>smiles: [NH3+]Cc1[nH]cc(CCC([O-])=O)c1CC([O-])=O</p>
            <p>inchikey: QSHWIQZFGQKFMA-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_PORPHOBILINOGEN_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C10H14N2O4/c11-4-8-7(3-10(15)16)6(5-12-8)1-2-9(13)14/h5,12H,1-4,11H2,(H,13,14)(H,15,16)/p-1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_XANTHINE_c" id="M_XANTHINE_c" name="xanthine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4N4O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 152.1109</p>
            <p>smiles: O=c1[nH]c2[nH]cnc2c(=O)[nH]1</p>
            <p>inchikey: LRFVTYWOQMYALW-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_XANTHINE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C5H4N4O2/c10-4-2-3(7-1-6-2)8-5(11)9-4/h1H,(H3,6,7,8,9,10,11)"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CARBOXYPHENYLAMINO__45__DEOXYRIBULOSE__45__P_c" id="M_CARBOXYPHENYLAMINO__45__DEOXYRIBULOSE__45__P_c" name="1-(o-carboxyphenylamino)-1&apos;-deoxyribulose 5&apos;-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C12H13NO9P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 346.2083</p>
            <p>smiles: O[C@H](COP([O-])([O-])=O)[C@@H](O)C(=O)CNc1ccccc1C([O-])=O</p>
            <p>inchikey: QKMBYNRMPRKVTO-MNOVXSKESA-K</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CARBOXYPHENYLAMINO__45__DEOXYRIBULOSE__45__P_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C12H16NO9P/c14-9(11(16)10(15)6-22-23(19,20)21)5-13-8-4-2-1-3-7(8)12(17)18/h1-4,10-11,13,15-16H,5-6H2,(H,17,18)(H2,19,20,21)/p-3/t10-,11+/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_XANTHOSINE_c" id="M_XANTHOSINE_c" name="xanthosine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N4O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 284.2255</p>
            <p>smiles: OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n1cnc2c1[nH]c(=O)[nH]c2=O</p>
            <p>inchikey: UBORTCNDUKBEOP-UUOKFMHZSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_XANTHOSINE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C10H12N4O6/c15-1-3-5(16)6(17)9(20-3)14-2-11-4-7(14)12-10(19)13-8(4)18/h2-3,5-6,9,15-17H,1H2,(H2,12,13,18,19)/t3-,5-,6-,9-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__8610_c" id="M_CPD__45__8610_c" name="4,4-dimethyl-5&amp;alpha;-cholesta-8-en-3-&amp;beta;-ol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H50O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 414.7067</p>
            <p>smiles: [H][C@@]1(CC[C@@]2([H])C3=C(CC[C@]12C)[C@@]1(C)CC[C@H](O)C(C)(C)[C@]1([H])CC3)[C@H](C)CCCC(C)C</p>
            <p>inchikey: FYHRVINOXYETMN-QGBOJXOESA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__8610_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C29H50O/c1-19(2)9-8-10-20(3)22-12-13-23-21-11-14-25-27(4,5)26(30)16-18-29(25,7)24(21)15-17-28(22,23)6/h19-20,22-23,25-26,30H,8-18H2,1-7H3/t20-,22-,23+,25+,26+,28-,29-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CIS__45__DELTA3__45__ENOYL__45__COA_c" id="M_CIS__45__DELTA3__45__ENOYL__45__COA_c" name="a cis-3-enoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C25H35N7O17P3SR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12)[C@@H](O)C(=O)NCCC(=O)NCCSC(=O)C\C=C/[*]</p>
          </body>
        </notes>
      </species>
      <species metaid="M_L__45__3__45__HYDROXYACYL__45__COA_c" id="M_L__45__3__45__HYDROXYACYL__45__COA_c" name="a (3S)-3-hydroxyacyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C24H35N7O18P3SR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12)[C@@H](O)C(=O)NCCC(=O)NCCSC(=O)C[C@@H](O)[*]</p>
          </body>
        </notes>
      </species>
      <species metaid="M_Apo__45__EntB_c" id="M_Apo__45__EntB_c" name="an apo-[EntB isochorismatase/aryl-carrier protein]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Holo__45__EntB_c" id="M_Holo__45__EntB_c" name="a holo-[EntB isochorismatase/aryl-carrier protein]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CROTONYL__45__COA_c" id="M_CROTONYL__45__COA_c" name="crotonyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C25H36N7O17P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 831.579</p>
            <p>smiles: C\C=C\C(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: KFWWCMJSYSSPSK-PAXLJYGASA-J</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CROTONYL__45__COA_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C25H40N7O17P3S/c1-4-5-16(34)53-9-8-27-15(33)6-7-28-23(37)20(36)25(2,3)11-46-52(43,44)49-51(41,42)45-10-14-19(48-50(38,39)40)18(35)24(47-14)32-13-31-17-21(26)29-12-30-22(17)32/h4-5,12-14,18-20,24,35-36H,6-11H2,1-3H3,(H,27,33)(H,28,37)(H,41,42)(H,43,44)(H2,26,29,30)(H2,38,39,40)/p-4/b5-4+/t14-,18-,19-,20+,24-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__15360_c" id="M_CPD__45__15360_c" name="2-thio-N6-dimethylallyladenosine37 in tRNA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H19N5O10P2SR2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CC(C)=CCNc1nc(S)nc2n(cnc12)[C@@H]1O[C@H](COP([O-])(=O)O*)[C@@H](OP([O-])(=O)O*)[C@H]1O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_RAD21__45__Cohesin__45__Subunits_c" id="M_RAD21__45__Cohesin__45__Subunits_c" name="a RAD21 cohesin subunit" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__12673_c" id="M_CPD__45__12673_c" name="5-chloro-5-deoxy-D-ribonate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H8ClO5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 183.568</p>
            <p>smiles: [H][C@@](O)(CCl)[C@@]([H])(O)[C@@]([H])(O)C([O-])=O</p>
            <p>inchikey: IJQSOCFSKCENOW-BXXZVTAOSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__12673_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C5H9ClO5/c6-1-2(7)3(8)4(9)5(10)11/h2-4,7-9H,1H2,(H,10,11)/p-1/t2-,3-,4-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__15373_c" id="M_CPD__45__15373_c" name="aldehydo-D-mannose" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 180.1559</p>
            <p>smiles: [H]C(=O)[C@@H](O)[C@@H](O)[C@H](O)[C@H](O)CO</p>
            <p>inchikey: GZCGUPFRVQAUEE-KVTDHHQDSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__15373_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C6H12O6/c7-1-3(9)5(11)6(12)4(10)2-8/h1,3-6,8-12H,2H2/t3-,4-,5-,6-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__11020_c" id="M_CPD__45__11020_c" name="5-chloro-4-hydroxy-2-oxopentanoate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H6ClO4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 165.552</p>
            <p>smiles: OC(CCl)CC(=O)C([O-])=O</p>
            <p>inchikey: FHWPHVIGZZAXIQ-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__11020_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C5H7ClO4/c6-2-3(7)1-4(8)5(9)10/h3,7H,1-2H2,(H,9,10)/p-1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__380_c" id="M_CPD__45__380_c" name="3-sulfopyruvate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H2O6S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 166.11</p>
            <p>smiles: [O-]C(=O)C(=O)CS([O-])(=O)=O</p>
            <p>inchikey: BUTHMSUEBYPMKJ-UHFFFAOYSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__380_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C3H4O6S/c4-2(3(5)6)1-10(7,8)9/h1H2,(H,5,6)(H,7,8,9)/p-2"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_BETA__45__D__45__FRUCTOSE_c" id="M_BETA__45__D__45__FRUCTOSE_c" name="&amp;beta;-D-fructofuranose" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 180.1559</p>
            <p>smiles: OC[C@H]1O[C@](O)(CO)[C@@H](O)[C@@H]1O</p>
            <p>inchikey: RFSUNEUAIZKAJO-ARQDHWQXSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_BETA__45__D__45__FRUCTOSE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C6H12O6/c7-1-3-4(9)5(10)6(11,2-8)12-3/h3-5,7-11H,1-2H2/t3-,4-,5+,6-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_25S__45__rRNA__45__N1__45__methyladenine__45__2142_c" id="M_25S__45__rRNA__45__N1__45__methyladenine__45__2142_c" name="N1-methyladenine2142 in 25S rRNA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C11H13N5O10P2R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: Cn1cnc2n(cnc2c1=N)[C@@H]1O[C@H](COP([O-])(=O)O*)[C@@H](OP([O-])(=O)O*)[C@H]1O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_L__45__CYSTEATE_c" id="M_L__45__CYSTEATE_c" name="L-cysteate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H6NO5S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 168.149</p>
            <p>smiles: [NH3+][C@@H](CS([O-])(=O)=O)C([O-])=O</p>
            <p>inchikey: XVOYSCVBGLVSOL-REOHCLBHSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_L__45__CYSTEATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C3H7NO5S/c4-2(3(5)6)1-10(7,8)9/h2H,1,4H2,(H,5,6)(H,7,8,9)/p-1/t2-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_25S__45__rRNA__45__adenine__45__2142_c" id="M_25S__45__rRNA__45__adenine__45__2142_c" name="adenine2142 in 25S rRNA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H11N5O10P2R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: Nc1ncnc2n(cnc12)[C@@H]1O[C@H](COP([O-])(=O)O*)[C@@H](OP([O-])(=O)O*)[C@H]1O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_CPD__45__15435_c" id="M_CPD__45__15435_c" name="L-threonylcarbamoyladenylate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C15H19N6O11P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 490.3198</p>
            <p>smiles: C[C@@H](O)[C@H](NC(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n1cnc2c(N)ncnc12)C([O-])=O</p>
            <p>inchikey: GHLUPQUHEIJRCU-DWVDDHQFSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__15435_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C15H21N6O11P/c1-5(22)7(14(25)26)20-15(27)32-33(28,29)30-2-6-9(23)10(24)13(31-6)21-4-19-8-11(16)17-3-18-12(8)21/h3-7,9-10,13,22-24H,2H2,1H3,(H,20,27)(H,25,26)(H,28,29)(H2,16,17,18)/p-2/t5-,6-,7+,9-,10-,13-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__3187_c" id="M_CPD__45__3187_c" name="2&apos;-hydroxynicotine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C10H15N2O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 179.2384</p>
            <p>smiles: C[NH+]1CCC[C@@]1(O)c1cccnc1</p>
            <p>inchikey: BOQRPPFUUSHFGW-SNVBAGLBSA-O</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__3187_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C10H14N2O/c1-12-7-3-5-10(12,13)9-4-2-6-11-8-9/h2,4,6,8,13H,3,5,7H2,1H3/p+1/t10-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__2742_c" id="M_CPD__45__2742_c" name="cotinine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N2O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 176.2151</p>
            <p>smiles: [H][C@]1(CCC(=O)N1C)c1cccnc1</p>
            <p>inchikey: UIKROCXWUNQSPJ-VIFPVBQESA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__2742_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C10H12N2O/c1-12-9(4-5-10(12)13)8-3-2-6-11-7-8/h2-3,6-7,9H,4-5H2,1H3/t9-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__2750_c" id="M_CPD__45__2750_c" name="trans-3&apos;-hydroxycotinine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N2O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 192.2145</p>
            <p>smiles: [H][C@]1(C[C@@H](O)C(=O)N1C)c1cccnc1</p>
            <p>inchikey: XOKCJXZZNAUIQN-DTWKUNHWSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__2750_c">
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      <species metaid="M_PROTEIN__45__LIPOYLLYSINE_c" id="M_PROTEIN__45__LIPOYLLYSINE_c" name="a [glycine-cleavage complex H protein] N6-lipoyl-L-lysine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
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            <p>mass: 192.2145</p>
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            <p>mass: 192.2145</p>
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            <p>mass: 1041.934</p>
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            <p>mass: 997.882</p>
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            <p>mass: 999.897</p>
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            <p>mass: 150.1299</p>
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            <p>mass: 1015.897</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1013.881</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 971.844</p>
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        <notes>
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            <p>mass: 224.168</p>
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            <p>inchikey: FPWMCUPFBRFMLH-XGAOUMNUSA-L</p>
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        </notes>
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        <notes>
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            <p>mass: 133.0833</p>
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            <p>inchikey: NWZYYCVIOKVTII-SFOWXEAESA-M</p>
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        </notes>
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      <species metaid="M_Long__45__Chain__45__Aldehydes_c" id="M_Long__45__Chain__45__Aldehydes_c" name="a long-chain aldehyde" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CHOR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [H]C([*])=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_DIHYDROXY__45__BUTANONE__45__P_c" id="M_DIHYDROXY__45__BUTANONE__45__P_c" name="1-deoxy-L-glycero-tetrulose 4-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C4H7O6P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 182.0696</p>
            <p>smiles: CC(=O)C(O)COP([O-])([O-])=O</p>
            <p>inchikey: OKYHYXLCTGGOLM-UHFFFAOYSA-L</p>
          </body>
        </notes>
        <annotation>
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      <species metaid="M_Oxo__45__glutarate__45__dehydrogenase__45__lipoyl_c" id="M_Oxo__45__glutarate__45__dehydrogenase__45__lipoyl_c" name="a [2-oxoglutarate dehydrogenase E2 protein] N6-lipoyl-L-lysine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H13OS2R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      <species metaid="M_CPD__45__1828_c" id="M_CPD__45__1828_c" name="GDP-&amp;alpha;-D-mannuronate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C16H20N5O17P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 616.3025</p>
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      <species metaid="M_CPD__45__12763_c" id="M_CPD__45__12763_c" name="5-aminopentanal" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H12NO">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 102.1543</p>
            <p>smiles: [NH3+]CCCCC=O</p>
            <p>inchikey: SZBGXBOFCGNPEU-UHFFFAOYSA-O</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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      <species metaid="M_AMMONIA_c" id="M_AMMONIA_c" name="ammonia" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H4N">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 18.0379</p>
            <p>smiles: [H][N+]([H])([H])[H]</p>
            <p>inchikey: QGZKDVFQNNGYKY-UHFFFAOYSA-O</p>
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        </notes>
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            <rdf:Description rdf:about="#M_AMMONIA_c">
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                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/H3N/h1H3/p+1"/>
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      <species metaid="M_23S__45__rRNA__45__pseudouridine955__45__2504__45__2580_c" id="M_23S__45__rRNA__45__pseudouridine955__45__2504__45__2580_c" name="a pseudouridine955/2504/2580 in 23S rRNA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      <species metaid="M_23S__45__rRNA__45__uridine955__45__2504__45__2580_c" id="M_23S__45__rRNA__45__uridine955__45__2504__45__2580_c" name="uridine955/2504/2580 in 23S rRNA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      <species metaid="M_CPD__45__12850_c" id="M_CPD__45__12850_c" name="4&amp;alpha;,14&amp;alpha;-dimethyl-9&amp;beta;,19-cyclo-5&amp;alpha;-cholest-24-en-3&amp;beta;-ol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H48O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 412.6908</p>
            <p>smiles: [H][C@@]1(CC[C@@]2(C)[C@]3([H])CC[C@@]4([H])[C@H](C)[C@@H](O)CCC44CC34CC[C@]12C)[C@H](C)CCC=C(C)C</p>
            <p>inchikey: XZEUYTKSAYNYPK-YETBRXCGSA-N</p>
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        <annotation>
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      <species metaid="M_CPD__45__12852_c" id="M_CPD__45__12852_c" name="4&amp;alpha;,14&amp;alpha;-dimethyl-5&amp;alpha;-cholesta-8,24-dien-3&amp;beta;-ol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C29H48O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 412.6908</p>
            <p>smiles: [H][C@@]1(CC[C@@]2(C)C3=C(CC[C@]12C)[C@@]1(C)CC[C@H](O)[C@@H](C)[C@]1([H])CC3)[C@H](C)CCC=C(C)C</p>
            <p>inchikey: KLZWTHGLLDRKHD-PMIIOQGLSA-N</p>
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      <species metaid="M_CPD__45__12853_c" id="M_CPD__45__12853_c" name="4&amp;alpha;-methyl-5&amp;alpha;-cholesta-8,14,24-trien-3&amp;beta;-ol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H44O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 396.6484</p>
            <p>smiles: [H][C@@](C)(CCC=C(C)C)C1([H])CC=C2C3=C(CC[C@]12C)[C@@]1(C)CC[C@]([H])(O)[C@@]([H])(C)C1([H])CC3</p>
            <p>inchikey: QJVMEAZHJKXWJD-FEOMKCNXSA-N</p>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_N6__45__L__45__threonylcarbamoyladenine37__45__tRNAs_c" id="M_N6__45__L__45__threonylcarbamoyladenine37__45__tRNAs_c" name="N6-L-threonylcarbamoyladenine37 in tRNA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C15H17N6O14P2R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: C[C@@H](O)[C@H](NC(=O)Nc1ncnc2n(cnc12)[C@@H]1O[C@H](COP([O-])(=O)O*)[C@@H](OP([O-])(=O)O*)[C@H]1O)C([O-])=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_tRNA__45__adenine__45__37_c" id="M_tRNA__45__adenine__45__37_c" name="an adenine37 in tRNA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H11N5O10P2R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: Nc1ncnc2n(cnc12)[C@@H]1O[C@H](COP([O-])(=O)O*)[C@@H](OP([O-])(=O)O*)[C@H]1O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_CPD__45__15530_c" id="M_CPD__45__15530_c" name="aldehydo-D-glucuronate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O7">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 193.132</p>
            <p>smiles: [H]C(=O)[C@H](O)[C@@H](O)[C@H](O)[C@H](O)C([O-])=O</p>
            <p>inchikey: IAJILQKETJEXLJ-QTBDOELSSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__15530_c">
              <bqbiol:isVersionOf>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_R__45__3__45__hydroxydodecanoyl__45__ACPs_c" id="M_R__45__3__45__hydroxydodecanoyl__45__ACPs_c" name="a (3R)-3-hydroxydodecanoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__15566_c" id="M_CPD__45__15566_c" name="2-trans,4-trans-tetradecadienoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H54N7O17P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 969.828</p>
            <p>smiles: CCCCCCCCC\C=C\C=C\C(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: ULOGSHZMDLRQRY-INBGBNCRSA-J</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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                </rdf:Bag>
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        </annotation>
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      <species metaid="M_CPD__45__15567_c" id="M_CPD__45__15567_c" name="3-trans-tetradecenoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O17P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 971.844</p>
            <p>smiles: CCCCCCCCCC\C=C\CC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: SSOCUKXLUZQJHU-CTFJFIKLSA-J</p>
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                </rdf:Bag>
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      <species metaid="M_PROPIONATE_c" id="M_PROPIONATE_c" name="propanoate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3H5O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 73.0711</p>
            <p>smiles: CCC([O-])=O</p>
            <p>inchikey: XBDQKXXYIPTUBI-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_PROPIONATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C3H6O2/c1-2-3(4)5/h2H2,1H3,(H,4,5)/p-1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
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        </annotation>
      </species>
      <species metaid="M_PROPIONAMIDE_c" id="M_PROPIONAMIDE_c" name="propionamide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 73.0938</p>
            <p>smiles: CCC(N)=O</p>
            <p>inchikey: QLNJFJADRCOGBJ-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_PROPIONAMIDE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C3H7NO/c1-2-3(4)5/h2H2,1H3,(H2,4,5)"/>
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        </annotation>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 443.6822</p>
            <p>smiles: [H][C@@]1(CC[C@@]2([H])C3=C(CC[C@]12C)[C@@]1(C)CC[C@H](O)[C@@](C)(C([O-])=O)[C@]1([H])CC3)[C@H](C)CCCC(C)C</p>
            <p>inchikey: GLCDBDRQLZKKOJ-LJAIZBFVSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__8613_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C29H48O3/c1-18(2)8-7-9-19(3)21-11-12-22-20-10-13-24-28(5,23(20)14-16-27(21,22)4)17-15-25(30)29(24,6)26(31)32/h18-19,21-22,24-25,30H,7-17H2,1-6H3,(H,31,32)/p-1/t19-,21-,22+,24-,25+,27-,28-,29+/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
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          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__3483_c" id="M_CPD__45__3483_c" name="hydroxybupropion" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C13H19ClNO2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 256.748</p>
            <p>smiles: CC([NH2+]C(C)(C)CO)C(=O)c1cccc(Cl)c1</p>
            <p>inchikey: AKOAEVOSDHIVFX-UHFFFAOYSA-O</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__3483_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
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        </annotation>
      </species>
      <species metaid="M_CPD__45__3481_c" id="M_CPD__45__3481_c" name="bupropion" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C13H19ClNO">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 240.749</p>
            <p>smiles: CC([NH2+]C(C)(C)C)C(=O)c1cccc(Cl)c1</p>
            <p>inchikey: SNPPWIUOZRMYNY-UHFFFAOYSA-O</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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                </rdf:Bag>
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      <species metaid="M_CPD__45__8620_c" id="M_CPD__45__8620_c" name="5&amp;alpha;-cholesta-8-en-3-one" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 384.6377</p>
            <p>smiles: [H]C(C)(CCCC(C)C)C1([H])CCC2([H])C3=C(CC[C@]12C)[C@@]1(C)CCC(=O)CC1([H])CC3</p>
            <p>inchikey: RZSXSHNNQBIPTL-HJWVNVQISA-N</p>
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        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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        </annotation>
      </species>
      <species metaid="M_CPD__45__8619_c" id="M_CPD__45__8619_c" name="4&amp;alpha;-carboxy-5&amp;alpha;-cholesta-8-en-3&amp;beta;-ol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C28H45O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 429.6556</p>
            <p>smiles: [H][C@@]1(CC[C@@]2([H])C3=C(CC[C@]12C)[C@@]1(C)CC[C@H](O)[C@@H](C([O-])=O)[C@]1([H])CC3)[C@H](C)CCCC(C)C</p>
            <p>inchikey: RODBXVVNKJCWQR-GSQAGGHASA-M</p>
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        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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        </annotation>
      </species>
      <species metaid="M_DESMOSTEROL__45__CPD_c" id="M_DESMOSTEROL__45__CPD_c" name="desmosterol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H44O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 384.6377</p>
            <p>smiles: [H][C@@]1(CC[C@@]2([H])[C@]3([H])CC=C4C[C@@H](O)CC[C@]4(C)[C@@]3([H])CC[C@]12C)[C@H](C)CCC=C(C)C</p>
            <p>inchikey: AVSXSVCZWQODGV-DPAQBDIFSA-N</p>
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        <annotation>
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            <rdf:Description rdf:about="#M_DESMOSTEROL__45__CPD_c">
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                </rdf:Bag>
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            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_HIS_c" id="M_HIS_c" name="L-histidine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9N3O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 155.1546</p>
            <p>smiles: [NH3+][C@@H](Cc1c[nH]cn1)C([O-])=O</p>
            <p>inchikey: HNDVDQJCIGZPNO-YFKPBYRVSA-N</p>
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        </notes>
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            <rdf:Description rdf:about="#M_HIS_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C6H9N3O2/c7-5(6(10)11)1-4-2-8-3-9-4/h2-3,5H,1,7H2,(H,8,9)(H,10,11)/t5-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_ADENOSYLCOBALAMIN_e" id="M_ADENOSYLCOBALAMIN_e" name="adenosylcobalamin" compartment="e" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C72H100CoN18O17P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1579.5818</p>
            <p>smiles: [Co-3]1234(C[C@@H]5[C@H]([C@H]([C@H](n6cnc7c(ncnc67)N)O5)O)O)[N+]5=C6C(=C7[C@](C)(CCC(=O)NC[C@H](OP(=O)([O-])O[C@@H]8[C@@H](CO)O[C@@H]([C@@H]8O)n8c[n+]1c1c8cc(c(C)c1)C)C)[C@@H](CC(=O)N)[C@@]([C@]1([C@@](C)(CC(=O)N)[C@@H](C(C(C)=C8[N+]2=C(C=C5C(C)(C)[C@@H]6CCC(=O)N)[C@@H](CCC(=O)N)[C@]8(C)CC(=O)N)=[N+]31)CCC(=O)N)C)([H])N47)C</p>
            <p>inchikey: ZIHHMGTYZOSFRC-OUCXYWSSSA-L</p>
          </body>
        </notes>
        <annotation>
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              </bqbiol:isVersionOf>
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          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_ADENOSYLCOBALAMIN_c" id="M_ADENOSYLCOBALAMIN_c" name="adenosylcobalamin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C72H100CoN18O17P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1579.5818</p>
            <p>smiles: [Co-3]1234(C[C@@H]5[C@H]([C@H]([C@H](n6cnc7c(ncnc67)N)O5)O)O)[N+]5=C6C(=C7[C@](C)(CCC(=O)NC[C@H](OP(=O)([O-])O[C@@H]8[C@@H](CO)O[C@@H]([C@@H]8O)n8c[n+]1c1c8cc(c(C)c1)C)C)[C@@H](CC(=O)N)[C@@]([C@]1([C@@](C)(CC(=O)N)[C@@H](C(C(C)=C8[N+]2=C(C=C5C(C)(C)[C@@H]6CCC(=O)N)[C@@H](CCC(=O)N)[C@]8(C)CC(=O)N)=[N+]31)CCC(=O)N)C)([H])N47)C</p>
            <p>inchikey: ZIHHMGTYZOSFRC-OUCXYWSSSA-L</p>
          </body>
        </notes>
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            <rdf:Description rdf:about="#M_ADENOSYLCOBALAMIN_c">
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            </rdf:Description>
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        </annotation>
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      <species metaid="M_AMMONIA_e" id="M_AMMONIA_e" name="ammonia" compartment="e" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H4N">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 18.0379</p>
            <p>smiles: [H][N+]([H])([H])[H]</p>
            <p>inchikey: QGZKDVFQNNGYKY-UHFFFAOYSA-O</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_AMMONIA_e">
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                <rdf:Bag>
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      <species metaid="M_BIOTIN_e" id="M_BIOTIN_e" name="biotin" compartment="e" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H15N2O3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 243.303</p>
            <p>smiles: [H][C@]12CS[C@@H](CCCCC([O-])=O)[C@@]1([H])NC(=O)N2</p>
            <p>inchikey: YBJHBAHKTGYVGT-ZKWXMUAHSA-M</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_BIOTIN_e">
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      <species metaid="M_CA__43__2_c" id="M_CA__43__2_c" name="Ca2+" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Ca">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 40.077</p>
            <p>smiles: [Ca++]</p>
            <p>inchikey: BHPQYMZQTOCNFJ-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_CA__43__2_c">
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                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/Ca/q+2"/>
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      <species metaid="M_CA__43__2_e" id="M_CA__43__2_e" name="Ca2+" compartment="e" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Ca">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 40.077</p>
            <p>smiles: [Ca++]</p>
            <p>inchikey: BHPQYMZQTOCNFJ-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_CA__43__2_e">
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                <rdf:Bag>
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      <species metaid="M_CARBON__45__DIOXIDE_e" id="M_CARBON__45__DIOXIDE_e" name="CO2" compartment="e" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CO2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 44.0095</p>
            <p>smiles: O=C=O</p>
            <p>inchikey: CURLTUGMZLYLDI-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CARBON__45__DIOXIDE_e">
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                <rdf:Bag>
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      <species metaid="M_RIBOSE__45__1P_c" id="M_RIBOSE__45__1P_c" name="&amp;alpha;-D-ribose-1-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O8P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 228.095</p>
            <p>smiles: OC[C@H]1O[C@H](OP([O-])([O-])=O)[C@H](O)[C@@H]1O</p>
            <p>inchikey: YXJDFQJKERBOBM-TXICZTDVSA-L</p>
          </body>
        </notes>
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        </annotation>
      </species>
      <species metaid="M_CPD__45__13357_c" id="M_CPD__45__13357_c" name="(2R)-2,3-dihydroxy-3-methylbutanoate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H9O4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 133.1231</p>
            <p>smiles: CC(C)(O)[C@@H](O)C([O-])=O</p>
            <p>inchikey: JTEYKUFKXGDTEU-VKHMYHEASA-M</p>
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        </notes>
        <annotation>
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      <species metaid="M_1__45__KETO__45__2__45__METHYLVALERATE_c" id="M_1__45__KETO__45__2__45__METHYLVALERATE_c" name="(R)-2,3-dihydroxy-3-methylpentanoate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 147.1497</p>
            <p>smiles: CC[C@@](C)(O)[C@@H](O)C([O-])=O</p>
            <p>inchikey: PDGXJDXVGMHUIR-UJURSFKZSA-M</p>
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        <annotation>
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            <rdf:Description rdf:about="#M_1__45__KETO__45__2__45__METHYLVALERATE_c">
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                </rdf:Bag>
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      <species metaid="M_ALPHA__45__GLUCOSE__45__16__45__BISPHOSPHATE_c" id="M_ALPHA__45__GLUCOSE__45__16__45__BISPHOSPHATE_c" name="&amp;alpha;-glucose 1,6-bisphosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C6H10O12P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 336.0861</p>
            <p>smiles: O[C@H]1[C@H](O)[C@@H](COP([O-])([O-])=O)O[C@H](OP([O-])([O-])=O)[C@@H]1O</p>
            <p>inchikey: RWHOZGRAXYWRNX-VFUOTHLCSA-J</p>
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        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_ALPHA__45__GLUCOSE__45__16__45__BISPHOSPHATE_c">
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Phosphoglucomutase_c" id="M_Phosphoglucomutase_c" name="a phosphoglucomutase" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Phosphorylated__45__phosphoglucomutase_c" id="M_Phosphorylated__45__phosphoglucomutase_c" name="a phosphorylated phosphoglucomutase" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__18350_c" id="M_CPD__45__18350_c" name="1-palmitoyl-2-palmitoleoyl phosphatidate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C35H65O8P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 644.8607</p>
            <p>smiles: CCCCCCCCCCCCCCCC(=O)OC[C@H](COP([O-])([O-])=O)OC(=O)CCCCCCC\C=C\CCCCCC</p>
            <p>inchikey: SCNLPRDASXIFJK-IQULNDIKSA-L</p>
          </body>
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      </species>
      <species metaid="M_CPD__45__458_c" id="M_CPD__45__458_c" name="galactinol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H22O11">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 342.2965</p>
            <p>smiles: OC[C@H]1O[C@H](O[C@H]2[C@@H](O)[C@@H](O)[C@H](O)[C@@H](O)[C@@H]2O)[C@H](O)[C@@H](O)[C@H]1O</p>
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      <species metaid="M_CPD__45__8259_c" id="M_CPD__45__8259_c" name="&amp;beta;-D-ribosylnicotinate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H13NO6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 255.224</p>
            <p>smiles: OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)[n+]1cccc(c1)C([O-])=O</p>
            <p>inchikey: PUEDDPCUCPRQNY-ZYUZMQFOSA-N</p>
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        <annotation>
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      <species metaid="M_CPD__45__18351_c" id="M_CPD__45__18351_c" name="1-cis-vaccenoyl-2-palmitoleoyl phosphatidate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C37H67O8P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 670.8979</p>
            <p>smiles: CCCCCC\C=C\CCCCCCCCCC(=O)OC[C@H](COP([O-])([O-])=O)OC(=O)CCCCCCC\C=C\CCCCCC</p>
            <p>inchikey: GLZNXLKBZKJBCJ-AUKUPFFRSA-L</p>
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      <species metaid="M_CPD__45__18348_c" id="M_CPD__45__18348_c" name="1-cis-vaccenoylglycerol-3-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H39O7P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 434.505</p>
            <p>smiles: CCCCCC\C=C/CCCCCCCCCC(=O)OCC(O)COP([O-])([O-])=O</p>
            <p>inchikey: LWSYATLSXCUNTB-FPLPWBNLSA-L</p>
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        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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      <species metaid="M_CPD__45__18352_c" id="M_CPD__45__18352_c" name="1-palmitoyl-2-cis-vaccenoyl phosphatidate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C37H69O8P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 672.9138</p>
            <p>smiles: CCCCCCCCCCCCCCCC(=O)OC[C@H](COP([O-])([O-])=O)OC(=O)CCCCCCCCC\C=C\CCCCCC</p>
            <p>inchikey: YDFKTEAAIYLUQP-WNHJEKBPSA-L</p>
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          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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      <species metaid="M_UDP__45__D__45__XYLOSE_c" id="M_UDP__45__D__45__XYLOSE_c" name="UDP-&amp;alpha;-D-xylose" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C14H20N2O16P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 534.261</p>
            <p>smiles: O[C@@H]1[C@@H](COP([O-])(=O)OP([O-])(=O)O[C@H]2OC[C@@H](O)[C@H](O)[C@H]2O)O[C@H]([C@@H]1O)n1ccc(=O)[nH]c1=O</p>
            <p>inchikey: DQQDLYVHOTZLOR-OCIMBMBZSA-L</p>
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        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_UDP__45__D__45__XYLOSE_c">
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        </annotation>
      </species>
      <species metaid="M_N4__45__N__45__ACETYL__45__BETA__45__D__45__GLUCOSAMINYL__45__X_c" id="M_N4__45__N__45__ACETYL__45__BETA__45__D__45__GLUCOSAMINYL__45__X_c" name="an N4-{N-acetyl-&amp;beta;-D-glucosaminyl-(1,2)-&amp;alpha;-D-mannosyl-(1,3)-[N-acetyl-&amp;beta;-D-glucosaminyl-(1,2)-&amp;alpha;-D-mannosyl-(1,6)]-[&amp;beta;-D-xylosyl-(1,2)]-&amp;beta;-D-mannosyl-(1,4)-N-acetyl-&amp;beta;-D-glucosaminyl-(1,4)-N-acetyl-&amp;beta;-D-glucosaminyl}-L-asparagine-[protein]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C59H98N6O42">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1562</p>
          </body>
        </notes>
      </species>
      <species metaid="M_CPD__45__18353_c" id="M_CPD__45__18353_c" name="1,2-dicis-vaccenoyl-phosphatidate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C39H71O8P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 698.9511</p>
            <p>smiles: CCCCCC\C=C\CCCCCCCCCC(=O)OC[C@H](COP([O-])([O-])=O)OC(=O)CCCCCCCCC\C=C\CCCCCC</p>
            <p>inchikey: LMYYBYHAZAFVTR-YKEOXISKSA-L</p>
          </body>
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        <annotation>
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        </annotation>
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      <species metaid="M_ALPHA__45__N__45__ACETYLNEURAMINYL__45__23__45__BETA__45__ETCETER_c" id="M_ALPHA__45__N__45__ACETYLNEURAMINYL__45__23__45__BETA__45__ETCETER_c" name="&amp;alpha;-N-acetylneuraminyl-(2&amp;rarr;3)-&amp;beta;-D-galactosyl-(1&amp;rarr;4)-N-acetyl-&amp;beta;-D-glucosaminyl-R" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C25H40N2O19R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [H][C@]1(O[C@](C[C@H](O)[C@H]1NC(C)=O)(O[C@H]1[C@@H](O)[C@@H](CO)O[C@@H](O[C@H]2[C@H](O)[C@@H](NC(C)=O)[C@H](O[*])O[C@@H]2CO)[C@@H]1O)C([O-])=O)[C@H](O)[C@H](O)CO</p>
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        </notes>
      </species>
      <species metaid="M_3__45__ENOLPYRUVYL__45__SHIKIMATE__45__5P_c" id="M_3__45__ENOLPYRUVYL__45__SHIKIMATE__45__5P_c" name="5-enolpyruvoyl-shikimate 3-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C10H9O10P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 320.1484</p>
            <p>smiles: O[C@H]1[C@@H](CC(=C[C@H]1OP([O-])([O-])=O)C([O-])=O)OC(=C)C([O-])=O</p>
            <p>inchikey: QUTYKIXIUDQOLK-PRJMDXOYSA-J</p>
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        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_3__45__ENOLPYRUVYL__45__SHIKIMATE__45__5P_c">
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      <species metaid="M_CPD__45__12365_c" id="M_CPD__45__12365_c" name="8-oxo-dGMP" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O8P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 361.2058</p>
            <p>smiles: Nc1nc2n([C@H]3C[C@H](O)[C@@H](COP([O-])([O-])=O)O3)c(=O)[nH]c2c(=O)[nH]1</p>
            <p>inchikey: AQIVLFLYHYFRKU-VPENINKCSA-L</p>
          </body>
        </notes>
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      <species metaid="M_CL__45___e" id="M_CL__45___e" name="chloride" compartment="e" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="Cl">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 35.454</p>
            <p>smiles: [Cl-]</p>
            <p>inchikey: VEXZGXHMUGYJMC-UHFFFAOYSA-M</p>
          </body>
        </notes>
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            <rdf:Description rdf:about="#M_CL__45___e">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/ClH/h1H/p-1"/>
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              </bqbiol:isVersionOf>
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      <species metaid="M_CO__43__2_e" id="M_CO__43__2_e" name="Co2+" compartment="e" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Co">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 58.9321</p>
            <p>smiles: [Co++]</p>
            <p>inchikey: XLJKHNWPARRRJB-UHFFFAOYSA-N</p>
          </body>
        </notes>
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                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/Co/q+2"/>
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      <species metaid="M_N__45__ACETYL__45__SEROTONIN_c" id="M_N__45__ACETYL__45__SEROTONIN_c" name="N-acetyl-serotonin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H14N2O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 218.2518</p>
            <p>smiles: CC(=O)NCCc1c[nH]c2ccc(O)cc12</p>
            <p>inchikey: MVAWJSIDNICKHF-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_N__45__ACETYL__45__SEROTONIN_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C12H14N2O2/c1-8(15)13-5-4-9-7-14-12-3-2-10(16)6-11(9)12/h2-3,6-7,14,16H,4-5H2,1H3,(H,13,15)"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CONIFERYL__45__ALDEHYDE_c" id="M_CONIFERYL__45__ALDEHYDE_c" name="coniferaldehyde" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H10O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 178.1846</p>
            <p>smiles: COc1cc(\C=C\C=O)ccc1O</p>
            <p>inchikey: DKZBBWMURDFHNE-NSCUHMNNSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CONIFERYL__45__ALDEHYDE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C10H10O3/c1-13-10-7-8(3-2-6-11)4-5-9(10)12/h2-7,12H,1H3/b3-2+"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
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        </annotation>
      </species>
      <species metaid="M_CO__43__2_c" id="M_CO__43__2_c" name="Co2+" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Co">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 58.9321</p>
            <p>smiles: [Co++]</p>
            <p>inchikey: XLJKHNWPARRRJB-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CO__43__2_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/Co/q+2"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_COB__45__I__45__ALAMIN_c" id="M_COB__45__I__45__ALAMIN_c" name="cob(I)alamin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C62H88CoN13O14P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1329.3483</p>
            <p>smiles: [H][C@]12[C@H](CC(N)=O)[C@@]3(C)CCC(=O)NC[C@@H](C)OP([O-])(=O)O[C@H]4[C@@H](O)[C@H](O[C@@H]4CO)n4c[n+](c5cc(C)c(C)cc45)[Co-4]456N1C3=C(C)C1=[N+]4C(=CC3=[N+]5C(=C(C)C4=[N+]6[C@]2(C)[C@@](C)(CC(N)=O)[C@@H]4CCC(N)=O)[C@@](C)(CC(N)=O)[C@@H]3CCC(N)=O)C(C)(C)[C@@H]1CCC(N)=O</p>
            <p>inchikey: OMAOKVYASDIYQG-DSRCUDDDSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_COB__45__I__45__ALAMIN_c">
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
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        </annotation>
      </species>
      <species metaid="M_COB__45__I__45__ALAMIN_e" id="M_COB__45__I__45__ALAMIN_e" name="cob(I)alamin" compartment="e" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C62H88CoN13O14P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1329.3483</p>
            <p>smiles: [H][C@]12[C@H](CC(N)=O)[C@@]3(C)CCC(=O)NC[C@@H](C)OP([O-])(=O)O[C@H]4[C@@H](O)[C@H](O[C@@H]4CO)n4c[n+](c5cc(C)c(C)cc45)[Co-4]456N1C3=C(C)C1=[N+]4C(=CC3=[N+]5C(=C(C)C4=[N+]6[C@]2(C)[C@@](C)(CC(N)=O)[C@@H]4CCC(N)=O)[C@@](C)(CC(N)=O)[C@@H]3CCC(N)=O)C(C)(C)[C@@H]1CCC(N)=O</p>
            <p>inchikey: OMAOKVYASDIYQG-DSRCUDDDSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_COB__45__I__45__ALAMIN_e">
              <bqbiol:isVersionOf>
                <rdf:Bag>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__3_e" id="M_CPD__45__3_e" name="molybdate" compartment="e" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="MoO4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 159.94</p>
            <p>smiles: [O-][Mo]([O-])(=O)=O</p>
            <p>inchikey: MEFBJEMVZONFCJ-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__3_e">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/Mo.4O/q;;;2*-1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__3_c" id="M_CPD__45__3_c" name="molybdate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="MoO4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 159.94</p>
            <p>smiles: [O-][Mo]([O-])(=O)=O</p>
            <p>inchikey: MEFBJEMVZONFCJ-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__3_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/Mo.4O/q;;;2*-1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__315_e" id="M_CPD__45__315_e" name="cyanocob(III)alamin" compartment="e" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C63H88CoN14O14P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1355.3652</p>
            <p>smiles: N12C3=C(C4=[N+]5C(C(C)(C)[C@@H]4CCC(N)=O)=CC4=[N+]6C(=C(C7=[N+]8[C@@]([C@@]1([H])[C@@H]([C@@]3(C)CCC(=O)NC[C@@]([H])(C)OP([O-])(=O)O[C@@H]1[C@@H](CO)O[C@H](n3c9c([n+]([Co-3]2568C#N)c3)cc(c(C)c9)C)[C@@H]1O)CC(N)=O)([C@@](C)(CC(N)=O)[C@@H]7CCC(N)=O)C)C)[C@@](C)(CC(N)=O)[C@@H]4CCC(N)=O)C</p>
            <p>inchikey: RMRCNWBMXRMIRW-WZHZPDAFSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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        </annotation>
      </species>
      <species metaid="M_CPD__45__315_c" id="M_CPD__45__315_c" name="cyanocob(III)alamin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C63H88CoN14O14P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1355.3652</p>
            <p>smiles: N12C3=C(C4=[N+]5C(C(C)(C)[C@@H]4CCC(N)=O)=CC4=[N+]6C(=C(C7=[N+]8[C@@]([C@@]1([H])[C@@H]([C@@]3(C)CCC(=O)NC[C@@]([H])(C)OP([O-])(=O)O[C@@H]1[C@@H](CO)O[C@H](n3c9c([n+]([Co-3]2568C#N)c3)cc(c(C)c9)C)[C@@H]1O)CC(N)=O)([C@@](C)(CC(N)=O)[C@@H]7CCC(N)=O)C)C)[C@@](C)(CC(N)=O)[C@@H]4CCC(N)=O)C</p>
            <p>inchikey: RMRCNWBMXRMIRW-WZHZPDAFSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CU__43___c" id="M_CU__43___c" name="Cu+" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="Cu">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 63.545</p>
            <p>smiles: [Cu+]</p>
            <p>inchikey: VMQMZMRVKUZKQL-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CU__43___c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/Cu/q+1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Wound__45__RNA_c" id="M_Wound__45__RNA_c" name="wound RNA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CU__43___e" id="M_CU__43___e" name="Cu+" compartment="e" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="Cu">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 63.545</p>
            <p>smiles: [Cu+]</p>
            <p>inchikey: VMQMZMRVKUZKQL-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CU__43___e">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/Cu/q+1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Unwound__45__RNA_c" id="M_Unwound__45__RNA_c" name="an unwound RNA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CU__43__2_e" id="M_CU__43__2_e" name="Cu2+" compartment="e" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Cu">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 63.545</p>
            <p>smiles: [Cu++]</p>
            <p>inchikey: JPVYNHNXODAKFH-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CU__43__2_e">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/Cu/q+2"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CU__43__2_c" id="M_CU__43__2_c" name="Cu2+" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Cu">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 63.545</p>
            <p>smiles: [Cu++]</p>
            <p>inchikey: JPVYNHNXODAKFH-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CU__43__2_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/Cu/q+2"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Unwound__45__DNA_c" id="M_Unwound__45__DNA_c" name="an unwound double-stranded DNA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_EDTA_e" id="M_EDTA_e" name="EDTA" compartment="e" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H14N2O8">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 290.2279</p>
            <p>smiles: [O-]C(=O)C[NH+](CC[NH+](CC([O-])=O)CC([O-])=O)CC([O-])=O</p>
            <p>inchikey: KCXVZYZYPLLWCC-UHFFFAOYSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_EDTA_e">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C10H16N2O8/c13-7(14)3-11(4-8(15)16)1-2-12(5-9(17)18)6-10(19)20/h1-6H2,(H,13,14)(H,15,16)(H,17,18)(H,19,20)/p-2"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_EDTA_c" id="M_EDTA_c" name="EDTA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H14N2O8">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 290.2279</p>
            <p>smiles: [O-]C(=O)C[NH+](CC[NH+](CC([O-])=O)CC([O-])=O)CC([O-])=O</p>
            <p>inchikey: KCXVZYZYPLLWCC-UHFFFAOYSA-L</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_EDTA_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C10H16N2O8/c13-7(14)3-11(4-8(15)16)1-2-12(5-9(17)18)6-10(19)20/h1-6H2,(H,13,14)(H,15,16)(H,17,18)(H,19,20)/p-2"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_FE__43__2_e" id="M_FE__43__2_e" name="Fe2+" compartment="e" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Fe">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 55.844</p>
            <p>smiles: [Fe++]</p>
            <p>inchikey: CWYNVVGOOAEACU-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_FE__43__2_e">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/Fe/q+2"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Double__45__helix__45__DNA_c" id="M_Double__45__helix__45__DNA_c" name="a double-helix DNA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_FE__43__3_e" id="M_FE__43__3_e" name="Fe3+" compartment="e" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="3" fbc:chemicalFormula="Fe">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 55.843</p>
            <p>smiles: [Fe+3]</p>
            <p>inchikey: VTLYFUHAOXGGBS-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_FE__43__3_e">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/Fe/q+3"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_K__43___c" id="M_K__43___c" name="K+" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="K">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 39.0978</p>
            <p>smiles: [K+]</p>
            <p>inchikey: NPYPAHLBTDXSSS-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_K__43___c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/K/q+1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD1F__45__90_c" id="M_CPD1F__45__90_c" name="kaempferol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H9O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 285.2289</p>
            <p>smiles: Oc1ccc(cc1)-c1oc2cc(O)cc(O)c2c(=O)c1[O-]</p>
            <p>inchikey: IYRMWMYZSQPJKC-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD1F__45__90_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C15H10O6/c16-8-3-1-7(2-4-8)15-14(20)13(19)12-10(18)5-9(17)6-11(12)21-15/h1-6,16-18,20H/p-1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_cis__45__delta19__45__3__45__hydroxyC38__45__ACPs_c" id="M_cis__45__delta19__45__3__45__hydroxyC38__45__ACPs_c" name="a cis-delta19-3-hydroxyC38:1-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_cis__45__delta19__45__3__45__oxo__45__C38__45__ACPs_c" id="M_cis__45__delta19__45__3__45__oxo__45__C38__45__ACPs_c" name="a cis-delta19-3-oxo-C38:1-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CIS__45__ACONITATE_c" id="M_CIS__45__ACONITATE_c" name="cis-aconitate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H3O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 171.0861</p>
            <p>smiles: [O-]C(=O)C\C(=C\C([O-])=O)C([O-])=O</p>
            <p>inchikey: GTZCVFVGUGFEME-IWQZZHSRSA-K</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CIS__45__ACONITATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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        </annotation>
      </species>
      <species metaid="M_CPD1G__45__0_c" id="M_CPD1G__45__0_c" name="1-(2-amino-2-deoxy-&amp;alpha;-D-glucopyranosyl)-1D-myo-inositol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C12H24NO10">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 342.3191</p>
            <p>smiles: [NH3+][C@@H]1[C@@H](O)[C@H](O)[C@@H](CO)O[C@@H]1O[C@H]1[C@H](O)[C@@H](O)[C@H](O)[C@@H](O)[C@H]1O</p>
            <p>inchikey: HEPUIGACZYVUCD-LFIKJOHQSA-O</p>
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        </notes>
        <annotation>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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        </annotation>
      </species>
      <species metaid="M_CPD1G__45__120_c" id="M_CPD1G__45__120_c" name="deacetylmycothiol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C15H29N2O11S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 445.462</p>
            <p>smiles: [NH3+][C@@H](CS)C(=O)N[C@@H]1[C@@H](O)[C@H](O)[C@@H](CO)O[C@@H]1O[C@H]1[C@H](O)[C@@H](O)[C@H](O)[C@@H](O)[C@H]1O</p>
            <p>inchikey: ZGXSCMBZZVXWGF-BSEFFJTHSA-O</p>
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        </notes>
        <annotation>
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        </annotation>
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      <species metaid="M_CPD1G__45__768_c" id="M_CPD1G__45__768_c" name="6-O-mycolyl-trehalose 6-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C90H171O16P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1540.286</p>
            <p>smiles: CCCCCCCCCCCCCCCCCCCCCCCCCCC([C@H](O)CCCCCCCCCCCCCCCC1CC1CCCCCCCCCCC1CC1CCCCCCCCCCCCCCCCCC)C(=O)OC[C@H]1O[C@H](O[C@H]2O[C@H](COP([O-])([O-])=O)[C@@H](O)[C@H](O)[C@H]2O)[C@H](O)[C@@H](O)[C@@H]1O</p>
            <p>inchikey: GXOBNDAJNVBERI-BGZCIIMLSA-L</p>
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        <annotation>
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      <species metaid="M_CPD1G__45__1344_c" id="M_CPD1G__45__1344_c" name="trehalose-mono-mycolate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C90H172O13">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1462.3209</p>
            <p>smiles: CCCCCCCCCCCCCCCCCCCCCCCCCCC([C@H](O)CCCCCCCCCCCCCCCC1CC1CCCCCCCCCCC1CC1CCCCCCCCCCCCCCCCCC)C(=O)OC[C@H]1O[C@H](O[C@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O)[C@H](O)[C@@H](O)[C@@H]1O</p>
            <p>inchikey: HASPJLRXBAGTID-BGZCIIMLSA-N</p>
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        <annotation>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1656.4873</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1578.5222</p>
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      <species metaid="M_ISOCHORISMATE_c" id="M_ISOCHORISMATE_c" name="isochorismate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H8O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 224.168</p>
            <p>smiles: O[C@@H]1[C@@H](OC(=C)C([O-])=O)C=CC=C1C([O-])=O</p>
            <p>inchikey: NTGWPRCCOQCMGE-YUMQZZPRSA-L</p>
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        <annotation>
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            <rdf:Description rdf:about="#M_ISOCHORISMATE_c">
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      <species metaid="M_Protein__45__Red__45__Disulfides_c" id="M_Protein__45__Red__45__Disulfides_c" name="a protein with reduced sulfide groups" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Protein__45__Ox__45__Disulfides_c" id="M_Protein__45__Ox__45__Disulfides_c" name="a protein with oxidized disulfide bonds" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Charged__45__ILE__45__tRNAs_c" id="M_Charged__45__ILE__45__tRNAs_c" name="an L-isoleucyl-[tRNAile]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_5__45__Methylcytosine__45__DNA_c" id="M_5__45__Methylcytosine__45__DNA_c" name="a DNA 5-methylcytosine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_4__45__AMINO__45__BUTYRALDEHYDE_c" id="M_4__45__AMINO__45__BUTYRALDEHYDE_c" name="4-aminobutanal" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C4H10NO">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 88.1278</p>
            <p>smiles: [H]C(=O)CCC[NH3+]</p>
            <p>inchikey: DZQLQEYLEYWJIB-UHFFFAOYSA-O</p>
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        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_4__45__AMINO__45__BUTYRALDEHYDE_c">
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      <species metaid="M_NONAPRENYL__45__4__45__HYDROXYBENZOATE_c" id="M_NONAPRENYL__45__4__45__HYDROXYBENZOATE_c" name="3-nonaprenyl-4-hydroxybenzoate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C52H78O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 751.1739</p>
            <p>smiles: CC(C)=CCC\C(C)=C\CC\C(C)=C\CC\C(C)=C\CC\C(C)=C\CC\C(C)=C\CC\C(C)=C\CC\C(C)=C\CC\C(C)=C\COC(=O)c1ccc(O)cc1</p>
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        </notes>
        <annotation>
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      <species metaid="M_SN__45__GLYCEROL__45__1__45__PHOSPHATE_c" id="M_SN__45__GLYCEROL__45__1__45__PHOSPHATE_c" name="sn-glycerol 1-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C3H7O6P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 170.0589</p>
            <p>smiles: OC[C@H](O)COP([O-])([O-])=O</p>
            <p>inchikey: AWUCVROLDVIAJX-VKHMYHEASA-L</p>
          </body>
        </notes>
        <annotation>
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      <species metaid="M_SN__45__GERANYLGERANYLGLYCERYL__45__1__45__PHOSPHATE_c" id="M_SN__45__GERANYLGERANYLGLYCERYL__45__1__45__PHOSPHATE_c" name="3-(O-geranylgeranyl)-sn-glycerol 1-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C23H39O6P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 442.527</p>
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      <species metaid="M_2__45__KETO__45__3__45__DEOXY__45__6__45__P__45__GLUCONATE_c" id="M_2__45__KETO__45__3__45__DEOXY__45__6__45__P__45__GLUCONATE_c" name="2-dehydro-3-deoxy-D-gluconate 6-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C6H8O9P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 255.0977</p>
            <p>smiles: O[C@H](COP([O-])([O-])=O)[C@@H](O)CC(=O)C([O-])=O</p>
            <p>inchikey: OVPRPPOVAXRCED-WVZVXSGGSA-K</p>
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        <annotation>
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      <species metaid="M_Protein__45__S__45__farnesyl__45__L__45__cysteines_c" id="M_Protein__45__S__45__farnesyl__45__L__45__cysteines_c" name="a [protein] S-farnesyl-L-cysteine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_2__45__OXOSUCCINAMATE_c" id="M_2__45__OXOSUCCINAMATE_c" name="2-oxosuccinamate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H4NO4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 130.0794</p>
            <p>smiles: NC(=O)CC(=O)C([O-])=O</p>
            <p>inchikey: ONGPAWNLFDCRJE-UHFFFAOYSA-M</p>
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        </notes>
        <annotation>
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      <species metaid="M_L__45__1__45__PHOSPHATIDYL__45__GLYCEROL_c" id="M_L__45__1__45__PHOSPHATIDYL__45__GLYCEROL_c" name="an L-1-phosphatidyl-sn-glycerol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_DAMP_c" id="M_DAMP_c" name="dAMP" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H12N5O6P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 329.207</p>
            <p>smiles: Nc1ncnc2n(cnc12)[C@H]1C[C@H](O)[C@@H](COP([O-])([O-])=O)O1</p>
            <p>inchikey: KHWCHTKSEGGWEX-RRKCRQDMSA-L</p>
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      <species metaid="M_K__43___e" id="M_K__43___e" name="K+" compartment="e" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="K">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 39.0978</p>
            <p>smiles: [K+]</p>
            <p>inchikey: NPYPAHLBTDXSSS-UHFFFAOYSA-N</p>
          </body>
        </notes>
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                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/K/q+1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Light_e" id="M_Light_e" name="h&amp;nu;" compartment="e" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: *</p>
          </body>
        </notes>
      </species>
      <species metaid="M_MYRICETIN_c" id="M_MYRICETIN_c" name="myricetin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H9O8">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 317.2277</p>
            <p>smiles: Oc1cc(O)c2c(c1)oc(-c1cc(O)c(O)c(O)c1)c([O-])c2=O</p>
            <p>inchikey: IKMDFBPHZNJCSN-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_MYRICETIN_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C15H10O8/c16-6-3-7(17)11-10(4-6)23-15(14(22)13(11)21)5-1-8(18)12(20)9(19)2-5/h1-4,16-20,22H/p-1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_MG__43__2_c" id="M_MG__43__2_c" name="Mg2+" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Mg">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 24.304</p>
            <p>smiles: [Mg++]</p>
            <p>inchikey: JLVVSXFLKOJNIY-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_MG__43__2_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/Mg/q+2"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_MG__43__2_e" id="M_MG__43__2_e" name="Mg2+" compartment="e" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Mg">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 24.304</p>
            <p>smiles: [Mg++]</p>
            <p>inchikey: JLVVSXFLKOJNIY-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_MG__43__2_e">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/Mg/q+2"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_MN__43__2_c" id="M_MN__43__2_c" name="Mn2+" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Mn">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 54.93695</p>
            <p>smiles: [Mn++]</p>
            <p>inchikey: WAEMQWOKJMHJLA-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_MN__43__2_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/Mn/q+2"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_MN__43__2_e" id="M_MN__43__2_e" name="Mn2+" compartment="e" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Mn">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 54.93695</p>
            <p>smiles: [Mn++]</p>
            <p>inchikey: WAEMQWOKJMHJLA-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_MN__43__2_e">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/Mn/q+2"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__8652_c" id="M_CPD__45__8652_c" name="leucodopachrome" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H8NO4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 194.1647</p>
            <p>smiles: Oc1cc2C[C@H](Nc2cc1O)C([O-])=O</p>
            <p>inchikey: JDWYRSDDJVCWPB-LURJTMIESA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__8652_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C9H9NO4/c11-7-2-4-1-6(9(13)14)10-5(4)3-8(7)12/h2-3,6,10-12H,1H2,(H,13,14)/p-1/t6-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_NA__43___c" id="M_NA__43___c" name="Na+" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="Na">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 22.98922</p>
            <p>smiles: [Na+]</p>
            <p>inchikey: FKNQFGJONOIPTF-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_NA__43___c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/Na/q+1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_NA__43___e" id="M_NA__43___e" name="Na+" compartment="e" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="Na">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 22.98922</p>
            <p>smiles: [Na+]</p>
            <p>inchikey: FKNQFGJONOIPTF-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_NA__43___e">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/Na/q+1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_NITRATE_e" id="M_NITRATE_e" name="nitrate" compartment="e" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="NO3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 62.0054</p>
            <p>smiles: [O-][N+]([O-])=O</p>
            <p>inchikey: NHNBFGGVMKEFGY-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_NITRATE_e">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/NO3/c2-1(3)4/q-1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__8678_c" id="M_CPD__45__8678_c" name="9(S)-HPOTE" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C18H29O4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 309.421</p>
            <p>smiles: CC\C=C/C\C=C/C=C/[C@H](CCCCCCCC([O-])=O)OO</p>
            <p>inchikey: RWKJTIHNYSIIHW-MEBVTJQTSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__8678_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C18H30O4/c1-2-3-4-5-6-8-11-14-17(22-21)15-12-9-7-10-13-16-18(19)20/h3-4,6,8,11,14,17,21H,2,5,7,9-10,12-13,15-16H2,1H3,(H,19,20)/p-1/b4-3-,8-6-,14-11+/t17-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_OXYGEN__45__MOLECULE_e" id="M_OXYGEN__45__MOLECULE_e" name="oxygen" compartment="e" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 31.9988</p>
            <p>smiles: O=O</p>
            <p>inchikey: MYMOFIZGZYHOMD-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_OXYGEN__45__MOLECULE_e">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/O2/c1-2"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__18379_c" id="M_CPD__45__18379_c" name="1-myristoylglycerol 3-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C17H33O7P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 380.4146</p>
            <p>smiles: CCCCCCCCCCCCCC(=O)OC[C@@H](O)COP([O-])([O-])=O</p>
            <p>inchikey: FAZBDRGXCKPVJU-MRXNPFEDSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__18379_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C17H35O7P/c1-2-3-4-5-6-7-8-9-10-11-12-13-17(19)23-14-16(18)15-24-25(20,21)22/h16,18H,2-15H2,1H3,(H2,20,21,22)/p-2/t16-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_SULFATE_e" id="M_SULFATE_e" name="sulfate" compartment="e" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O4S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 96.064</p>
            <p>smiles: [O-]S([O-])(=O)=O</p>
            <p>inchikey: QAOWNCQODCNURD-UHFFFAOYSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_SULFATE_e">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/H2O4S/c1-5(2,3)4/h(H2,1,2,3,4)/p-2"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__18380_c" id="M_CPD__45__18380_c" name="1-myristoyl-2-palmitoleoyl phosphatidate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C33H61O8P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 616.8075</p>
            <p>smiles: CCCCCCCCCCCCCC(=O)OC[C@H](COP([O-])([O-])=O)OC(=O)CCCCCCC\C=C\CCCCCC</p>
            <p>inchikey: ALDWDBNWDITVID-XSWVMQTGSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__18380_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C33H63O8P/c1-3-5-7-9-11-13-15-16-18-20-22-24-26-28-33(35)41-31(30-40-42(36,37)38)29-39-32(34)27-25-23-21-19-17-14-12-10-8-6-4-2/h13,15,31H,3-12,14,16-30H2,1-2H3,(H2,36,37,38)/p-2/b15-13+/t31-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_THIAMINE_e" id="M_THIAMINE_e" name="thiamine" compartment="e" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C12H17N4OS">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 265.354</p>
            <p>smiles: Cc1c(CCO)sc[n+]1Cc1cnc(C)nc1N</p>
            <p>inchikey: JZRWCGZRTZMZEH-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_THIAMINE_e">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C12H17N4OS/c1-8-11(3-4-17)18-7-16(8)6-10-5-14-9(2)15-12(10)13/h5,7,17H,3-4,6H2,1-2H3,(H2,13,14,15)/q+1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_THIAMINE_c" id="M_THIAMINE_c" name="thiamine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C12H17N4OS">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 265.354</p>
            <p>smiles: Cc1c(CCO)sc[n+]1Cc1cnc(C)nc1N</p>
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        </notes>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 58.0791</p>
            <p>smiles: CC(C)=O</p>
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        </notes>
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        <notes>
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            <p>mass: 18.0153</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 65.408</p>
            <p>smiles: [Zn++]</p>
            <p>inchikey: PTFCDOFLOPIGGS-UHFFFAOYSA-N</p>
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        </notes>
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              <bqbiol:isVersionOf>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 195.1479</p>
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            <p>inchikey: RGHNJXZEOKUKBD-RSJOWCBRSA-M</p>
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      <species metaid="M_Ferrihemoglobins_c" id="M_Ferrihemoglobins_c" name="a ferrihemoglobin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
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      <species metaid="M_Ferrohemoglobins_c" id="M_Ferrohemoglobins_c" name="a ferrohemoglobin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
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          <body xmlns="http://www.w3.org/1999/xhtml"/>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
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            <p>smiles: C[C@H](CNC(N)=O)C([O-])=O</p>
            <p>inchikey: PHENTZNALBMCQD-GSVOUGTGSA-M</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 103.1198</p>
            <p>smiles: C[C@H](C[NH3+])C([O-])=O</p>
            <p>inchikey: QCHPKSFMDHPSNR-GSVOUGTGSA-N</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1670.5139</p>
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        <notes>
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            <p>mass: 1592.5488</p>
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            <p>mass: 1668.498</p>
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        <notes>
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            <p>mass: 1590.5329</p>
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        <notes>
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            <p>mass: 1590.5329</p>
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        </annotation>
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      <species metaid="M_CPD1G__45__774_c" id="M_CPD1G__45__774_c" name="6-O-trans-keto-mycolyl-trehalose 6-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C98H187O17P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1668.498</p>
            <p>smiles: [H]C(C)(CCCCCCCCCCCCCCCCC)C(=O)CCCCCCCCCCCCCCCCC([H])(C)C1([H])CC1([H])CCCCCCCCCCCCCCCC[C@@]([H])(O)C([H])(CCCCCCCCCCCCCCCCCCCCCCCCCC)C(=O)OC[C@@]1([H])O[C@]([H])(O[C@@]2([H])O[C@]([H])(COP([O-])([O-])=O)[C@@]([H])(O)[C@]([H])(O)[C@@]2([H])O)[C@]([H])(O)[C@@]([H])(O)[C@]1([H])O</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_3__45__oxo__45__behenoyl__45__ACPs_c" id="M_3__45__oxo__45__behenoyl__45__ACPs_c" name="a 3-oxo-behenoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_L__45__1__45__PHOSPHATIDYL__45__GLYCEROL__45__P_c" id="M_L__45__1__45__PHOSPHATIDYL__45__GLYCEROL__45__P_c" name="1-(3-sn-phosphatidyl)-sn-glycerol 3-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C8H11O13P2R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: O[C@@H](COP([O-])([O-])=O)COP([O-])(=O)OC[C@@H](COC([*])=O)OC([*])=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_PHENYLACETATE_c" id="M_PHENYLACETATE_c" name="phenylacetate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H7O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 135.1405</p>
            <p>smiles: [O-]C(=O)Cc1ccccc1</p>
            <p>inchikey: WLJVXDMOQOGPHL-UHFFFAOYSA-M</p>
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            <rdf:Description rdf:about="#M_PHENYLACETATE_c">
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      <species metaid="M_ZN__43__2_c" id="M_ZN__43__2_c" name="Zn2+" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="2" fbc:chemicalFormula="Zn">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 65.408</p>
            <p>smiles: [Zn++]</p>
            <p>inchikey: PTFCDOFLOPIGGS-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_ZN__43__2_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/Zn/q+2"/>
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      <species metaid="M_BIOMASS_e" id="M_BIOMASS_e" name="BIOMASS" compartment="e" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_5__45__PHOSPHORIBOSYL__45__N__45__FORMYLGLYCINEAMIDINE_c" id="M_5__45__PHOSPHORIBOSYL__45__N__45__FORMYLGLYCINEAMIDINE_c" name="2-(formamido)-N1-(5-phospho-&amp;beta;-D-ribosyl)acetamidine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H15N3O8P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 312.1943</p>
            <p>smiles: O[C@H]1[C@@H](O)[C@H](NC(=[NH2+])CNC=O)O[C@@H]1COP([O-])([O-])=O</p>
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        <annotation>
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        </annotation>
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      <species metaid="M_5__45__P__45__RIBOSYL__45__N__45__FORMYLGLYCINEAMIDE_c" id="M_5__45__P__45__RIBOSYL__45__N__45__FORMYLGLYCINEAMIDE_c" name="N2-formyl-N1-(5-phospho-&amp;beta;-D-ribosyl)glycinamide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H13N2O9P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 312.1717</p>
            <p>smiles: O[C@H]1[C@@H](O)C(NC(=O)CNC=O)O[C@@H]1COP([O-])([O-])=O</p>
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      <species metaid="M_ILE__45__tRNAs_c" id="M_ILE__45__tRNAs_c" name="a tRNAile" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      <species metaid="M_BCAA__45__dehydrogenase__45__3MB__45__DH__45__lipoyl_c" id="M_BCAA__45__dehydrogenase__45__3MB__45__DH__45__lipoyl_c" name="a [apo BCAA dehydrogenase E2 protein] N6-S-[3-methylbutanoyl]dihydrolipoyl-L-lysine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H23O2S2R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      </species>
      <species metaid="M_HYDROXY__45__METHYL__45__BUTENYL__45__DIP_c" id="M_HYDROXY__45__METHYL__45__BUTENYL__45__DIP_c" name="(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C5H9O8P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 259.0693</p>
            <p>smiles: C\C(CO)=C/COP([O-])(=O)OP([O-])([O-])=O</p>
            <p>inchikey: MDSIZRKJVDMQOQ-GORDUTHDSA-K</p>
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      <species metaid="M_CPD__45__466_c" id="M_CPD__45__466_c" name="(S)-3-amino-2-methylpropanoate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 103.1198</p>
            <p>smiles: C[C@@H](C[NH3+])C([O-])=O</p>
            <p>inchikey: QCHPKSFMDHPSNR-VKHMYHEASA-N</p>
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        <annotation>
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      <species metaid="M_CPD__45__14736_c" id="M_CPD__45__14736_c" name="L-kynurenine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N2O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 208.2139</p>
            <p>smiles: Nc1ccccc1C(=O)C[C@H]([NH3+])C([O-])=O</p>
            <p>inchikey: YGPSJZOEDVAXAB-QMMMGPOBSA-N</p>
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        </notes>
        <annotation>
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      <species metaid="M_CPD__45__506_c" id="M_CPD__45__506_c" name="D-myo-inositol (1,3,4,5)-tetrakisphosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C6H8O18P4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 492.0164</p>
            <p>smiles: O[C@H]1[C@@H](OP([O-])([O-])=O)[C@H](O)[C@@H](OP([O-])([O-])=O)[C@H](OP([O-])([O-])=O)[C@H]1OP([O-])([O-])=O</p>
            <p>inchikey: CIPFCGZLFXVXBG-CNWJWELYSA-F</p>
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        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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      <species metaid="M_CPD__45__505_c" id="M_CPD__45__505_c" name="D-myo-inositol (1,3,4,6)-tetrakisphosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C6H8O18P4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 492.0164</p>
            <p>smiles: O[C@H]1[C@H](OP([O-])([O-])=O)[C@@H](OP([O-])([O-])=O)[C@@H](O)[C@@H](OP([O-])([O-])=O)[C@@H]1OP([O-])([O-])=O</p>
            <p>inchikey: ZAWIXNGTTZTBKV-JMVOWJSSSA-F</p>
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      </species>
      <species metaid="M_INOSITOL__45__1__45__3__45__4__45__TRIPHOSPHATE_c" id="M_INOSITOL__45__1__45__3__45__4__45__TRIPHOSPHATE_c" name="D-myo-inositol (1,3,4)-trisphosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-6" fbc:chemicalFormula="C6H9O15P3">
        <notes>
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            <p>mass: 414.0512</p>
            <p>smiles: O[C@@H]1[C@@H](O)[C@H](OP([O-])([O-])=O)[C@@H](OP([O-])([O-])=O)[C@@H](O)[C@H]1OP([O-])([O-])=O</p>
            <p>inchikey: MMWCIQZXVOZEGG-MLQGYMEPSA-H</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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              <bqbiol:isVersionOf>
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                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C6H15O15P3/c7-1-2(8)5(20-23(13,14)15)6(21-24(16,17)18)3(9)4(1)19-22(10,11)12/h1-9H,(H2,10,11,12)(H2,13,14,15)(H2,16,17,18)/p-6/t1-,2-,3+,4+,5+,6+/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__178_c" id="M_CPD__45__178_c" name="D-myo-inositol (3,4,5,6)-tetrakisphosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C6H8O18P4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 492.0164</p>
            <p>smiles: O[C@H]1[C@@H](O)[C@H](OP([O-])([O-])=O)[C@@H](OP([O-])([O-])=O)[C@H](OP([O-])([O-])=O)[C@H]1OP([O-])([O-])=O</p>
            <p>inchikey: MRVYFOANPDTYBY-UZAAGFTCSA-F</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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              <bqbiol:isVersionOf>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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        </annotation>
      </species>
      <species metaid="M_SINAPOYL__45__COA_c" id="M_SINAPOYL__45__COA_c" name="sinapoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C32H42N7O20P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 969.699</p>
            <p>smiles: COc1cc(\C=C\C(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2OP([O-])([O-])=O)n2cnc3c(N)ncnc23)cc(OC)c1O</p>
            <p>inchikey: RBFUWESMWRUGFY-GSNIOFLCSA-J</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_SINAPOYL__45__COA_c">
              <bqbiol:isVersionOf>
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                </rdf:Bag>
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        </annotation>
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      <species metaid="M_FRU1P_c" id="M_FRU1P_c" name="&amp;beta;-D-fructofuranose 1-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__8890_c" id="M_CPD__45__8890_c" name="betanidin quinone" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C18H12N2O8">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 384.2976</p>
            <p>smiles: [O-]C(=O)[C@@H]1CC2=CC(=O)C(=O)C=C2N1C=CC1=CC(=[NH+][C@@H](C1)C([O-])=O)C([O-])=O</p>
            <p>inchikey: WAVPHGICHZOYMQ-AAEUAGOBSA-L</p>
          </body>
        </notes>
        <annotation>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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        </annotation>
      </species>
      <species metaid="M_CPD__45__12199_c" id="M_CPD__45__12199_c" name="3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C30H40N7O19P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 927.663</p>
            <p>smiles: CC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12)[C@@H](O)C(=O)NCCC(=O)NCCSC(=O)C[C@H](O)c1ccc(O)cc1</p>
            <p>inchikey: VDDFXUMTXCQMFM-UGDQNKSBSA-J</p>
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        </notes>
        <annotation>
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      <species metaid="M_CPD__45__8653_c" id="M_CPD__45__8653_c" name="betanidin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C18H14N2O8">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 386.3135</p>
            <p>smiles: [H]C(=CN1[C@@H](Cc2cc(O)c(O)cc12)C([O-])=O)C1=CC(=[NH+][C@@H](C1)C([O-])=O)C([O-])=O</p>
            <p>inchikey: BBJUSJOGHYQDQX-WODDMCJRSA-L</p>
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        </notes>
        <annotation>
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                </rdf:Bag>
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      <species metaid="M_CPD__45__10600_c" id="M_CPD__45__10600_c" name="4-hydroxybenzoyl-acetyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C30H38N7O19P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 925.647</p>
            <p>smiles: [H][C@](O)(C([O-])=[NH+]CCC([O-])=[NH+]CCSC(=O)CC(=O)c1ccc(O)cc1)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@@]1([H])O[C@@]([H])(n2cnc3c(N)ncnc23)[C@]([H])(O)[C@]1([H])OP([O-])([O-])=O</p>
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        </notes>
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                </rdf:Bag>
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      <species metaid="M_SINAPYL__45__ALCOHOL_c" id="M_SINAPYL__45__ALCOHOL_c" name="sinapyl alcohol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H14O4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 210.2265</p>
            <p>smiles: COc1cc(\C=C\CO)cc(OC)c1O</p>
            <p>inchikey: LZFOPEXOUVTGJS-ONEGZZNKSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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      <species metaid="M_D__45__TRYPTOPHAN_c" id="M_D__45__TRYPTOPHAN_c" name="D-tryptophan" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H12N2O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 204.2252</p>
            <p>smiles: [NH3+][C@H](Cc1c[nH]c2ccccc12)C([O-])=O</p>
            <p>inchikey: QIVBCDIJIAJPQS-SECBINFHSA-N</p>
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        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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      <species metaid="M_CPD__45__10488_c" id="M_CPD__45__10488_c" name="N-formyl-D-kynurenine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H12N2O4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 236.224</p>
            <p>smiles: [H]C(=O)Nc1ccccc1C(=O)C[C@@H]([NH3+])C([O-])=O</p>
            <p>inchikey: BYHJHXPTQMMKCA-MRVPVSSYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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      <species metaid="M_CPD__45__676_c" id="M_CPD__45__676_c" name="trans-caffeate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H7O4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 179.15</p>
            <p>smiles: Oc1ccc(\C=C\C([O-])=O)cc1O</p>
            <p>inchikey: QAIPRVGONGVQAS-DUXPYHPUSA-M</p>
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                </rdf:Bag>
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      <species metaid="M_CAFFEOYL__45__COA_c" id="M_CAFFEOYL__45__COA_c" name="trans-caffeoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C30H38N7O19P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 925.647</p>
            <p>smiles: [H]C(=CC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12)c1ccc(O)c(O)c1</p>
            <p>inchikey: QHRGJMIMHCLHRG-ZSELIEHESA-J</p>
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      <species metaid="M_CPD0__45__1425_c" id="M_CPD0__45__1425_c" name="dimyristoyl phosphatidate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C31H59O8P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 590.7702</p>
            <p>smiles: CCCCCCCCCCCCCC(=O)OCC(COP([O-])([O-])=O)OC(=O)CCCCCCCCCCCCC</p>
            <p>inchikey: OZSITQMWYBNPMW-UHFFFAOYSA-L</p>
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      <species metaid="M_TETRADECANOYL__45__COA_c" id="M_TETRADECANOYL__45__COA_c" name="myristoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H58N7O17P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 973.86</p>
            <p>smiles: CCCCCCCCCCCCCC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
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        </annotation>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 618.8234</p>
            <p>smiles: CCCCCCCCCCCCCCCC(=O)OC[C@H](COP([O-])([O-])=O)OC(=O)CCCCCCCCCCCCC</p>
            <p>inchikey: GLOXZZHEZYKXNV-WJOKGBTCSA-L</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 315.3841</p>
            <p>smiles: [H][C@@]12C[C@]3(CC1=C)[C@@H](C([O-])=O)[C@]1([H])[C@]4(C)CCC[C@@]1(OC4=O)[C@]3([H])CC2</p>
            <p>inchikey: MHVYWTXXZIFXDT-PKZSZHAESA-M</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 331.3835</p>
            <p>smiles: [H][C@@]12C[C@]3(CC1=C)[C@@H](C([O-])=O)[C@]1([H])[C@@]4(C)C[C@@H](O)C[C@@]1(OC4=O)[C@]3([H])CC2</p>
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        </notes>
        <annotation>
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      <species metaid="M_cis__45__delta11__45__3__45__hydroxymelissoyl__45__ACPs_c" id="M_cis__45__delta11__45__3__45__hydroxymelissoyl__45__ACPs_c" name="a cis-delta11-3-hydroxyC30:1-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_cis__45__delta11__45__3__45__oxo__45__melissoyl__45__ACPs_c" id="M_cis__45__delta11__45__3__45__oxo__45__melissoyl__45__ACPs_c" name="a cis-delta11-3-oxo-C30:1-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_cis__45__delta9__45__3__45__hydroxymontanoyl__45__ACPs_c" id="M_cis__45__delta9__45__3__45__hydroxymontanoyl__45__ACPs_c" name="a cis-delta9-3-hydroxyC28:1-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_cis__45__delta9__45__3__45__oxo__45__montanoyl__45__ACPs_c" id="M_cis__45__delta9__45__3__45__oxo__45__montanoyl__45__ACPs_c" name="a cis-delta9-3-oxo-C28:1-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_cis__45__19__45__CP__45__37__45__Mex__45__38__45__Me__45__C59__45__ACPs_c" id="M_cis__45__19__45__CP__45__37__45__Mex__45__38__45__Me__45__C59__45__ACPs_c" name="a cis-methoxy-C59-meroacyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_cis__45__D19__45__37__45__MOH__45__38__45__Me__45__C57__45__1__45__ACPs_c" id="M_cis__45__D19__45__37__45__MOH__45__38__45__Me__45__C57__45__1__45__ACPs_c" name="a cis-delta19-37-methoxy-38-methyl-C57:1-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_cis__45__delta13__45__3__45__hydroxylacceroyl__45__ACPs_c" id="M_cis__45__delta13__45__3__45__hydroxylacceroyl__45__ACPs_c" name="a cis-delta13-3-hydroxyC32:1-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_cis__45__delta13__45__3__45__oxo__45__lacceroyl__45__ACPs_c" id="M_cis__45__delta13__45__3__45__oxo__45__lacceroyl__45__ACPs_c" name="a cis-delta13-3-oxo-C32:1-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_cis__45__delta21__45__3__45__oxo__45__C40__45__ACPs_c" id="M_cis__45__delta21__45__3__45__oxo__45__C40__45__ACPs_c" name="a cis-delta21-3-oxo-C40:1-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_cis__45__delta21__45__3__45__hydroxyC40__45__ACPs_c" id="M_cis__45__delta21__45__3__45__hydroxyC40__45__ACPs_c" name="a cis-delta21-3-hydroxyC40:1-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_R__45__3__45__hydroxyarachidoyl__45__ACPs_c" id="M_R__45__3__45__hydroxyarachidoyl__45__ACPs_c" name="a (3R)-3-hydroxyarachidoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_trans__45__delta2__45__arachidoyl__45__ACPs_c" id="M_trans__45__delta2__45__arachidoyl__45__ACPs_c" name="a trans-eicos-2-enoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_3__45__oxo__45__arachidoyl__45__ACPs_c" id="M_3__45__oxo__45__arachidoyl__45__ACPs_c" name="a 3-oxo-arachidoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_2__45__DEOXYRIBOSE_c" id="M_2__45__DEOXYRIBOSE_c" name="2&apos;-deoxyribose" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H10O4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 134.1305</p>
            <p>smiles: [H]C(=O)CC(O)C(O)CO</p>
            <p>inchikey: ASJSAQIRZKANQN-UHFFFAOYSA-N</p>
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        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_2__45__DEOXYRIBOSE_c">
              <bqbiol:isVersionOf>
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      <species metaid="M_DEOXY__45__RIBOSE__45__5P_c" id="M_DEOXY__45__RIBOSE__45__5P_c" name="2-deoxy-D-ribose 5-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H9O7P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 212.0956</p>
            <p>smiles: O[C@H](COP([O-])([O-])=O)[C@@H](O)CC=O</p>
            <p>inchikey: ALQNUOMIEBHXQG-CRCLSJGQSA-L</p>
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      <species metaid="M_CPD__45__15163_c" id="M_CPD__45__15163_c" name="prop-2-ynal" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H2O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 54.0474</p>
            <p>smiles: O=CC#C</p>
            <p>inchikey: IJNJLGFTSIAHEA-UHFFFAOYSA-N</p>
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        </notes>
        <annotation>
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      <species metaid="M_CPD66__45__39_c" id="M_CPD66__45__39_c" name="a 2,3,4-saturated fatty acid" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H6O2R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [O-]C(=O)CCC[*]</p>
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      <species metaid="M_CPD__45__661_c" id="M_CPD__45__661_c" name="propynoate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C3HO2">
        <notes>
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            <p>mass: 69.0394</p>
            <p>smiles: [O-]C(=O)C#C</p>
            <p>inchikey: UORVCLMRJXCDCP-UHFFFAOYSA-M</p>
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      </species>
      <species metaid="M_Charged__45__PHE__45__tRNAs_c" id="M_Charged__45__PHE__45__tRNAs_c" name="an L-phenylalanyl-[tRNAphe]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_D__45__GLUCURONOLACTONE_c" id="M_D__45__GLUCURONOLACTONE_c" name="D-glucurono-6,3-lactone" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H8O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 176.1241</p>
            <p>smiles: [H][C@@]1(OC(=O)[C@@H](O)[C@H]1O)[C@@H](O)C=O</p>
            <p>inchikey: UYUXSRADSPPKRZ-SKNVOMKLSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_D__45__GLUCURONOLACTONE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_D__45__GLUCARATE_c" id="M_D__45__GLUCARATE_c" name="D-glucarate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H8O8">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 208.124</p>
            <p>smiles: O[C@@H]([C@H](O)[C@@H](O)C([O-])=O)[C@H](O)C([O-])=O</p>
            <p>inchikey: DSLZVSRJTYRBFB-LLEIAEIESA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_D__45__GLUCARATE_c">
              <bqbiol:isVersionOf>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_4__45__AMINO__45__4__45__DEOXYCHORISMATE_c" id="M_4__45__AMINO__45__4__45__DEOXYCHORISMATE_c" name="4-amino-4-deoxychorismate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H10NO5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 224.1906</p>
            <p>smiles: [NH3+][C@@H]1C=CC(=C[C@H]1OC(=C)C([O-])=O)C([O-])=O</p>
            <p>inchikey: OIUJHGOLFKDBSU-HTQZYQBOSA-M</p>
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        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_4__45__AMINO__45__4__45__DEOXYCHORISMATE_c">
              <bqbiol:isVersionOf>
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              </bqbiol:isVersionOf>
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      <species metaid="M_PHE__45__tRNAs_c" id="M_PHE__45__tRNAs_c" name="a tRNAphe" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_DEOXYINOSINE_c" id="M_DEOXYINOSINE_c" name="2&apos;-deoxyinosine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N4O4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 252.2267</p>
            <p>smiles: OC[C@H]1O[C@H](C[C@@H]1O)n1cnc2c1nc[nH]c2=O</p>
            <p>inchikey: VGONTNSXDCQUGY-RRKCRQDMSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_DEOXYINOSINE_c">
              <bqbiol:isVersionOf>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_ENOL__45__PHENYLPYRUVATE_c" id="M_ENOL__45__PHENYLPYRUVATE_c" name="enol-phenylpyruvate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H7O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 163.1506</p>
            <p>smiles: OC(=Cc1ccccc1)C([O-])=O</p>
            <p>inchikey: DEDGUGJNLNLJSR-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_ENOL__45__PHENYLPYRUVATE_c">
              <bqbiol:isVersionOf>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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        </annotation>
      </species>
      <species metaid="M_DEOXYADENOSINE_c" id="M_DEOXYADENOSINE_c" name="2&apos;-deoxyadenosine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H13N5O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 251.2419</p>
            <p>smiles: Nc1ncnc2n(cnc12)[C@H]1C[C@H](O)[C@@H](CO)O1</p>
            <p>inchikey: OLXZPDWKRNYJJZ-RRKCRQDMSA-N</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_DEOXYADENOSINE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C10H13N5O3/c11-9-8-10(13-3-12-9)15(4-14-8)7-1-5(17)6(2-16)18-7/h3-7,16-17H,1-2H2,(H2,11,12,13)/t5-,6+,7+/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
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        </annotation>
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      <species metaid="M_CPD0__45__2231_c" id="M_CPD0__45__2231_c" name="dIDP" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H11N4O10P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 409.1643</p>
            <p>smiles: O[C@H]1C[C@@H](O[C@@H]1COP([O-])(=O)OP([O-])([O-])=O)n1cnc2c1nc[nH]c2=O</p>
            <p>inchikey: BKUSIKGSPSFQAC-RRKCRQDMSA-K</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD0__45__2231_c">
              <bqbiol:isVersionOf>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_UDP__45__GLUCURONATE_c" id="M_UDP__45__GLUCURONATE_c" name="UDP-&amp;alpha;-D-glucuronate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C15H19N2O18P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 577.2631</p>
            <p>smiles: O[C@@H]1[C@@H](COP([O-])(=O)OP([O-])(=O)O[C@H]2O[C@@H]([C@@H](O)[C@H](O)[C@H]2O)C([O-])=O)O[C@H]([C@@H]1O)n1ccc(=O)[nH]c1=O</p>
            <p>inchikey: HDYANYHVCAPMJV-LXQIFKJMSA-K</p>
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        </notes>
        <annotation>
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              <bqbiol:isVersionOf>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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        </annotation>
      </species>
      <species metaid="M_3__45__KETOLACTOSE_c" id="M_3__45__KETOLACTOSE_c" name="3&apos;-ketolactose" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H20O11">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 340.2806</p>
            <p>smiles: OC[C@H]1O[C@@H](O[C@H]2[C@H](O)[C@@H](O)[C@H](O)O[C@@H]2CO)[C@H](O)C(=O)[C@H]1O</p>
            <p>inchikey: HKKHTABTHSUDBP-WMIWJMKMSA-N</p>
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        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_3__45__KETOLACTOSE_c">
              <bqbiol:isVersionOf>
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                </rdf:Bag>
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        </annotation>
      </species>
      <species metaid="M_CPD__45__1242_c" id="M_CPD__45__1242_c" name="3-keto-&amp;beta;-D-galactose" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 178.14</p>
            <p>smiles: OC[C@H]1O[C@@H](O)[C@H](O)C(=O)[C@H]1O</p>
            <p>inchikey: APIQNBNBIICCON-FKMSRSAHSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__1242_c">
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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        </annotation>
      </species>
      <species metaid="M_DEOXYNUCLEOTIDESM_c" id="M_DEOXYNUCLEOTIDESM_c" name="(deoxynucleotides)(m)" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/>
      <species metaid="M_DOLICHOL_c" id="M_DOLICHOL_c" name="a dolichol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_1__45__PHOSPHATIDYL__45__1D__45__MYO__45__INOSITOL__45__5__45__PHOSPHA_c" id="M_1__45__PHOSPHATIDYL__45__1D__45__MYO__45__INOSITOL__45__5__45__PHOSPHA_c" name="a 1-phosphatidyl-1D-myo-inositol 5-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C11H15O16P2R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [H][C@@](COC([*])=O)(COP([O-])(=O)O[C@@H]1[C@H](O)[C@H](O)[C@@H](O)[C@H](OP([O-])([O-])=O)[C@H]1O)OC([*])=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_CPD__45__224_c" id="M_CPD__45__224_c" name="a dolichyl diphosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD1F__45__140_c" id="M_CPD1F__45__140_c" name="gibberellin A20" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H23O5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 331.3835</p>
            <p>smiles: [H][C@@]12CC[C@]3(O)C[C@]1(CC3=C)[C@@H](C([O-])=O)[C@]1([H])[C@@]3(C)CCC[C@@]21OC3=O</p>
            <p>inchikey: OXFPYCSNYOFUCH-KQBHUUJHSA-M</p>
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        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_CPD1F__45__140_c">
              <bqbiol:isVersionOf>
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                </rdf:Bag>
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        </annotation>
      </species>
      <species metaid="M_CPD__45__236_c" id="M_CPD__45__236_c" name="gibberellin A29" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H23O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 347.3829</p>
            <p>smiles: [H][C@@]12CC[C@]3(O)C[C@]1(CC3=C)[C@@H](C([O-])=O)[C@]1([H])[C@@]3(C)C[C@@H](O)C[C@@]21OC3=O</p>
            <p>inchikey: BKBYHSYZKIAJDA-WWSAFQOPSA-M</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1122.062</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1104.047</p>
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        <notes>
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            <p>mass: 1106.062</p>
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        <notes>
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            <p>mass: 79.905</p>
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            <p>mass: 1104.047</p>
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        <notes>
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            <p>mass: 1102.031</p>
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            <p>mass: 1074.8289</p>
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            <p>mass: 1598.9374</p>
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            <p>mass: 176.214</p>
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            <rdf:Description rdf:about="#M_N__45__FORMYLMETHIONINE_c">
              <bqbiol:isVersionOf>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__564_c" id="M_CPD__45__564_c" name="S-ribosyl-L-homocysteine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H17NO6S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 267.299</p>
            <p>smiles: [NH3+][C@@H](CCSC[C@H]1OC(O)[C@H](O)[C@@H]1O)C([O-])=O</p>
            <p>inchikey: IQFWYNFDWRYSRA-BLELIYKESA-N</p>
          </body>
        </notes>
        <annotation>
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                </rdf:Bag>
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            </rdf:Description>
          </rdf:RDF>
        </annotation>
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      <species metaid="M_cis__45__delta15__45__3__45__oxo__45__gheddoyl__45__ACPs_c" id="M_cis__45__delta15__45__3__45__oxo__45__gheddoyl__45__ACPs_c" name="a cis-delta15-3-oxo-C34:1-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_cis__45__delta15__45__3__45__hydroxygheddoyl__45__ACPs_c" id="M_cis__45__delta15__45__3__45__hydroxygheddoyl__45__ACPs_c" name="a cis-delta15-3-hydroxyC34:1-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_N__45__FORMYLKYNURENINE_c" id="M_N__45__FORMYLKYNURENINE_c" name="N-formylkynurenine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C11H12N2O4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 236.224</p>
            <p>smiles: [H]C(=O)Nc1ccccc1C(=O)C[C@@H]([NH3+])C([O-])=O</p>
            <p>inchikey: BYHJHXPTQMMKCA-MRVPVSSYSA-N</p>
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        </notes>
        <annotation>
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      <species metaid="M_cis__45__delta7__45__3__45__hydroxycerotoyl__45__ACPs_c" id="M_cis__45__delta7__45__3__45__hydroxycerotoyl__45__ACPs_c" name="a cis-delta7-3-hydroxyC26:1-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_cis__45__delta7__45__3__45__oxo__45__cerotoyl__45__ACPs_c" id="M_cis__45__delta7__45__3__45__oxo__45__cerotoyl__45__ACPs_c" name="a cis-delta7-3-oxo-C26:1-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_cis__45__D21__45__39__45__oxo__45__40__45__Me__45__C59__45__1__45__ACPs_c" id="M_cis__45__D21__45__39__45__oxo__45__40__45__Me__45__C59__45__1__45__ACPs_c" name="a cis-delta21-39-oxo-40-methyl-C59:1-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_cis__45__21__45__CP__45__39__45__keto__45__40__45__Me__45__C60__45__ACPs_c" id="M_cis__45__21__45__CP__45__39__45__keto__45__40__45__Me__45__C60__45__ACPs_c" name="a cis-keto-C60-meroacyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Protein__45__L__45__methionine__45__S__45__S__45__oxides_c" id="M_Protein__45__L__45__methionine__45__S__45__S__45__oxides_c" name="a protein-L-methionine-(S)-S-oxide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10N2O3R2S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Arachidoyl__45__ACPs_c" id="M_Arachidoyl__45__ACPs_c" name="an arachidoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__8974_c" id="M_CPD__45__8974_c" name="dimethylthiophosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H6O3PS">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 141.107</p>
            <p>smiles: COP([O-])(=S)OC</p>
            <p>inchikey: WWJJVKAEQGGYHJ-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD1G__45__277_c" id="M_CPD1G__45__277_c" name="cerotoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C47H82N7O17P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1142.179</p>
            <p>smiles: CCCCCCCCCCCCCCCCCCCCCCCCCC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: FHLYYFPJDVYWQH-CPIGOPAHSA-J</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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        </annotation>
      </species>
      <species metaid="M_CPD__45__8973_c" id="M_CPD__45__8973_c" name="methyl parathion" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H10NO5PS">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 263.207</p>
            <p>smiles: COP(=S)(OC)Oc1ccc(cc1)[N+]([O-])=O</p>
            <p>inchikey: RLBIQVVOMOPOHC-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
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        </annotation>
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      <species metaid="M_CPD1G__45__332_c" id="M_CPD1G__45__332_c" name="2-carboxy-cerotoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C48H81N7O19P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1185.181</p>
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            <p>inchikey: VUYDEKMWDHLSSI-RVNPWDOLSA-I</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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        </annotation>
      </species>
      <species metaid="M_CPD__45__12724_c" id="M_CPD__45__12724_c" name="baicalein" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H9O5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 269.2295</p>
            <p>smiles: Oc1c([O-])cc2oc(cc(=O)c2c1O)-c1ccccc1</p>
            <p>inchikey: FXNFHKRTJBSTCS-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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        </annotation>
      </species>
      <species metaid="M_CPD__45__15172_c" id="M_CPD__45__15172_c" name="6,7-dehydrobaicalein" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C15H7O5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 267.2136</p>
            <p>smiles: [O-]C1=c2c(=O)cc(oc2=CC(=O)C1=O)-c1ccccc1</p>
            <p>inchikey: LSQWCIYRGVWPFX-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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              </bqbiol:isVersionOf>
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        </annotation>
      </species>
      <species metaid="M_3__45__HYDROXY__45__ISOVALERYL__45__COA_c" id="M_3__45__HYDROXY__45__ISOVALERYL__45__COA_c" name="3-hydroxyisovaleryl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C26H40N7O18P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 863.62</p>
            <p>smiles: CC(C)(O)CC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: PEVZKILCBDEOBT-CITAKDKDSA-J</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_3__45__HYDROXY__45__ISOVALERYL__45__COA_c">
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          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_1__45__PHOSPHATIDYL__45__1D__45__MYO__45__INOSITOL__45__35__45__BISPH_c" id="M_1__45__PHOSPHATIDYL__45__1D__45__MYO__45__INOSITOL__45__35__45__BISPH_c" name="1-phosphatidyl-1D-myo-inositol 3,5-bisphosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C11H14O19P3R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [H][C@@](COC([*])=O)(COP([O-])(=O)O[C@H]1[C@H](O)[C@@H](OP([O-])([O-])=O)[C@H](O)[C@@H](OP([O-])([O-])=O)[C@H]1O)OC([*])=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_UDP__45__ACETYL__45__CARBOXYVINYL__45__GLUCOSAMINE_c" id="M_UDP__45__ACETYL__45__CARBOXYVINYL__45__GLUCOSAMINE_c" name="UDP-N-acetyl-&amp;alpha;-D-glucosamine-enolpyruvate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C20H26N3O19P2">
        <notes>
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            <p>mass: 674.3783</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 676.3942</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
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        <notes>
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            <p>mass: 170.1852</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 544.2989</p>
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        <notes>
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            <p>mass: 538.8885</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1120.046</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1118.03</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1075.993</p>
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        <notes>
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      <species metaid="M_QXC__45__ACP_c" id="M_QXC__45__ACP_c" name="quinoxaline-2-carboxyl-[acyl-carrier protein]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      <species metaid="M_Polyisoprenyl__45__Diphosphates_c" id="M_Polyisoprenyl__45__Diphosphates_c" name="an isoprenoid diphosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 502.3547</p>
            <p>smiles: Nc1ncnc2n(cnc12)[C@@H]1O[C@H](COP([O-])(=O)OC(=O)c2cnc3ccccc3n2)[C@@H](O)[C@H]1O</p>
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      <species metaid="M_4__45__Hydroxy__45__3__45__polyprenylbenzoates_c" id="M_4__45__Hydroxy__45__3__45__polyprenylbenzoates_c" name="a 4-hydroxy-3-polyprenylbenzoate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      <species metaid="M_Seminolipids_c" id="M_Seminolipids_c" name="a seminolipid" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H15O12SR2">
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          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: OC[C@H]1O[C@@H](OC[C@@H](CO[*])OC([*])=O)[C@H](O)[C@@H](OS([O-])(=O)=O)[C@H]1O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_1__45__Alkyl__45__2__45__acyl__45__3D__45__galactosyl__45__sn__45__glycerol_c" id="M_1__45__Alkyl__45__2__45__acyl__45__3D__45__galactosyl__45__sn__45__glycerol_c" name="a 1-O-alkyl-2-O-acyl-3-O-&amp;beta;-D-galactosyl-sn-glycerol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H16O9R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: OC[C@H]1O[C@@H](OC[C@@H](CO[*])OC([*])=O)[C@H](O)[C@@H](O)[C@H]1O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_trans__45__delta2__45__behenoyl__45__ACPs_c" id="M_trans__45__delta2__45__behenoyl__45__ACPs_c" name="a trans-docos-2-enoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Behenoyl__45__ACPs_c" id="M_Behenoyl__45__ACPs_c" name="a behenoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_3__45__oxo__45__lignoceroyl__45__ACPs_c" id="M_3__45__oxo__45__lignoceroyl__45__ACPs_c" name="a 3-oxo-lignoceroyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_R__45__3__45__hydroxylignoceroyl__45__ACPs_c" id="M_R__45__3__45__hydroxylignoceroyl__45__ACPs_c" name="a (3R)-3-hydroxylignoceroyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CAMP_c" id="M_CAMP_c" name="cyclic-AMP" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H11N5O6P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 328.1986</p>
            <p>smiles: Nc1ncnc2n(cnc12)[C@@H]1O[C@@H]2COP([O-])(=O)O[C@H]2[C@H]1O</p>
            <p>inchikey: IVOMOUWHDPKRLL-KQYNXXCUSA-M</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_CAMP_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_PARAOXON_c" id="M_PARAOXON_c" name="paraoxon" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H14NO6P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 275.195</p>
            <p>smiles: CCOP(=O)(OCC)Oc1ccc(cc1)[N+]([O-])=O</p>
            <p>inchikey: WYMSBXTXOHUIGT-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_PARAOXON_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C10H14NO6P/c1-3-15-18(14,16-4-2)17-10-7-5-9(6-8-10)11(12)13/h5-8H,3-4H2,1-2H3"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
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      <species metaid="M_DIETHYLPHOSPHATE_c" id="M_DIETHYLPHOSPHATE_c" name="diethylphosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H10O4P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 153.0941</p>
            <p>smiles: CCOP([O-])(=O)OCC</p>
            <p>inchikey: UCQFCFPECQILOL-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_DIETHYLPHOSPHATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
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                </rdf:Bag>
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      <species metaid="M_C5_c" id="M_C5_c" name="undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-&amp;gamma;-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C87H139N7O23P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1713.0174</p>
            <p>smiles: C[C@@H](NC(=O)[C@@H](C)NC(=O)[C@H](CCC[C@@H]([NH3+])C([O-])=O)NC(=O)CC[C@@H](NC(=O)[C@H](C)NC(=O)[C@@H](C)O[C@H]1[C@H](O)[C@@H](CO)O[C@H](OP([O-])(=O)OP([O-])(=O)OC\C=C(\C)CC\C=C(\C)CC\C=C(\C)CC\C=C(\C)CC\C=C(\C)CC\C=C(\C)CC\C=C(\C)CC\C=C(\C)CC\C=C(/C)CC\C=C(/C)CCC=C(C)C)[C@@H]1NC(C)=O)C([O-])=O)C([O-])=O</p>
            <p>inchikey: PNWZQTONLRRPST-KLDRQJOASA-J</p>
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        </annotation>
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      <species metaid="M_C1_c" id="M_C1_c" name="UDP-N-acetyl-&amp;alpha;-D-muramoyl-L-alanyl-&amp;gamma;-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C41H61N9O28P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1189.9163</p>
            <p>smiles: C[C@@H](NC(=O)[C@@H](C)NC(=O)[C@H](CCC[C@@H]([NH3+])C([O-])=O)NC(=O)CC[C@@H](NC(=O)[C@H](C)NC(=O)[C@@H](C)O[C@H]1[C@H](O)[C@@H](CO)O[C@H](OP([O-])(=O)OP([O-])(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)n2ccc(=O)[nH]c2=O)[C@@H]1NC(C)=O)C([O-])=O)C([O-])=O</p>
            <p>inchikey: IMWOXEZVYQDRDF-MCZXNMLPSA-J</p>
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        </notes>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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      <species metaid="M_CPD__45__9039_c" id="M_CPD__45__9039_c" name="cobalt-precorrin-2" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C42H38CoN4O16">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 913.7059</p>
            <p>smiles: C[C@]1(CC([O-])=O)[C@H](CCC([O-])=O)C2=CC3=[N+]4C(Cc5c(CCC([O-])=O)c(CC([O-])=O)c6C=C7[N+]8=C(C=C1N2[Co--]48n56)[C@@H](CCC([O-])=O)[C@]7(C)CC([O-])=O)=C(CCC([O-])=O)C3CC([O-])=O</p>
            <p>inchikey: BKIWSQUNFCJSOI-HZUOBFSFSA-E</p>
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          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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      <species metaid="M_L__45__GULONATE_c" id="M_L__45__GULONATE_c" name="L-gulonate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O7">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 195.1479</p>
            <p>smiles: OC[C@H](O)[C@@H](O)[C@H](O)[C@H](O)C([O-])=O</p>
            <p>inchikey: RGHNJXZEOKUKBD-QTBDOELSSA-M</p>
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          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_L__45__GULONATE_c">
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              </bqbiol:isVersionOf>
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      <species metaid="M_L__45__GULONO__45__1__45__4__45__LACTONE_c" id="M_L__45__GULONO__45__1__45__4__45__LACTONE_c" name="L-gulono-1,4-lactone" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H10O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 178.14</p>
            <p>smiles: [H][C@@]1(OC(=O)[C@@H](O)[C@H]1O)[C@@H](O)CO</p>
            <p>inchikey: SXZYCXMUPBBULW-SKNVOMKLSA-N</p>
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      <species metaid="M_L__45__1__45__PHOSPHATIDYL__45__SERINE_c" id="M_L__45__1__45__PHOSPHATIDYL__45__SERINE_c" name="an L-1-phosphatidylserine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H11NO10PR2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [NH3+][C@@H](COP([O-])(=O)OC[C@@H](COC([*])=O)OC([*])=O)C([O-])=O</p>
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        </notes>
      </species>
      <species metaid="M_4__45__HYDROXYBENZALDEHYDE_c" id="M_4__45__HYDROXYBENZALDEHYDE_c" name="4-hydroxybenzaldehyde" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H6O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 122.1213</p>
            <p>smiles: [H]C(=O)c1ccc(O)cc1</p>
            <p>inchikey: RGHHSNMVTDWUBI-UHFFFAOYSA-N</p>
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            <rdf:Description rdf:about="#M_4__45__HYDROXYBENZALDEHYDE_c">
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                </rdf:Bag>
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      <species metaid="M_CPD__45__7616_c" id="M_CPD__45__7616_c" name="protocatechualdehyde" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H6O3">
        <notes>
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            <p>mass: 138.1207</p>
            <p>smiles: [H]C(=O)c1ccc(O)c(O)c1</p>
            <p>inchikey: IBGBGRVKPALMCQ-UHFFFAOYSA-N</p>
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              </bqbiol:isVersionOf>
            </rdf:Description>
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        </annotation>
      </species>
      <species metaid="M_CPD__45__3762_c" id="M_CPD__45__3762_c" name="5-amino-4-imidazolecarboxyamide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H6N4O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 126.1166</p>
            <p>smiles: NC(=O)c1nc[nH]c1N</p>
            <p>inchikey: DVNYTAVYBRSTGK-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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        </annotation>
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      <species metaid="M_CPD0__45__2232_c" id="M_CPD0__45__2232_c" name="(S)-3-hydroxyhexadecanoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H62N7O18P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1017.913</p>
            <p>smiles: CCCCCCCCCCCCC[C@H](O)CC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: DEHLMTDDPWDRDR-BCIKBWLNSA-J</p>
          </body>
        </notes>
        <annotation>
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        </annotation>
      </species>
      <species metaid="M_3__45__OXOPALMITOYL__45__COA_c" id="M_3__45__OXOPALMITOYL__45__COA_c" name="3-oxo-palmitoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H60N7O18P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1015.897</p>
            <p>smiles: CCCCCCCCCCCCCC(=O)CC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: NQMPLXPCRJOSHL-BBECNAHFSA-J</p>
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        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_3__45__OXOPALMITOYL__45__COA_c">
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        </annotation>
      </species>
      <species metaid="M_CPD0__45__2117_c" id="M_CPD0__45__2117_c" name="trans-hexadec-2-enoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H60N7O17P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 999.897</p>
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            <p>inchikey: JUPAQFRKPHPXLD-MSHHSVQMSA-J</p>
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        </notes>
        <annotation>
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        </annotation>
      </species>
      <species metaid="M_CPD__45__15568_c" id="M_CPD__45__15568_c" name="2-trans-tetradecenoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C35H56N7O17P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 971.844</p>
            <p>smiles: CCCCCCCCCCC\C=C\C(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: MBCVYCOKMMMWLX-YYMFEJJQSA-J</p>
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        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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        </annotation>
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      <species metaid="M_CPD0__45__2105_c" id="M_CPD0__45__2105_c" name="3-oxododecanoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H52N7O18P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 959.791</p>
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            <p>inchikey: HQANBZHVWIDNQZ-GMHMEAMDSA-J</p>
          </body>
        </notes>
        <annotation>
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      <species metaid="M_CPD__45__9245_e" id="M_CPD__45__9245_e" name="palmitoleate" compartment="e" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C16H29O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 253.4008</p>
            <p>smiles: CCCCCC\C=C/CCCCCCCC([O-])=O</p>
            <p>inchikey: SECPZKHBENQXJG-FPLPWBNLSA-M</p>
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        </notes>
        <annotation>
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      <species metaid="M_N__45__Acylsphingosine_c" id="M_N__45__Acylsphingosine_c" name="a (4E)-sphing-4-enine ceramide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C19H36NO3R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CCCCCCCCCCCCC\C=C\[C@@H](O)[C@H](CO)NC([*])=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_Alpha__45__hydroxyphytoceramides_c" id="M_Alpha__45__hydroxyphytoceramides_c" name="a (2&apos;R)-2&apos;-hydroxy-phytoceramide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_PHYTOSPINGOSINE_c" id="M_PHYTOSPINGOSINE_c" name="phytosphingosine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C18H40NO3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 318.5146</p>
            <p>smiles: CCCCCCCCCCCCCC[C@@H](O)[C@@H](O)[C@@H]([NH3+])CO</p>
            <p>inchikey: AERBNCYCJBRYDG-KSZLIROESA-O</p>
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        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_PHYTOSPINGOSINE_c">
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      <species metaid="M_2__45__Hydroxy__45__Fatty__45__Acids_c" id="M_2__45__Hydroxy__45__Fatty__45__Acids_c" name="a (2R)-2-hydroxy fatty acid" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H2O3R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: OC([*])C([O-])=O</p>
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      </species>
      <species metaid="M_4__45__MALEYL__45__ACETOACETATE_c" id="M_4__45__MALEYL__45__ACETOACETATE_c" name="4-maleyl-acetoacetate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C8H6O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 198.1307</p>
            <p>smiles: [O-]C(=O)CC(=O)CC(=O)\C=C/C([O-])=O</p>
            <p>inchikey: GACSIVHAIFQKTC-UPHRSURJSA-L</p>
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            <rdf:Description rdf:about="#M_4__45__MALEYL__45__ACETOACETATE_c">
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      <species metaid="M_CPD__45__15016_c" id="M_CPD__45__15016_c" name="(4S)-4-hydroxy-2-oxoglutarate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H4O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 160.0828</p>
            <p>smiles: O[C@@H](CC(=O)C([O-])=O)C([O-])=O</p>
            <p>inchikey: WXSKVKPSMAHCSG-REOHCLBHSA-L</p>
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      <species metaid="M_CPD__45__14443_c" id="M_CPD__45__14443_c" name="(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C7H7NO5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 185.1353</p>
            <p>smiles: O[C@H]1C[C@H](N=C(C1)C([O-])=O)C([O-])=O</p>
            <p>inchikey: DVTPRYHENFBCII-IMJSIDKUSA-L</p>
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              </bqbiol:isVersionOf>
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        </annotation>
      </species>
      <species metaid="M_CELLOBIOSE_c" id="M_CELLOBIOSE_c" name="&amp;beta;-D-cellobiose" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C12H22O11">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 342.2965</p>
            <p>smiles: OC[C@H]1O[C@@H](O[C@H]2[C@H](O)[C@@H](O)[C@H](O)O[C@@H]2CO)[C@H](O)[C@@H](O)[C@@H]1O</p>
            <p>inchikey: GUBGYTABKSRVRQ-QRZGKKJRSA-N</p>
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        </notes>
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            <rdf:Description rdf:about="#M_CELLOBIOSE_c">
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              </bqbiol:isVersionOf>
            </rdf:Description>
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        </annotation>
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      <species metaid="M_SEROTONIN_c" id="M_SEROTONIN_c" name="serotonin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C10H13N2O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 177.2225</p>
            <p>smiles: [NH3+]CCc1c[nH]c2ccc(O)cc12</p>
            <p>inchikey: QZAYGJVTTNCVMB-UHFFFAOYSA-O</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_SEROTONIN_c">
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          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__11665_c" id="M_CPD__45__11665_c" name="serotonin O-sulfate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H12N2O4S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 256.278</p>
            <p>smiles: [NH3+]CCc1c[nH]c2ccc(OS([O-])(=O)=O)cc12</p>
            <p>inchikey: JFWYSGGSCOOBGK-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_CPD__45__11665_c">
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      <species metaid="M_5__45__HYDROXYINDOLE_ACETALDEHYDE_c" id="M_5__45__HYDROXYINDOLE_ACETALDEHYDE_c" name="5-hydroxyindole acetaldehyde" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H9NO2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 175.184</p>
            <p>smiles: Oc1ccc2[nH]cc(CC=O)c2c1</p>
            <p>inchikey: OBFAPCIUSYHFIE-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_5__45__HYDROXYINDOLE_ACETALDEHYDE_c">
              <bqbiol:isVersionOf>
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      <species metaid="M_5__45__HYDROXYINDOLE_ACETATE_c" id="M_5__45__HYDROXYINDOLE_ACETATE_c" name="5-hydroxyindole acetate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H8NO3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 190.176</p>
            <p>smiles: Oc1ccc2[nH]cc(CC([O-])=O)c2c1</p>
            <p>inchikey: DUUGKQCEGZLZNO-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_5__45__HYDROXYINDOLE_ACETATE_c">
              <bqbiol:isVersionOf>
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        </annotation>
      </species>
      <species metaid="M_CPD__45__11671_c" id="M_CPD__45__11671_c" name="5-hydroxytryptophol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H11NO2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 177.1998</p>
            <p>smiles: OCCc1c[nH]c2ccc(O)cc12</p>
            <p>inchikey: KQROHCSYOGBQGJ-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__11671_c">
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      <species metaid="M_CPD__45__11674_c" id="M_CPD__45__11674_c" name="5-hydroxytryptophol sulfate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H10NO5S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 257</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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        </annotation>
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      <species metaid="M_2__45__Hydroxy__45__carboxylates_c" id="M_2__45__Hydroxy__45__carboxylates_c" name="a 2-hydroxy carboxylate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C2H2O3R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: OC([*])C([O-])=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_CPD__45__6746_c" id="M_CPD__45__6746_c" name="1D-myo-inositol 2-monophosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 258.121</p>
            <p>smiles: O[C@H]1[C@H](O)[C@@H](O)[C@@H](OP([O-])([O-])=O)[C@@H](O)[C@@H]1O</p>
            <p>inchikey: INAPMGSXUVUWAF-QWBQGLJISA-L</p>
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        </notes>
        <annotation>
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      <species metaid="M_2__45__hydroxyacyl__45__glutathiones_c" id="M_2__45__hydroxyacyl__45__glutathiones_c" name="S-(2-hydroxyacyl)glutathione" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H17N3O8SR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [NH3+][C@@H](CCC(=O)N[C@@H](CSC(=O)C(O)[*])C(=O)NCC([O-])=O)C([O-])=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_CPD__45__7214_c" id="M_CPD__45__7214_c" name="(2S)-dihydrotricetin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H12O7">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 304.2516</p>
            <p>smiles: Oc1cc(O)c2C(=O)C[C@H](Oc2c1)c1cc(O)c(O)c(O)c1</p>
            <p>inchikey: USQXPEWRYWRRJD-LBPRGKRZSA-N</p>
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        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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        </annotation>
      </species>
      <species metaid="M_CPD__45__7222_c" id="M_CPD__45__7222_c" name="trans-dodec-2-enoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H52N7O17P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 943.791</p>
            <p>smiles: CCCCCCCCC\C=C\C(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: IRFYVBULXZMEDE-DEEZISNZSA-J</p>
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        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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        </annotation>
      </species>
      <species metaid="M_CPD__45__7221_c" id="M_CPD__45__7221_c" name="3-cis-dodecenoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C33H52N7O17P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 943.791</p>
            <p>smiles: CCCCCCCC\C=C/CC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: XEMIVMKTVGRFTD-REDSNERGSA-J</p>
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      <species metaid="M_PROTEIN__45__L__45__BETA__45__ISOSPARTATE__45__METHYL__45__ESTERS_c" id="M_PROTEIN__45__L__45__BETA__45__ISOSPARTATE__45__METHYL__45__ESTERS_c" name="a protein L-&amp;beta;-isoaspartate &amp;alpha;-methyl ester" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      </species>
      <species metaid="M_PROTEIN__45__L__45__BETA__45__ISOASPARTATES_c" id="M_PROTEIN__45__L__45__BETA__45__ISOASPARTATES_c" name="a [protein]-L-&amp;beta;-isoaspartate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_holo__45__Transcarboxylases_c" id="M_holo__45__Transcarboxylases_c" name="a holo-[methylmalonyl-CoA:pyruvate carboxytransferase]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      </species>
      <species metaid="M_Phospholipid__45__Cyclopropane__45__Fatty__45__Acids_c" id="M_Phospholipid__45__Cyclopropane__45__Fatty__45__Acids_c" name="a [phospholipid] cyclopropane fatty acid" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Phospholipid__45__Olefinic__45__Fatty__45__Acids_c" id="M_Phospholipid__45__Olefinic__45__Fatty__45__Acids_c" name="a [phospholipid] olefinic fatty acid" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1154.061</p>
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            <p>mass: 1210.124</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 336.0861</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [O-]C([*])=O</p>
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      <species metaid="M_VERY__45__LONG__45__CHAIN__45__FATTY__45__ACYL__45__COA_c" id="M_VERY__45__LONG__45__CHAIN__45__FATTY__45__ACYL__45__COA_c" name="a very long chain fatty acyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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            <p>mass: 310.4295</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1056.926</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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            <p>mass: 377.138</p>
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            <p>mass: 155.1286</p>
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            <p>mass: 175.1167</p>
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            <p>mass: 153.1127</p>
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            <p>mass: 997.882</p>
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        </annotation>
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      <species metaid="M_CPD__45__17814_c" id="M_CPD__45__17814_c" name="(11Z)-(S)-3-hydroxyhexadec-11-enoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C37H60N7O18P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1015.897</p>
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        </notes>
        <annotation>
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      <species metaid="M_Actinorhodin__45__Intermediate__45__2_c" id="M_Actinorhodin__45__Intermediate__45__2_c" name="a (1&apos;,5&apos;-dihydroxy-3&apos;-oxo-2&apos;-(3&apos;&apos;-oxobutanoyl)cyclohexyl)-3,5-dioxohexanethioate-[PKS-acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_INDOLEYL__45__CPD_c" id="M_INDOLEYL__45__CPD_c" name="indole-3-acetonitrile" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H8N2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 156.1839</p>
            <p>smiles: N#CCc1c[nH]c2ccccc12</p>
            <p>inchikey: DMCPFOBLJMLSNX-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
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      <species metaid="M_CPD__45__12177_c" id="M_CPD__45__12177_c" name="(R)-methylmalonate-semialdehyde" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H5O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 101.0812</p>
            <p>smiles: [H][C@@](C)(C=O)C([O-])=O</p>
            <p>inchikey: VOKUMXABRRXHAR-GSVOUGTGSA-M</p>
          </body>
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      <species metaid="M_HYDROGEN__45__MOLECULE_c" id="M_HYDROGEN__45__MOLECULE_c" name="H2" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="H2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 2.01588</p>
            <p>smiles: [H][H]</p>
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          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_HYDROGEN__45__MOLECULE_c">
              <bqbiol:isVersionOf>
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      <species metaid="M_CPD__45__11495_c" id="M_CPD__45__11495_c" name="2-hydroxyphenylacetate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C8H7O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 151.1399</p>
            <p>smiles: Oc1ccccc1CC([O-])=O</p>
            <p>inchikey: CCVYRRGZDBSHFU-UHFFFAOYSA-M</p>
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        </notes>
        <annotation>
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      <species metaid="M_CPD__45__207_c" id="M_CPD__45__207_c" name="phenylacetyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C29H38N7O17P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 881.637</p>
            <p>smiles: CC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12)[C@@H](O)C(=O)NCCC(=O)NCCSC(=O)Cc1ccccc1</p>
            <p>inchikey: ZIGIFDRJFZYEEQ-CECATXLMSA-J</p>
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      <species metaid="M_CPD__45__11715_c" id="M_CPD__45__11715_c" name="phenylacetylglycine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H10NO3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 192.1918</p>
            <p>smiles: [O-]C(=O)CNC(=O)Cc1ccccc1</p>
            <p>inchikey: UTYVDVLMYQPLQB-UHFFFAOYSA-M</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 193.0299</p>
            <p>smiles: [O-]C(=O)C(=O)CP([O-])(=O)C([O-])=O</p>
            <p>inchikey: YTKWPNBYPYOWCP-UHFFFAOYSA-K</p>
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      <species metaid="M_CPD__45__11763_c" id="M_CPD__45__11763_c" name="bisorganyltrisulfane" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H33N6O12S3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 645.705</p>
            <p>smiles: [NH3+]C(CCC([O-])=[NH+]C(CSSSCC([NH+]=C([O-])CCC([NH3+])C([O-])=O)C([O-])=[NH+]CC([O-])=O)C(O)[NH2+]CC([O-])=O)C([O-])=O</p>
            <p>inchikey: IMZRQZICOZIGNP-UHFFFAOYSA-M</p>
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      <species metaid="M_CPD1F__45__115_c" id="M_CPD1F__45__115_c" name="&amp;delta;-carotene" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C40H56">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 536.8726</p>
            <p>smiles: CC(C)=CCC\C(C)=C\C=C\C(\C)=C\C=C\C(\C)=C\C=C\C=C(/C)\C=C\C=C(/C)\C=C\C1C(C)=CCCC1(C)C</p>
            <p>inchikey: WGIYGODPCLMGQH-BXOLYSJBSA-N</p>
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      <species metaid="M_CPD__45__7414_c" id="M_CPD__45__7414_c" name="&amp;epsilon;-carotene" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C40H56">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 536.8726</p>
            <p>smiles: C\C(\C=C\C=C(/C)\C=C\C1C(C)=CCCC1(C)C)=C/C=C/C=C(\C)/C=C/C=C(\C)/C=C/C1C(C)=CCCC1(C)C</p>
            <p>inchikey: QABFXOMOOYWZLZ-JLTXGRSLSA-N</p>
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      <species metaid="M_3__45__OXOPIMELOYL__45__COA_c" id="M_3__45__OXOPIMELOYL__45__COA_c" name="3-oxopimeloyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-5" fbc:chemicalFormula="C28H39N7O20P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 918.633</p>
            <p>smiles: CC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12)[C@@H](O)C(=O)NCCC(=O)NCCSC(=O)CC(=O)CCCC([O-])=O</p>
            <p>inchikey: KJXFOFKTZDJLMQ-UYRKPTJQSA-I</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 163.1506</p>
            <p>smiles: Oc1ccccc1\C=C/C([O-])=O</p>
            <p>inchikey: PMOWTIHVNWZYFI-WAYWQWQTSA-M</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 325.2912</p>
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            <p>inchikey: GVRIYIMNJGULCZ-QLFWQTQQSA-M</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 146.1427</p>
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            <p>inchikey: ZYGHJZDHTFUPRJ-UHFFFAOYSA-N</p>
          </body>
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            <rdf:Description rdf:about="#M_COUMARIN_c">
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 538.8885</p>
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            <p>inchikey: MICBIPJWKDDGNL-FILYMEKXSA-N</p>
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      <species metaid="M_NEUROSPORENE_c" id="M_NEUROSPORENE_c" name="all-trans neurosporene" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C40H58">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 538.8885</p>
            <p>smiles: CC(C)=CCC\C(C)=C\CC\C(C)=C\C=C\C(\C)=C\C=C\C=C(/C)\C=C\C=C(/C)\C=C\C=C(/C)CCC=C(C)C</p>
            <p>inchikey: ATCICVFRSJQYDV-XILUKMICSA-N</p>
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        <annotation>
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            <rdf:Description rdf:about="#M_NEUROSPORENE_c">
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      <species metaid="M_N__45__TETRADECANOYLGLYCYL__45__PEPTIDE_c" id="M_N__45__TETRADECANOYLGLYCYL__45__PEPTIDE_c" name="N-tetradecanoylglycyl-peptide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_GLYCYL__45__PEPTIDE_c" id="M_GLYCYL__45__PEPTIDE_c" name="glycyl-peptide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H9N3O4R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [NH3+]CC(=O)NC([*])C(=O)NC([*])C([O-])=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_Poly__45__Gamma__45__Glutamylcysteine__45__Glycines_c" id="M_Poly__45__Gamma__45__Glutamylcysteine__45__Glycines_c" name="a poly-[&amp;gamma;-glutamylcysteine]-glycine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      </species>
      <species metaid="M_Mannosyl5__45__N__45__Glycans_c" id="M_Mannosyl5__45__N__45__Glycans_c" name="a (mannosyl)5-N-glycan" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C50H82N4O38R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CC(=O)N[C@@H]1[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]5O)[C@@H](O)[C@H](O[C@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]5O)[C@@H]4O)[C@@H](O)[C@H](O[C@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]4O)[C@@H]3O)[C@H](O)[C@H]2NC(C)=O)[C@@H](CO)O[C@H]1NC(=O)C[C@H](N*)C(=O)O*</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 904.65</p>
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      <species metaid="M_CPD__45__18077_c" id="M_CPD__45__18077_c" name="a [protein]-L-asparagine-[(glucosyl)3(mannosyl)9(N-acetylglucosaminyl)2]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Protein__45__L__45__Asparagine_c" id="M_Protein__45__L__45__Asparagine_c" name="a [protein]-L-asparagine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H6N2O2R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: NC(=O)CC(N*)C(*)=O</p>
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      </species>
      <species metaid="M_Triacylglycerides_c" id="M_Triacylglycerides_c" name="a triglyceride" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H5O6R3">
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          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [*]C(=O)OCC(COC([*])=O)OC([*])=O</p>
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        </notes>
      </species>
      <species metaid="M_tRNA__45__Containing__45__N7__45__Methylguanine__45__46_c" id="M_tRNA__45__Containing__45__N7__45__Methylguanine__45__46_c" name="N7-methylguanine46 in tRNA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Guanine46__45__in__45__tRNA_c" id="M_Guanine46__45__in__45__tRNA_c" name="guanine46 in tRNA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
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      <species metaid="M_MESO__45__DIAMINOPIMELATE_c" id="M_MESO__45__DIAMINOPIMELATE_c" name="meso-diaminopimelate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H14N2O4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 190.1971</p>
            <p>smiles: [NH3+][C@@H](CCC[C@@H]([NH3+])C([O-])=O)C([O-])=O</p>
            <p>inchikey: GMKMEZVLHJARHF-SYDPRGILSA-N</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1013.881</p>
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            <p>inchikey: LGTVDWICXIBIOI-UBPKJMQESA-J</p>
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      <species metaid="M_CPD__45__5164_e" id="M_CPD__45__5164_e" name="a (mannosyl)5-(N-acetylglucosaminyl)2-diphosphodolichol" compartment="e" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2">
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      <species metaid="M_CPD__45__166_e" id="M_CPD__45__166_e" name="a dolichyl &amp;beta;-D-glucosyl phosphate" compartment="e" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1">
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          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      <species metaid="M_CPD__45__171_e" id="M_CPD__45__171_e" name="a dolichyl &amp;beta;-D-mannosyl phosphate" compartment="e" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1">
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        <notes>
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            <p>mass: 849.2994</p>
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            <p>inchikey: KTGSDHZXAKCYHM-LSTWDCEHSA-L</p>
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      <species metaid="M_CPD__45__17894_c" id="M_CPD__45__17894_c" name="&amp;beta;-D-mannosyl-(C55 &amp;omega;-saturated dolichyl phosphate)" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C61H104O9P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1012.4474</p>
            <p>smiles: CC(C)CCC\C(C)=C\CC\C(C)=C\CC\C(C)=C/CC\C(C)=C/CC\C(C)=C/CC\C(C)=C/CC\C(C)=C/CC\C(C)=C/CC\C(C)=C/CCC(C)CCOP([O-])(=O)O[C@@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]1O</p>
            <p>inchikey: MBYVKTIIZNUHKN-NIVAAIEQSA-M</p>
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        </notes>
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      <species metaid="M_5Z__45__3__45__oxo__45__tetradec__45__5__45__enoyl__45__ACPs_c" id="M_5Z__45__3__45__oxo__45__tetradec__45__5__45__enoyl__45__ACPs_c" name="a (5Z)-3-oxo-tetradec-5-enoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_3Z__45__dodec__45__3__45__enoyl__45__ACPs_c" id="M_3Z__45__dodec__45__3__45__enoyl__45__ACPs_c" name="a (3Z)-dodec-3-enoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_3R__45__5Z__45__3__45__hydroxy__45__tetradec__45__5__45__enoyl__45__ACPs_c" id="M_3R__45__5Z__45__3__45__hydroxy__45__tetradec__45__5__45__enoyl__45__ACPs_c" name="a (3R,5Z)-3-hydroxy-tetradec-5-enoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Hepta__45__oxo__45__hexadecanoyl__45__ACPs_c" id="M_Hepta__45__oxo__45__hexadecanoyl__45__ACPs_c" name="a 3,5,7,9,11,13,15-hepta-oxo-hexadecanoyl-[PKS-acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_MONO__45__VINYL__45__PROTOCHLOROPHYLLIDE__45__A_c" id="M_MONO__45__VINYL__45__PROTOCHLOROPHYLLIDE__45__A_c" name="protochlorophyllide a" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C35H30MgN4O5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 610.943</p>
            <p>smiles: CCC1=C(C)C2=[N+]3C1=Cc1c(C)c4C(=O)[C-](C(=O)OC)C5=C6C(CCC([O-])=O)=C(C)C7=[N+]6[Mg--]3(n1c45)n1c(=C7)c(C)c(C=C)c1=C2</p>
            <p>inchikey: SSIKFLKOTZKJAG-UAVVDGTISA-K</p>
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        </notes>
        <annotation>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 544.9362</p>
            <p>smiles: CC(C)=CCC\C(C)=C\CC\C(C)=C\CC\C(C)=C\C=C\C=C(/C)CC\C=C(/C)CC\C=C(/C)CCC=C(C)C</p>
            <p>inchikey: YVLPJIGOMTXXLP-KEKOKYSKSA-N</p>
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        <annotation>
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            <rdf:Description rdf:about="#M_PHYTOENE_c">
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      <species metaid="M_CPD1F__45__114_c" id="M_CPD1F__45__114_c" name="all-trans-lycopene" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C40H56">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 536.8726</p>
            <p>smiles: CC(C)=CCC\C(C)=C\C=C\C(\C)=C\C=C\C(\C)=C\C=C\C=C(/C)\C=C\C=C(/C)\C=C\C=C(/C)CCC=C(C)C</p>
            <p>inchikey: OAIJSZIZWZSQBC-GYZMGTAESA-N</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 536.8726</p>
            <p>smiles: C\C(\C=C\C=C(/C)\C=C\C1C(C)=CCCC1(C)C)=C/C=C/C=C(\C)/C=C/C=C(\C)/C=C/C1=C(C)CCCC1(C)C</p>
            <p>inchikey: ANVAOWXLWRTKGA-JLTXGRSLSA-N</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 536.8726</p>
            <p>smiles: CC(C)=CCC\C(C)=C\C=C\C(\C)=C\C=C\C(\C)=C\C=C\C=C(/C)\C=C\C=C(/C)\C=C\C1=C(C)CCCC1(C)C</p>
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      <species metaid="M_GLYCEROPHOSPHOGLYCEROL_c" id="M_GLYCEROPHOSPHOGLYCEROL_c" name="glycerophosphoglycerol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H14O8P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 245.1449</p>
            <p>smiles: OCC(O)COP([O-])(=O)OCC(O)CO</p>
            <p>inchikey: LLCSXHMJULHSJN-UHFFFAOYSA-M</p>
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            <rdf:Description rdf:about="#M_GLYCEROPHOSPHOGLYCEROL_c">
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      <species metaid="M_PANTOTHENATE_c" id="M_PANTOTHENATE_c" name="(R)-pantothenate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C9H16NO5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 218.2276</p>
            <p>smiles: CC(C)(CO)[C@@H](O)C(=O)NCCC([O-])=O</p>
            <p>inchikey: GHOKWGTUZJEAQD-ZETCQYMHSA-M</p>
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            <rdf:Description rdf:about="#M_PANTOTHENATE_c">
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      <species metaid="M_L__45__PANTOATE_c" id="M_L__45__PANTOATE_c" name="(R)-pantoate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H11O4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 147.1497</p>
            <p>smiles: CC(C)(CO)[C@@H](O)C([O-])=O</p>
            <p>inchikey: OTOIIPJYVQJATP-BYPYZUCNSA-M</p>
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      <species metaid="M_4__45__P__45__PANTOTHENATE_c" id="M_4__45__P__45__PANTOTHENATE_c" name="(R)-4&apos;-phosphopantothenate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C9H15NO8P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 296.1927</p>
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            <p>inchikey: XHFVGHPGDLDEQO-ZETCQYMHSA-K</p>
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      <species metaid="M_3__45__KETOBUTYRATE_c" id="M_3__45__KETOBUTYRATE_c" name="acetoacetate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C4H5O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 101.0812</p>
            <p>smiles: CC(=O)CC([O-])=O</p>
            <p>inchikey: WDJHALXBUFZDSR-UHFFFAOYSA-M</p>
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              <bqbiol:isVersionOf>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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        </annotation>
      </species>
      <species metaid="M_HYPOXANTHINE_c" id="M_HYPOXANTHINE_c" name="hypoxanthine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H4N4O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 136.1115</p>
            <p>smiles: O=c1[nH]cnc2nc[nH]c12</p>
            <p>inchikey: FDGQSTZJBFJUBT-UHFFFAOYSA-N</p>
          </body>
        </notes>
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            <rdf:Description rdf:about="#M_HYPOXANTHINE_c">
              <bqbiol:isVersionOf>
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                </rdf:Bag>
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      <species metaid="M_CPD__45__7682_c" id="M_CPD__45__7682_c" name="1-piperideine 6-carboxylate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H8NO2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 126.1338</p>
            <p>smiles: [H][C@]1(CCCC=N1)C([O-])=O</p>
            <p>inchikey: CSDPVAKVEWETFG-YFKPBYRVSA-M</p>
          </body>
        </notes>
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      <species metaid="M_CPD__45__11878_c" id="M_CPD__45__11878_c" name="3,4-dihydroxyphenylglycol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H10O4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 170.1626</p>
            <p>smiles: OCC(O)c1ccc(O)c(O)c1</p>
            <p>inchikey: MTVWFVDWRVYDOR-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
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                </rdf:Bag>
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      </species>
      <species metaid="M_DIHYDROXYPHENYLGLYCOLALDEHYDE_c" id="M_DIHYDROXYPHENYLGLYCOLALDEHYDE_c" name="3,4-dihydroxyphenylglycolaldehyde" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H8O4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 168.1467</p>
            <p>smiles: [H]C(=O)C(O)c1ccc(O)c(O)c1</p>
            <p>inchikey: YUGMCLJIWGEKCK-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_DIHYDROXYPHENYLGLYCOLALDEHYDE_c">
              <bqbiol:isVersionOf>
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                </rdf:Bag>
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      <species metaid="M_CPD__45__7422_c" id="M_CPD__45__7422_c" name="&amp;alpha;-zeacarotene" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C40H58">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 538.8885</p>
            <p>smiles: CC(C)=CCC\C(C)=C\CC\C(C)=C\C=C\C(\C)=C\C=C\C=C(/C)\C=C\C=C(/C)\C=C\C1C(C)=CCCC1(C)C</p>
            <p>inchikey: IGABZIVJSNQMPZ-FILYMEKXSA-N</p>
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        <annotation>
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                </rdf:Bag>
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      <species metaid="M_CPD__45__7139_c" id="M_CPD__45__7139_c" name="delphinidin 3,5-di-O-&amp;beta;-D-glucoside" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C27H30O17">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 626.5169</p>
            <p>smiles: OC[C@H]1O[C@@H](Oc2cc3c(O[C@@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@H]4O)cc([O-])cc3[o+]c2-c2cc(O)c(O)c(O)c2)[C@H](O)[C@@H](O)[C@@H]1O</p>
            <p>inchikey: XCTGXGVGJYACEI-LCENJUANSA-N</p>
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        </notes>
        <annotation>
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        </annotation>
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      <species metaid="M_CPD__45__7117_c" id="M_CPD__45__7117_c" name="delphinidin-3-O-&amp;beta;-D-glucoside" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H19O12">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 463.3689</p>
            <p>smiles: OC[C@H]1O[C@@H](Oc2cc3c([O-])cc([O-])cc3[o+]c2-c2cc(O)c(O)c(O)c2)[C@H](O)[C@@H](O)[C@@H]1O</p>
            <p>inchikey: XENHPQQLDPAYIJ-PEVLUNPASA-M</p>
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        </notes>
        <annotation>
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      <species metaid="M_CPD__45__8058_c" id="M_CPD__45__8058_c" name="D-galactosylononitol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H24O11">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 356.3231</p>
            <p>smiles: [H][C@]1(O)[C@@]([H])(O)[C@@]([H])(O)[C@]([H])(O[C@@]2([H])O[C@]([H])(CO)[C@]([H])(O)[C@]([H])(O)[C@@]2([H])O)[C@@]([H])(OC)[C@]1([H])O</p>
            <p>inchikey: RSYNCMYDVZFZBP-NRORZAABSA-N</p>
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        </notes>
        <annotation>
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      <species metaid="M_4__45__METHYL__45__MYO__45__INOSITOL_c" id="M_4__45__METHYL__45__MYO__45__INOSITOL_c" name="D-ononitol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C7H14O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 194.1825</p>
            <p>smiles: CO[C@@H]1[C@@H](O)[C@@H](O)[C@@H](O)[C@H](O)[C@H]1O</p>
            <p>inchikey: DSCFFEYYQKSRSV-GESKJZQWSA-N</p>
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        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_4__45__METHYL__45__MYO__45__INOSITOL_c">
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                </rdf:Bag>
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      <species metaid="M_HSO3_c" id="M_HSO3_c" name="hydrogen sulfite" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 80.064</p>
            <p>smiles: [O-]S([O-])=O</p>
            <p>inchikey: LSNNMFCWUKXFEE-UHFFFAOYSA-L</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_HSO3_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/H2O3S/c1-4(2)3/h(H2,1,2,3)/p-2"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
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      <species metaid="M_PRECURSOR__45__Z_c" id="M_PRECURSOR__45__Z_c" name="cyclic pyranopterin phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H11N5O7P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 344.198</p>
            <p>smiles: Nc1nc2NC3OC4COP([O-])(=O)OC4C(=O)C3Nc2c(=O)[nH]1</p>
            <p>inchikey: PWFXLXMPGSLEOZ-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_PRECURSOR__45__Z_c">
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                </rdf:Bag>
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      <species metaid="M_CPD__45__4_c" id="M_CPD__45__4_c" name="molybdopterin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C10H11N5O6PS2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 392.33</p>
            <p>smiles: [H][C@]12Nc3nc(N)[nH]c(=O)c3N[C@@]1([H])C(S)=C([S-])[C@@H](COP([O-])([O-])=O)O2</p>
            <p>inchikey: HPEUEJRPDGMIMY-IFQPEPLCSA-K</p>
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        </notes>
        <annotation>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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        </annotation>
      </species>
      <species metaid="M_tRNA__45__uridine__45__38__45__40_c" id="M_tRNA__45__uridine__45__38__45__40_c" name="a uridine38-40 in tRNA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_tRNA__45__pseudouridine__45__38__45__40_c" id="M_tRNA__45__pseudouridine__45__38__45__40_c" name="a pseudouridine38-40 in tRNA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      </species>
      <species metaid="M_T2__45__DECENOYL__45__COA_c" id="M_T2__45__DECENOYL__45__COA_c" name="trans-dec-2-enoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C31H48N7O17P3S">
        <notes>
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            <p>mass: 915.738</p>
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        </notes>
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          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 913.722</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: O[C@@H]1[C@H](OP([O-])(=O)O*)[C@@H](COP([O-])(=O)O*)O[C@H]1n1ccc(=O)[nH]c1=O</p>
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        </notes>
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      <species metaid="M_tRNA__45__containing__45__5Me__45__uridine54_c" id="M_tRNA__45__containing__45__5Me__45__uridine54_c" name="a 5-methyluracil54 in tRNA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      <species metaid="M_ADENOSYLCOBALAMIN_C__45__BOUNDARY" id="M_ADENOSYLCOBALAMIN_C__45__BOUNDARY" name="adenosylcobalamin" compartment="C__45__BOUNDARY" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="0" fbc:chemicalFormula="C72H100CoN18O17P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1579.5818</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 18.0379</p>
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            <p>inchikey: QGZKDVFQNNGYKY-UHFFFAOYSA-O</p>
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      <species metaid="M_BIOTIN_C__45__BOUNDARY" id="M_BIOTIN_C__45__BOUNDARY" name="biotin" compartment="C__45__BOUNDARY" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H15N2O3S">
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          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 243.303</p>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      <species metaid="M_2E__45__5Z__45__tetradeca__45__2__45__5__45__dienoyl__45__ACPs_c" id="M_2E__45__5Z__45__tetradeca__45__2__45__5__45__dienoyl__45__ACPs_c" name="a (2E,5Z)-tetradeca-2,5-dienoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      <species metaid="M_7Z__45__3__45__oxo__45__hexadec__45__7__45__enoyl__45__ACPs_c" id="M_7Z__45__3__45__oxo__45__hexadec__45__7__45__enoyl__45__ACPs_c" name="a (7Z)-3-oxo-hexadec-7-enoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      <species metaid="M_3R__45__7Z__45__3__45__hydroxy__45__hexadec__45__7__45__enoyl__45__ACPs_c" id="M_3R__45__7Z__45__3__45__hydroxy__45__hexadec__45__7__45__enoyl__45__ACPs_c" name="a (3R,7Z)-3-hydroxy-hexadec-7-enoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
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          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      </species>
      <species metaid="M_7Z__45__hexadec__45__7__45__enoyl__45__ACPs_c" id="M_7Z__45__hexadec__45__7__45__enoyl__45__ACPs_c" name="a (7Z)-hexadec-7-enoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      <species metaid="M_2E__45__7Z__45__hexadeca__45__2__45__7__45__dienoyl__45__ACPs_c" id="M_2E__45__7Z__45__hexadeca__45__2__45__7__45__dienoyl__45__ACPs_c" name="a (2E,7Z)-hexadeca-2,7-dienoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      <species metaid="M_9Z__45__3__45__oxo__45__octadec__45__9__45__enoyl__45__ACPs_c" id="M_9Z__45__3__45__oxo__45__octadec__45__9__45__enoyl__45__ACPs_c" name="a (9Z)-3-oxo-octadec-9-enoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
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          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      <species metaid="M_3R__45__9Z__45__3__45__hydroxy__45__octadec__45__9__45__enoyl__45__ACPs_c" id="M_3R__45__9Z__45__3__45__hydroxy__45__octadec__45__9__45__enoyl__45__ACPs_c" name="a (3R,9Z)-3-hydroxy-octadec-9-enoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
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          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      <species metaid="M_CPD0__45__2189_c" id="M_CPD0__45__2189_c" name="4-hydroxy-L-threonine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H9NO4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 135.1186</p>
            <p>smiles: [NH3+][C@@H]([C@H](O)CO)C([O-])=O</p>
            <p>inchikey: JBNUARFQOCGDRK-GBXIJSLDSA-N</p>
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      <species metaid="M_CPD0__45__2030_c" id="M_CPD0__45__2030_c" name="glycerophosphoserine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H13NO8P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 258.1436</p>
            <p>smiles: [NH3+][C@@H](COP([O-])(=O)OC[C@H](O)CO)C([O-])=O</p>
            <p>inchikey: ZWZWYGMENQVNFU-UHNVWZDZSA-M</p>
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      <species metaid="M_CPD__45__15125_c" id="M_CPD__45__15125_c" name="2,4-dihydroxyhept-2-enedioate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C7H8O6">
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            <p>mass: 188.1359</p>
            <p>smiles: OC(CCC([O-])=O)C=C(O)C([O-])=O</p>
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      <species metaid="M_D__45__MYO__45__INOSITOL__45__34__45__BISPHOSPHATE_c" id="M_D__45__MYO__45__INOSITOL__45__34__45__BISPHOSPHATE_c" name="D-myo-inositol (3,4)-bisphosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C6H10O12P2">
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            <p>mass: 336.0861</p>
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            <p>inchikey: MCKAJXMRULSUKI-CNWJWELYSA-J</p>
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      <species metaid="M_CPD1F__45__129_c" id="M_CPD1F__45__129_c" name="all-trans-&amp;beta;-carotene" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C40H56">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 536.8726</p>
            <p>smiles: C\C(\C=C\C=C(/C)\C=C\C1=C(C)CCCC1(C)C)=C/C=C/C=C(\C)/C=C/C=C(\C)/C=C/C1=C(C)CCCC1(C)C</p>
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        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD1F__45__129_c">
              <bqbiol:isVersionOf>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Myo__45__inositol__45__monophosphates_c" id="M_Myo__45__inositol__45__monophosphates_c" name="a myo-inositol monophosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD1F__45__138_c" id="M_CPD1F__45__138_c" name="gibberellin A12-aldehyde" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H27O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 315.4271</p>
            <p>smiles: [H][C@@]12C[C@]3(CC1=C)[C@@H](C=O)[C@@]1([H])[C@@](C)(CCC[C@@]1(C)C([O-])=O)[C@]3([H])CC2</p>
            <p>inchikey: ZCTUNYRXJKLWPY-LLCOKINKSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD1F__45__138_c">
              <bqbiol:isVersionOf>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__6701_c" id="M_CPD__45__6701_c" name="1D-myo-inositol 5-monophosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 258.121</p>
            <p>smiles: O[C@@H]1[C@H](O)[C@@H](O)[C@H](OP([O-])([O-])=O)[C@@H](O)[C@@H]1O</p>
            <p>inchikey: INAPMGSXUVUWAF-KXXVROSKSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__6701_c">
              <bqbiol:isVersionOf>
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                </rdf:Bag>
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            </rdf:Description>
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        </annotation>
      </species>
      <species metaid="M_CPD__45__6702_c" id="M_CPD__45__6702_c" name="1D-myo-inositol 6-monophosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 258.121</p>
            <p>smiles: O[C@@H]1[C@@H](O)[C@H](O)[C@@H](OP([O-])([O-])=O)[C@H](O)[C@@H]1O</p>
            <p>inchikey: INAPMGSXUVUWAF-XCMZKKERSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__6702_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C6H13O9P/c7-1-2(8)4(10)6(5(11)3(1)9)15-16(12,13)14/h1-11H,(H2,12,13,14)/p-2/t1-,2-,3-,4+,5-,6-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_2__45__ACETO__45__2__45__HYDROXY__45__BUTYRATE_c" id="M_2__45__ACETO__45__2__45__HYDROXY__45__BUTYRATE_c" name="(S)-2-aceto-2-hydroxybutanoate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H9O4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 145.1338</p>
            <p>smiles: CC[C@](O)(C(C)=O)C([O-])=O</p>
            <p>inchikey: VUQLHQFKACOHNZ-LURJTMIESA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_2__45__ACETO__45__2__45__HYDROXY__45__BUTYRATE_c">
              <bqbiol:isVersionOf>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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        </annotation>
      </species>
      <species metaid="M_CPD1F__45__95_c" id="M_CPD1F__45__95_c" name="gibberellin A12" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H26O4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 330.4191</p>
            <p>smiles: [H][C@@]12CC[C@@H]3C[C@]1(CC3=C)[C@@H](C([O-])=O)[C@@]1([H])[C@@]2(C)CCC[C@@]1(C)C([O-])=O</p>
            <p>inchikey: UJFQJDAESQJXTG-UFUZVNNQSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD1F__45__95_c">
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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        </annotation>
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      <species metaid="M_CPD1F__45__97_c" id="M_CPD1F__45__97_c" name="gibberellin A15 (open lactone form)" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H26O5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 346.4185</p>
            <p>smiles: [H][C@@]12C[C@@]3(CC1=C)[C@@]([H])(CC2)[C@]1(CO)CCC[C@@](C)(C([O-])=O)[C@@]1([H])[C@]3([H])C([O-])=O</p>
            <p>inchikey: TZGXVFYTKTWKCU-CXXOJBQZSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD1F__45__97_c">
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_N__45__ACETYL__45__BETA__45__D__45__GLUCOSAMINYL__45__16__45__ETCETERA_c" id="M_N__45__ACETYL__45__BETA__45__D__45__GLUCOSAMINYL__45__16__45__ETCETERA_c" name="N-acetyl-&amp;beta;-D-glucosaminyl-(1&amp;rarr;6)-&amp;beta;-D-galactosyl-(1&amp;rarr;4)-N-acetyl-&amp;beta;-D-glucosaminyl-R" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/>
      <species metaid="M_CA__43__2_C__45__BOUNDARY" id="M_CA__43__2_C__45__BOUNDARY" name="Ca2+" compartment="C__45__BOUNDARY" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="2" fbc:chemicalFormula="Ca">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 40.077</p>
            <p>smiles: [Ca++]</p>
            <p>inchikey: BHPQYMZQTOCNFJ-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CA__43__2_C__45__BOUNDARY">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/Ca/q+2"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_DIHYDROFOLATE_c" id="M_DIHYDROFOLATE_c" name="7,8-dihydrofolate monoglutamate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C19H19N7O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 441.3986</p>
            <p>smiles: Nc1nc2NCC(CNc3ccc(cc3)C(=O)N[C@@H](CCC([O-])=O)C([O-])=O)=Nc2c(=O)[nH]1</p>
            <p>inchikey: OZRNSSUDZOLUSN-LBPRGKRZSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_DIHYDROFOLATE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C19H21N7O6/c20-19-25-15-14(17(30)26-19)23-11(8-22-15)7-21-10-3-1-9(2-4-10)16(29)24-12(18(31)32)5-6-13(27)28/h1-4,12,21H,5-8H2,(H,24,29)(H,27,28)(H,31,32)(H4,20,22,25,26,30)/p-2/t12-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
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        </annotation>
      </species>
      <species metaid="M_CARBON__45__DIOXIDE_C__45__BOUNDARY" id="M_CARBON__45__DIOXIDE_C__45__BOUNDARY" name="CO2" compartment="C__45__BOUNDARY" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="0" fbc:chemicalFormula="CO2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 44.0095</p>
            <p>smiles: O=C=O</p>
            <p>inchikey: CURLTUGMZLYLDI-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CARBON__45__DIOXIDE_C__45__BOUNDARY">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/CO2/c2-1-3"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CL__45___C__45__BOUNDARY" id="M_CL__45___C__45__BOUNDARY" name="chloride" compartment="C__45__BOUNDARY" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="Cl">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 35.454</p>
            <p>smiles: [Cl-]</p>
            <p>inchikey: VEXZGXHMUGYJMC-UHFFFAOYSA-M</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CL__45___C__45__BOUNDARY">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/ClH/h1H/p-1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
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        </annotation>
      </species>
      <species metaid="M_CO__43__2_C__45__BOUNDARY" id="M_CO__43__2_C__45__BOUNDARY" name="Co2+" compartment="C__45__BOUNDARY" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="2" fbc:chemicalFormula="Co">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 58.9321</p>
            <p>smiles: [Co++]</p>
            <p>inchikey: XLJKHNWPARRRJB-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_CO__43__2_C__45__BOUNDARY">
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                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/Co/q+2"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
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        </annotation>
      </species>
      <species metaid="M_COB__45__I__45__ALAMIN_C__45__BOUNDARY" id="M_COB__45__I__45__ALAMIN_C__45__BOUNDARY" name="cob(I)alamin" compartment="C__45__BOUNDARY" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="C62H88CoN13O14P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1329.3483</p>
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            <p>inchikey: OMAOKVYASDIYQG-DSRCUDDDSA-L</p>
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        </notes>
        <annotation>
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        </annotation>
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      <species metaid="M_ALPHA__45__D__45__GALACTOSYL__45__ETCETERA__45__GLUCOSAMINYL_c" id="M_ALPHA__45__D__45__GALACTOSYL__45__ETCETERA__45__GLUCOSAMINYL_c" name="&amp;alpha;-D-galactosyl-(1,3)-&amp;beta;-D-galactosyl-(1,4)-N-acetyl-D-glucosaminyl-R" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C20H34NO15R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CC(=O)N[C@H]1C(-*)O[C@H](CO)[C@@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O[C@H]3O[C@H](CO)[C@H](O)[C@H](O)[C@H]3O)[C@H]2O)[C@@H]1O</p>
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        </notes>
      </species>
      <species metaid="M_CPD__45__3_C__45__BOUNDARY" id="M_CPD__45__3_C__45__BOUNDARY" name="molybdate" compartment="C__45__BOUNDARY" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="MoO4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 159.94</p>
            <p>smiles: [O-][Mo]([O-])(=O)=O</p>
            <p>inchikey: MEFBJEMVZONFCJ-UHFFFAOYSA-N</p>
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        </notes>
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                <rdf:Bag>
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      <species metaid="M_24__45__26__45__N__45__linked__45__Glycan_c" id="M_24__45__26__45__N__45__linked__45__Glycan_c" name="[(2,4),(2,6)]-N-linked glycan" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C70H114N8O48R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CC(=O)N[C@@H]1[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O)[C@H](O)[C@@H]4O[C@@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@H]4NC(C)=O)[C@@H](O)[C@H](O[C@H]4O[C@H](CO)[C@@H](O[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@H]5NC(C)=O)[C@H](O)[C@@H]4O[C@@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@H]4NC(C)=O)[C@@H]3O)[C@H](O)[C@H]2NC(C)=O)[C@@H](CO)O[C@H]1NC(=O)C[C@H](N*)C(=O)O*</p>
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        </notes>
      </species>
      <species metaid="M_LEUCOPELARGONIDIN__45__CMPD_c" id="M_LEUCOPELARGONIDIN__45__CMPD_c" name="(2R,3S,4S)-leucopelargonidin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C15H14O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 290.2681</p>
            <p>smiles: O[C@H]1[C@@H](O)c2c(O)cc(O)cc2O[C@@H]1c1ccc(O)cc1</p>
            <p>inchikey: FSVMLWOLZHGCQX-SOUVJXGZSA-N</p>
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            <rdf:Description rdf:about="#M_LEUCOPELARGONIDIN__45__CMPD_c">
              <bqbiol:isVersionOf>
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      <species metaid="M_CPD__45__315_C__45__BOUNDARY" id="M_CPD__45__315_C__45__BOUNDARY" name="cyanocob(III)alamin" compartment="C__45__BOUNDARY" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="0" fbc:chemicalFormula="C63H88CoN14O14P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1355.3652</p>
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      <species metaid="M_CPD__45__452_c" id="M_CPD__45__452_c" name="a 6-(N-acetyl-D-glucosaminyl)-1-phosphatidyl-1D-myo-inositol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C19H29NO18PR2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CC(=O)N[C@@H]1[C@@H](O)[C@H](O)[C@@H](CO)O[C@@H]1O[C@@H]1[C@@H](O)[C@H](O)[C@@H](O)[C@@H](O)[C@H]1OP([O-])(=O)OC[C@@H](COC([*])=O)OC([*])=O</p>
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        </notes>
      </species>
      <species metaid="M_CU__43___C__45__BOUNDARY" id="M_CU__43___C__45__BOUNDARY" name="Cu+" compartment="C__45__BOUNDARY" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="1" fbc:chemicalFormula="Cu">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 63.545</p>
            <p>smiles: [Cu+]</p>
            <p>inchikey: VMQMZMRVKUZKQL-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_CU__43___C__45__BOUNDARY">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/Cu/q+1"/>
                </rdf:Bag>
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      <species metaid="M_CU__43__2_C__45__BOUNDARY" id="M_CU__43__2_C__45__BOUNDARY" name="Cu2+" compartment="C__45__BOUNDARY" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="2" fbc:chemicalFormula="Cu">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 63.545</p>
            <p>smiles: [Cu++]</p>
            <p>inchikey: JPVYNHNXODAKFH-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/Cu/q+2"/>
                </rdf:Bag>
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        </annotation>
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      <species metaid="M_EDTA_C__45__BOUNDARY" id="M_EDTA_C__45__BOUNDARY" name="EDTA" compartment="C__45__BOUNDARY" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H14N2O8">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 290.2279</p>
            <p>smiles: [O-]C(=O)C[NH+](CC[NH+](CC([O-])=O)CC([O-])=O)CC([O-])=O</p>
            <p>inchikey: KCXVZYZYPLLWCC-UHFFFAOYSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_EDTA_C__45__BOUNDARY">
              <bqbiol:isVersionOf>
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                </rdf:Bag>
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      </species>
      <species metaid="M_24__45__246__45__N__45__linked__45__Glycan_c" id="M_24__45__246__45__N__45__linked__45__Glycan_c" name="a [(2,4),(2,4,6)]-N-linked glycan" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C78H127N9O53R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CC(=O)N[C@@H]1[C@@H](O)[C@H](O[C@@H]2O[C@H](CO)[C@@H](O[C@@H]3O[C@H](CO[C@H]4O[C@H](CO[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@H]5NC(C)=O)[C@@H](O[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@H]5NC(C)=O)[C@H](O)[C@@H]4O[C@@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@H]4NC(C)=O)[C@@H](O)[C@H](O[C@H]4O[C@H](CO)[C@@H](O[C@@H]5O[C@H](CO)[C@@H](O)[C@H](O)[C@H]5NC(C)=O)[C@H](O)[C@@H]4O[C@@H]4O[C@H](CO)[C@@H](O)[C@H](O)[C@H]4NC(C)=O)[C@@H]3O)[C@H](O)[C@H]2NC(C)=O)[C@@H](CO)O[C@H]1NC(=O)C[C@H](N*)C(=O)O*</p>
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        </notes>
      </species>
      <species metaid="M_CPD__45__8122_c" id="M_CPD__45__8122_c" name="molybdopterin adenine dinucleotide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C20H23N10O12P2S2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 721.536</p>
            <p>smiles: [H][C@]12Nc3nc(N)[nH]c(=O)c3N[C@@]1([H])C(S)=C([S-])[C@@H](COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n1cnc3c(N)ncnc13)O2</p>
            <p>inchikey: XJXFAXLUOKQPAQ-YPRLVJTJSA-K</p>
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        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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      <species metaid="M_CPD__45__8123_c" id="M_CPD__45__8123_c" name="MoO2-molybdopterin cofactor" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C10H10MoN5O8PS2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 519.26</p>
            <p>smiles: [H][C@]12Nc3nc(N)[nH]c(=O)c3N[C@@]1([H])C1=C(S[Mo](=O)(=O)S1)[C@@H](COP([O-])([O-])=O)O2</p>
            <p>inchikey: HDAJUGGARUFROU-JSUDGWJLSA-J</p>
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      <species metaid="M_CPD__45__8121_c" id="M_CPD__45__8121_c" name="icosatetraenoate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="CO2R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [O-]C([*])=O</p>
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        </notes>
      </species>
      <species metaid="M_2E__45__9Z__45__octadeca__45__2__45__9__45__dienoyl__45__ACPs_c" id="M_2E__45__9Z__45__octadeca__45__2__45__9__45__dienoyl__45__ACPs_c" name="a (2E,9Z)-octadeca-2,9-dienoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_11Z__45__3__45__oxo__45__icos__45__11__45__enoyl__45__ACPs_c" id="M_11Z__45__3__45__oxo__45__icos__45__11__45__enoyl__45__ACPs_c" name="an (11Z)-3-oxo-icos-11-enoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_3R__45__11Z__45__3__45__hydroxy__45__icos__45__11__45__enoyl__45__ACPs_c" id="M_3R__45__11Z__45__3__45__hydroxy__45__icos__45__11__45__enoyl__45__ACPs_c" name="a (3R,11Z)-3-hydroxy-icos-11-enoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      </species>
      <species metaid="M_2E__45__11Z__45__icosa__45__2__45__11__45__dienoyl__45__ACPs_c" id="M_2E__45__11Z__45__icosa__45__2__45__11__45__dienoyl__45__ACPs_c" name="an (2E,11Z)-icosa-2,11-dienoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_11Z__45__icos__45__11__45__enoyl__45__ACPs_c" id="M_11Z__45__icos__45__11__45__enoyl__45__ACPs_c" name="a gondoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_TRP__45__tRNAs_c" id="M_TRP__45__tRNAs_c" name="a tRNAtrp" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Charged__45__TRP__45__tRNAs_c" id="M_Charged__45__TRP__45__tRNAs_c" name="an L-tryptophanyl-[tRNAtrp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Charged__45__TYR__45__tRNAs_c" id="M_Charged__45__TYR__45__tRNAs_c" name="an L-tyrosyl-[tRNAtyr]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__15153_c" id="M_CPD__45__15153_c" name="3-methyl-6-methoxy-2-octaprenyl-1,4-benzoquinone" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C48H72O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 697.0835</p>
            <p>smiles: COC1=CC(=O)C(C)=C(C\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CCC=C(C)C)C1=O</p>
            <p>inchikey: FLYBTLROCQBHMR-KFSSTAEESA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__15153_c">
              <bqbiol:isVersionOf>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__15152_c" id="M_CPD__45__15152_c" name="6-methoxy-2-all-trans-octaprenyl-1,4-benzoquinone" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C47H70O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 683.0569</p>
            <p>smiles: COC1=CC(=O)C=C(C\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CC\C=C(/C)CCC=C(C)C)C1=O</p>
            <p>inchikey: AFTBILPWMUSGIN-MYCGWMCTSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__15152_c">
              <bqbiol:isVersionOf>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_SCOPOLETIN_c" id="M_SCOPOLETIN_c" name="scopoletin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C10H8O4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 192.1681</p>
            <p>smiles: COc1cc2ccc(=O)oc2cc1O</p>
            <p>inchikey: RODXRVNMMDRFIK-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_SCOPOLETIN_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C10H8O4/c1-13-9-4-6-2-3-10(12)14-8(6)5-7(9)11/h2-5,11H,1H3"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_SCOPOLIN_c" id="M_SCOPOLIN_c" name="scopolin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C16H18O9">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 354.3087</p>
            <p>smiles: COc1cc2ccc(=O)oc2cc1O[C@@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1O</p>
            <p>inchikey: SGTCGCCQZOUMJJ-YMILTQATSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_SCOPOLIN_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C16H18O9/c1-22-9-4-7-2-3-12(18)23-8(7)5-10(9)24-16-15(21)14(20)13(19)11(6-17)25-16/h2-5,11,13-17,19-21H,6H2,1H3/t11-,13-,14+,15-,16-/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Peptide__45__3__45__hydroxy__45__L__45__Aspartates_c" id="M_Peptide__45__3__45__hydroxy__45__L__45__Aspartates_c" name="a [protein]-3-hydroxy-L-aspartate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H5N2O5R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_IMIDAZOLE__45__ACETOL__45__P_c" id="M_IMIDAZOLE__45__ACETOL__45__P_c" name="imidazole acetol-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H7N2O5P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 218.105</p>
            <p>smiles: [O-]P([O-])(=O)OCC(=O)Cc1c[nH]cn1</p>
            <p>inchikey: YCFFMSOLUMRAMD-UHFFFAOYSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_IMIDAZOLE__45__ACETOL__45__P_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C6H9N2O5P/c9-6(3-13-14(10,11)12)1-5-2-7-4-8-5/h2,4H,1,3H2,(H,7,8)(H2,10,11,12)/p-2"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Protein__45__L__45__Aspartates_c" id="M_Protein__45__L__45__Aspartates_c" name="a [protein]-L-aspartate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__8624_c" id="M_CPD__45__8624_c" name="a [protein]-L-proline (&amp;omega; = 180)" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H8N2O2R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [*]NC(=O)[C@@H]1CCCN1C([*])=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_VibB_c" id="M_VibB_c" name="an apo-[VibB aryl-carrier protein]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_holo__45__VibB_c" id="M_holo__45__VibB_c" name="a holo-[VibB aryl-carrier protein]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_COUMARALDEHYDE_c" id="M_COUMARALDEHYDE_c" name="4-coumaraldehyde" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H8O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 148.1586</p>
            <p>smiles: [H]C(=O)\C=C\c1ccc(O)cc1</p>
            <p>inchikey: CJXMVKYNVIGQBS-OWOJBTEDSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_COUMARALDEHYDE_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C9H8O2/c10-7-1-2-8-3-5-9(11)6-4-8/h1-7,11H/b2-1+"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_COUMARYL__45__ALCOHOL_c" id="M_COUMARYL__45__ALCOHOL_c" name="4-coumaryl alcohol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H10O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 150.1745</p>
            <p>smiles: OC\C=C\c1ccc(O)cc1</p>
            <p>inchikey: PTNLHDGQWUGONS-OWOJBTEDSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_COUMARYL__45__ALCOHOL_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C9H10O2/c10-7-1-2-8-3-5-9(11)6-4-8/h1-6,10-11H,7H2/b2-1+"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_FE__43__2_C__45__BOUNDARY" id="M_FE__43__2_C__45__BOUNDARY" name="Fe2+" compartment="C__45__BOUNDARY" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="2" fbc:chemicalFormula="Fe">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 55.844</p>
            <p>smiles: [Fe++]</p>
            <p>inchikey: CWYNVVGOOAEACU-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_FE__43__2_C__45__BOUNDARY">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/Fe/q+2"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD1F__45__120_c" id="M_CPD1F__45__120_c" name="gibberellin A24" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H24O5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 344.4027</p>
            <p>smiles: [H][C@@]12CC[C@@H]3C[C@]1(CC3=C)[C@@H](C([O-])=O)[C@@]1([H])[C@]2(CCC[C@@]1(C)C([O-])=O)C=O</p>
            <p>inchikey: QQRSSHFHXYSOMF-CXXOJBQZSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD1F__45__120_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C20H26O5/c1-11-8-20-9-12(11)4-5-13(20)19(10-21)7-3-6-18(2,17(24)25)15(19)14(20)16(22)23/h10,12-15H,1,3-9H2,2H3,(H,22,23)(H,24,25)/p-2/t12-,13+,14-,15-,18-,19-,20+/m1/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_FE__43__3_C__45__BOUNDARY" id="M_FE__43__3_C__45__BOUNDARY" name="Fe3+" compartment="C__45__BOUNDARY" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="3" fbc:chemicalFormula="Fe">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 55.843</p>
            <p>smiles: [Fe+3]</p>
            <p>inchikey: VTLYFUHAOXGGBS-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_FE__43__3_C__45__BOUNDARY">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/Fe/q+3"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_K__43___C__45__BOUNDARY" id="M_K__43___C__45__BOUNDARY" name="K+" compartment="C__45__BOUNDARY" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="1" fbc:chemicalFormula="K">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 39.0978</p>
            <p>smiles: [K+]</p>
            <p>inchikey: NPYPAHLBTDXSSS-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_K__43___C__45__BOUNDARY">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/K/q+1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_Light_C__45__BOUNDARY" id="M_Light_C__45__BOUNDARY" name="h&amp;nu;" compartment="C__45__BOUNDARY" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="0" fbc:chemicalFormula="R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: *</p>
          </body>
        </notes>
      </species>
      <species metaid="M_MG__43__2_C__45__BOUNDARY" id="M_MG__43__2_C__45__BOUNDARY" name="Mg2+" compartment="C__45__BOUNDARY" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="2" fbc:chemicalFormula="Mg">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 24.304</p>
            <p>smiles: [Mg++]</p>
            <p>inchikey: JLVVSXFLKOJNIY-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_MG__43__2_C__45__BOUNDARY">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/Mg/q+2"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_MN__43__2_C__45__BOUNDARY" id="M_MN__43__2_C__45__BOUNDARY" name="Mn2+" compartment="C__45__BOUNDARY" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="2" fbc:chemicalFormula="Mn">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 54.93695</p>
            <p>smiles: [Mn++]</p>
            <p>inchikey: WAEMQWOKJMHJLA-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_MN__43__2_C__45__BOUNDARY">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/Mn/q+2"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__10332_c" id="M_CPD__45__10332_c" name="gibberellin44 (open lactone form)" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H26O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 362.4179</p>
            <p>smiles: [H][C@@]12CC[C@]3(O)C[C@]1(CC3=C)[C@@H](C([O-])=O)[C@@]1([H])[C@@]2(CO)CCC[C@@]1(C)C([O-])=O</p>
            <p>inchikey: AXEUUXHMKSPQAI-YTJHIPEWSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__10332_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C20H28O6/c1-11-8-19-9-20(11,26)7-4-12(19)18(10-21)6-3-5-17(2,16(24)25)14(18)13(19)15(22)23/h12-14,21,26H,1,3-10H2,2H3,(H,22,23)(H,24,25)/p-2/t12-,13+,14+,17+,18+,19-,20-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_NA__43___C__45__BOUNDARY" id="M_NA__43___C__45__BOUNDARY" name="Na+" compartment="C__45__BOUNDARY" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="1" fbc:chemicalFormula="Na">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 22.98922</p>
            <p>smiles: [Na+]</p>
            <p>inchikey: FKNQFGJONOIPTF-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_NA__43___C__45__BOUNDARY">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/Na/q+1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD__45__695_c" id="M_CPD__45__695_c" name="gibberellin A53" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H26O5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 346.4185</p>
            <p>smiles: [H][C@@]12CC[C@]3(O)C[C@]1(CC3=C)[C@@H](C([O-])=O)[C@@]1([H])[C@@]2(C)CCC[C@@]1(C)C([O-])=O</p>
            <p>inchikey: CZEMYYICWZPENF-VOLTXKGXSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__695_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C20H28O5/c1-11-9-19-10-20(11,25)8-5-12(19)17(2)6-4-7-18(3,16(23)24)14(17)13(19)15(21)22/h12-14,25H,1,4-10H2,2-3H3,(H,21,22)(H,23,24)/p-2/t12-,13+,14-,17-,18+,19-,20-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_NITRATE_C__45__BOUNDARY" id="M_NITRATE_C__45__BOUNDARY" name="nitrate" compartment="C__45__BOUNDARY" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-1" fbc:chemicalFormula="NO3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 62.0054</p>
            <p>smiles: [O-][N+]([O-])=O</p>
            <p>inchikey: NHNBFGGVMKEFGY-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_NITRATE_C__45__BOUNDARY">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/NO3/c2-1(3)4/q-1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_OXYGEN__45__MOLECULE_C__45__BOUNDARY" id="M_OXYGEN__45__MOLECULE_C__45__BOUNDARY" name="oxygen" compartment="C__45__BOUNDARY" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="0" fbc:chemicalFormula="O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 31.9988</p>
            <p>smiles: O=O</p>
            <p>inchikey: MYMOFIZGZYHOMD-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_OXYGEN__45__MOLECULE_C__45__BOUNDARY">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/O2/c1-2"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_PROTON_C__45__BOUNDARY" id="M_PROTON_C__45__BOUNDARY" name="H+" compartment="C__45__BOUNDARY" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="1" fbc:chemicalFormula="H">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1.00739</p>
            <p>smiles: [H+]</p>
            <p>inchikey: GPRLSGONYQIRFK-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_PROTON_C__45__BOUNDARY">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/p+1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_CPD1F__45__96_c" id="M_CPD1F__45__96_c" name="gibberellin A19" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C20H24O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 360.4021</p>
            <p>smiles: [H][C@@]12CC[C@]3(O)C[C@]1(CC3=C)[C@@H](C([O-])=O)[C@@]1([H])[C@]2(CCC[C@@]1(C)C([O-])=O)C=O</p>
            <p>inchikey: VNCQCPQAMDQEBY-YTJHIPEWSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD1F__45__96_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C20H26O6/c1-11-8-19-9-20(11,26)7-4-12(19)18(10-21)6-3-5-17(2,16(24)25)14(18)13(19)15(22)23/h10,12-14,26H,1,3-9H2,2H3,(H,22,23)(H,24,25)/p-2/t12-,13+,14+,17+,18+,19-,20-/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_SULFATE_C__45__BOUNDARY" id="M_SULFATE_C__45__BOUNDARY" name="sulfate" compartment="C__45__BOUNDARY" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="-2" fbc:chemicalFormula="O4S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 96.064</p>
            <p>smiles: [O-]S([O-])(=O)=O</p>
            <p>inchikey: QAOWNCQODCNURD-UHFFFAOYSA-L</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_SULFATE_C__45__BOUNDARY">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/H2O4S/c1-5(2,3)4/h(H2,1,2,3,4)/p-2"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_THIAMINE_C__45__BOUNDARY" id="M_THIAMINE_C__45__BOUNDARY" name="thiamine" compartment="C__45__BOUNDARY" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="1" fbc:chemicalFormula="C12H17N4OS">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 265.354</p>
            <p>smiles: Cc1c(CCO)sc[n+]1Cc1cnc(C)nc1N</p>
            <p>inchikey: JZRWCGZRTZMZEH-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_THIAMINE_C__45__BOUNDARY">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C12H17N4OS/c1-8-11(3-4-17)18-7-16(8)6-10-5-14-9(2)15-12(10)13/h5,7,17H,3-4,6H2,1-2H3,(H2,13,14,15)/q+1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_TYR__45__tRNAs_c" id="M_TYR__45__tRNAs_c" name="a tRNAtyr" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="RH">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__10329_c" id="M_CPD__45__10329_c" name="&amp;alpha;-L-fucopyranose" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O5">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 164.1565</p>
            <p>smiles: C[C@@H]1O[C@@H](O)[C@@H](O)[C@H](O)[C@@H]1O</p>
            <p>inchikey: SHZGCJCMOBCMKK-SXUWKVJYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_CPD__45__10329_c">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/C6H12O5/c1-2-3(7)4(8)5(9)6(10)11-2/h2-10H,1H3/t2-,3+,4+,5-,6+/m0/s1"/>
                </rdf:Bag>
              </bqbiol:isVersionOf>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </species>
      <species metaid="M_L__45__fucose__45__protein__45__serine_c" id="M_L__45__fucose__45__protein__45__serine_c" name="a [protein]-3-O-L-fucosyl-L-serine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_GlcNAc__45__GlcA__45__Gal__45__Gal__45__Xyl__45__Protein_c" id="M_GlcNAc__45__GlcA__45__Gal__45__Gal__45__Xyl__45__Protein_c" name="&amp;alpha;-N-acetyl-D-glucosaminyl-(1-&gt;4)-&amp;beta;-D-glucosyluronate-(1-&gt;3)-&amp;beta;-D-galactosyl-(1-&gt;3)-&amp;beta;-D-galactosyl-(1-&gt;4)-&amp;beta;-D-xylosyl-[core protein]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C35H54N3O28R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CC(=O)N[C@@H]1[C@@H](O)[C@H](O)[C@@H](CO)O[C@@H]1O[C@H]1[C@H](O)[C@@H](O)[C@H](O[C@H]2[C@@H](O)[C@@H](CO)O[C@@H](O[C@H]3[C@@H](O)[C@@H](CO)O[C@@H](O[C@@H]4CO[C@@H](OC[C@H](NC([*])=O)C(=O)N[*])[C@H](O)[C@H]4O)[C@@H]3O)[C@@H]2O)O[C@@H]1C([O-])=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_GlcA__45__Gal__45__Gal__45__Xyl__45__Proteins_c" id="M_GlcA__45__Gal__45__Gal__45__Xyl__45__Proteins_c" name="&amp;beta;-D-glucosyluronate-(1-&gt;3)-&amp;beta;-D-galactosyl-(1-&gt;3)-&amp;beta;-D-galactosyl-(1-&gt;4)-&amp;beta;-D-xylosyl-[core protein]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C27H41N2O23R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: OC[C@H]1O[C@@H](O[C@@H]2CO[C@@H](OC[C@H](NC(*)=O)C(=O)N*)[C@H](O)[C@H]2O)[C@H](O)[C@@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](O[C@@H]3O[C@@H]([C@@H](O)[C@H](O)[C@H]3O)C([O-])=O)[C@H]2O)[C@H]1O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_Protein__45__hydroxyprolines_c" id="M_Protein__45__hydroxyprolines_c" name="a [protein]-trans-4-hydroxy-L-proline" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__6242_c" id="M_CPD__45__6242_c" name="a protein-O-(N-acetyl-D-glucosaminyl)-trans-4-hydroxy-L-proline" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_BETA__45__ACETYLGLUCOSAMINIDE_c" id="M_BETA__45__ACETYLGLUCOSAMINIDE_c" name="an N-acetyl-&amp;beta;-D-glucosaminyl-R" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H14NO6R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CC(=O)N[C@@H]1[C@@H](O)[C@H](O)[C@@H](CO)O[C@H]1O[*]</p>
          </body>
        </notes>
      </species>
      <species metaid="M_Holo__45__LYS2__45__peptidyl__45__carrier__45__protein_c" id="M_Holo__45__LYS2__45__peptidyl__45__carrier__45__protein_c" name="a holo-[LYS2 peptidyl-carrier-protein]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_LYS2__45__peptidyl__45__carrier__45__protein_c" id="M_LYS2__45__peptidyl__45__carrier__45__protein_c" name="an apo-[LYS2 peptidyl-carrier-protein]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Glycoprotein__45__Asn__45__oligosaccharides_c" id="M_Glycoprotein__45__Asn__45__oligosaccharides_c" name="a [glycoprotein]-L-asparagine-[oligosaccharide]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_OLIGOSACCHARIDE__45__DIPHOSPHODOLICHOL_c" id="M_OLIGOSACCHARIDE__45__DIPHOSPHODOLICHOL_c" name="dolichyl diphosphooligosaccharide" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__18085_c" id="M_CPD__45__18085_c" name="1,2-dihydro-&amp;beta;-NADP" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C21H26N7O17P3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 741.3913</p>
            <p>smiles: NC(=O)C1=CC=CN(C1)[C@@H]1O[C@H](COP([O-])(=O)OP([O-])(=O)OC[C@H]2O[C@H]([C@H](OP([O-])([O-])=O)[C@@H]2O)n2cnc3c(N)ncnc23)[C@@H](O)[C@H]1O</p>
            <p>inchikey: SNZSFAQYVLPEBZ-NNYOXOHSSA-J</p>
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        </notes>
        <annotation>
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              <bqbiol:isVersionOf>
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                </rdf:Bag>
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      <species metaid="M_CPD__45__18238_c" id="M_CPD__45__18238_c" name="carboxyphosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="CHO6P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 139.9899</p>
            <p>smiles: OP([O-])(=O)OC([O-])=O</p>
            <p>inchikey: LQQCGEGRINLHDP-UHFFFAOYSA-L</p>
          </body>
        </notes>
        <annotation>
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                </rdf:Bag>
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      <species metaid="M_CPD__45__248_c" id="M_CPD__45__248_c" name="2-formylaminobenzaldehyde" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C8H7NO2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 149.1467</p>
            <p>smiles: [H]C(=O)Nc1ccccc1C([H])=O</p>
            <p>inchikey: PVIMSPYDDGDCTG-UHFFFAOYSA-N</p>
          </body>
        </notes>
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                </rdf:Bag>
              </bqbiol:isVersionOf>
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      <species metaid="M_WATER_C__45__BOUNDARY" id="M_WATER_C__45__BOUNDARY" name="H2O" compartment="C__45__BOUNDARY" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="0" fbc:chemicalFormula="H2O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 18.0153</p>
            <p>smiles: [H]O[H]</p>
            <p>inchikey: XLYOFNOQVPJJNP-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
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            <rdf:Description rdf:about="#M_WATER_C__45__BOUNDARY">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/H2O/h1H2"/>
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      </species>
      <species metaid="M_ZN__43__2_C__45__BOUNDARY" id="M_ZN__43__2_C__45__BOUNDARY" name="Zn2+" compartment="C__45__BOUNDARY" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="2" fbc:chemicalFormula="Zn">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 65.408</p>
            <p>smiles: [Zn++]</p>
            <p>inchikey: PTFCDOFLOPIGGS-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
            <rdf:Description rdf:about="#M_ZN__43__2_C__45__BOUNDARY">
              <bqbiol:isVersionOf>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/inchi/InChI=1S/Zn/q+2"/>
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              </bqbiol:isVersionOf>
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      <species metaid="M_BIOMASS_C__45__BOUNDARY" id="M_BIOMASS_C__45__BOUNDARY" name="BIOMASS" compartment="C__45__BOUNDARY" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="true" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_CPD__45__12014_c" id="M_CPD__45__12014_c" name="6-hydroxymelatonin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H16N2O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 248.2777</p>
            <p>smiles: COc1cc2c(CCNC(C)=O)c[nH]c2cc1O</p>
            <p>inchikey: OMYMRCXOJJZYKE-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
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      <species metaid="M_N__45__ACETYL__45__5__45__METHOXY__45__TRYPTAMINE_c" id="M_N__45__ACETYL__45__5__45__METHOXY__45__TRYPTAMINE_c" name="melatonin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C13H16N2O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 232.2783</p>
            <p>smiles: COc1ccc2[nH]cc(CCNC(C)=O)c2c1</p>
            <p>inchikey: DRLFMBDRBRZALE-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
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      <species metaid="M_CPD__45__12015_c" id="M_CPD__45__12015_c" name="6-sulfatoxymelatonin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C13H15N2O6S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 327.334</p>
            <p>smiles: COc1cc2c(CCNC(C)=O)c[nH]c2cc1OS([O-])(=O)=O</p>
            <p>inchikey: QQEILXDLZRLTME-UHFFFAOYSA-M</p>
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        <annotation>
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      <species metaid="M_CPD__45__12017_c" id="M_CPD__45__12017_c" name="N-acetyl-serotonin sulfate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C12H13N2O5S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 297.308</p>
            <p>smiles: CC(=O)NCCc1c[nH]c2ccc(OS([O-])(=O)=O)cc12</p>
            <p>inchikey: UCAJZNVFRVLULS-UHFFFAOYSA-M</p>
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        <annotation>
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      </species>
      <species metaid="M_Orthophosphoric__45__Monoesters_c" id="M_Orthophosphoric__45__Monoesters_c" name="a phosphate monoester" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="O4PR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [O-]P([O-])(=O)O[*]</p>
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        </notes>
      </species>
      <species metaid="M_CPD1F__45__453_c" id="M_CPD1F__45__453_c" name="kaempferol-3-glucoside" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H19O11">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 447.3695</p>
            <p>smiles: OC[C@H]1O[C@@H](Oc2c(oc3cc([O-])cc(O)c3c2=O)-c2ccc(O)cc2)[C@H](O)[C@@H](O)[C@@H]1O</p>
            <p>inchikey: JPUKWEQWGBDDQB-QSOFNFLRSA-M</p>
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      </species>
      <species metaid="M_CPD__45__8625_c" id="M_CPD__45__8625_c" name="a [protein]-L-proline (&amp;omega; = 0)" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H8N2O2R2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [*]NC(=O)[C@@H]1CCCN1C([*])=O</p>
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        </notes>
      </species>
      <species metaid="M_Phenolic__45__Donors_c" id="M_Phenolic__45__Donors_c" name="a phenolic donor" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      </species>
      <species metaid="M_Phenoxyl__45__rad__45__of__45__phenolic__45__donors_c" id="M_Phenoxyl__45__rad__45__of__45__phenolic__45__donors_c" name="a phenoxyl radical of a phenolic donor" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      </species>
      <species metaid="M_CPD1F__45__437_c" id="M_CPD1F__45__437_c" name="quercetin-3-glucoside" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C21H19O12">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 463.3689</p>
            <p>smiles: OC[C@H]1O[C@@H](Oc2c(oc3cc([O-])cc(O)c3c2=O)-c2ccc(O)c(O)c2)[C@H](O)[C@@H](O)[C@@H]1O</p>
            <p>inchikey: OVSQVDMCBVZWGM-QSOFNFLRSA-M</p>
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      </species>
      <species metaid="M_CPD__45__17367_c" id="M_CPD__45__17367_c" name="(3R)-hydroxy-adrenoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H66N7O18P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1094.009</p>
            <p>smiles: CCCCC\C=C/C\C=C/C\C=C/C\C=C/CCC[C@@H](O)CC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: JHXLRLHTJYMVBK-DHDHVEHBSA-J</p>
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            <p>mass: 1075.993</p>
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            <p>mass: 450.5044</p>
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            <p>mass: 1041.934</p>
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        <notes>
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            <p>mass: 728.934</p>
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        <notes>
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            <p>mass: 1120.046</p>
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        <notes>
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            <p>mass: 1102.031</p>
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            <p>mass: 888.45</p>
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            <p>mass: 890.466</p>
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            <p>mass: 628.958</p>
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            <p>mass: 143.207</p>
            <p>smiles: Cc1ncsc1CCO</p>
            <p>inchikey: BKAWJIRCKVUVED-UHFFFAOYSA-N</p>
          </body>
        </notes>
        <annotation>
          <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
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        </annotation>
      </species>
      <species metaid="M_CPD__45__8529_c" id="M_CPD__45__8529_c" name="R&apos;C(R)S-S(R)CR&apos;" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Sulfhydryls_c" id="M_Sulfhydryls_c" name="R&apos;C(R)SH" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Thiopurines_c" id="M_Thiopurines_c" name="a thiopurine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
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      <species metaid="M_Thiopurine__45__Methylethers_c" id="M_Thiopurine__45__Methylethers_c" name="a thiopurine S-methylether" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H6N4S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 166.204</p>
            <p>smiles: CSc1ncnc2[nH]cnc12</p>
            <p>inchikey: UIJIQXGRFSPYQW-UHFFFAOYSA-N</p>
          </body>
        </notes>
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            <rdf:Description rdf:about="#M_Thiopurine__45__Methylethers_c">
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      <species metaid="M_D__45__ALANINE_c" id="M_D__45__ALANINE_c" name="D-alanine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C3H7NO2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 89.0932</p>
            <p>smiles: C[C@@H]([NH3+])C([O-])=O</p>
            <p>inchikey: QNAYBMKLOCPYGJ-UWTATZPHSA-N</p>
          </body>
        </notes>
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      <species metaid="M_D__45__GLT_c" id="M_D__45__GLT_c" name="D-glutamate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C5H8NO4">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 146.1219</p>
            <p>smiles: [NH3+][C@H](CCC([O-])=O)C([O-])=O</p>
            <p>inchikey: WHUUTDBJXJRKMK-GSVOUGTGSA-M</p>
          </body>
        </notes>
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            <rdf:Description rdf:about="#M_D__45__GLT_c">
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      <species metaid="M_D__45__HEXOSE__45__6__45__PHOSPHATE_c" id="M_D__45__HEXOSE__45__6__45__PHOSPHATE_c" name="D-hexose 6-phosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C6H11O9P">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 258.121</p>
            <p>smiles: OC1O[C@H](COP([O-])([O-])=O)C(O)C(O)C1O</p>
            <p>inchikey: NBSCHQHZLSJFNQ-KNZZERQRSA-L</p>
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        </notes>
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            <rdf:Description rdf:about="#M_D__45__HEXOSE__45__6__45__PHOSPHATE_c">
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      <species metaid="M_D__45__Hexoses_c" id="M_D__45__Hexoses_c" name="a D-hexose" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      <species metaid="M_CPD__45__14425_c" id="M_CPD__45__14425_c" name="(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C43H62N7O17P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1073.978</p>
            <p>smiles: CC\C=C/C\C=C/C\C=C/C\C=C/C\C=C/CCC\C=C\C(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: HGVXUTAEZALTIG-HKHRKLHHSA-J</p>
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        </notes>
        <annotation>
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        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 409.3857</p>
            <p>smiles: CC(C)(O[C@@H]1O[C@H](CO[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O)[C@@H](O)[C@H](O)[C@H]1O)C#N</p>
            <p>inchikey: FERSMFQBWVBKQK-CXTTVELOSA-N</p>
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      <species metaid="M_COBALT__45__SIROHYDROCHLORIN_c" id="M_COBALT__45__SIROHYDROCHLORIN_c" name="cobalt-sirohydrochlorin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-8" fbc:chemicalFormula="C42H36CoN4O16">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 911.69</p>
            <p>smiles: C[C@]1(CC([O-])=O)[C@H](CCC([O-])=O)C2=CC3=[N+]4C(=Cc5c(CCC([O-])=O)c(CC([O-])=O)c6C=C7[N+]8=C(C=C1N2[Co--]48n56)[C@@H](CCC([O-])=O)[C@]7(C)CC([O-])=O)C(CCC([O-])=O)=C3CC([O-])=O</p>
            <p>inchikey: XZMXJYDTAININL-QIISWYHFSA-D</p>
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            <rdf:Description rdf:about="#M_COBALT__45__SIROHYDROCHLORIN_c">
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      <species metaid="M_CPD__45__15015_c" id="M_CPD__45__15015_c" name="4-hydroxy-2-oxoglutarate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C5H4O6">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 160.0828</p>
            <p>smiles: OC(CC(=O)C([O-])=O)C([O-])=O</p>
            <p>inchikey: WXSKVKPSMAHCSG-UHFFFAOYSA-L</p>
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      <species metaid="M_3__45__OCTAPRENYL__45__4__45__HYDROXYBENZOATE_c" id="M_3__45__OCTAPRENYL__45__4__45__HYDROXYBENZOATE_c" name="3-octaprenyl-4-hydroxybenzoate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C47H69O3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 682.0495</p>
            <p>smiles: CC(C)=CCC\C(C)=C\CC\C(C)=C\CC\C(C)=C\CC\C(C)=C\CC\C(C)=C\CC\C(C)=C\CC\C(C)=C\Cc1cc(ccc1O)C([O-])=O</p>
            <p>inchikey: UTIBHEBNILDQKX-LQOKPSQISA-M</p>
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      <species metaid="M_OCTAPRENYL__45__DIPHOSPHATE_c" id="M_OCTAPRENYL__45__DIPHOSPHATE_c" name="all-trans-octaprenyl diphosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C40H65O7P2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 719.8891</p>
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            <rdf:Description rdf:about="#M_OCTAPRENYL__45__DIPHOSPHATE_c">
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      <species metaid="M_N5__45__Formyl__45__THF__45__Glu__45__N_c" id="M_N5__45__Formyl__45__THF__45__Glu__45__N_c" name="an (6S)-N5-formyl-tetrahydrofolate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C20H21N7O6R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: [H]C(=O)N1c2c(NC[C@]1([H])CNc1ccc(cc1)C(=O)N[C@@H](CCC([*])=O)C([O-])=O)nc(N)[nH]c2=O</p>
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      </species>
      <species metaid="M_Nonmethylated__45__Ribosomal__45__Protein__45__L11s_c" id="M_Nonmethylated__45__Ribosomal__45__Protein__45__L11s_c" name="a non-methylated ribosomal protein L11" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
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        </notes>
      </species>
      <species metaid="M_Methylated__45__Ribosomal__45__Protein__45__L11s_c" id="M_Methylated__45__Ribosomal__45__Protein__45__L11s_c" name="a methylated ribosomal protein L11" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Saturated__45__2__45__Lysophosphatidates_c" id="M_Saturated__45__2__45__Lysophosphatidates_c" name="a 2,3,4-saturated 2-lysophosphatidate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_3__45__hydroxy__45__cis__45__D7__45__tetraecenoyl__45__ACPs_c" id="M_3__45__hydroxy__45__cis__45__D7__45__tetraecenoyl__45__ACPs_c" name="a (3R)-3-hydroxy cis &amp;Delta;7-tetradecenoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Trans__45__D3__45__cis__45__D7__45__tetradecenoyl__45__ACPs_c" id="M_Trans__45__D3__45__cis__45__D7__45__tetradecenoyl__45__ACPs_c" name="a trans-&amp;Delta;3-cis-&amp;Delta;7-tetradecenoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Cis__45__Delta7__45__tetradecenoyl__45__ACPs_c" id="M_Cis__45__Delta7__45__tetradecenoyl__45__ACPs_c" name="a cis-&amp;Delta;7-tetradecenoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_3__45__oxo__45__cis__45__D9__45__hexadecenoyl__45__ACPs_c" id="M_3__45__oxo__45__cis__45__D9__45__hexadecenoyl__45__ACPs_c" name="a 3-oxo-cis-&amp;Delta;9-hexadecenoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_3__45__hydroxy__45__cis__45__D9__45__hexaecenoyl__45__ACPs_c" id="M_3__45__hydroxy__45__cis__45__D9__45__hexaecenoyl__45__ACPs_c" name="a (3R)-3-hydroxy cis &amp;Delta;9-hexadecenoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Trans__45__D3__45__cis__45__D9__45__hexadecenoyl__45__ACPs_c" id="M_Trans__45__D3__45__cis__45__D9__45__hexadecenoyl__45__ACPs_c" name="a trans-&amp;Delta;3-cis-&amp;Delta;9-hexadecenoyl-[acp]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_3__45__KETOACYL__45__COA_c" id="M_3__45__KETOACYL__45__COA_c" name="a 3-oxoacyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C24H33N7O18P3SR">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: CC(C)(COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12)[C@@H](O)C(=O)NCCC(=O)NCCSC(=O)CC([*])=O</p>
          </body>
        </notes>
      </species>
      <species metaid="M_CPD__45__17331_c" id="M_CPD__45__17331_c" name="(9Z,12Z,15Z,18Z,21Z)-tetracosapentaenoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H68N7O17P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1104.047</p>
            <p>smiles: CC\C=C/C\C=C/C\C=C/C\C=C/C\C=C/CCCCCCCC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: BNAMTMVBOVNNSH-AFQBPCMKSA-J</p>
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        </notes>
        <annotation>
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      <species metaid="M_CPD__45__17385_c" id="M_CPD__45__17385_c" name="(6Z,9Z,12Z,15Z,18Z,21Z)-tetracosahexaenoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H66N7O17P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1102.031</p>
            <p>smiles: CC\C=C/C\C=C/C\C=C/C\C=C/C\C=C/C\C=C/CCCCC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: KRIFZIRXAAITHR-KWFBMMABSA-J</p>
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        </notes>
        <annotation>
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      <species metaid="M_CPD__45__17386_c" id="M_CPD__45__17386_c" name="(2E,6Z,9Z,12Z,15Z,18Z,21Z)-tetracosaheptaenoyl-CoA" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C45H64N7O17P3S">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 1100.015</p>
            <p>smiles: CC\C=C/C\C=C/C\C=C/C\C=C/C\C=C/C\C=C/CC\C=C\C(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP([O-])([O-])=O)n1cnc2c(N)ncnc12</p>
            <p>inchikey: NVOWZIBKQIWTDG-ADUCOSNASA-J</p>
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        </notes>
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      <species metaid="M_CPD__45__710_c" id="M_CPD__45__710_c" name="campestanol" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C28H50O">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 402.696</p>
            <p>smiles: [H][C@@]1(CC[C@@]2([H])[C@]3([H])CC[C@@]4([H])C[C@@H](O)CC[C@]4(C)[C@@]3([H])CC[C@]12C)[C@H](C)CC[C@@H](C)C(C)C</p>
            <p>inchikey: ARYTXMNEANMLMU-ATEDBJNTSA-N</p>
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      <species metaid="M_CPD__45__14596_c" id="M_CPD__45__14596_c" name="neolinustatin" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C17H29NO11">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 423.4123</p>
            <p>smiles: CC[C@@](C)(O[C@@H]1O[C@H](CO[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O)[C@@H](O)[C@H](O)[C@H]1O)C#N</p>
            <p>inchikey: WOSYVGNDRYBQCQ-BARGLTKPSA-N</p>
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      <species metaid="M_CPD__45__3617_c" id="M_CPD__45__3617_c" name="decanoate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C10H19O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 171.2572</p>
            <p>smiles: CCCCCCCCCC([O-])=O</p>
            <p>inchikey: GHVNFZFCNZKVNT-UHFFFAOYSA-M</p>
          </body>
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      <species metaid="M_CPD__45__10806_c" id="M_CPD__45__10806_c" name="4-hydroxy-2-nonenal" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C9H16O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 156.2221</p>
            <p>smiles: [H]C(=CC=O)C(O)CCCCC</p>
            <p>inchikey: JVJFIQYAHPMBBX-FNORWQNLSA-N</p>
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      <species metaid="M_HIS__45__tRNAs_c" id="M_HIS__45__tRNAs_c" name="a tRNAhis" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
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      <species metaid="M_Charged__45__HIS__45__tRNAs_c" id="M_Charged__45__HIS__45__tRNAs_c" name="an L-histidyl-[tRNAhis]" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
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      <species metaid="M_UROCANATE_c" id="M_UROCANATE_c" name="urocanate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-1" fbc:chemicalFormula="C6H5N2O2">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 137.1166</p>
            <p>smiles: [O-]C(=O)\C=C\c1c[nH]cn1</p>
            <p>inchikey: LOIYMIARKYCTBW-OWOJBTEDSA-M</p>
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        </notes>
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      <species metaid="M_HISTAMINE_c" id="M_HISTAMINE_c" name="histamine" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="C5H10N3">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>mass: 112.1525</p>
            <p>smiles: [NH3+]CCc1c[nH]cn1</p>
            <p>inchikey: NTYJJOPFIAHURM-UHFFFAOYSA-O</p>
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        </annotation>
      </species>
      <species metaid="M_Ribonucleoside__45__Monophosphates_c" id="M_Ribonucleoside__45__Monophosphates_c" name="a ribonucleoside 5&apos;-monophosphate" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml"/>
        </notes>
      </species>
      <species metaid="M_Ribonucleosides_c" id="M_Ribonucleosides_c" name="a ribonucleoside" compartment="c" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C5H9O4R">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>smiles: OC[C@H]1O[C@@H]([*])[C@H](O)[C@@H]1O</p>
          </body>
        </notes>
      </species>
    </listOfSpecies>
    <listOfReactions>
      <reaction id="R_1__45__ACYLGLYCEROL__45__3__45__P__45__ACYLTRANSFER__45__RXN" name="1-acyl-sn-glycerol-3-phosphate acyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_003240) or (Ec-26_001280) or (Ec-02_006160) or (Ec-12_004670)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5981 , PWY0-1319</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ACYL__45__ACP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACYL__45__SN__45__GLYCEROL__45__3P_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_L__45__PHOSPHATIDATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_1__45__PHOSPHATIDYLINOSITOL__45__3__45__KINASE__45__RXN" name="1-phosphatidylinositol-3-kinase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-04_003810) or (Ec-12_006380)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6352</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__1__45__phosphatidyl__45__inositols_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__177_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_1__45__PHOSPHATIDYLINOSITOL__45__KINASE__45__RXN" name="1-phosphatidylinositol 4-kinase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_009510)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6352 , PWY-6351</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__1__45__phosphatidyl__45__inositols_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__1108_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_1__46__1__46__1__46__145__45__RXN" name="3-beta-hydroxy-delta5-steroid dehydrogenase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_002740) or (Ec-15_000670) or (Ec-21_001850)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_3b__45__hydroxy__45__D5__45__steroids_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__oxo__45__D5__45__steroids_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_1__46__1__46__1__46__170__45__RXN" name="3-beta hydroxysteroid dehydrogenase/isomerase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_001850)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD__45__P__45__OR__45__NOP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__5846_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_4__45__ALPHA__45__METHYL__45__5__45__ALPHA__45__CHOLEST__45__7__45__EN__45__3__45__ON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH__45__P__45__OR__45__NOP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_1__46__1__46__1__46__178__45__RXN" name="1.1.1.178-RXN" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: ILEUDEG-PWY , PWY-5109</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__METHYL__45__3__45__HYDROXY__45__BUTYRYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_2__45__METHYL__45__ACETO__45__ACETYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_1__46__1__46__1__46__271__45__RXN" name="1.1.1.271-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_003130)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-66</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GDP__45__4__45__DEHYDRO__45__6__45__DEOXY__45__D__45__MANNOSE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__13118_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_1__46__1__46__1__46__34__45__RXN" name="hydroxymethylglutaryl-CoA reductase (NADPH)" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-08_002990) or (Ec-03_000570) or (Ec-03_000580) or (Ec-27_005710)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-922 , PWY-7524 , PWY-6174 , PWY-7391</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_MEVALONATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_3__45__HYDROXY__45__3__45__METHYL__45__GLUTARYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_1__46__1__46__1__46__39__45__RXN" name="malate dehydrogenase (decarboxylating) (NAD+)" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-07_002070) or (Ec-07_002060) or (Ec-01_003680)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7686 , GLUCONEO-PWY , PWY-3641 , PWY-7118 , PWY-7384 , PWY-7115</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_MAL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PYRUVATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_1__46__1__46__1__46__8__45__RXN" name="glycerol-3-phosphate dehydrogenase [NAD+]" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_006990) or (Ec-19_001930) or (Ec-19_004200)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7385 , PWY-7411 , PWY-6118</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GLYCEROL__45__3P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_DIHYDROXY__45__ACETONE__45__PHOSPHATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_1__46__10__46__2__46__2__45__RXN" name="Cytochrome c1" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_002540) or (Ec-18_002810) or (Ec-25_001440) or (Ec-21_004500) or (Ec-08_003040)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7279 , PWY-7082 , PWY-3781</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Cytochromes__45__C__45__Oxidized_e" stoichiometry="2" constant="false"/>
          <speciesReference species="M_Ubiquinols_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_e" stoichiometry="2" constant="false"/>
          <speciesReference species="M_Ubiquinones_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Cytochromes__45__C__45__Reduced_e" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_1__46__11__46__1__46__12__45__RXN" name="1.11.1.12-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-4081</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_A__45__LIPID__45__HYDROPEROXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLUTATHIONE_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXIDIZED__45__GLUTATHIONE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Lipid__45__hydroxy__45__fatty__45__acids_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_1__46__11__46__1__46__15__45__RXN" name="Peroxiredoxin, AhpC-type" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_002340) or (Ec-21_005650)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Alkyl__45__Hydro__45__Peroxides_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROT__45__CYS_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Alcohols_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Protein__45__Disulfides_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_1__46__14__46__11__46__18__45__RXN" name="Phytanoyl-CoA dioxygenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_001740) or (Ec-23_003040) or (Ec-01_011990) or (Ec-22_003660)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__206_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_2__45__HYDROXYPHYTANOYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SUC_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_1__46__14__46__11__46__2__45__RXN" name="Arginine/Asparagine/Proline hydroxylase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_007120) or (Ec-24_001040) or (Ec-06_004630) or (Ec-12_001090) or (Ec-11_002580) or (Ec-08_002170) or (Ec-12_005020) or (Ec-07_006010) or (Ec-06_002940) or (Ec-08_000690) or (Ec-23_001510) or (Ec-26_000290)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROCOLLAGEN__45__L__45__PROLINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__6321_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SUC_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_1__46__14__46__13__46__70__45__RXN" name="Cytochrome P450" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_006240)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-2541</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="3" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="3" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_OBTUSIFOLIOL_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="4" constant="false"/>
          <speciesReference species="M_FORMATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ALPHA__45__METHYL__45__5__45__ALPHA__45__ERGOSTA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="3" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_1__46__14__46__13__46__79__45__RXN" name="ent-kaurenoate monooxygenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-00_005850) or (Ec-10_006240) or (Ec-00_005820)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-5034 , PWY-5047</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD1F__45__132_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD1F__45__136_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_1__46__14__46__13__46__8__45__RXN" name="N,N-dimethylaniline monooxygenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-00_002320) or (Ec-11_003800) or (Ec-06_002080) or (Ec-01_005560) or (Ec-06_000440) or (Ec-25_003590)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NN__45__DIMETHYLANILINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NN__45__DIMETHYLANILINE__45__N__45__OXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_1__46__14__46__19__46__1__45__RXN" name="stearoyl-CoA desaturase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_001950)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5996</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_FERROCYTOCHROME__45__B5_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_STEAROYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_OLEOYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FERRICYTOCHROME__45__B5_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_1__46__14__46__19__46__3__45__RXN" name="Cytochrome b5-like heme/steroid binding domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-24_002300)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6000</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_FERROCYTOCHROME__45__B5_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_CPD__45__18_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_FERRICYTOCHROME__45__B5_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_GAMMA__45__LINOLENOYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_1__46__14__46__21__46__6__45__RXN" name="Fatty acid hydroxylase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_003780)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY66-341 , PWY66-3</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__4186_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_FERROCYTOCHROME__45__B5_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_FERRICYTOCHROME__45__B5_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_CPD__45__4187_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_1__46__17__46__4__46__2__45__RXN" name="ribonucleoside-triphosphate reductase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-04_006460)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Deoxy__45__Ribonucleoside__45__Triphosphates_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Ox__45__Thioredoxin_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Red__45__Thioredoxin_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Ribonucleoside__45__Triphosphates_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_1__46__18__46__1__46__2__45__RXN" name="ferredoxin-NADP+ reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_002800)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-101 , PWY-7230</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Reduced__45__ferredoxins_e" stoichiometry="2" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Oxidized__45__ferredoxins_e" stoichiometry="2" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_1__46__2__46__1__46__13__45__RXN" name="1.2.1.13-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: CALVIN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DPG_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_GAP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_1__46__2__46__1__46__25__45__RXN" name="Branched chain alpha-keto acid dehydrogenase E1 beta subunit" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_009010)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: VALDEG-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_2__45__KETO__45__ISOVALERATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ISOBUTYRYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_1__46__2__46__1__46__27__45__RXN" name="Methylmalonate Semialdehyde Dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_003810) or (Ec-06_003440)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5642</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__12179_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_HCO3_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROPIONYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_1__46__2__46__1__46__31__45__RXN" name="1.2.1.31-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: LYSINE-DEG1-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD__45__P__45__OR__45__NOP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ALLYSINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__468_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_NADH__45__P__45__OR__45__NOP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_1__46__2__46__1__46__65__45__RXN" name="1.2.1.65-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5427</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SALICYLALDEHYDE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_CPD__45__110_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_1__46__2__46__4__46__4__45__RXN" name="Dehydrogenase, E1 component" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_006360) or (Ec-06_009010)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5046</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_BCAA__45__dehydrogenase__45__lipoyl_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__KETO__45__ISOVALERATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_BCAA__45__dehydrogenase__45__2MP__45__DH__45__lipoyl_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_1__46__21__46__3__46__1__45__RXN" name="Isopenicillin N synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-08_003510)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5629</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_N__45__5S__45__5__45__AMINO__45__5__45__CARBOXYPENTANOYL__45__L__45__CY_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ISOPENICILLIN__45__N_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_1__46__3__46__1__46__9__45__RXN" name="Glucose/ribitol dehydrogenase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_002470)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACYL__45__ACP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_TRANS__45__D2__45__ENOYL__45__ACP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_1__46__3__46__7__46__3__45__RXN" name="Ferredoxin-dependent bilin reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-22_000060)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7579 , PWY-5915</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_1516__45__DIHYDROBILIVERDIN_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_Reduced__45__ferredoxins_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_3Z__45__PHYCOERYTHROBILIN_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Oxidized__45__ferredoxins_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_1__46__3__46__7__46__4__45__RXN" name="1.3.7.4-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-22_000060)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-7170</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_BILIVERDINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Reduced__45__ferredoxins_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_3Z__45__PHYTOCHROMOBILIN_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Oxidized__45__ferredoxins_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_1__46__3__46__99__46__5__45__RXN" name="3-oxo-5-alpha-steroid 4-dehydrogenase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_006180)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__Oxo__45__5__45__Alpha__45__Steroids_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_3__45__Oxo__45__Delta__45__4__45__Steroids_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_1__46__5__46__1__46__15__45__RXN" name="1.5.1.15-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-2201</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_METHYLENE__45__THF__45__GLU__45__N_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_5__45__10__45__METHENYL__45__THF__45__GLU__45__N_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_1__46__5__46__1__46__19__45__RXN" name="possible NAD/NADP octopine/nopaline dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_001890)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ARG_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__308_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_1__46__5__46__1__46__20__45__RXN" name="methylenetetrahydrofolate reductase (NAD(P)H)" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-08_003880) or (Ec-03_002180)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-2201 , PWY-3841 , 1CMET2-PWY , CODH-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_METHYLENE__45__THF__45__GLU__45__N_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_5__45__METHYL__45__THF__45__GLU__45__N_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_1__46__5__46__1__46__20__45__RXN__45__5__45__METHYL__45__THF__47__NAD__47____47__METHYLENE__45__THF__47__NADH__47__PROTON__46__44__46__" name="1.5.1.20-RXN-5-METHYL-THF/NAD//METHYLENE-THF/NADH/PROTON.44." reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_METHYLENE__45__THF_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_5__45__METHYL__45__THF_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_1__46__5__46__1__46__8__45__RXN" name="1.5.1.8-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: LYSINE-DEG1-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_LYS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SACCHAROPINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_1__46__5__46__1__46__9__45__RXN" name="Saccharopine dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-07_005660)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: LYSINE-DEG1-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SACCHAROPINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ALLYSINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLT_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_1__46__5__46__5__46__1__45__RXN" name="Electron transfer flavoprotein-ubiquinone oxidoreductase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-23_002110)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Ubiquinones_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ETF__45__Reduced_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Ubiquinols_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ETF__45__Oxidized_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_1__46__6__46__5__46__4__45__RXN" name="monodehydroascorbate reductase (NADH)" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-22_003850) or (Ec-26_002470)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6370</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__318_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ASCORBATE_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_1__46__8__46__1__46__4__45__RXN" name="dihydrolipoamide dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_004160) or (Ec-25_000020)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Dihydro__45__Lipoyl__45__Proteins_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Lipoyl__45__Protein__45__N6__45__lipoyllysine_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_1__46__8__46__3__46__5__45__RXN" name="prenylcysteine oxidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_001550)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_S__45__PRENYL__45__L__45__CYSTEINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PRENAL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HYDROGEN__45__PEROXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CYS_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_1__46__8__46__4__46__12__45__RXN" name="peptide-methionine (R)-S-oxide reductase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_006120) or (Ec-05_006220) or (Ec-28_000030) or (Ec-00_006660) or (Ec-12_004320)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Ox__45__Thioredoxin_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Protein__45__L__45__methionine_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Protein__45__L__45__methionine__45__R__45__S__45__oxides_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Red__45__Thioredoxin_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_1__46__8__46__4__46__14__45__RXN" name="Methionine-R-sulfoxide reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-05_006220)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__8990_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Red__45__Thioredoxin_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Ox__45__Thioredoxin_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MET_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_1__46__8__46__4__46__7__45__RXN" name="Thiol oxidoreductase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_005300)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Xanthine__45__dehydrogenases_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXIDIZED__45__GLUTATHIONE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Xanthine__45__oxidases_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLUTATHIONE_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_1__46__8__46__4__46__8__45__RXN" name="Phosphoadenosine phosphosulphate reductase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_002130)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: SO4ASSIM-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_3__45__5__45__ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_Ox__45__Thioredoxin_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SO3_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PAPS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Red__45__Thioredoxin_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_1__46__8__46__5__46__1__45__RXN" name="Thioredoxin-like fold" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_003740)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-2261 , PWY-6370</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GLUTATHIONE_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_L__45__DEHYDRO__45__ASCORBATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_OXIDIZED__45__GLUTATHIONE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ASCORBATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_13__45__BETA__45__GLUCAN__45__SYNTHASE__45__RXN" name="1,3-beta-glucan synthase, family GT48" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-08_004910) or (Ec-08_004920) or (Ec-00_000820) or (Ec-12_000870) or (Ec-08_004800) or (Ec-28_002440)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6773</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_1__45__3__45__beta__45__D__45__Glucans_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__12575_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_1__45__3__45__beta__45__D__45__Glucans_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_UDP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_1TRANSKETO__45__RXN" name="1TRANSKETO-RXN" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-20_002600)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: P124-PWY , PWY-5723 , NONOXIPENT-PWY , PWY-1861 , P185-PWY , CALVIN-PWY , P21-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GAP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_D__45__SEDOHEPTULOSE__45__7__45__P_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_RIBOSE__45__5P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_XYLULOSE__45__5__45__PHOSPHATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__45__AMINOADIPATE__45__AMINOTRANSFERASE__45__RXN" name="2-AMINOADIPATE-AMINOTRANSFERASE-RXN" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5283 , LYSINE-AMINOAD-PWY , LYSINE-DEG1-PWY , PWY66-425 , PWY-3081</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__468_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_2K__45__ADIPATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLT_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__45__DEHYDROPANTOATE__45__REDUCT__45__RXN" name="2-dehydropantoate 2-reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-14_006010)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6654 , PANTO-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__DEHYDROPANTOATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__PANTOATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__45__ISOPROPYLMALATESYN__45__RXN" name="2-Isopropylmalate synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-28_002630) or (Ec-18_000460)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6871 , LEUSYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_2__45__KETO__45__ISOVALERATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACETYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_3__45__CARBOXY__45__3__45__HYDROXY__45__ISOCAPROATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__45__KETO__45__ADIPATE__45__DEHYDROG__45__RXN" name="2-KETO-ADIPATE-DEHYDROG-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_004160) or (Ec-25_000020)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: LYSINE-DEG1-PWY , PWY66-425 , PWY-5652</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2K__45__ADIPATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLUTARYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__45__METHYLACYL__45__COA__45__DEHYDROGENASE__45__RXN" name="2-METHYLACYL-COA-DEHYDROGENASE-RXN" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: ILEUDEG-PWY , PWY-5109</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ETF__45__Oxidized_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__METHYL__45__BUTYRYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ETF__45__Reduced_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__1083_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__45__OCTAPRENYL__45__METHOXY__45__BENZOQ__45__METH__45__RXN" name="UbiE/COQ5 methyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-08_006620)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6708 , PWY-5870</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OCTAPRENYL__45__METHOXY__45__BENZOQUINONE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_S__45__ADENOSYLMETHIONINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADENOSYL__45__HOMO__45__CYS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OCTAPRENYL__45__METHYL__45__METHOXY__45__BENZQ_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__1__46__1__46__100__45__RXN" name="protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-07_003770)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_S__45__ADENOSYLMETHIONINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTEIN__45__C__45__TERMINAL__45__S__45__ETC__45__CYSTEINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADENOSYL__45__HOMO__45__CYS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTEIN__45__C__45__TERMINAL__45__S__45__FARNESYL__45__L__45__CYSTEINE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__1__46__1__46__113__45__RXN" name="site-specific DNA-methyltransferase (cytosine-N4-specific)" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-00_002200) or (Ec-04_006290) or (Ec-09_001730)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_DNA__45__Cytosines_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_S__45__ADENOSYLMETHIONINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_DNA__45__N4__45__Methylcytosine_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADENOSYL__45__HOMO__45__CYS_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__1__46__1__46__17__45__RXN" name="2.1.1.17-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
            <p>SUBSYSTEM: PWY-6825</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_L__45__1__45__PHOSPHATIDYL__45__ETHANOLAMINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_S__45__ADENOSYLMETHIONINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADENOSYL__45__HOMO__45__CYS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__405_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__1__46__1__46__19__45__RXN" name="2.1.1.19-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-2201</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__7670_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_5__45__METHYL__45__THF__45__GLU__45__N_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_THF__45__GLU__45__N_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_TRIMETHYLSULFONIUM_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__1__46__1__46__71__45__RXN" name="Phospholipid methyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-24_001260) or (Ec-18_002350) or (Ec-08_004940)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY4FS-3 , PWY-6825</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_S__45__ADENOSYLMETHIONINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__405_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__160_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADENOSYL__45__HOMO__45__CYS_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__1__46__1__46__72__45__RXN" name="EsV-1-129" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_005560)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_DNA__45__Adenines_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_S__45__ADENOSYLMETHIONINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_DNA__45__6__45__Methyl__45__Amino__45__Purines_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADENOSYL__45__HOMO__45__CYS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__1__46__1__46__77__45__RXN" name="protein-L-isoaspartate (D-aspartate) O-methyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_008440) or (Ec-21_003440)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_S__45__ADENOSYLMETHIONINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTEIN__45__L__45__BETA__45__ISOASPARTATES_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADENOSYL__45__HOMO__45__CYS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTEIN__45__L__45__BETA__45__ISOSPARTATE__45__METHYL__45__ESTERS_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__1__46__1__46__79__45__RXN" name="cyclopropane-fatty-acyl-phospholipid synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-28_001010)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY0-541</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_S__45__ADENOSYLMETHIONINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Phospholipid__45__Olefinic__45__Fatty__45__Acids_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADENOSYL__45__HOMO__45__CYS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Phospholipid__45__Cyclopropane__45__Fatty__45__Acids_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__3__46__1__46__168__45__RXN" name="Branched chain alpha-keto acid dehydrogenase E1 beta subunit" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_009010)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5046</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_BCAA__45__dehydrogenase__45__DH__45__lipoyl_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ISOBUTYRYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_BCAA__45__dehydrogenase__45__2MP__45__DH__45__lipoyl_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__3__46__1__46__176__45__RXN" name="2.3.1.176-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_003940)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-6061</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__7257_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__202_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROPIONYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__3__46__1__46__179__45__RXN" name="2.3.1.179-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
            <p>SUBSYSTEM: PWY-5973</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MALONYL__45__ACP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Palmitoleoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__oxo__45__cis__45__vaccenoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__3__46__1__46__23__45__RXN" name="Lyso-phosphatidylcholine acyltransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_002160) or (Ec-27_004770)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7470 , PWY-6803</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_2__45__Lysophosphatidylcholines_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PHOSPHATIDYLCHOLINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__3__46__1__46__41__45__RXN" name="Thiolase-like, subgroup" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_000640) or (Ec-12_000650) or (Ec-27_003480) or (Ec-27_002090)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACYL__45__ACP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MALONYL__45__ACP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_B__45__KETOACYL__45__ACP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__3__46__1__46__97__45__RXN" name="glycylpeptide N-tetradecanoyltransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-07_007870)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_TETRADECANOYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLYCYL__45__PEPTIDE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_N__45__TETRADECANOYLGLYCYL__45__PEPTIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__3__46__2__46__15__45__RXN" name="Phytochelatin synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-14_005100)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6745</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Poly__45__Gamma__45__Glutamylcysteine__45__Glycines_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLUTATHIONE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_GLY_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Poly__45__Gamma__45__Glutamylcysteine__45__Glycines_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__4__46__1__46__101__45__RXN" name="Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase, family GT13" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-08_002720) or (Ec-23_001370)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7426</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Mannosyl5__45__N__45__Glycans_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_UDP__45__N__45__ACETYL__45__D__45__GLUCOSAMINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_UDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Mannosyl5__45__N__45__acetyl__45__glucosamine2__45__R_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__4__46__1__46__117__45__RXN" name="Dolichyl-phosphate beta-glucosyltransferase, family GT2" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_003490)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__12575_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DOLICHOLP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_UDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__166_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__4__46__1__46__119__45__RXN" name="DAD/Ost2" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-07_004230) or (Ec-14_004370) or (Ec-00_007050) or (Ec-22_002490) or (Ec-00_007060) or (Ec-10_002870) or (Ec-09_000810)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__18076_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Protein__45__L__45__Asparagine_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__224_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__18077_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__4__46__1__46__141__45__RXN" name="2.4.1.141-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__190_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_UDP__45__N__45__ACETYL__45__D__45__GLUCOSAMINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_UDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NN__45__DIACETYLCHITOBIOSYLDIPHOSPHODOLICHO_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__4__46__1__46__142__45__RXN" name="Chitobiosyldiphosphodolichol beta-mannosyltransferase, family GT33" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_000280)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NN__45__DIACETYLCHITOBIOSYLDIPHOSPHODOLICHO_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GDP__45__MANNOSE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ALPHA__45__D__45__MANNOSYLCHITOBIO_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GDP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__4__46__1__46__143__45__RXN" name="2.4.1.143-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7426</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_UDP__45__N__45__ACETYL__45__D__45__GLUCOSAMINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__N__45__linked__45__Glycan_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_2__45__2__45__N__45__linked__45__Glycan_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_UDP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__4__46__1__46__144__45__RXN" name="2.4.1.144-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7426</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_UDP__45__N__45__ACETYL__45__D__45__GLUCOSAMINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__2__45__N__45__linked__45__Glycan_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_UDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__4__45__2__45__N__45__linked__45__Glycan_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__4__46__1__46__145__45__RXN" name="Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase, family GT54" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-07_006930)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7426</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_UDP__45__N__45__ACETYL__45__D__45__GLUCOSAMINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__2__45__N__45__linked__45__Glycan_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_UDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_24__45__2__45__N__45__linked__45__Glycan_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__4__46__1__46__149__45__RXN" name="2.4.1.149-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7434</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_UDP__45__N__45__ACETYL__45__D__45__GLUCOSAMINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_B__45__Gal__45__14__45__NacGlc__45__R_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_UDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_N__45__ACETYL__45__BETA__45__D__45__GLUCOSAMINYL__45__13__45__ETCETERA_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__4__46__1__46__150__45__RXN" name="2.4.1.150-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7434</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_UDP__45__N__45__ACETYL__45__D__45__GLUCOSAMINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_B__45__Gal__45__14__45__NacGlc__45__R_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_N__45__ACETYL__45__BETA__45__D__45__GLUCOSAMINYL__45__16__45__ETCETERA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_UDP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__4__46__1__46__151__45__RXN" name="galactosyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_000190) or (Ec-08_004370) or (Ec-14_005280) or (Ec-01_006680) or (Ec-03_002280) or (Ec-00_004510) or (Ec-24_000030)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7434</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__14553_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_B__45__Gal__45__14__45__NacGlc__45__R_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_UDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ALPHA__45__D__45__GALACTOSYL__45__ETCETERA__45__GLUCOSAMINYL_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__4__46__1__46__155__45__RXN" name="2.4.1.155-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7426</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_24__45__2__45__N__45__linked__45__Glycan_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_UDP__45__N__45__ACETYL__45__D__45__GLUCOSAMINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_UDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_24__45__26__45__N__45__linked__45__Glycan_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__4__46__1__46__198__45__RXN" name="phosphatidylinositol N-acetylglucosaminyltransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_003950) or (Ec-00_000550) or (Ec-19_004740) or (Ec-04_005970) or (Ec-14_001090)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_L__45__1__45__phosphatidyl__45__inositols_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_UDP__45__N__45__ACETYL__45__D__45__GLUCOSAMINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__452_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_UDP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__4__46__1__46__201__45__RXN" name="2.4.1.201-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7426</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_UDP__45__N__45__ACETYL__45__D__45__GLUCOSAMINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_24__45__26__45__N__45__linked__45__Glycan_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_UDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_24__45__246__45__N__45__linked__45__Glycan_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__4__46__1__46__221__45__RXN" name="GDP-fucose protein O-fucosyltransferase, family GT65" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-09_003680) or (Ec-21_001480) or (Ec-08_004280)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Protein__45__L__45__serines_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__13118_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_L__45__fucose__45__protein__45__serine_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GDP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__4__46__1__46__223__45__RXN" name="acetylglucosaminyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_004080) or (Ec-15_002870) or (Ec-14_005460) or (Ec-23_000390) or (Ec-23_003230) or (Ec-08_002720) or (Ec-14_003840)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6558</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_UDP__45__N__45__ACETYL__45__D__45__GLUCOSAMINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GlcA__45__Gal__45__Gal__45__Xyl__45__Proteins_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GlcNAc__45__GlcA__45__Gal__45__Gal__45__Xyl__45__Protein_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_UDP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__4__46__1__46__229__45__RXN" name="[Skp1-protein]-hydroxyproline N-acetylglucosaminyltransferase, family GT60" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-14_003270) or (Ec-12_003420) or (Ec-01_009040)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Protein__45__hydroxyprolines_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_UDP__45__N__45__ACETYL__45__D__45__GLUCOSAMINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_UDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__6242_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__4__46__1__46__36__45__RXN" name="alpha,alpha-trehalose-phosphate synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-11_002530)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: TREHALOSESYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GDP__45__D__45__GLUCOSE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ALPHA__45__GLC__45__6__45__P_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_TREHALOSE__45__6P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GDP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__4__46__1__46__38__45__RXN" name="2.4.1.38-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7434</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_BETA__45__ACETYLGLUCOSAMINIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__14553_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_B__45__Gal__45__14__45__NacGlc__45__R_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_UDP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__4__46__1__46__46__45__RXN" name="Monogalactosyldiacylglycerol synthase, family GT28" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-20_002530) or (Ec-26_002880) or (Ec-26_002980)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-401</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_DIACYLGLYCEROL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__14553_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_D__45__Galactosyl__45__12__45__diacyl__45__glycerols_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_UDP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__4__46__1__46__67__45__RXN" name="2.4.1.67-RXN" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-17_000840) or (Ec-26_006290)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-5337</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__458_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__1099_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__170_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MYO__45__INOSITOL_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__4__46__1__46__83__45__RXN" name="Dolichol-phosphate mannosyltransferase, family GT2" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_007940)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GDP__45__MANNOSE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DOLICHOLP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__171_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GDP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__4__46__2__46__38__45__RXN" name="Glycosyltransferase AER61, uncharacterised" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-07_002290)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_UDP__45__D__45__XYLOSE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__2__45__N__45__linked__45__Glycan_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_UDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_N4__45__N__45__ACETYL__45__BETA__45__D__45__GLUCOSAMINYL__45__X_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__4__46__99__46__6__45__RXN" name="2.4.99.6-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7434</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CMP__45__N__45__ACETYL__45__NEURAMINATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_B__45__Gal__45__14__45__NacGlc__45__R_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ALPHA__45__N__45__ACETYLNEURAMINYL__45__23__45__BETA__45__ETCETER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__5__46__1__46__19__45__RXN" name="3-Phosphoshikimate 1-Carboxyvinyltransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_000800)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6163</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_SHIKIMATE__45__5P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PHOSPHO__45__ENOL__45__PYRUVATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_3__45__ENOLPYRUVYL__45__SHIKIMATE__45__5P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__5__46__1__46__32__45__RXN" name="Phytoene synthase; chloroplast precursor" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-04_002810)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6475 , PWY-6287</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GERANYLGERANYL__45__PP_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__464_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__5__46__1__46__39__45__RXN" name="4-hydroxybenzoate nonaprenyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-00_007360)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5871 , PWY-6978 , PWY-5856</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_4__45__hydroxybenzoate_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SOLANESYL__45__PYROPHOSPHATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NONAPRENYL__45__4__45__HYDROXYBENZOATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__5__46__1__46__41__45__RXN" name="Prenyltransferase/squalene oxidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-07_006170)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6349</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_SN__45__GLYCEROL__45__1__45__PHOSPHATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GERANYLGERANYL__45__PP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_SN__45__GERANYLGERANYLGLYCERYL__45__1__45__PHOSPHATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__5__46__1__46__46__45__RXN" name="Deoxyhypusine synthase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_002000)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_EIF5A__45__LYSINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SPERMIDINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__313_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__9973_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__5__46__1__46__58__45__RXN" name="Protein farnesyltransferase subunit beta" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-28_001820)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_FARNESYL__45__PP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROT__45__CYS_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Protein__45__S__45__farnesyl__45__L__45__cysteines_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__6__46__1__46__14__45__RXN__45__P__45__HYDROXY__45__PHENYLPYRUVATE__47__ASN__47____47__2__45__OXOSUCCINAMATE__47__TYR__46__51__46__" name="2.6.1.14-RXN-P-HYDROXY-PHENYLPYRUVATE/ASN//2-OXOSUCCINAMATE/TYR.51." reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ASN_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_P__45__HYDROXY__45__PHENYLPYRUVATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_2__45__OXOSUCCINAMATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_TYR_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__6__46__1__46__22__45__RXN" name="2.6.1.22-RXN" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: VALDEG-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__466_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CH3__45__MALONATE__45__S__45__ALD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLT_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__6__46__1__46__7__45__RXN" name="Aminotransferase, class I/classII" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-00_001230)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6309</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__14736_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__476_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLT_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__7__46__1__46__127__45__RXN" name="inositol-1,4,5-trisphosphate 3-kinase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_003350)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6361 , PWY-6362 , PWY-6364</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_INOSITOL__45__1__45__4__45__5__45__TRISPHOSPHATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__506_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__7__46__1__46__133__45__RXN" name="inositol-1,3,4-trisphosphate 5-kinase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-05_003010)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6554 , PWY-6365 , PWY-6362 , PWY-6366</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_INOSITOL__45__1__45__3__45__4__45__TRIPHOSPHATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__505_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__7__46__1__46__134__45__RXN" name="inositol tetrakisphosphate 1-kinase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-05_003010)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6365 , PWY-4661</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__178_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__1107_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__7__46__1__46__139__45__RXN" name="inositol-1,3,4-trisphosphate 5-kinase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-05_003010)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6554</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_INOSITOL__45__1__45__3__45__4__45__TRIPHOSPHATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__506_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__7__46__1__46__140__45__RXN" name="2.7.1.140-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6372 , PWY-6365 , PWY-6554 , PWY-6362 , PWY-6366</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__505_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__1107_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__7__46__1__46__148__45__RXN" name="GHMP kinase N-terminal domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_001370)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7560 , NONMEVIPP-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_4__45__CYTIDINE__45__5__45__DIPHOSPHO__45__2__45__C_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__PHOSPHO__45__4__45__CYTIDINE__45__5__45__DIPHOSPHO__45__2__45__C__45__MET_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__7__46__1__46__149__45__RXN" name="2.7.1.149-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6367 , PWY-6351</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_1__45__PHOSPHATIDYL__45__1D__45__MYO__45__INOSITOL__45__5__45__PHOSPHA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PHOSPHATIDYL__45__MYO__45__INOSITOL__45__45__45__BISPHOSPHA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__7__46__1__46__150__45__RXN" name="2.7.1.150-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6352</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__177_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_1__45__PHOSPHATIDYL__45__1D__45__MYO__45__INOSITOL__45__35__45__BISPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__7__46__1__46__153__45__RXN" name="2.7.1.153-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6352</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PHOSPHATIDYL__45__MYO__45__INOSITOL__45__45__45__BISPHOSPHA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PHOSPHATIDYLINOSITOL__45__345__45__TRIPHOSPHATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__7__46__1__46__154__45__RXN" name="2.7.1.154-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6352</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__1108_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_1__45__PHOSPHATIDYL__45__1D__45__MYO__45__INOSITOL__45__34__45__BISPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__7__46__1__46__160__45__RXN" name="2.7.1.160-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6689</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__phospho__45__ligated__45__tRNA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__9007_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Spliced__45__tRNA__45__precursor_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NIACINAMIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__7__46__1__46__68__45__RXN" name="Phosphatidylinositol-4-phosphate 5-kinase, core" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_002790) or (Ec-04_001040) or (Ec-05_001250) or (Ec-19_000710) or (Ec-13_001240)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6352 , PWY-6351</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__1108_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PHOSPHATIDYL__45__MYO__45__INOSITOL__45__45__45__BISPHOSPHA_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__7__46__10__46__1__45__RXN" name="protein serine/threonine/tyrosine kinase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-28_002290) or (Ec-22_000610) or (Ec-07_002880) or (Ec-01_000110) or (Ec-04_001290) or (Ec-09_002640) or (Ec-07_001020) or (Ec-27_005300) or (Ec-15_004950) or (Ec-20_000940)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Protein__45__Tyrosines_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Protein__45__tyrosine__45__phosphates_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__7__46__11__46__2__45__RXN" name="Branched-chain alpha-ketoacid dehydrogenase kinase/Pyruvate dehydrogenase kinase, N-terminal" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_002420)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pyruvate__45__dehydrogenases_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Phosphorylated__45__pyruvate__45__dehydrogenases_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__7__46__11__46__24__45__RXN" name="mitogen-activated protein kinase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-23_000020) or (Ec-08_006680)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Protein__45__L__45__Ser__45__or__45__L__45__Thr__45__L__45__Pro_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Protein__45__L__45__Ser__45__or__45__L__45__Thr__45__P__45__L__45__Pro_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__7__46__11__46__4__45__RXN" name="Branched-chain alpha-ketoacid dehydrogenase kinase/Pyruvate dehydrogenase kinase, N-terminal" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_001550) or (Ec-16_002420) or (Ec-26_003360) or (Ec-16_002130)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Branched__45__chain__45__2__45__keto__45__acid__45__deHase_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Branched__45__chain__45__2__45__keto__45__acid__45__deH__45__P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__7__46__12__46__1__45__RXN" name="protein serine/threonine/tyrosine kinase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-07_001020)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Protein__45__L__45__serines_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Protein__45__Phosphoserines_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__7__46__12__46__2__45__RXN" name="Mitogen-activated protein kinase kinase (MAP2K)" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-08_005740)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Mitogen__45__Activated__45__Protein__45__Kinase__45__L__45__Thr_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MAP__45__Kinase__45__L__45__Phosphothreonine_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__7__46__13__46__3__45__RXN" name="Phytochrome-like protein 3" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-00_006180) or (Ec-06_005060) or (Ec-26_003580) or (Ec-06_005140) or (Ec-06_005110) or (Ec-22_000050) or (Ec-00_010160) or (Ec-27_001140) or (Ec-06_006760) or (Ec-28_000680) or (Ec-24_003660)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Protein__45__Histidines_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Protein__45__phospho__45__L__45__histidines_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__7__46__7__46__13__45__RXN" name="2.7.7.13-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5659 , PWY-882</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_MANNOSE__45__1P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GTP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GDP__45__MANNOSE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__7__46__7__46__14__45__RXN" name="Rossmann-like alpha/beta/alpha sandwich fold" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-07_004830)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY4FS-6 , PWY-7782</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PHOSPHORYL__45__ETHANOLAMINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CTP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CDP__45__ETHANOLAMINE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__7__46__7__46__15__45__RXN" name="Cytidyltransferase-like domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-15_001610)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY4FS-2 , PWY-3561 , PWY-7782 , PWY3O-450</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CTP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PHOSPHORYL__45__CHOLINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CDP__45__CHOLINE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__7__46__7__46__30__45__RXN" name="2.7.7.30-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__488_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GTP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_GUANOSINE_DIPHOSPHATE_FUCOSE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__7__46__7__46__60__45__RXN" name="2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_008050)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7560 , NONMEVIPP-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CTP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__C__45__METHYL__45__D__45__ERYTHRITOL__45__4__45__PHOSPHATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_4__45__CYTIDINE__45__5__45__DIPHOSPHO__45__2__45__C_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__7__46__7__46__8__45__RXN" name="polyribonucleotide nucleotidyltransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-28_001180) or (Ec-16_001470)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ssRNAs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Nucleoside__45__Diphosphates_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ssRNAs_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__7__46__8__46__11__45__RXN" name="CDP-diacylglycerol-inositol 3-phosphatidyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-23_001230) or (Ec-18_001300)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PHOSLIPSYN2-PWY , PWY-6352 , PWY-6351 , PWY-7625</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CDPDIACYLGLYCEROL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MYO__45__INOSITOL_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__1__45__phosphatidyl__45__inositols_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__7__46__8__46__15__45__RXN" name="Glycosyl transferase, family 4" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-07_007020)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_UDP__45__N__45__ACETYL__45__D__45__GLUCOSAMINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DOLICHOLP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__190_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_UMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__7__46__8__46__23__45__RXN" name="carboxyvinyl-carboxyphosphonate phosphorylmutase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_002250)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_1__45__CARBOXYVINYL__45__CARBOXYPHOSPHONATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__HYDROHYDROXYPHOSPHORYLPYRUVATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__7__46__9__46__3__45__RXN" name="AIR synthase-related protein, C-terminal domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_005250)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY0-901 , PWY-6281</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SE__45__2_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SEPO3_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2__46__8__46__1__46__6__45__RXN" name="biotin synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-24_000980)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY0-1507 , PWY-7380</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Sulfurated__45__Sulfur__45__Acceptors_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Reduced__45__2Fe__45__2S__45__Ferredoxins_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_DETHIOBIOTIN_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_S__45__ADENOSYLMETHIONINE_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_BIOTIN_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Oxidized__45__2Fe__45__2S__45__Ferredoxins_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_Unsulfurated__45__Sulfur__45__Acceptors_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CH33ADO_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_MET_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2KETO__45__3METHYLVALERATE__45__RXN" name="(S)-3-methyl-2-oxopentanoate dehydrogenase (acylating)" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5108 , ILEUDEG-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__KETO__45__3__45__METHYL__45__VALERATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__METHYL__45__BUTYRYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2KETO__45__4METHYL__45__PENTANOATE__45__DEHYDROG__45__RXN" name="4-methyl-2-oxopentanoate dehydrogenase (acylating)" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: LEU-DEG2-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2K__45__4CH3__45__PENTANOATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ISOVALERYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2OXOGLUTARATEDEH__45__RXN" name="2-oxoglutarate dehydrogenase complex" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_004160) or (Ec-25_000020) or (Ec-21_002300)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7254 , TCA , PWY-5690</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SUC__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2OXOGLUTDECARB__45__RXN" name="dihydrolipoamide dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_002310) or (Ec-25_000020) or (Ec-27_004160) or (Ec-21_002300)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5084 , PWY66-398</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Oxo__45__glutarate__45__dehydrogenase__45__lipoyl_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Oxo__45__glutarate__45__dehydro__45__suc__45__DH__45__lipoyl_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2PGADEHYDRAT__45__RXN" name="phosphopyruvate hydratase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-14_005400) or (Ec-26_004120) or (Ec-27_004000)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-2221 , PWY-6886 , P124-PWY , PWY-7218 , PWY-1042 , PWY-7003 , PWY-6142 , GLYCOLYSIS , PWY-6901 , PWY-7124 , PWY-5723 , ANAGLYCOLYSIS-PWY , NPGLUCAT-PWY , PWY-1622 , P122-PWY , GLUCONEO-PWY , P341-PWY , PWY-5484 , PWY66-399</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_2__45__PG_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PHOSPHO__45__ENOL__45__PYRUVATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_2TRANSKETO__45__RXN" name="2TRANSKETO-RXN" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-20_002600)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5723 , NONOXIPENT-PWY , PWY-1861 , P185-PWY , CALVIN-PWY , P21-PWY , PWY-6901</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_XYLULOSE__45__5__45__PHOSPHATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ERYTHROSE__45__4P_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_GAP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FRUCTOSE__45__6P_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__45__CH3__45__2__45__OXOBUTANOATE__45__OH__45__CH3__45__XFER__45__RXN" name="3-methyl-2-oxobutanoate hydroxymethyltransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_001700)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PANTO-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_2__45__KETO__45__ISOVALERATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_METHYLENE__45__THF__45__GLU__45__N_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_THF__45__GLU__45__N_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__DEHYDROPANTOATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__45__DEHYDROQUINATE__45__DEHYDRATASE__45__RXN" name="3-dehydroquinate dehydratase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_006010) or (Ec-14_005400) or (Ec-26_004120) or (Ec-07_000550)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6707 , QUINATEDEG-PWY , PWY-6416 , PWY-6163</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_DEHYDROQUINATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_3__45__DEHYDRO__45__SHIKIMATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__45__DEHYDROQUINATE__45__SYNTHASE__45__RXN" name="3-dehydroquinate synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_009700) or (Ec-24_000340) or (Ec-00_002010)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6164</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_3__45__DEOXY__45__D__45__ARABINO__45__HEPTULOSONATE__45__7__45__P_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_DEHYDROQUINATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__45__HYDROXYBUTYRYL__45__COA__45__DEHYDROGENASE__45__RXN" name="3-HYDROXYBUTYRYL-COA-DEHYDROGENASE-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_005290)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACETOACETYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_S__45__3__45__HYDROXYBUTANOYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__45__HYDROXYISOBUTYRATE__45__DEHYDROGENASE__45__RXN" name="NADP-dependent 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-11_000140) or (Ec-14_006530)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: VALDEG-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__12175_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CH3__45__MALONATE__45__S__45__ALD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__45__HYDROXYISOBUTYRYL__45__COA__45__HYDROLASE__45__RXN" name="3-HYDROXYISOBUTYRYL-COA-HYDROLASE-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: VALDEG-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__12173_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__12175_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__45__ISOPROPYLMALDEHYDROG__45__RXN" name="3-isopropylmalate dehydrogenase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_002120)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6871 , LEUSYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_2__45__D__45__THREO__45__HYDROXY__45__3__45__CARBOXY__45__ISOCAPROATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__7100_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__45__ISOPROPYLMALISOM__45__RXN" name="3-isopropylmalate dehydratase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_000170) or (Ec-sdr_f_000030) or (Ec-13_001950)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6871 , LEUSYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_3__45__CARBOXY__45__3__45__HYDROXY__45__ISOCAPROATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__9451_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__45__OXOACYL__45__ACP__45__REDUCT__45__RXN" name="NAD(P)-binding domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_007100)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: FASYN-ELONG-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_B__45__KETOACYL__45__ACP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_OH__45__ACYL__45__ACP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__45__OXOACYL__45__ACP__45__SYNTH__45__BASE__45__RXN" name="Beta-ketoacyl synthase, N-terminal" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_000650) or (Ec-27_002090) or (Ec-12_000640) or (Ec-27_003480)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5966 , PWY-5965 , FASYN-INITIAL-PWY , PWY-7388</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACETYL__45__ACP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MALONYL__45__ACP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Acetoacetyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__45__OXOACYL__45__ACP__45__SYNTH__45__RXN" name="3-oxoacyl-[acyl-carrier-protein] synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_000640) or (Ec-12_000650) or (Ec-27_003480) or (Ec-27_002090)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: FASYN-ELONG-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_MALONYL__45__ACP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Saturated__45__Fatty__45__Acyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_B__45__KETOACYL__45__ACP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__45__PHOSPHOGLYCERATE__45__PHOSPHATASE__45__RXN" name="3-PHOSPHOGLYCERATE-PHOSPHATASE-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_G3P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLYCERATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__45__SULFINOALANINE__45__AMINOTRANSFERASE__45__RXN" name="3-SULFINOALANINE-AMINOTRANSFERASE-RXN" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_003270)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: CYSTEINE-DEG-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_3__45__SULFINOALANINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_3__45__SULFINYL__45__PYRUVATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLT_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__1__46__1__46__23__45__RXN" name="3.1.1.23-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: LIPAS-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__504_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLYCEROL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Fatty__45__Acids_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__1__46__1__46__47__45__RXN" name="1-alkyl-2-acetylglycerophosphocholine esterase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_002000)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Alkyl__45__acetyl__45__glycero__45__phosphocholines_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_1__45__Alkyl__45__sn__45__glycero__45__3__45__phosphocholines_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACET_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__1__46__1__46__64__45__RXN" name="all-trans-retinyl-palmitate hydrolase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_004830) or (Ec-16_002070) or (Ec-19_001900) or (Ec-12_006850) or (Ec-25_000250)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CHOCOLA_A_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__13524_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PALMITATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__1__46__26__46__3__45__RXN" name="ribonuclease III" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-22_003870) or (Ec-02_005870)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_RNASE__45__III__45__MRNA__45__PROCESSING__45__SUBSTRATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_mRNA__45__Fragments_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_RNASE__45__III__45__PROCESSING__45__PRODUCT__45__MRNA_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__1__46__26__46__4__45__RXN" name="RNA-DNA hybrid ribonuclease" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-25_002560) or (Ec-17_003740) or (Ec-22_003570)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_RNA__45__DNA__45__hybrids_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_DNA__45__Holder_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Nucleoside__45__Monophosphates_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__1__46__26__46__5__45__RXN" name="Ribonuclease P, Rpp40" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-04_004570) or (Ec-01_005810) or (Ec-22_001370) or (Ec-03_005340)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY0-1479</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD0__45__2352_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD0__45__2353_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_tRNA__45__fragment_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__1__46__27__46__1__45__RXN" name="ribonuclease T2" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_004910)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_RNA__45__Holder_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_3__45__Prime__45__Ribonucleoside__45__Monophosphates_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__phosphooligonucleotides_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__1__46__27__46__5__45__RXN" name="ribonuclease A" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_008560)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_RNA__45__Holder_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_3__45__Prime__45__Ribonucleoside__45__Monophosphates_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__phosphooligonucleotides_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__1__46__27__46__9__45__RXN" name="tRNA-splicing endonuclease subunit Sen15" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_006500)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6689</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD0__45__2350_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_tRNA__45__Introns_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pre__45__tRNA__45__3__45__prime__45__half__45__molecules_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pre__45__tRNA__45__5__45__prime__45__half__45__molecules_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__1__46__3__46__16__45__RXN" name="Protein phosphatase 2C" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_005940) or (Ec-08_001920) or (Ec-18_000810) or (Ec-12_005950) or (Ec-23_000740) or (Ec-13_002060) or (Ec-01_012040) or (Ec-21_001700) or (Ec-21_003270) or (Ec-08_002600) or (Ec-17_003930) or (Ec-10_002940) or (Ec-11_005420) or (Ec-17_003300) or (Ec-11_005950) or (Ec-01_010740)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Protein__45__Ser__45__or__45__Thr__45__phosphate_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Protein__45__L__45__serine__45__or__45__L__45__threonine_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__1__46__3__46__46__45__RXN" name="3.1.3.46-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-14_004360)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY66-423</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__535_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FRUCTOSE__45__6P_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__1__46__3__46__56__45__RXN" name="3.1.3.56-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6363</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_INOSITOL__45__1__45__4__45__5__45__TRISPHOSPHATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_INOSITOL__45__1__45__4__45__BISPHOSPHATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__1__46__3__46__57__45__RXN" name="3.1.3.57-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-14_006130)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6363</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_INOSITOL__45__1__45__4__45__BISPHOSPHATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_D__45__MYO__45__INOSITOL__45__4__45__PHOSPHATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__1__46__3__46__67__45__RXN" name="3.1.3.67-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_001920) or (Ec-21_001950)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-6368</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PHOSPHATIDYLINOSITOL__45__345__45__TRIPHOSPHATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PHOSPHATIDYL__45__MYO__45__INOSITOL__45__45__45__BISPHOSPHA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__1__46__4__46__11__45__RXN" name="phosphatidylinositol phospholipase C" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_005750)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: LIPASYN-PWY , PWY-6367 , PWY-6351 , PWY-7039</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PHOSPHATIDYL__45__MYO__45__INOSITOL__45__45__45__BISPHOSPHA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_INOSITOL__45__1__45__4__45__5__45__TRISPHOSPHATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DIACYLGLYCEROL_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__1__46__4__46__14__45__RXN" name="3.1.4.14-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
            <p>SUBSYSTEM: PWY-6012</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ACP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_apo__45__ACP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PANTETHEINE__45__P_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__1__46__4__46__17__45__RXN" name="RNA ligase/cyclic nucleotide phosphodiesterase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-20_000300) or (Ec-20_002540) or (Ec-14_005050) or (Ec-01_000990)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Cyclic__45__3__45__5__45__Nucleoside__45__Monophosphates_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Nucleoside__45__Monophosphates_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__2__46__1__46__106__45__RXN" name="Mannosyl-oligosaccharide glucosidase, family GH63" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-00_001370)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__13936_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Glucopyranose_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__13937_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__2__46__1__46__113__45__RXN" name="Mannosyl-oligosaccharide 1,2-alpha-mannosidase, central fragment, family GH47" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_004210) or (Ec-28_001490) or (Ec-06_004220) or (Ec-06_004230) or (Ec-12_004080) or (Ec-08_004500) or (Ec-00_002210) or (Ec-08_004510) or (Ec-16_004450) or (Ec-10_001700) or (Ec-17_002250)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Mannosyl9__45__Nacetylglucosaminyl2_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_MANNOSE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Mannosyl8__45__Nacetylglucosaminyl2_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__2__46__1__46__114__45__RXN" name="3.2.1.114-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7426</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Mannosyl5__45__N__45__acetyl__45__glucosamine2__45__R_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__13559_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_2__45__N__45__linked__45__Glycan_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__2__46__1__46__14__45__RXN" name="chitinase-domain containing protein" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-05_006850)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6902</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CHITIN_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Chitodextrins_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__2__46__1__46__21__45__RXN" name="Beta-glucosidase, family GH1" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-20_004800) or (Ec-07_005240) or (Ec-07_001850) or (Ec-26_002410) or (Ec-04_002190)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Beta__45__D__45__glucosides_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Glucopyranose_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Non__45__Glucosylated__45__Glucose__45__Acceptors_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__2__46__1__46__23__45__RXN" name="Glycoside hydrolase-type carbohydrate-binding, subgroup" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_007000) or (Ec-06_001410)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Beta__45__D__45__Galactosides_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Non__45__Galactosylated__45__Galactose__45__Acceptors_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_D__45__galactopyranose_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__2__46__1__46__24__45__RXN" name="Alpha-mannosidase, family GH38" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_010280)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Alpha__45__D__45__Mannosides_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__13559_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Non__45__Glycosylated__45__sugar__45__Acceptors_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__2__46__1__46__25__45__RXN" name="beta-mannosidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-13_001660)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Beta__45__D__45__Mannosides_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Non__45__Glycosylated__45__sugar__45__Acceptors_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__12601_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__2__46__1__46__39__45__RXN" name="Concanavalin A-like lectin/glucanase domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-23_003530) or (Ec-26_006300) or (Ec-08_004960) or (Ec-11_000670) or (Ec-27_001180) or (Ec-27_000710) or (Ec-27_001170) or (Ec-13_003840) or (Ec-14_004220)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_1__45__3__45__beta__45__D__45__Glucans_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Glucopyranose_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_1__45__3__45__beta__45__D__45__Glucans_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__2__46__1__46__58__45__RXN" name="Glycoside hydrolase, catalytic domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-00_002090) or (Ec-19_000430)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_1__45__3__45__beta__45__D__45__Glucans_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_1__45__3__45__beta__45__D__45__Glucans_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ALPHA__45__GLUCOSE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__2__46__1__46__6__45__RXN" name="obsolete endo-1,3(4)-beta-glucanase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_000710) or (Ec-13_003840) or (Ec-14_004220) or (Ec-08_004960)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Beta__45__D__45__glucan__45__w__45__C__45__3__45__substitution_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Beta__45__D__45__Glucans_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__2__46__1__46__8__45__RXN" name="Endo-1,4-beta-xylanase, family GH10" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-07_005310)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6784</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_1__45__4__45__beta__45__Xylan_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_1__45__4__45__D__45__xylooligosaccharides_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__2__46__1__46__84__45__RXN" name="Alpha-glucosidase II alpha subunit, family GH31" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-14_000790) or (Ec-04_003730)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_1__45__3__45__alpha__45__D__45__Glucans_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_1__45__3__45__alpha__45__D__45__Glucans_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Glucopyranose_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__2__46__1__46__96__45__RXN" name="Glycoside hydrolase, family 85" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_005260)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_a__45__glycopeptide__45__D__45__mannosyl__45__Nsup4sup__45__N__45__ace_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__14375_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_N__45__acetyl__45__D__45__glucosamine__45__asparagine_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__4__46__11__46__1__45__RXN" name="Peptidase M17, leucyl aminopeptidase, C-terminal" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_006310) or (Ec-03_001620)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Protein__45__With__45__N__45__Terminal__45__X__45__Pro_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Protein__45__With__45__N__45__Terminal__45__Pro_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Amino__45__Acids__45__20_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__4__46__11__46__18__45__RXN" name="obsolete methionyl aminopeptidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-20_001930) or (Ec-07_001830) or (Ec-27_005350) or (Ec-27_005340) or (Ec-04_004530) or (Ec-04_004560)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Protein__45__With__45__N__45__Terminal__45__Met_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_MET_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Peptides__45__holder_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__4__46__11__46__2__45__RXN" name="Peptidase M1, alanyl aminopeptidase, C-terminal" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-09_003180)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_POLYPEPTIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_POLYPEPTIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__Amino__45__Acids_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__4__46__11__46__4__45__RXN" name="Leucine aminopeptidase/peptidase B" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_001620)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_TRIPEPTIDES_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Amino__45__Acids__45__20_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DIPEPTIDES_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__4__46__14__46__5__45__RXN" name="putative dipeptidyl peptidase IV" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_008560)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_POLYPEPTIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_DIPEPTIDES_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Peptides__45__holder_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__4__46__19__46__12__45__RXN" name="EF-hand domain pair" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-13_001980) or (Ec-00_001410)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTEIN__45__N__45__UBIQUITYL__45__LYSINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Protein__45__L__45__lysine_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Ubiquitin__45__C__45__Terminal__45__Glycine_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__4__46__21__46__102__45__RXN" name="Tail specific protease" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_000680) or (Ec-11_003480) or (Ec-27_002020)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_General__45__Protein__45__Substrates_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Peptides__45__holder_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__4__46__21__46__26__45__RXN" name="obsolete prolyl oligopeptidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-14_001130)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_General__45__Protein__45__Substrates_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Peptides__45__holder_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__4__46__21__46__4__45__RXN" name="Trypsin domain protein" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-09_000200)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_General__45__Protein__45__Substrates_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Peptides__45__holder_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__4__46__21__46__53__45__RXN" name="putative ATP-dependent proteinase, possible LON protease" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-25_003740)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_General__45__Protein__45__Substrates_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Peptides__45__holder_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__4__46__21__46__89__45__RXN" name="Presenilin/signal peptide peptidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-20_002160)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Peptides__45__with__45__Leader__45__Sequence_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Leader__45__Sequences_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Peptides__45__holder_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__4__46__21__46__92__45__RXN" name="ClpP/crotonase-like domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_004640) or (Ec-26_005690) or (Ec-19_000460) or (Ec-10_003920) or (Ec-01_010610) or (Ec-07_005420) or (Ec-13_001830)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_General__45__Protein__45__Substrates_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Peptides__45__holder_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__4__46__22__46__1__45__RXN" name="cathepsin B-like proteinase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-17_004090)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_General__45__Protein__45__Substrates_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Peptides__45__holder_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__4__46__22__46__15__45__RXN" name="Cathepsin L-like proteinase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-14_001100) or (Ec-27_000190)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_General__45__Protein__45__Substrates_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Peptides__45__holder_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__4__46__22__46__16__45__RXN" name="Cathepsin H" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_006960)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_General__45__Protein__45__Substrates_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Peptides__45__holder_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__4__46__22__46__40__45__RXN" name="similar to bleomycin hydrolase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-18_002260)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Bleomycins_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Deamido__45__bleomycins_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__4__46__22__46__68__45__RXN" name="Protease, Ulp1 family" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-23_000900)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SUMO__45__propeptides_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_SUMO__45__peptides_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__4__46__23__46__1__45__RXN" name="obsolete pepsin A" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_005280)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_General__45__Protein__45__Substrates_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Peptides__45__holder_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__4__46__23__46__34__45__RXN" name="cathepsine B" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_006050)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_General__45__Protein__45__Substrates_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Peptides__45__holder_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__4__46__24__46__57__45__RXN" name="obsolete O-sialoglycoprotein endopeptidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-17_002090)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_O__45__Sialoglycoproteins_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Peptides__45__holder_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__4__46__24__46__59__45__RXN" name="Mitochondrial intermediate peptidase (N-terminal)" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-28_002150)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_mitochondrial__45__intermediate__45__protein_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Octapeptides_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_mature__45__protein_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__4__46__24__46__64__45__RXN" name="Mitochondrial Processing Peptidase alpha subunit" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-07_006910) or (Ec-03_002330)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Mitochondrial__45__Preproteins_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Processed__45__Mitochondrial__45__Proteins_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Peptides__45__holder_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__4__46__24__46__70__45__RXN" name="oligopeptidase A" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-20_002090)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OLIGOPEPTIDES_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Peptides__45__holder_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__4__46__25__46__1__45__RXN" name="Proteasome component (PCI) domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-14_000320) or (Ec-05_000270) or (Ec-26_006330) or (Ec-26_002800) or (Ec-26_004490) or (Ec-01_005740) or (Ec-06_001170) or (Ec-08_002770) or (Ec-13_002300) or (Ec-10_001570) or (Ec-22_002360) or (Ec-04_004400) or (Ec-08_004350)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_General__45__Protein__45__Substrates_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Peptides__45__holder_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__5__46__1__46__27__45__RXN" name="peptide deformylase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-24_001980) or (Ec-24_001990)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Charged__45__fMET__45__tRNAs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_FORMATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__Methionylaminoacyl__45__tRNAs_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__5__46__1__46__88__45__RXN" name="peptide deformylase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-24_001980) or (Ec-24_001990)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_FORMYL__45__L__45__METHIONYL__45__PEPTIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_METHIONYL__45__PEPTIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FORMATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__5__46__1__46__98__45__RXN" name="Histone deacetylase domain" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_001000) or (Ec-10_001980) or (Ec-05_003910) or (Ec-05_003890) or (Ec-05_006370) or (Ec-28_001400) or (Ec-06_004320)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Histone__45__Acetyl__45__Lysine_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Histone__45__L__45__lysine_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACET_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__5__46__2__46__17__45__RXN" name="3.5.2.17-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5691 , PWY-7394</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_5__45__HYDROXYISOURATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__5821_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__6__46__3__46__1__45__RXN" name="phospholipid-translocating ATPase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-25_003160) or (Ec-10_001840)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Phospholipids_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Phospholipids_e" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__6__46__3__46__6__45__RXN" name="Vacuolar (H+)-ATPase G subunit" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_010400) or (Ec-07_006840)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_e" stoichiometry="2" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3__46__6__46__4__46__4__45__RXN" name="Kinesin light chain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_006100) or (Ec-09_002610) or (Ec-06_011040) or (Ec-00_010470) or (Ec-00_002720) or (Ec-20_000990) or (Ec-13_003550) or (Ec-17_000590)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Kinesin__45__Microtubules__45__Complex_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Kinesin__45__Microtubules__45__Complex_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_3PGAREARR__45__RXN" name="phosphoglycerate mutase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_002160) or (Ec-27_000330) or (Ec-03_002170) or (Ec-06_009930) or (Ec-01_000980) or (Ec-24_002670) or (Ec-10_005410)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: P124-PWY , PWY-2221 , PWY-7218 , PWY-7124 , GLUCONEO-PWY , PWY-5723 , PWY-7003 , P341-PWY , PWY-6886 , PWY-1042 , PWY-5484 , PWY-6142 , GLYCOLYSIS , PWY-6901</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_2__45__PG_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_G3P_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_4__45__COUMARATE__45____45__COA__45__LIGASE__45__RXN" name="4-COUMARATE--COA-LIGASE-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_001480) or (Ec-04_001280)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-361 , PWY-6435 , PWY-6320 , PWY-7398 , PWY-7397 , PWY-5754 , PWY1F-FLAVSYN , PWY-6920 , PWY-7046 , PWY-6982 , PWY-5135</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_COUMARATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_P__45__COUMAROYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_4__45__HYDROXY__45__2__45__KETOPIMELATE__45__LYSIS__45__RXN" name="4-HYDROXY-2-KETOPIMELATE-LYSIS-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-11_002460)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: 3-HYDROXYPHENYLACETATE-DEGRADATION-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__804_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_SUCC__45__S__45__ALD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PYRUVATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_4__45__HYDROXYPHENYLPYRUVATE__45__DIOXYGENASE__45__RXN" name="Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-23_003630)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-1581 , PWY-1422 , PWY-7432 , TYRFUMCAT-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_P__45__HYDROXY__45__PHENYLPYRUVATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HOMOGENTISATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_4__45__NITROPHENYLPHOSPHATASE__45__RXN" name="phosphatase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-04_005490) or (Ec-24_002770) or (Ec-11_002020) or (Ec-26_006130) or (Ec-07_006400) or (Ec-05_002630) or (Ec-08_002600) or (Ec-18_001570) or (Ec-12_008080) or (Ec-00_007000) or (Ec-15_002020) or (Ec-08_005840)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__194_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_P__45__NITROPHENOL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_4__46__1__46__99__46__4__45__RXN" name="Tryptophan synthase beta subunit-like PLP-dependent enzyme" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-20_002800)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__68_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__OXOBUTANOATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_4__46__2__46__1__46__58__45__RXN" name="(3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydratase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7388 , PWY-5971 , PWY-5994</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Beta__45__3__45__hydroxybutyryl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Crotonyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_4__46__2__46__1__46__61__45__RXN" name="4.2.1.61-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
            <p>SUBSYSTEM: PWY-5971 , PWY-5994</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_R__45__3__45__Hydroxypalmitoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__Hexadecenoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_4__46__2__46__2__46__10__45__RXN" name="Pectin lyase fold" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_001490) or (Ec-08_000860) or (Ec-08_000930) or (Ec-25_001080) or (Ec-21_003140) or (Ec-13_002640) or (Ec-21_001360) or (Ec-20_003120) or (Ec-08_000940) or (Ec-20_003100) or (Ec-09_004260) or (Ec-13_002310) or (Ec-02_001170) or (Ec-14_000350) or (Ec-00_010800) or (Ec-14_004740) or (Ec-12_000410) or (Ec-14_000190) or (Ec-00_011490) or (Ec-02_001160) or (Ec-13_002330) or (Ec-00_009490) or (Ec-13_002650) or (Ec-09_004230) or (Ec-18_004360) or (Ec-08_000920) or (Ec-04_001770) or (Ec-00_006370) or (Ec-23_004040)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Pectin_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__12980_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_4__46__2__46__3__46__12__45__RXN" name="6-pyruvoyl tetrahydropterin synthase/QueD family protein" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_003470) or (Ec-10_002190)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6983 , PWY-7442 , PWY-5663 , PWY-5664</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_DIHYDRONEOPTERIN__45__P3_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_P3I_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_6__45__PYRUVOYL__45__5678__45__TETRAHYDROPTERIN_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_4__46__2__46__99__46__18__45__RXN" name="DNA-(apurinic or apyrimidinic site) lyase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_006350)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_DNA__45__containing__45__abasic__45__Sites_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_3__45__terminal__45__unsaturated__45__sugars_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_5__45__Phosphopolynucleotides_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_4__46__4__46__1__46__14__45__RXN" name="1-aminocyclopropane-1-carboxylate synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-04_003460)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: ETHYL-PWY , PWY-7270</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_S__45__ADENOSYLMETHIONINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_5__45__METHYLTHIOADENOSINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__68_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_4__46__99__46__1__46__3__45__RXN" name="sirohydrochlorin cobaltochelatase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_002430)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7377</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_SIROHYDROCHLORIN_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__43__2_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_COBALT__45__SIROHYDROCHLORIN_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_4OH2OXOGLUTARALDOL__45__RXN" name="KDPG/KHG aldolase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_004070)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: HYDROXYPRODEG-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__15015_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_GLYOX_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PYRUVATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_4OHBENZOATE__45__OCTAPRENYLTRANSFER__45__RXN" name="UbiA prenyltransferase family" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-25_002110) or (Ec-00_007350) or (Ec-00_007360) or (Ec-24_003910)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6708 , PWY-5870</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OCTAPRENYL__45__DIPHOSPHATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_4__45__hydroxybenzoate_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_3__45__OCTAPRENYL__45__4__45__HYDROXYBENZOATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_5__45__FORMYL__45__THF__45__CYCLO__45__LIGASE__45__RXN" name="5-formyltetrahydrofolate cyclo-ligase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_009140)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-2201 , PWY-3841 , 1CMET2-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_N5__45__Formyl__45__THF__45__Glu__45__N_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_5__45__10__45__METHENYL__45__THF__45__GLU__45__N_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_5__45__NUCLEOTID__45__RXN" name="5&apos;-nucleotidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-05_000950) or (Ec-12_005060) or (Ec-15_000820)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Ribonucleoside__45__Monophosphates_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Ribonucleosides_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_5__45__OXOPROLINASE__45__ATP__45__HYDROLYSING__45__RXN" name="5-oxoprolinase (ATP-hydrolysing)" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_005550)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-4041</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_5__45__OXOPROLINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_GLT_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_5__46__1__46__1__46__16__45__RXN" name="Tryptophan synthase beta subunit-like PLP-dependent enzyme" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-24_004010)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Protein__45__L__45__serines_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Protein__45__D__45__serines_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_5__46__3__46__3__46__14__45__RXN" name="5.3.3.14-RXN" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
            <p>SUBSYSTEM: PWY0-862</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Trans__45__D2__45__decenoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Cis__45__delta__45__3__45__decenoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_5__46__3__46__4__46__1__45__RXN" name="Protein disulfide isomerase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-11_003940) or (Ec-19_003170) or (Ec-19_003370)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Proteins__45__with__45__incorrect__45__disulfides_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Proteins__45__with__45__correct__45__disulfides_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_5__46__99__46__1__46__2__45__RXN" name="DNA topoisomerase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_011310) or (Ec-24_003570) or (Ec-01_011320) or (Ec-12_007130) or (Ec-03_004560) or (Ec-12_007190) or (Ec-15_001600) or (Ec-03_001530) or (Ec-08_003340)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Negatively__45__super__45__coiled__45__DNAs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Relaxed__45__DNAs_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_5__46__99__46__1__46__3__45__RXN" name="DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_001490) or (Ec-24_003570) or (Ec-08_001460) or (Ec-03_004560) or (Ec-15_001600) or (Ec-23_001820)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Double__45__Stranded__45__DNAs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Negatively__45__super__45__coiled__45__DNAs_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_6__45__PHOSPHOFRUCTO__45__2__45__KINASE__45__RXN" name="6-phosphofructo-2-kinase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-11_002480) or (Ec-07_005220) or (Ec-14_004360) or (Ec-14_005870)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY66-423</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_FRUCTOSE__45__6P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__535_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_6__46__1__46__1__46__24__45__RXN" name="Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-15_002360) or (Ec-06_008480)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLX__45__tRNAs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLT_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_GLUTAMYL__45__GLX__45__TRNAS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_6__46__2__46__1__46__34__45__RXN" name="6.2.1.34-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_001480) or (Ec-04_001280)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-6343 , PWY-1121</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FERULIC__45__ACID_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FERULOYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_6__46__3__46__2__46__25__45__RXN" name="tubulin-tyrosine ligase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-05_000280) or (Ec-07_003840) or (Ec-03_004300) or (Ec-18_002200) or (Ec-18_003990) or (Ec-06_008800) or (Ec-19_003290) or (Ec-26_006110) or (Ec-00_005910) or (Ec-20_004590) or (Ec-19_000160) or (Ec-02_000600) or (Ec-14_002580) or (Ec-19_002060) or (Ec-02_006230) or (Ec-01_004520) or (Ec-02_000590) or (Ec-01_007560) or (Ec-02_002820)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_TYR_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Detyrosinated__45__alpha__45____45__tubulins_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Alpha__45__tubulins_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_6__46__3__46__4__46__10__45__RXN" name="Biotin/lipoate A/B protein ligase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-05_005190) or (Ec-00_003530) or (Ec-01_008620) or (Ec-11_004970)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_BIOTIN_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Apo__45__Propionyl__45__CoA__45__CO2__45__ligases_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Propionyl__45__CoA__45__CO2__45__ligases_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_6__46__3__46__4__46__11__45__RXN" name="Biotin/lipoate A/B protein ligase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-05_005190) or (Ec-00_003530) or (Ec-11_004970) or (Ec-01_008620)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Apo__45__3__45__methylcrotonoyl__45__CoA__45__carbon__45__dioxide_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_BIOTIN_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__methylcrotonoyl__45__CoA__45__carbon__45__dioxide_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_6__46__3__46__4__46__9__45__RXN" name="Biotin/lipoate A/B protein ligase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-05_005190) or (Ec-00_003530) or (Ec-01_008620) or (Ec-11_004970)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_apo__45__Transcarboxylases_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_BIOTIN_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_holo__45__Transcarboxylases_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_6__46__3__46__5__46__6__45__RXN" name="Asparaginyl-tRNA Synthetase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_001810) or (Ec-17_000510)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY490-4</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GLN_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__aspartyl__45__tRNAAsn_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Charged__45__ASN__45__tRNAs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLT_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_6__46__3__46__5__46__7__45__RXN" name="6.3.5.7-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5921</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GLN_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__glutamyl__45__tRNAGln_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLT_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Charged__45__GLN__45__tRNAs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_6PFRUCTPHOS__45__RXN" name="6-phosphofructokinase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_002540) or (Ec-22_000070) or (Ec-14_003880)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7385 , PWY-1861 , ANAGLYCOLYSIS-PWY , PWY-1042 , PWY-5484 , GLYCOLYSIS</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_FRUCTOSE__45__6P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_FRUCTOSE__45__16__45__DIPHOSPHATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_6PGLUCONDEHYDROG__45__RXN" name="phosphogluconate dehydrogenase [NAD(P)+-dependent, decarboxylating]" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_008450) or (Ec-12_007690)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: P122-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD__45__P__45__OR__45__NOP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__2961_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADH__45__P__45__OR__45__NOP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_RIBULOSE__45__5P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_6PGLUCONOLACT__45__RXN" name="6-Phosphogluconolactonase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_004960)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: RUMP-PWY , OXIDATIVEPENT-PWY , P122-PWY , GLYCOLYSIS-E-D</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_D__45__6__45__P__45__GLUCONO__45__DELTA__45__LACTONE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__2961_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_7KAPSYN__45__RXN" name="putative 8-amino-7-oxononanoate synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-04_002200)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6578</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__558_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__ALPHA__45__ALANINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_8__45__AMINO__45__7__45__OXONONANOATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ACETATE__45____45__COA__45__LIGASE__45__RXN" name="Acetate-CoA ligase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_006210)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7118 , PWY-6672 , PWY66-161 , PWY66-162 , PWY0-1313 , PWY66-21</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACET_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACETYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ACETOACETATE__45____45__COA__45__LIGASE__45__RXN" name="AMP-dependent synthetase/ligase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-14_003120)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__KETOBUTYRATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ACETOACETYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ACETOLACTREDUCTOISOM__45__RXN" name="Acetohydroxy acid isomeroreductase C-terminal" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-09_003170)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: VALSYN-PWY , PWY-7111</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__13357_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_2__45__ACETO__45__LACTATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ACETOLACTSYN__45__RXN" name="ACETOLACTSYN-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5938 , PWY-6389 , VALSYN-PWY , PWY-7111 , PWY-5939</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PYRUVATE_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_2__45__ACETO__45__LACTATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ACETOOHBUTREDUCTOISOM__45__RXN" name="Acetohydroxy acid isomeroreductase C-terminal" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-09_003170)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: ILEUSYN-PWY , PWY-5103</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__ACETO__45__2__45__HYDROXY__45__BUTYRATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_1__45__KETO__45__2__45__METHYLVALERATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ACETOOHBUTSYN__45__RXN" name="2-aceto-2-hydroxy-butyrate synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5101 , PWY-5104 , PWY-5103 , ILEUSYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_2__45__OXOBUTANOATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PYRUVATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_2__45__ACETO__45__2__45__HYDROXY__45__BUTYRATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ACETYL__45__COA__45__ACETYLTRANSFER__45__RXN" name="Thiolase, C-terminal" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-22_002850) or (Ec-26_003940) or (Ec-24_000870)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7391 , PWY-922 , PWY66-367 , PWY-7524 , PWY-6588 , PWY-6583 , PWY-7779 , PWY-7778 , PWY-6863 , PWY-5789 , PWY-7401 , PWY-5676 , ACETOACETATE-DEG-PWY , PWY-6883 , PWY66-368 , CENTFERM-PWY , PWY-6174 , P163-PWY , PWY-5741 , PWY1-3 , P162-PWY , PWY-5177 , PWY-6876 , PWY-7216</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ACETYL__45__COA_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACETOACETYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ACETYL__45__COA__45__CARBOXYLTRANSFER__45__RXN" name="Acetyl-CoA carboxylase, partial" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_003230) or (Ec-20_002520) or (Ec-01_009720) or (Ec-03_001890) or (Ec-01_010970) or (Ec-14_002460) or (Ec-19_003040)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6679 , PWY-7388 , PWY-5744 , PWY-5743 , PWY-5789 , PWY-6722 , PWY-4381</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HCO3_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACETYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MALONYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ACETYLGLUTKIN__45__RXN" name="Aspartate/glutamate/uridylate kinase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-24_000610)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5154 , ARGSYNBSUB-PWY , GLUTORN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACETYL__45__GLU_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_N__45__ACETYL__45__GLUTAMYL__45__P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ACETYLORNDEACET__45__RXN" name="ACETYLORNDEACET-RXN" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_000150) or (Ec-14_002670)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: GLUTORN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_N__45__ALPHA__45__ACETYLORNITHINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_L__45__ORNITHINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACET_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ACETYLORNTRANSAM__45__RXN" name="Aminotransferase class-III" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-14_006580)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5154 , ARGSYNBSUB-PWY , GLUTORN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_N__45__ALPHA__45__ACETYLORNITHINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_GLT_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__469_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ACID__45__PHOSPHATASE__45__RXN" name="acid phosphatase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-05_000260) or (Ec-27_003870) or (Ec-05_004740) or (Ec-24_000520) or (Ec-21_005990) or (Ec-20_003560) or (Ec-07_000930) or (Ec-20_002470) or (Ec-19_002110) or (Ec-26_006410) or (Ec-00_000940) or (Ec-21_003560) or (Ec-19_000870)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6348</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Orthophosphoric__45__Monoesters_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Alcohols_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ACONITATEDEHYDR__45__RXN" name="Aconitate hydratase," reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_000170) or (Ec-16_001000)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5750 , PWY-6549 , GLYOXYLATE-BYPASS , PWY66-398 , PWY-7124 , FERMENTATION-PWY , PWY-6728 , PWY-5913 , P23-PWY , P105-PWY , PWY-7254 , TCA , PWY-5392 , PWY-6969 , REDCITCYC , PWY-5690</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CIT_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CIS__45__ACONITATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ACONITATEHYDR__45__RXN" name="cis-aconitate hydratase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_000170) or (Ec-16_001000)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: GLYOXYLATE-BYPASS , PWY-6549 , PWY66-398 , PWY-7124 , PWY-6728 , FERMENTATION-PWY , PWY-5913 , P105-PWY , P23-PWY , PWY-7254 , TCA , PWY-5392 , PWY-6969 , REDCITCYC , PWY-5690</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CIS__45__ACONITATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_THREO__45__DS__45__ISO__45__CITRATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ACP__45__S__45__ACETYLTRANSFER__45__RXN" name="ACP-S-ACETYLTRANSFER-RXN" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_000650) or (Ec-27_002090)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-5966 , FASYN-INITIAL-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ACP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACETYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACETYL__45__ACP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ACSERLY__45__RXN" name="Tryptophan synthase beta subunit-like PLP-dependent enzyme" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-00_008830) or (Ec-01_011260) or (Ec-01_012080)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: CYSTSYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_HS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACETYLSERINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CYS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACET_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ACYL__45__COA__45__OXIDASE__45__RXN" name="acyl-CoA oxidase, partial" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_004320) or (Ec-22_002920) or (Ec-08_006390)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7007</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_HYDROGEN__45__PEROXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_TRANS__45__D2__45__ENOYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ACYLCOADEHYDROG__45__RXN" name="acyl-CoA dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-08_006390) or (Ec-16_004260) or (Ec-14_001600) or (Ec-03_003490) or (Ec-06_008910) or (Ec-21_001100)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: FAO-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Saturated__45__Fatty__45__Acyl__45__CoA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ETF__45__Oxidized_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ETF__45__Reduced_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_TRANS__45__D2__45__ENOYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ACYLCOASYN__45__RXN" name="2,3,4-saturated fatty acyl-CoA synthetase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_008720) or (Ec-02_006430) or (Ec-01_001560) or (Ec-03_003710)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7288 , PWY66-391 , FAO-PWY , PWY-5136</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD66__45__39_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Saturated__45__Fatty__45__Acyl__45__CoA_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ADCLY__45__RXN" name="ADCLY-RXN" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_007170)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-6543</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_4__45__AMINO__45__4__45__DEOXYCHORISMATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_P__45__AMINO__45__BENZOATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PYRUVATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ADDALT__45__RXN" name="Adenosine/AMP deaminase domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-00_010560) or (Ec-04_003130)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7179 , PWY-7179-1</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DEOXYADENOSINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_DEOXYINOSINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ADENODEAMIN__45__RXN" name="Adenosine/AMP deaminase domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-00_010560) or (Ec-04_003130)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY0-1296 , PWY-6611 , SALVADEHYPOX-PWY , PWY-6609</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADENOSINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_INOSINE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ADENOSINE__45__KINASE__45__RXN" name="adenosine kinase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_002980)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6619</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADENOSINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ADENOSYLHOMOCYSTEINASE__45__RXN" name="ADENOSYLHOMOCYSTEINASE-RXN" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-22_002610)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-5041 , METHIONINE-DEG1-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ADENOSYL__45__HOMO__45__CYS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADENOSINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HOMO__45__CYS_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ADENOSYLHOMOCYSTEINE__45__NUCLEOSIDASE__45__RXN" name="NAD(P)-binding domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-22_002610)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6154 , PWY-6151 , PWY-6153</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ADENOSYL__45__HOMO__45__CYS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__564_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADENINE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ADENPRIBOSYLTRAN__45__RXN" name="ADENPRIBOSYLTRAN-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_006480) or (Ec-28_000520)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-6610 , PWY-6605 , P121-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ADENINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PRPP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ADENYL__45__KIN__45__RXN" name="Adenylate kinase family protein" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_005110) or (Ec-16_004100) or (Ec-01_006380) or (Ec-07_003680) or (Ec-14_004920) or (Ec-15_000120) or (Ec-00_009240) or (Ec-06_003080) or (Ec-16_005090)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7219</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADP_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ADENYLATECYC__45__RXN" name="adenylate cyclase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_002930)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CAMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ADENYLOSUCCINATE__45__SYNTHASE__45__RXN" name="adenylosuccinate synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-11_002310)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7219</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GTP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_IMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__ASPARTATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADENYLOSUCC_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GDP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ADENYLYLSULFATE__45__REDUCTASE__45__RXN" name="ADENYLYLSULFATE-REDUCTASE-RXN" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
            <p>SUBSYSTEM: P224-PWY , PWY-5279 , DISSULFRED-PWY , PWY-5278</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SO3_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Acceptor_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Donor__45__H2_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_APS_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ADENYLYLSULFKIN__45__RXN" name="Adenylylsulfate kinase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_000180)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5340</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_APS_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PAPS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ADOMET__45__DMK__45__METHYLTRANSFER__45__RXN" name="Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-13_002280) or (Ec-13_003780)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: MENAQUINONESYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__12115_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_S__45__ADENOSYLMETHIONINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_REDUCED__45__MENAQUINONE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADENOSYL__45__HOMO__45__CYS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ADPREDUCT__45__RXN" name="ADP reductase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_000440) or (Ec-06_005120) or (Ec-17_003700) or (Ec-21_002920) or (Ec-11_002180) or (Ec-06_005570) or (Ec-11_002170)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7220 , PWY-7227</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Ox__45__Thioredoxin_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Red__45__Thioredoxin_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_AGMATIN__45__RXN" name="agmatinase, partial" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-17_004310) or (Ec-22_003700) or (Ec-17_004300)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-40 , PWY-6305 , PWY0-823</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AGMATHINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PUTRESCINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_UREA_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_AGMATINE__45__DEIMINASE__45__RXN" name="Agmatine deiminase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_001540)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-43 , ARGDEG-III-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_AGMATHINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__597_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_AICARSYN__45__RXN" name="Adenylosuccinate lyase C-terminal" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-11_002070)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7234 , PWY-6124 , PWY-6123</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_P__45__RIBOSYL__45__4__45__SUCCCARB__45__AMINOIMIDAZOLE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_FUM_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AICAR_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_AICARTRANSFORM__45__RXN" name="Bifunctional purine synthesis protein (phosphoribosylaminoimidazolecarboxamide formyltransferase and IMP cyclohydrolase)" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-11_005390)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6124 , PWY-6123</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_AICAR_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FORMYL__45__THF__45__GLU__45__N_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_THF__45__GLU__45__N_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PHOSPHORIBOSYL__45__FORMAMIDO__45__CARBOXAMIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_AIRCARBOXY__45__RXN" name="Phosphoribosylaminoimidazole carboxylase PurE domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_003270) or (Ec-10_003280) or (Ec-08_006600)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6124</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_5__45__PHOSPHORIBOSYL__45__5__45__AMINOIMIDAZOLE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_PHOSPHORIBOSYL__45__CARBOXY__45__AMINOIMIDAZOLE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ALANINE__45____45__GLYOXYLATE__45__AMINOTRANSFERASE__45__RXN" name="ALANINE--GLYOXYLATE-AMINOTRANSFERASE-RXN" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_003730) or (Ec-14_006580)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: GLYSYN-ALA-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_L__45__ALPHA__45__ALANINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLYOX_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_GLY_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PYRUVATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ALANINE__45____45__TRNA__45__LIGASE__45__RXN" name="alanine-tRNA ligase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-07_007070) or (Ec-20_000890) or (Ec-01_006770)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: TRNA-CHARGING-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__ALPHA__45__ALANINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ALA__45__tRNAs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Charged__45__ALA__45__tRNAs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ALANINE__45__AMINOTRANSFERASE__45__RXN" name="Glutamate:glyoxylate aminotransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_011040)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7383 , PWY-7117 , ALANINE-DEG3-PWY , ALANINE-SYN2-PWY , PWY-7115 , ALACAT2-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__ALPHA__45__ALANINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PYRUVATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLT_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ALANINE__45__DEHYDROGENASE__45__RXN" name="Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_003330)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY1-2</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__ALPHA__45__ALANINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PYRUVATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ALDEHYDE__45__DEHYDROGENASE__45__NADORNOP__43____45__RXN" name="aldehyde dehydrogenase [NAD(P)+]" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-11_002450)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD__45__P__45__OR__45__NOP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Aldehydes_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADH__45__P__45__OR__45__NOP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Carboxylates_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ALDEHYDE__45__DEHYDROGENASE__45__NADP__43____45__RXN" name="aldehyde dehydrogenase [NAD(P)+]" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-11_002450)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7269</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Aldehydes_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Carboxylates_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ALDHDEHYDROG__45__RXN" name="ALDHDEHYDROG-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-11_002450)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-7269</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Aldehydes_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_Carboxylates_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ALDOSE__45__1__45__EPIMERASE__45__RXN" name="ALDOSE-1-EPIMERASE-RXN" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-28_002510)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY0-1466</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ALPHA__45__GLUCOSE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_GLC_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ALDOSE1EPIM__45__RXN" name="ALDOSE1EPIM-RXN" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY66-422 , PWY-6317</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GALACTOSE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ALPHA__45__D__45__GALACTOSE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ALLANTOICASE__45__RXN" name="allantoicase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_010130)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5697</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ALLANTOATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_UREA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__1091_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ALLANTOINASE__45__RXN" name="ALLANTOINASE-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5698 , PWY-5697</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_S__45__ALLANTOIN_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ALLANTOATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ALPHA__45__L__45__FUCOSIDASE__45__RXN" name="PAN-4 domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-17_001310)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AN__45__ALPHA__45__L__45__FUCOSIDE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_L__45__Fucopyranoses_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Alcohols_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ALPHAGALACTOSID__45__RXN" name="Alpha-galactosidase, family GH36" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-17_000840) or (Ec-26_006290) or (Ec-04_003730)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY0-1301</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_MELIBIOSE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Glucopyranose_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_D__45__galactopyranose_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_AMACETOXID__45__RXN" name="primary amine oxidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-15_002910) or (Ec-15_002920)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: THRDLCTCAT-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_AMINO__45__ACETONE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_METHYL__45__GLYOXAL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HYDROGEN__45__PEROXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_AMIDASE__45__RXN" name="Amidase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_009020) or (Ec-02_005910)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Monocarboxylic__45__Acid__45__Amides_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Monocarboxylates_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_AMINEOXID__45__RXN" name="Aliphatic-amine oxidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-15_002920) or (Ec-15_002910)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Aliphatic__45__Amines_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_HYDROGEN__45__PEROXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Aldehydes_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_AMINEPHEN__45__RXN" name="primary amine oxidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-15_002910) or (Ec-15_002920)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: 2PHENDEG-PWY , PWY-5751</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PHENYLETHYLAMINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PHENYLACETALDEHYDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HYDROGEN__45__PEROXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_AMINOCYL__45__TRNA__45__HYDROLASE__45__RXN" name="aminoacyl-tRNA hydrolase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_001700) or (Ec-07_007410) or (Ec-07_007430) or (Ec-07_007720)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_N__45__Substituted__45__Aminoacyl__45__tRNA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_tRNAs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_N__45__Substituted__45__Amino__45__Acids_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_AMINOPARATHION__45__PHOSPHATASE__45__RXN" name="Aminoparathion hydrolase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_006880)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMINO__45__PARATHION_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__259_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DIETHYLTHIOPHOSPHATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_AMP__45__DEAMINASE__45__RXN" name="Adenosine/AMP deaminase domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-00_010560) or (Ec-04_006560)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6596</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_IMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_AMP__45__DEPHOSPHORYLATION__45__RXN" name="5&apos;-nucleotidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-05_000950) or (Ec-12_005060) or (Ec-15_000820)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: SALVADEHYPOX-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADENOSINE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_AMPSYN__45__RXN" name="Adenylosuccinate lyase C-terminal" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-11_002070)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7219</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ADENYLOSUCC_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_FUM_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ANTHRANSYN__45__RXN" name="Anthranilate Synthase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_004370)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6661 , PWY-6660 , PWY-5958 , TRPSYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GLN_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CHORISMATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PYRUVATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ANTHRANILATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLT_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_APIGNAR__45__RXN" name="Naringenin chalcone isomerase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-00_005930) or (Ec-05_001880)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-7397 , PWY1F-FLAVSYN , PWY-6787</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_APIGENIN_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NARINGENIN__45__CMPD_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_APYRASE__45__RXN" name="Apyrase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_001970)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ARGINASE__45__RXN" name="Ureohydrolase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_001100) or (Ec-22_003700)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: ARGASEDEG-PWY , CITRULBIO-PWY , ARG-PRO-PWY , PWY-6305 , PWY-6922 , ARG-GLU-PWY , PWY-4984</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ARG_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_UREA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__ORNITHINE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ARGININE__45____45__TRNA__45__LIGASE__45__RXN" name="DALR anticodon binding" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_001410) or (Ec-01_003640)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: TRNA-CHARGING-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ARG__45__tRNAs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ARG_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Charged__45__ARG__45__tRNAs_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ARGININE__45__2__45__MONOOXYGENASE__45__RXN" name="ARGININE-2-MONOOXYGENASE-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: ARGDEG-V-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ARG_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_4__45__GUANIDO__45__BUTYRAMIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ARGINYLTRANSFERASE__45__RXN" name="Arginyl-tRNA protein transferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_001500)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_General__45__Protein__45__Substrates_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Charged__45__ARG__45__tRNAs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Protein__45__N__45__terminal__45__L__45__Arginine_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ARG__45__tRNAs_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ARGSUCCINLYA__45__RXN" name="Argininosuccinate lyase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_005890)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: ARGSYN-PWY , PWY-7400 , PWY-5154 , PWY-4983 , ARGSYNBSUB-PWY , PWY-4984</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_L__45__ARGININO__45__SUCCINATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ARG_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FUM_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ARGSUCCINSYN__45__RXN" name="argininosuccinate synthetase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_001870)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: ARGSYN-PWY , PWY-7400 , PWY-5154 , PWY-4983 , ARGSYNBSUB-PWY , PWY-4984</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_L__45__CITRULLINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__ASPARTATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__ARGININO__45__SUCCINATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ARYL__45__SULFOTRANSFERASE__45__RXN" name="Aryl sulfotransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_007310) or (Ec-06_007300) or (Ec-06_007320) or (Ec-26_003630) or (Ec-00_005410)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PAPS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Aryl__45__Alcohol_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Aryl__45__sulfates_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__5__45__ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ARYLDIALKYL__45__PHOSPHATASE__45__RXN" name="Aryldialkylphosphatase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_006880)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PARATHION-DEGRADATION-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PARATHION_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_P__45__NITROPHENOL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DIETHYLTHIOPHOSPHATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ARYLDIALKYLPHOSPHATASE__45__RXN" name="Aryldialkylphosphatase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_006880)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Aryl__45__Dialkyl__45__Phosphate_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Aryl__45__Alcohol_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Dialkyl__45__phosphates_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ARYLSULFAT__45__RXN" name="sulfuric ester hydrolase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_004450) or (Ec-03_005320) or (Ec-12_000310) or (Ec-03_005310) or (Ec-07_007630) or (Ec-12_005210) or (Ec-06_009450) or (Ec-12_002050)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Aryl__45__Sulfate_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Aryl__45__Alcohol_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SULFATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ASNSYNA__45__RXN" name="asparagine synthase (glutamine-hydrolyzing)" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-28_000990) or (Ec-15_004750) or (Ec-15_003670)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: ASPARAGINESYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_L__45__ASPARTATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ASN_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ASNSYNB__45__RXN" name="asparagine synthase (glutamine-hydrolyzing)" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-28_000990) or (Ec-15_004750) or (Ec-15_003670)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: ASPARAGINE-BIOSYNTHESIS</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__ASPARTATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLN_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLT_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ASN_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ASPAMINOTRANS__45__RXN" name="Aspartate Aminotransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_007480) or (Ec-03_003270) or (Ec-23_003500)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7383 , PWY-7117 , PWY-5913 , MALATE-ASPARTATE-SHUTTLE-PWY , ASPARTATESYN-PWY , GLUTDEG-PWY , ASPARAGINE-DEG1-PWY-1 , PWY-7115 , ASPARTATE-DEG1-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_L__45__ASPARTATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_OXALACETIC_ACID_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLT_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ASPARAGHYD__45__RXN" name="Asparaginase/glutaminase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-11_002360) or (Ec-27_003980)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: ASPASN-PWY , ASPARAGINE-DEG1-PWY-1 , ASPARAGINE-DEG1-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ASN_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_L__45__ASPARTATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ASPARAGINE__45____45__TRNA__45__LIGASE__45__RXN" name="Asparaginyl-tRNA Synthetase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_001810)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: TRNA-CHARGING-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ASN__45__tRNAs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ASN_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Charged__45__ASN__45__tRNAs_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ASPARTATE__45____45__TRNA__45__LIGASE__45__RXN" name="Aspartyl-tRNA synthetases" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_003810) or (Ec-19_005440)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: TRNA-CHARGING-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ASP__45__tRNAs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__ASPARTATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Charged__45__ASP__45__tRNAs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ASPARTATE__45__SEMIALDEHYDE__45__DEHYDROGENASE__45__RXN" name="Semialdehyde dehydrogenase, NAD-binding" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_007470)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-2941 , PWY-6562 , PWY-7153 , PWY-2942 , P101-PWY , HOMOSERSYN-PWY , DAPLYSINESYN-PWY , PWY-5097 , PWY-6559</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_L__45__ASPARTATE__45__SEMIALDEHYDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__BETA__45__ASPARTYL__45__P_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ASPARTATEKIN__45__RXN" name="aspartate/glutamate/uridylate kinase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-11_000830) or (Ec-24_000610) or (Ec-27_003730) or (Ec-13_002530)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-2941 , PWY-6562 , PWY-7153 , PWY-2942 , P101-PWY , HOMOSERSYN-PWY , DAPLYSINESYN-PWY , PWY-5097 , PWY-6559</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_L__45__ASPARTATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__BETA__45__ASPARTYL__45__P_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ASPCARBTRANS__45__RXN" name="Aspartate carbamoyltransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-00_004630) or (Ec-07_003480)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5686</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CARBAMOYL__45__P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__ASPARTATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBAMYUL__45__L__45__ASPARTATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ATP__45__ADENYLYLTRANSFERASE__45__RXN" name="ATP adenylyltransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-07_002120)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADENOSYL__45__P4_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ATP__45__CITRATE__45__PRO__45__S__45____45__LYASE__45__RXN" name="ATP-CITRATE-PRO-S--LYASE-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_008380)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-5172 , P23-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CIT_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_OXALACETIC_ACID_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACETYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ATPASE__45__RXN" name="ATPase, V1 complex, subunit D" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-28_002990) or (Ec-13_002270) or (Ec-06_002750) or (Ec-10_001840) or (Ec-06_010400) or (Ec-16_001780) or (Ec-28_003630) or (Ec-20_001690) or (Ec-01_008180) or (Ec-11_003120) or (Ec-14_007010) or (Ec-06_004310) or (Ec-27_005790) or (Ec-07_003080) or (Ec-12_001030) or (Ec-28_002430) or (Ec-17_002590) or (Ec-07_006840) or (Ec-07_003070) or (Ec-05_005880) or (Ec-17_000670) or (Ec-08_001420) or (Ec-06_010220) or (Ec-27_004200) or (Ec-12_003900) or (Ec-19_003180) or (Ec-22_002820) or (Ec-15_000900) or (Ec-27_001110) or (Ec-02_001010) or (Ec-19_000810) or (Ec-01_004320) or (Ec-07_005670) or (Ec-14_000420) or (Ec-01_004380) or (Ec-17_000870) or (Ec-24_001160) or (Ec-03_003020) or (Ec-02_004150) or (Ec-12_003840) or (Ec-26_001650) or (Ec-26_002300) or (Ec-27_005230) or (Ec-23_000670) or (Ec-17_003550) or (Ec-27_001560) or (Ec-21_004610) or (Ec-20_004180) or (Ec-23_002050) or (Ec-16_001530) or (Ec-04_001360) or (Ec-02_001070) or (Ec-09_004570) or (Ec-21_006450) or (Ec-12_008700) or (Ec-02_004160) or (Ec-06_009590) or (Ec-01_001290) or (Ec-01_005840) or (Ec-14_004310) or (Ec-26_001660) or (Ec-01_000320) or (Ec-02_003270) or (Ec-25_000240) or (Ec-16_000930) or (Ec-01_003540) or (Ec-12_006770) or (Ec-22_001310) or (Ec-24_001900) or (Ec-01_010560) or (Ec-06_005470) or (Ec-25_000810) or (Ec-02_005730) or (Ec-01_009240) or (Ec-23_001940) or (Ec-24_004140) or (Ec-08_003250) or (Ec-01_006580) or (Ec-03_001180) or (Ec-10_003770) or (Ec-25_000100) or (Ec-17_003840) or (Ec-14_001870) or (Ec-05_006870) or (Ec-12_009100) or (Ec-15_000520) or (Ec-01_007190) or (Ec-27_005310) or (Ec-08_005610) or (Ec-01_009220) or (Ec-07_004670) or (Ec-24_004170) or (Ec-19_000200) or (Ec-27_001730) or (Ec-27_002260) or (Ec-05_005340) or (Ec-03_001280) or (Ec-22_001850) or (Ec-26_005290) or (Ec-08_000260) or (Ec-09_002160) or (Ec-19_004960) or (Ec-04_001470) or (Ec-15_003980) or (Ec-08_005820) or (Ec-16_005110) or (Ec-24_004110) or (Ec-20_000120) or (Ec-27_001550) or (Ec-06_006490) or (Ec-26_000530) or (Ec-03_004860) or (Ec-01_009400) or (Ec-20_001610) or (Ec-19_005450) or (Ec-05_001470) or (Ec-18_004660) or (Ec-07_006520) or (Ec-08_001720) or (Ec-24_004130) or (Ec-28_000420) or (Ec-26_001670) or (Ec-01_003690) or (Ec-19_002420) or (Ec-04_005690)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ATPPHOSPHORIBOSYLTRANS__45__RXN" name="Nitrogen regulatory PII-like, alpha/beta" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-18_003520)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: HISTSYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PHOSPHORIBOSYL__45__ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PRPP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ATPSYN__45__RXN" name="proton-transporting ATPase activity, rotational mechanism" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_004200) or (Ec-19_003180) or (Ec-06_004310) or (Ec-07_006840) or (Ec-06_010220) or (Ec-25_001860) or (Ec-27_005790) or (Ec-07_003070) or (Ec-26_003670) or (Ec-14_007010)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7219</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_e" stoichiometry="4" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="3" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_BADH__45__RXN" name="BADH-RXN" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-20_003790)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY1F-353 , PWY-7494 , PWY-3722 , CHOLINE-BETAINE-ANA-PWY , BETSYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_BETAINE_ALDEHYDE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_BETAINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_BENZALDEHYDE__45__DEHYDROGENASE__45__NAD__43____45__RXN" name="BENZALDEHYDE-DEHYDROGENASE-NAD+-RXN" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6446 , PWY-6444 , PWY-6763 , PWY-1501 , PWY-6766 , TOLUENE-DEG-CATECHOL-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_BENZALDEHYDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_BENZOATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_BENZALDEHYDE__45__DEHYDROGENASE__45__NADP__43____45__RXN" name="BENZALDEHYDE-DEHYDROGENASE-NADP+-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-1501</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_BENZALDEHYDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_BENZOATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_BETA__45__LACTAMASE__45__RXN" name="beta-lactamase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_006270)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Beta__45__Lactams_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__8550_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_BETA__45__UREIDOPROPIONASE__45__RXN" name="BETA-UREIDOPROPIONASE-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_003010)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-3982</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__UREIDO__45__PROPIONATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_B__45__ALANINE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_BETAGALACTOSID__45__RXN" name="&amp;beta;-galactosidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_007000) or (Ec-06_001410)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: BGALACT-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__15972_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Glucopyranose_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GALACTOSE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_BIOTINLIG__45__RXN" name="Biotin/lipoate A/B protein ligase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-05_005190) or (Ec-00_003530) or (Ec-11_004970) or (Ec-01_008620)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY0-1264</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_BIOTIN_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_BCCP__45__monomers_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_BCCP__45__biotin__45__monomers_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_BRANCHED__45__CHAINAMINOTRANSFERILEU__45__RXN" name="branched-chain-amino-acid transaminase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_007170) or (Ec-12_005520) or (Ec-20_001390) or (Ec-12_005560) or (Ec-12_005530)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5108 , PWY-5104 , PWY-5101 , PWY-5078 , ILEUSYN-PWY , ILEUDEG-PWY , PWY-5103</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ILE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_GLT_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__KETO__45__3__45__METHYL__45__VALERATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_BRANCHED__45__CHAINAMINOTRANSFERLEU__45__RXN" name="branched-chain-amino-acid transaminase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_005560) or (Ec-20_001390) or (Ec-12_005530) or (Ec-12_005520)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5076 , LEU-DEG2-PWY , LEUSYN-PWY , PWY-7767</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_LEU_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_2K__45__4CH3__45__PENTANOATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLT_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_BRANCHED__45__CHAINAMINOTRANSFERVAL__45__RXN" name="branched-chain-amino-acid transaminase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_005560) or (Ec-20_001390) or (Ec-12_005530) or (Ec-12_005520)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: VALSYN-PWY , VALDEG-PWY , PWY-5057 , ALANINE-VALINESYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_VAL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_GLT_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__KETO__45__ISOVALERATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_BTUR2__45__RXN" name="cob(I)yrinic acid a,c-diamide adenosyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_010830)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: COBALSYN-PWY , PWY-6269</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_COBINAMIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADENOSYLCOBINAMIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_P3I_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_CAFFEOYL__45__COA__45__O__45__METHYLTRANSFERASE__45__RXN" name="S-adenosyl-L-methionine-dependent methyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-28_003750)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-361 , PWY-7498 , PWY-5710 , PWY-7398 , PWY-1121 , PWY-6792 , PWY-6039</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_S__45__ADENOSYLMETHIONINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CAFFEOYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADENOSYL__45__HOMO__45__CYS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FERULOYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_CARBAMATE__45__KINASE__45__RXN" name="CARBAMATE-KINASE-RXN" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY0-41 , CITRULLINE-DEG-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBAMOYL__45__P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_CARBODEHYDRAT__45__RXN" name="Carbonic anhydrase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_001960) or (Ec-22_001150) or (Ec-10_002770) or (Ec-06_004120) or (Ec-27_005680) or (Ec-05_001290) or (Ec-16_004700) or (Ec-07_004610)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_H2CO3_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_CARBOXYLESTERASE__45__RXN" name="carboxylic ester hydrolase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_004830) or (Ec-16_002070) or (Ec-19_001900) or (Ec-12_006850) or (Ec-25_000250)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Carboxylic__45__esters_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Alcohols_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Carboxylates_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_CARBOXYPEPTIDASE__45__A__45__RXN" name="obsolete carboxypeptidase A" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-24_002450) or (Ec-24_000110) or (Ec-00_003690) or (Ec-14_005250)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Peptides__45__holder_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Peptides__45__holder_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__Amino__45__Acids_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_CARBPSYN__45__RXN" name="carbamoyl-phosphate synthase (glutamine-hydrolyzing)" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_006110)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: ARGSYN-PWY , PWY-7400 , PWY-5686 , PWY-5154 , ARGSYNBSUB-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_HCO3_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLN_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_CARBAMOYL__45__P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLT_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_CATAL__45__RXN" name="Catalase-peroxidase haem" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-00_008210) or (Ec-07_004600) or (Ec-02_000470) or (Ec-05_003380) or (Ec-00_010030) or (Ec-11_003410) or (Ec-07_001420) or (Ec-00_008240) or (Ec-00_008230)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5506 , DETOX1-PWY , DETOX1-PWY-1</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_HYDROGEN__45__PEROXIDE_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_CDPDIGLYSYN__45__RXN" name="Phosphatidate cytidylyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-14_002980) or (Ec-17_000480) or (Ec-05_001740) or (Ec-16_001970) or (Ec-14_003790) or (Ec-15_001900)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5667 , PWY0-1319 , PWY-5981</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_L__45__PHOSPHATIDATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CTP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CDPDIACYLGLYCEROL_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_CDPKIN__45__RXN" name="nucleoside diphosphate kinase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-04_001140) or (Ec-11_004330) or (Ec-22_003280) or (Ec-07_000140) or (Ec-26_003930) or (Ec-03_001380) or (Ec-11_005170)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7205</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CDP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CTP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_CDPREDUCT__45__RXN" name="Ribonucleoside-diphosphate reductase small chain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_000440) or (Ec-06_005120) or (Ec-17_003700) or (Ec-21_002920) or (Ec-11_002180) or (Ec-06_005570) or (Ec-11_002170)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7184 , PWY-7198 , PWY0-166 , PWY-6545 , PWY-7210</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Red__45__Thioredoxin_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CDP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_DCDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Ox__45__Thioredoxin_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_CELLULOSE__45__SYNTHASE__45__UDP__45__FORMING__45__RXN" name="Cellulose synthase (UDP-forming), family GT2" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_004280) or (Ec-20_004990) or (Ec-03_004240) or (Ec-28_000090) or (Ec-22_003060) or (Ec-20_004980) or (Ec-03_004230) or (Ec-10_002530) or (Ec-05_002250)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-1001</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__12575_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CELLULOSE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_UDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CELLULOSE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_CERAMIDASE__45__RXN" name="Ceramidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_006010)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY3DJ-11470</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_N__45__Acylsphingosine_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_SPHINGOSINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Fatty__45__Acids_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_CERAMIDASE__45__YEAST__45__RXN" name="Ceramidase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_006010)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY66-388 , PWY-7119</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Alpha__45__hydroxyphytoceramides_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PHYTOSPINGOSINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__Hydroxy__45__Fatty__45__Acids_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_CHD__45__RXN" name="choline dehydrogenase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-00_005920)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: BETSYN-PWY , CHOLINE-BETAINE-ANA-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Acceptor_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CHOLINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Donor__45__H2_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_BETAINE_ALDEHYDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_CHOLINE__45__KINASE__45__RXN" name="choline/ethanolamine kinase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_004110)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7782 , PWY3O-450</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CHOLINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PHOSPHORYL__45__CHOLINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_CHORISMATE__45__SYNTHASE__45__RXN" name="Chorismate synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-11_005820)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6163</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_3__45__ENOLPYRUVYL__45__SHIKIMATE__45__5P_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CHORISMATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_CHORISMATEMUT__45__RXN" name="Chorismate mutase, AroQ class, eukaryotic type" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_003130) or (Ec-01_007700)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6120 , PWY-7626 , PWY-3461 , PWY-6627 , TYRSYN , PWY-3462 , PHESYN</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CHORISMATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PREPHENATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_CITSYN__45__RXN" name="CITSYN-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5750 , PWY-6549 , GLYOXYLATE-BYPASS , PWY66-398 , PWY-7124 , PWY-6728 , FERMENTATION-PWY , PWY-5913 , P105-PWY , PWY-7254 , TCA , PWY-6969 , REDCITCYC , PWY-5690</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXALACETIC_ACID_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACETYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CIT_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_COBALADENOSYLTRANS__45__RXN" name="cob(I)yrinic acid a,c-diamide adenosyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_010830)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6268</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_COB__45__I__45__ALAMIN_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_P3I_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADENOSYLCOBALAMIN_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_CREATINASE__45__RXN" name="Creatinase/Aminopeptidase P, N-terminal" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_008580)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: CRNFORCAT-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CREATINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_UREA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SARCOSINE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_CREATINE__45__KINASE__45__RXN" name="creatine kinase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-14_002050)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6158</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CREATINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CREATINE__45__P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_CTPSYN__45__RXN" name="CTP synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-20_000910) or (Ec-00_000570)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7185 , PWY-7177 , PWY-7176</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GLN_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_UTP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_CTP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLT_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_CYCLOARTENOL__45__SYNTHASE__45__RXN" name="Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-00_010980) or (Ec-07_006170)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6109 , PWY-2541 , PWY-7155 , PWY-6098 , PWY-6115 , PWY-7154</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_EPOXYSQUALENE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CYCLOARTENOL_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_CYCLOEUCALENOL__45__CYCLOISOMERASE__45__RXN" name="Cycloeucalenol cycloisomerase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-05_000840)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-2541 , PWY-7155</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CYCLOEUCALENOL_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_OBTUSIFOLIOL_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_CYCLOHEXADIENYL__45__DEHYDROGENASE__45__RXN" name="CYCLOHEXADIENYL-DEHYDROGENASE-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
            <p>SUBSYSTEM: PWY-6120</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__659_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_TYR_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_CYSPH__45__RXN" name="CYSPH-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
            <p>SUBSYSTEM: PWY-702</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CYS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_O__45__PHOSPHO__45__L__45__HOMOSERINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__CYSTATHIONINE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_CYSTATHIONASE__45__RXN" name="CYSTATHIONASE-RXN" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__CYSTATHIONINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CYS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HOMO__45__SER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_CYSTATHIONINE__45__BETA__45__LYASE__45__RXN" name="Cys/Met metabolism, pyridoxal phosphate-dependent enzyme" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-05_006760) or (Ec-00_002820)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__CYSTATHIONINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PYRUVATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HOMO__45__CYS_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_CYSTATHIONINE__45__BETA__45__SYNTHASE__45__RXN" name="Cystathionine beta-synthase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_002870)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: HOMOCYSDEGR-PWY , PWY-801</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_HOMO__45__CYS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_L__45__CYSTATHIONINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_CYSTEAMINE__45__DIOXYGENASE__45__RXN" name="cysteamine dioxygenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-23_001060) or (Ec-27_003300)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5331</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__239_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_HYPOTAURINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_CYSTEINE__45____45__TRNA__45__LIGASE__45__RXN" name="Cysteinyl-tRNA Synthetase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_001440) or (Ec-02_002270) or (Ec-10_004180)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: TRNA-CHARGING-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CYS__45__tRNAs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CYS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Charged__45__CYS__45__tRNAs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_CYSTEINE__45__AMINOTRANSFERASE__45__RXN" name="CYSTEINE-AMINOTRANSFERASE-RXN" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_003270)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY0-1534 , PWY-5329</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CYS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_3__45__MERCAPTO__45__PYRUVATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLT_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_CYSTEINE__45__DIOXYGENASE__45__RXN" name="cysteine dioxygenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-18_002940)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: CYSTEINE-DEG-PWY , PWY-5331</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CYS_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_3__45__SULFINOALANINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_CYSTHIOCYS__45__RXN" name="Pyridoxal phosphate-dependent transferase, major region, subdomain 1" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_003100)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CYSTINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_THIOCYSTEINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PYRUVATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_CYTIDEAM2__45__RXN" name="CYTIDEAM2-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7193 , PWY0-1295 , PWY-6556</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CYTIDINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_URIDINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_CYTIKIN__45__RXN" name="CYTIKIN-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7193 , PWY-5532</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CYTIDINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_CYTOCHROME__45__B5__45__REDUCTASE__45__RXN" name="NADH:cytochrome b5 reductase (CBR)" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-07_006860) or (Ec-09_002720)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FERRICYTOCHROME__45__B5_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_FERROCYTOCHROME__45__B5_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_CYTOCHROME__45__C__45__OXIDASE__45__RXN" name="cytochrome-c oxidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_005020) or (Ec-01_001120) or (Ec-07_006760)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7279 , PWY-4521 , PWY-3781</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="8" constant="false"/>
          <speciesReference species="M_Cytochromes__45__C__45__Reduced_e" stoichiometry="4" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_e" stoichiometry="4" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_Cytochromes__45__C__45__Oxidized_e" stoichiometry="4" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_D__45__ALANINE__45__AMINOTRANSFERASE__45__RXN" name="D-alanine:2-oxoglutarate aminotransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_011040)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_D__45__ALANINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PYRUVATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_D__45__GLT_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_DADPKIN__45__RXN" name="nucleoside diphosphate kinase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-04_001140) or (Ec-11_004330) or (Ec-22_003280) or (Ec-07_000140) or (Ec-26_003930) or (Ec-03_001380) or (Ec-11_005170)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7220 , PWY-7227 , PWY-7224</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DADP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_DATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_DAHPSYN__45__RXN" name="3-deoxy-7-phosphoheptulonate synthase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_004250)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6164</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ERYTHROSE__45__4P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PHOSPHO__45__ENOL__45__PYRUVATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__DEOXY__45__D__45__ARABINO__45__HEPTULOSONATE__45__7__45__P_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_DAPASYN__45__RXN" name="Bifunctional dethiobiotin synthetase/7,8-diamino-pelargonic acid aminotransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_005750)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY0-1507</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_8__45__AMINO__45__7__45__OXONONANOATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_S__45__ADENOSYLMETHIONINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_DIAMINONONANOATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_S__45__ADENOSYL__45__4__45__METHYLTHIO__45__2__45__OXOBUTANOATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_DCDPKIN__45__RXN" name="nucleoside diphosphate kinase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-04_001140) or (Ec-11_004330) or (Ec-22_003280) or (Ec-07_000140) or (Ec-26_003930) or (Ec-11_005170) or (Ec-03_001380)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7184 , PWY-7198 , PWY0-166 , PWY-6545 , PWY-7197 , PWY-7210</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_DCDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DCTP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_DCMP__45__DEAMINASE__45__RXN" name="DCMP-DEAMINASE-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_003010)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-7210</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_DCMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DUMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_DEOXYHYPUSINE__45__MONOOXYGENASE__45__RXN" name="DEOXYHYPUSINE-MONOOXYGENASE-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5905</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__9973_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Donor__45__H2_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Acceptor_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_EIF5A__45__HYPUSINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_DEOXYRIBODIPYRIMIDINE__45__PHOTOLYASE__45__RXN" name="DNA photolyase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_001260) or (Ec-10_005990) or (Ec-01_008100) or (Ec-01_008080)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_DNA__45__With__45__Pyrimidine__45__Dimers_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_DNA__45__Adjacent__45__Pyrimidines_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_DEPHOSPHOCOAKIN__45__RXN" name="dephospho-CoA kinase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_004890)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: COA-PWY , COA-PWY-1</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DEPHOSPHO__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_DETHIOBIOTIN__45__SYN__45__RXN" name="Bifunctional dethiobiotin synthetase/7,8-diamino-pelargonic acid aminotransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_005750)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY0-1507 , PWY-7380</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_DIAMINONONANOATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="3" constant="false"/>
          <speciesReference species="M_DETHIOBIOTIN_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_DGDPKIN__45__RXN" name="nucleoside diphosphate kinase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-04_001140) or (Ec-11_004330) or (Ec-22_003280) or (Ec-07_000140) or (Ec-26_003930) or (Ec-11_005170) or (Ec-03_001380)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7226 , PWY-7222 , PWY-7224</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DGDP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DGTP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_DHBDEHYD__45__RXN" name="Glucose/ribitol dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_004330)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5901</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DIHYDRO__45__DIOH__45__BENZOATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__3__45__DIHYDROXYBENZOATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_DIACYLGLYCEROL__45__O__45__ACYLTRANSFERASE__45__RXN" name="Diacylglycerol acyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_003060) or (Ec-04_003220) or (Ec-05_001450) or (Ec-25_000060) or (Ec-21_003280) or (Ec-01_006330)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: TRIGLSYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ACYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DIACYLGLYCEROL_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Triacylglycerols_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_DIACYLGLYKIN__45__RXN" name="diacylglycerol kinase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_002120) or (Ec-18_000550) or (Ec-27_006490) or (Ec-18_000560)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7039</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_DIACYLGLYCEROL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__PHOSPHATIDATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_DIAMINOPIMDECARB__45__RXN" name="PLP-binding barrel" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-09_002360) or (Ec-09_002410) or (Ec-09_002420) or (Ec-01_000060)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-2941 , PWY-2942 , PWY-5097 , DAPLYSINESYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MESO__45__DIAMINOPIMELATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_LYS_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_DIAMINOPIMEPIM__45__RXN" name="Diaminopimelate epimerase, DapF" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_009100)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-2941 , PWY-5097 , DAPLYSINESYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_LL__45__DIAMINOPIMELATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_MESO__45__DIAMINOPIMELATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_DIENOYLCOAREDUCT__45__RXN" name="NAD(P)-binding domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_003950)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_T2__45__C4__45__DECADIENYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_T2__45__DECENOYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_DIHYDRODIPICSYN__45__RXN" name="DIHYDRODIPICSYN-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
            <p>SUBSYSTEM: PWY-2941 , PWY-2942 , PWY-5097 , DAPLYSINESYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PYRUVATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__ASPARTATE__45__SEMIALDEHYDE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__14443_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_DIHYDROFOLATEREDUCT__45__RXN" name="Tetrahydrofolate dehydrogenase/cyclohydrolase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-07_007470) or (Ec-27_004630) or (Ec-14_004070) or (Ec-15_001370)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-3841 , 1CMET2-PWY , PWY-6614</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DIHYDROFOLATE__45__GLU__45__N_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_THF__45__GLU__45__N_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_DIHYDROFOLATEREDUCT__45__RXN__45__THF__47__NADP__47____47__DIHYDROFOLATE__47__NADPH__47__PROTON__46__37__46__" name="DIHYDROFOLATEREDUCT-RXN-THF/NADP//DIHYDROFOLATE/NADPH/PROTON.37." reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_DIHYDROFOLATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_THF_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_DIHYDROFOLATESYNTH__45__RXN" name="Folylpolyglutamate synthase, mitochondrial" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-07_002300) or (Ec-01_004980)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6614</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GLT_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_7__45__8__45__DIHYDROPTEROATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_DIHYDROFOLATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_DIHYDROKAEMPFEROL__45__4__45__REDUCTASE__45__RXN" name="NAD(P)-binding domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_001350) or (Ec-23_001220) or (Ec-12_005240)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY1F-823</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DIHYDROKAEMPFEROL__45__CMPD_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_LEUCOPELARGONIDIN__45__CMPD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_DIHYDRONEOPTERIN__45__MONO__45__P__45__DEPHOS__45__RXN" name="DIHYDRONEOPTERIN-MONO-P-DEPHOS-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-04_000920) or (Ec-09_003740) or (Ec-14_006830) or (Ec-12_006470) or (Ec-19_003700) or (Ec-06_009970) or (Ec-19_001450) or (Ec-10_002470) or (Ec-15_000350) or (Ec-24_003120) or (Ec-19_001310) or (Ec-15_001630) or (Ec-06_010060) or (Ec-19_001540) or (Ec-12_001230) or (Ec-10_002170) or (Ec-15_000660) or (Ec-14_006970) or (Ec-00_002040) or (Ec-01_009100) or (Ec-01_000090) or (Ec-06_007890) or (Ec-22_000120) or (Ec-05_006830) or (Ec-09_003200) or (Ec-18_000740) or (Ec-15_003300)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-6797 , PWY-6147 , PWY-7539</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_DIHYDRONEOPTERIN__45__P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DIHYDRO__45__NEO__45__PTERIN_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_DIHYDROOROT__45__RXN" name="DIHYDROOROT-RXN" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5686</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_DI__45__H__45__OROTATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBAMYUL__45__L__45__ASPARTATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_DIHYDROOROTATE__45__DEHYDROGENASE__45__RXN" name="dihydroorotate dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_005670)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_DI__45__H__45__OROTATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ETR__45__Quinones_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ETR__45__Quinols_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OROTATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_DIHYDROXYISOVALDEHYDRAT__45__RXN" name="Dihydroxy-acid/6-phosphogluconate dehydratase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_000220)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: VALSYN-PWY , PWY-7111</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__13357_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_2__45__KETO__45__ISOVALERATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_DIHYDROXYMETVALDEHYDRAT__45__RXN" name="2,3-Dihydroxy-3-methylvalerate dehydratase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_000220)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5101 , ILEUSYN-PWY , PWY-5103 , PWY-5104</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_1__45__KETO__45__2__45__METHYLVALERATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__KETO__45__3__45__METHYL__45__VALERATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_DIOHBUTANONEPSYN__45__RXN" name="3,4-dihydroxy-2-butanone-4-phosphate synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_004040)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6168 , PWY-6167 , RIBOSYN2-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_RIBULOSE__45__5P_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_DIHYDROXY__45__BUTANONE__45__P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FORMATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_DIPHOSPHOMEVALONTE__45__DECARBOXYLASE__45__RXN" name="GHMP kinase, C-terminal domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_001440)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-922 , PWY-7391</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__641_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_DELTA3__45__ISOPENTENYL__45__PP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_DISULFOXRED__45__RXN" name="protein disulfide oxidoreductase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_000430) or (Ec-05_004840) or (Ec-21_005080) or (Ec-26_003600) or (Ec-21_003380) or (Ec-11_002590)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Protein__45__Red__45__Disulfides_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Protein__45__Ox__45__Disulfides_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_DISULISOM__45__RXN" name="Protein disulfide isomerase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-11_003940) or (Ec-19_003170) or (Ec-19_003370)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_General__45__Protein__45__Substrates_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_General__45__Protein__45__Substrates_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_DNA__45__CYTOSINE__45__5__45____45__METHYLTRANSFERASE__45__RXN" name="tRNA (cytosine-5-)-methyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_012190)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_DNA__45__Cytosines_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_S__45__ADENOSYLMETHIONINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADENOSYL__45__HOMO__45__CYS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_5__45__Methylcytosine__45__DNA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_DNA__45__DIRECTED__45__DNA__45__POLYMERASE__45__RXN" name="DNA-directed DNA polymerase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_001440) or (Ec-12_003800) or (Ec-07_001590) or (Ec-01_006080) or (Ec-08_004310) or (Ec-27_004290) or (Ec-06_005880) or (Ec-00_006320) or (Ec-17_000910) or (Ec-12_001530) or (Ec-00_003210) or (Ec-19_003590) or (Ec-04_003770) or (Ec-11_000450) or (Ec-27_001420) or (Ec-11_006010) or (Ec-04_005890) or (Ec-17_000370) or (Ec-25_001550)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_DNA__45__N_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Deoxy__45__Ribonucleoside__45__Triphosphates_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DNA__45__N_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_DNA__45__DIRECTED__45__RNA__45__POLYMERASE__45__RXN" name="DNA-directed RNA polymerase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_003770) or (Ec-07_003640) or (Ec-00_002530) or (Ec-00_002160) or (Ec-10_004770) or (Ec-25_003070) or (Ec-12_006450) or (Ec-01_005040) or (Ec-08_001270) or (Ec-06_000280) or (Ec-12_005940) or (Ec-00_003160) or (Ec-04_001110) or (Ec-16_000770) or (Ec-15_003650) or (Ec-01_006640) or (Ec-12_008560) or (Ec-14_004750) or (Ec-12_005950) or (Ec-11_006010) or (Ec-21_000330) or (Ec-04_006380) or (Ec-24_002610) or (Ec-12_005690) or (Ec-24_001300) or (Ec-10_004380) or (Ec-03_002970) or (Ec-14_001310) or (Ec-05_004090)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_RNA__45__Holder_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Nucleoside__45__Triphosphates_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_RNA__45__Holder_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_DNA__45__LIGASE__45__ATP__45__RXN" name="DNA ligase (ATP)" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_011680) or (Ec-07_005930)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_DNA__45__N_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DEOXYNUCLEOTIDESM_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DEOXYNUCLEOTIDESM_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_DOLICHOL__45__KINASE__45__RXN" name="dolichol kinase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-00_001300)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6129</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_DOLICHOL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CTP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DOLICHOLP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CDP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_DOLICHYLDIPHOSPHATASE__45__RXN" name="Phosphatidic acid phosphatase type 2/haloperoxidase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-04_001210)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__224_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DOLICHOLP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_DOPAMINE__45__BETA__45__MONOOXYGENASE__45__RXN" name="dopamine beta-monooxygenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_000380) or (Ec-10_000400) or (Ec-10_002350) or (Ec-10_002360) or (Ec-10_000390) or (Ec-11_003250)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY66-301</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DOPAMINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ASCORBATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NOREPINEPHRINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__DEHYDRO__45__ASCORBATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_DTDPGLUCDEHYDRAT__45__RXN" name="dTDP-glucose 4,6-dehydratase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_005770) or (Ec-01_007350)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7312 , PWY-7301 , PWY-6808 , PWY-6973 , PWY-6976 , DTDPRHAMSYN-PWY , PWY-3221 , PWY-7316 , PWY-7413 , PWY-7440 , PWY-6942 , PWY-7657 , PWY-7318 , PWY-7315 , PWY-7104 , PWY-6953 , PWY-6974 , PWY-7688 , PWY-7414</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_DTDP__45__D__45__GLUCOSE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_DTDP__45__DEOH__45__DEOXY__45__GLUCOSE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_DTDPKIN__45__RXN" name="nucleoside diphosphate kinase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-04_001140) or (Ec-11_004330) or (Ec-22_003280) or (Ec-07_000140) or (Ec-26_003930) or (Ec-03_001380) or (Ec-11_005170)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7184 , PWY-7198 , PWY0-166 , PWY-7187 , PWY-6545 , PWY-7197 , PWY-7210</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_TDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_TTP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_DTMPKI__45__RXN" name="thymidylate kinase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-20_004950)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7184 , PWY-7187 , PWY0-166 , PWY-7198 , PWY-6545 , PWY-7197 , PWY-7210</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_TMP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_TDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_DUDPKIN__45__RXN" name="nucleoside diphosphate kinase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-04_001140) or (Ec-11_004330) or (Ec-22_003280) or (Ec-07_000140) or (Ec-26_003930) or (Ec-03_001380) or (Ec-11_005170)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6545 , PWY-7184 , PWY0-166</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DUDP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DUTP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_DUTP__45__PYROP__45__RXN" name="DUTP-PYROP-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-13_002810)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7184 , PWY0-166 , PWY-7206 , PWY-6545 , PWY-7187</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DUTP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DUMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_DXPREDISOM__45__RXN" name="1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_007940)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7560 , NONMEVIPP-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_2__45__C__45__METHYL__45__D__45__ERYTHRITOL__45__4__45__PHOSPHATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DEOXYXYLULOSE__45__5P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_DXS__45__RXN" name="Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-15_004230)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7560 , NONMEVIPP-PWY , PWY-6892 , PWY-6891 , PYRIDOXSYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GAP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PYRUVATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_DEOXYXYLULOSE__45__5P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ENOYL__45__ACP__45__REDUCT__45__NADH__45__RXN" name="2,3,4-saturated-fatty-acid-[acp] reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_002470)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: FASYN-ELONG-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_TRANS__45__D2__45__ENOYL__45__ACP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Saturated__45__Fatty__45__Acyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ENOYL__45__COA__45__DELTA__45__ISOM__45__RXN" name="Enoyl-CoA hydratase/isomerase family protein" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-20_003150)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: FAO-PWY , PWY-5137</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CIS__45__DELTA3__45__ENOYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_TRANS__45__D2__45__ENOYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ENOYL__45__COA__45__HYDRAT__45__RXN" name="ClpP/crotonase-like domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_001380) or (Ec-16_001250) or (Ec-16_003560) or (Ec-14_006530)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5136 , PWY-7007 , PWY-5138 , PWY66-391 , FAO-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_TRANS__45__D2__45__ENOYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_L__45__3__45__HYDROXYACYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ENTDB__45__RXN" name="holo-[acyl-carrier-protein] synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_004620) or (Ec-01_000130)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: ENTBACSYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Apo__45__EntB_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_3__45__5__45__ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Holo__45__EntB_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ETHANOLAMINE__45__KINASE__45__RXN" name="choline/ethanolamine kinase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_004110)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY4FS-6 , PWY-3385 , PWY-7782</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ETHANOL__45__AMINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PHOSPHORYL__45__ETHANOLAMINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ETHANOLAMINEPHOSPHOTRANSFERASE__45__RXN" name="ETHANOLAMINEPHOSPHOTRANSFERASE-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY4FS-6</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CDP__45__ETHANOLAMINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DIACYLGLYCEROL_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__1__45__PHOSPHATIDYL__45__ETHANOLAMINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ExchangeSeed_ADENOSYLCOBALAMIN" name="ExchangeSeed_ADENOSYLCOBALAMIN" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ADENOSYLCOBALAMIN_C__45__BOUNDARY" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADENOSYLCOBALAMIN_e" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ExchangeSeed_AMMONIA" name="ExchangeSeed_AMMONIA" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_AMMONIA_C__45__BOUNDARY" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMMONIA_e" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ExchangeSeed_BIOTIN" name="ExchangeSeed_BIOTIN" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_BIOTIN_C__45__BOUNDARY" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_BIOTIN_e" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ExchangeSeed_CA__43__2" name="ExchangeSeed_CA+2" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CA__43__2_C__45__BOUNDARY" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CA__43__2_e" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ExchangeSeed_CARBON__45__DIOXIDE" name="ExchangeSeed_CARBON-DIOXIDE" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CARBON__45__DIOXIDE_C__45__BOUNDARY" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBON__45__DIOXIDE_e" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ExchangeSeed_CL__45__" name="ExchangeSeed_CL-" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CL__45___C__45__BOUNDARY" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CL__45___e" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ExchangeSeed_CO__43__2" name="ExchangeSeed_CO+2" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CO__43__2_C__45__BOUNDARY" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CO__43__2_e" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ExchangeSeed_COB__45__I__45__ALAMIN" name="ExchangeSeed_COB-I-ALAMIN" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_COB__45__I__45__ALAMIN_C__45__BOUNDARY" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_COB__45__I__45__ALAMIN_e" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ExchangeSeed_CPD__45__3" name="ExchangeSeed_CPD-3" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__3_C__45__BOUNDARY" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__3_e" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ExchangeSeed_CPD__45__315" name="ExchangeSeed_CPD-315" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__315_C__45__BOUNDARY" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__315_e" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ExchangeSeed_CU__43__" name="ExchangeSeed_CU+" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CU__43___C__45__BOUNDARY" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CU__43___e" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ExchangeSeed_CU__43__2" name="ExchangeSeed_CU+2" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CU__43__2_C__45__BOUNDARY" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CU__43__2_e" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ExchangeSeed_EDTA" name="ExchangeSeed_EDTA" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_EDTA_C__45__BOUNDARY" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_EDTA_e" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ExchangeSeed_FE__43__2" name="ExchangeSeed_FE+2" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_FE__43__2_C__45__BOUNDARY" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_FE__43__2_e" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ExchangeSeed_FE__43__3" name="ExchangeSeed_FE+3" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_FE__43__3_C__45__BOUNDARY" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_FE__43__3_e" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ExchangeSeed_K__43__" name="ExchangeSeed_K+" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_K__43___C__45__BOUNDARY" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_K__43___e" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ExchangeSeed_Light" name="ExchangeSeed_Light" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Light_C__45__BOUNDARY" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Light_e" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ExchangeSeed_MG__43__2" name="ExchangeSeed_MG+2" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_MG__43__2_C__45__BOUNDARY" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_MG__43__2_e" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ExchangeSeed_MN__43__2" name="ExchangeSeed_MN+2" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_MN__43__2_C__45__BOUNDARY" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_MN__43__2_e" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ExchangeSeed_NA__43__" name="ExchangeSeed_NA+" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NA__43___C__45__BOUNDARY" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NA__43___e" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ExchangeSeed_NITRATE" name="ExchangeSeed_NITRATE" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NITRATE_C__45__BOUNDARY" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NITRATE_e" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ExchangeSeed_OXYGEN__45__MOLECULE" name="ExchangeSeed_OXYGEN-MOLECULE" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXYGEN__45__MOLECULE_C__45__BOUNDARY" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_OXYGEN__45__MOLECULE_e" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ExchangeSeed_PROTON" name="ExchangeSeed_PROTON" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_C__45__BOUNDARY" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_e" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ExchangeSeed_SULFATE" name="ExchangeSeed_SULFATE" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_SULFATE_C__45__BOUNDARY" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_SULFATE_e" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ExchangeSeed_THIAMINE" name="ExchangeSeed_THIAMINE" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_THIAMINE_C__45__BOUNDARY" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_THIAMINE_e" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ExchangeSeed_WATER" name="ExchangeSeed_WATER" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_C__45__BOUNDARY" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_e" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ExchangeSeed_ZN__43__2" name="ExchangeSeed_ZN+2" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ZN__43__2_C__45__BOUNDARY" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ZN__43__2_e" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_Exchange_BIOMASS" name="Exchange_BIOMASS" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_BIOMASS_e" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_BIOMASS_C__45__BOUNDARY" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_F16ALDOLASE__45__RXN" name="fructose-bisphosphate aldolase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-14_001680) or (Ec-10_004980) or (Ec-01_008040) or (Ec-10_000880)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: GLUCONEO-PWY , PWY-7385 , SUCSYN-PWY , PWY-1861 , P185-PWY , P341-PWY , ANAGLYCOLYSIS-PWY , PWY-1042 , CALVIN-PWY , PWY-5484 , PWY66-399 , PWY-6142 , GLYCOLYSIS</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_FRUCTOSE__45__16__45__DIPHOSPHATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_GAP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DIHYDROXY__45__ACETONE__45__PHOSPHATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_F16BDEPHOS__45__RXN" name="fructose 1,6-bisphosphate 1-phosphatase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-14_005760) or (Ec-06_004200) or (Ec-17_003090) or (Ec-21_001790) or (Ec-04_004710) or (Ec-22_000360) or (Ec-12_004070)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: GLUCONEO-PWY , SUCSYN-PWY , P185-PWY , CALVIN-PWY , PWY-5484 , PWY66-399 , GLYCOLYSIS</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FRUCTOSE__45__16__45__DIPHOSPHATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_FRUCTOSE__45__6P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_FADSYN__45__RXN" name="FAD synthetase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_006670)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6168 , RIBOSYN2-PWY , PWY-6167 , PWY66-366</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FMN_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FAD_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_FARNESYLTRANSTRANSFERASE__45__RXN" name="Geranylgeranyl pyrophosphate synthetase, chloroplast precursor;" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_004320) or (Ec-16_004330)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7720 , PWY-7492 , PWY-5120 , PWY-7736 , PWY-6691 , PWY-7517 , PWY-7721 , PWY-6659</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_FARNESYL__45__PP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DELTA3__45__ISOPENTENYL__45__PP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GERANYLGERANYL__45__PP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_FATTY__45__ACID__45__SYNTHASE__45__RXN" name="FATTY-ACID-SYNTHASE-RXN" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_MALONYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACETYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Long__45__Chain__45__Fatty__45__Acids_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_FATTY__45__ACYL__45__COA__45__SYNTHASE__45__RXN" name="FATTY-ACYL-COA-SYNTHASE-RXN" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
            <p>SUBSYSTEM: PWY-5970</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_MALONYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACETYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Long__45__Chain__45__Acyl__45__CoAs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_FERREDOXIN__45____45__NITRITE__45__REDUCTASE__45__RXN" name="FERREDOXIN--NITRITE-REDUCTASE-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_002720)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY490-3 , PWY-381</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="8" constant="false"/>
          <speciesReference species="M_NITRITE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Reduced__45__ferredoxins_c" stoichiometry="6" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Oxidized__45__ferredoxins_c" stoichiometry="6" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_FESO3OXI__45__RXN" name="FESO3OXI-RXN" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
            <p>SUBSYSTEM: FESULFOX-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FE__43__3_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_SO3_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_SULFATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FE__43__2_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_FGAMSYN__45__RXN" name="FGAMSYN-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-11_004610)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-6122 , PWY-6277 , PWY-6121</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_5__45__P__45__RIBOSYL__45__N__45__FORMYLGLYCINEAMIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLN_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_5__45__PHOSPHORIBOSYL__45__N__45__FORMYLGLYCINEAMIDINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLT_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_FLAVONADPREDUCT__45__RXN" name="ferredoxin-NADP+ reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_002800)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Oxidized__45__flavodoxins_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Reduced__45__flavodoxins_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_FOLYLPOLYGLUTAMATESYNTH__45__RXN" name="tetrahydrofolylpolyglutamate synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-07_002300) or (Ec-01_004980)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-2161</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_THF__45__GLU__45__N_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLT_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_THF__45__GLU__45__N_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_FORMATETHFLIG__45__RXN" name="formate-tetrahydrofolate ligase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-25_001900) or (Ec-01_009540)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-3841 , CODH-PWY , PWY-2161 , PWY-1722 , PWY-2201</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_FORMATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_THF__45__GLU__45__N_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FORMYL__45__THF__45__GLU__45__N_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_FORMYLMETHIONINE__45__DEFORMYLASE__45__RXN" name="Formylmethionine deformylase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-24_001980)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_N__45__FORMYLMETHIONINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_FORMATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MET_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_FORMYLTHFDEFORMYL__45__RXN" name="FORMYLTHFDEFORMYL-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-2201 , P164-PWY , PWY-5497</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_FORMYL__45__THF__45__GLU__45__N_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FORMATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_THF__45__GLU__45__N_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_FORMYLTHFGLUSYNTH__45__RXN" name="tetrahydrofolylpolyglutamate synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-07_002300) or (Ec-01_004980)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-2161</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLT_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FORMYL__45__THF__45__GLU__45__N_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FORMYL__45__THF__45__GLU__45__N_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_FPPSYN__45__RXN" name="Prenyltransferase/squalene oxidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_004330) or (Ec-10_003020) or (Ec-07_006170)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5123 , PWY-7102 , PWY-6859 , PWY-7736 , PWY-7721</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_DELTA3__45__ISOPENTENYL__45__PP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GERANYL__45__PP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FARNESYL__45__PP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_FRUCTOKINASE__45__RXN" name="FRUCTOKINASE-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-18_002990)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-4101 , SUCROSEUTIL2-PWY , P122-PWY , PWY-3801 , PWY-6531 , PWY-621 , SUCUTIL-PWY , PWY-5384</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_BETA__45__D__45__FRUCTOSE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FRUCTOSE__45__6P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_FUCOKINASE__45__RXN" name="L-fucokinase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_008200)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__Fucopyranoses_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__488_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_FUMARATE__45__REDUCTASE__45__NADH__45__RXN" name="Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_006560)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SUC_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FUM_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_FUMHYDR__45__RXN" name="Fumarate lyase, N-terminal" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-23_003460) or (Ec-25_001360)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: P42-PWY , PWY66-398 , P108-PWY , FERMENTATION-PWY , PWY-6728 , PWY-5913 , P105-PWY , PWY-7384 , P23-PWY , PWY-7254 , TCA , PWY-5392 , PWY-6969 , PWY-561 , REDCITCYC , PWY-5690</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_MAL_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_FUM_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GALACTOKIN__45__RXN" name="galactokinase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-04_004180) or (Ec-04_000280)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY66-422 , PWY-6527 , PWY-3821 , PWY-6317</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ALPHA__45__D__45__GALACTOSE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GALACTOSE__45__1P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GALACTONOLACTONASE__45__RXN" name="D-galactono-1,4-lactonase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_002500) or (Ec-21_001990)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: GALDEG-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_D__45__GALACTONO__45__1__45__4__45__LACTONE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_D__45__GALACTONATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GALACTOSIDE__45__2__45__L__45__FUCOSYLTRANSFERASE__45__RXN" name="Bifunctional glycosyltransferase, family GT74 / family GT2" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_003470)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Lactotetraosylceramides_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GUANOSINE_DIPHOSPHATE_FUCOSE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_III2__45__a__45__Fucosyllactotetraosylceramides_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GALACTOSIDE__45__3__45__FUCOSYLTRANSFERASE__45__RXN" name="Alpha-(1,3)-fucosyltransferase, family GT10" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_005030)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7434</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_B__45__Gal__45__14__45__NacGlc__45__R_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GUANOSINE_DIPHOSPHATE_FUCOSE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__8594_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GDP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GALACTOSYLCERAMIDE__45__SULFOTRANSFERASE__45__RXN" name="galactosylceramide sulfotransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_002500) or (Ec-10_004010) or (Ec-07_000620) or (Ec-11_001430) or (Ec-08_002500) or (Ec-14_003510) or (Ec-12_003630) or (Ec-09_000360) or (Ec-08_002510) or (Ec-23_003770)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Cerebrosides_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PAPS_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_3__45__5__45__ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GALACTOSYLCERAMIDE__45__SULFATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GALACTURIDYLYLTRANS__45__RXN" name="Uridyltransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-00_010010)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6527 , PWY66-422 , PWY-6317</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GALACTOSE__45__1P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__12575_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__14553_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLC__45__1__45__P_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GAMMA__45__GLUTAMYLCYCLOTRANSFERASE__45__RXN" name="Glutamine cyclotransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_002460) or (Ec-04_004960)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-4041</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_5__45__L__45__GLUTAMYL__45__L__45__AMINO__45__ACID_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_L__45__Amino__45__Acids_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_5__45__OXOPROLINE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GAMMA__45__GLUTAMYLTRANSFERASE__45__RXN" name="Gamma-glutamyltranspeptidase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_006220)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Amino__45__Acids_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_5__45__L__45__GLUTAMYL__45__PEPTIDE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_5__45__L__45__GLUTAMYL__45__AMINO__45__ACID_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Peptides__45__holder_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GAPOXNPHOSPHN__45__RXN" name="Glyceraldehyde/Erythrose phosphate dehydrogenase family" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-08_000500) or (Ec-25_003550) or (Ec-19_003020) or (Ec-19_001850)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: P124-PWY , P122-PWY , GLUCONEO-PWY , SUCSYN-PWY , P185-PWY , ANAGLYCOLYSIS-PWY , PWY-1042 , PWY-5484 , PWY66-399 , PWY-7003 , GLYCOLYSIS , PWY-6901</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GAP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_DPG_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GCVMULTI__45__RXN" name="GCVMULTI-RXN" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-2201 , PWY-3841 , 1CMET2-PWY , PWY-181</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_THF__45__GLU__45__N_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLY_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_METHYLENE__45__THF__45__GLU__45__N_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GCVMULTI__45__RXN__45__GLY__47__THF__47__NAD__47____47__METHYLENE__45__THF__47__AMMONIUM__47__CARBON__45__DIOXIDE__47__NADH__46__56__46__" name="GCVMULTI-RXN-GLY/THF/NAD//METHYLENE-THF/AMMONIUM/CARBON-DIOXIDE/NADH.56." reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_THF_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLY_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_METHYLENE__45__THF_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GCVP__45__RXN" name="glycine dehydrogenase (decarboxylating)" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-23_004150) or (Ec-07_004110)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: GLYCINE-SYN2-PWY , GLYCLEAV-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLY_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTEIN__45__LIPOYLLYSINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMINOMETHYLDIHYDROLIPOYL__45__GCVH_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GCVT__45__RXN" name="aminomethyltransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-00_002470) or (Ec-07_004110) or (Ec-24_001010) or (Ec-20_004610)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: GLYCLEAV-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_THF__45__GLU__45__N_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMINOMETHYLDIHYDROLIPOYL__45__GCVH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DIHYDROLIPOYL__45__GCVH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_METHYLENE__45__THF__45__GLU__45__N_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GDP__45__MANNOSE__45__6__45__DEHYDROGENASE__45__RXN" name="NAD(P)-binding domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_004880) or (Ec-16_004740)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6073 , PWY-6082</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GDP__45__MANNOSE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="3" constant="false"/>
          <speciesReference species="M_CPD__45__1828_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GDPKIN__45__RXN" name="nucleoside diphosphate kinase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-04_001140) or (Ec-11_004330) or (Ec-22_003280) or (Ec-07_000140) or (Ec-26_003930) or (Ec-03_001380) or (Ec-11_005170)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PPGPPMET-PWY , PWY-7221</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GTP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GDPMANDEHYDRA__45__RXN" name="GDP-mannose 4,6-dehydratase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-28_003400) or (Ec-11_005510)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-66 , PWY-5740 , GDPRHAMSYN-PWY , PWY-7573 , PWY-5738 , PWY-5739</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GDP__45__MANNOSE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_GDP__45__4__45__DEHYDRO__45__6__45__DEOXY__45__D__45__MANNOSE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GDPPYPHOSKIN__45__RXN" name="GTP diphosphokinase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_008850)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PPGPPMET-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GUANOSINE__45__5DP__45__3DP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GDPREDUCT__45__RXN" name="Ribonucleoside-diphosphate reductase small chain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_000440) or (Ec-06_005120) or (Ec-17_003700) or (Ec-21_002920) or (Ec-11_002180) or (Ec-06_005570) or (Ec-11_002170)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7226 , PWY-7222</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Red__45__Thioredoxin_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GDP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DGDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Ox__45__Thioredoxin_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GLU6PDEHYDROG__45__RXN" name="Glucose-6-phosphate dehydrogenase, NAD-binding" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_007700)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: OXIDATIVEPENT-PWY , P122-PWY , GLYCOLYSIS-E-D , PWY-7268 , RUMP-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_D__45__glucopyranose__45__6__45__phosphate_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_D__45__6__45__P__45__GLUCONO__45__DELTA__45__LACTONE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GLUC1PURIDYLTRANS__45__RXN" name="UTP--glucose-1-phosphate uridylyltransferase family" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-05_002180) or (Ec-16_004100) or (Ec-03_002030) or (Ec-12_002300)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6527 , PWY-7343 , PWY-3801 , PWY-7238</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_UTP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLC__45__1__45__P_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__12575_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GLUCOKIN__45__RXN" name="glucokinase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_005030)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: P124-PWY , P122-PWY , PWY-7385 , PWY-5514 , PWY-2723 , PWY-5661 , GLUCOSE1PMETAB-PWY , TREDEGLOW-PWY , ANAGLYCOLYSIS-PWY , GLYCOCAT-PWY , PWY0-1182 , PWY-7238 , PWY-621 , PWY-2722</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Glucopyranose_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_D__45__glucopyranose__45__6__45__phosphate_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GLUCONOLACT__45__RXN" name="Lactonase domain-containing protein" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_002500) or (Ec-21_001990)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-2221 , GLUCOSE1PMETAB-PWY , DHGLUCONATE-PYR-CAT-PWY , NPGLUCAT-PWY , PWY-5530 , PWY-7165</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLC__45__D__45__LACTONE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLUCONATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GLUCOSAMINEPNACETYLTRANS__45__RXN" name="GLUCOSAMINEPNACETYLTRANS-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: UDPNACETYLGALSYN-PWY , PWY-5514</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_D__45__GLUCOSAMINE__45__6__45__P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACETYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_N__45__ACETYL__45__D__45__GLUCOSAMINE__45__6__45__P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GLURS__45__RXN" name="glutamate-tRNA ligase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_008480)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: TRNA-CHARGING-PWY , PWY-5188</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GLT__45__tRNAs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLT_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Charged__45__GLT__45__tRNAs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GLUTAMATE__45__DEHYDROGENASE__45__RXN" name="Glutamate dehydrogenase (NAD-dependent)" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_008240) or (Ec-12_008040) or (Ec-06_001980)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: GLUTAMATE-DEG1-PWY , PWY-6728 , P162-PWY , PWY-5022 , PWY-7126 , ALACAT2-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLT_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GLUTAMATE__45__N__45__ACETYLTRANSFERASE__45__RXN" name="Arginine biosynthesis bifunctional protein ArgJ" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-07_005560) or (Ec-06_003690)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: ARGSYNBSUB-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GLT_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_N__45__ALPHA__45__ACETYLORNITHINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ACETYL__45__GLU_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__ORNITHINE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GLUTAMATE__45__SYNTHASE__45__FERREDOXIN__45__RXN" name="Glutamate synthase (ferredoxin-dependent)" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_004630) or (Ec-27_004970) or (Ec-00_000720)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-4341 , PWY-6964 , PWY-6549</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_GLN_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Reduced__45__ferredoxins_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Oxidized__45__ferredoxins_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_GLT_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GLUTAMATE__45__SYNTHASE__45__NADH__45__RXN" name="GLUTAMATE-SYNTHASE-NADH-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_004630)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: GLUGLNSYN-PWY , PWY-6963</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLN_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLT_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GLUTAMATESYN__45__RXN" name="GLUTAMATESYN-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_004630)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: GLUTSYN-PWY , GLUTAMINEFUM-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GLN_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_GLT_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GLUTAMIDOTRANS__45__RXN" name="imidazoleglycerol-phosphate synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-05_003160)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: HISTSYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GLN_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PHOSPHORIBULOSYL__45__FORMIMINO__45__AICAR__45__P_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLT_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_D__45__ERYTHRO__45__IMIDAZOLE__45__GLYCEROL__45__P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AICAR_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GLUTAMIN__45__RXN" name="asparagine synthase (glutamine-hydrolyzing)" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_004970) or (Ec-15_004750) or (Ec-00_000720) or (Ec-15_003670) or (Ec-11_002360) or (Ec-10_006110) or (Ec-13_002710) or (Ec-28_000990) or (Ec-06_001280) or (Ec-00_000570)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: GLUTAMINDEG-PWY , CITRULBIO-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLN_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_GLT_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GLUTAMINE__45____45__TRNA__45__LIGASE__45__RXN" name="glutaminyl-tRNA synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_000780) or (Ec-17_003970)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: TRNA-CHARGING-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GLN__45__tRNAs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLN_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Charged__45__GLN__45__tRNAs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GLUTAMINESYN__45__RXN" name="Glutamine synthetase, beta-Grasp" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-15_004110) or (Ec-15_004120) or (Ec-21_003610) or (Ec-09_000640)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6549 , PWY-6964 , GLNSYN-PWY , PWY-6963 , PWY490-3 , PWY-5675 , PWY-381</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLT_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLN_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GLUTATHIONE__45__PEROXIDASE__45__RXN" name="Thioredoxin-like fold" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-14_004400) or (Ec-11_004010) or (Ec-09_004680) or (Ec-05_005460) or (Ec-05_005450) or (Ec-08_001740) or (Ec-00_006580)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-4081 , DETOX1-PWY-1</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GLUTATHIONE_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_HYDROGEN__45__PEROXIDE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_OXIDIZED__45__GLUTATHIONE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GLUTATHIONE__45__REDUCT__45__NADPH__45__RXN" name="Pyridine nucleotide-disulphide oxidoreductase, NAD-binding domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-00_010830) or (Ec-24_001330)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: GLUT-REDOX-PWY , PWY-4081</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXIDIZED__45__GLUTATHIONE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_GLUTATHIONE_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GLUTATHIONE__45__SYN__45__RXN" name="Glutathione synthase, alpha-helical, eukaryotic" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-18_004530)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: GLUTATHIONESYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_L__45__GAMMA__45__GLUTAMYLCYSTEINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLY_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_GLUTATHIONE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GLUTCYSLIG__45__RXN" name="Glutamate-cysteine ligase catalytic subunit" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-17_001900) or (Ec-05_001730)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: GLUTATHIONESYN-PWY , PWY-6840 , PWY-7255</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CYS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLT_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__GAMMA__45__GLUTAMYLCYSTEINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GLUTDEHYD__45__RXN" name="Glutamate dehydrogenase 1 (NADP-dependent)" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_008040) or (Ec-06_008240)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY490-3 , PWY-5913 , PWY-5675 , GLUTSYNIII-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GLT_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GLUTKIN__45__RXN" name="Aspartate/glutamate/uridylate kinase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-24_000610) or (Ec-27_003730) or (Ec-07_007490)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: CITRULBIO-PWY , ARGININE-SYN4-PWY , PWY-6922 , PROSYN-PWY , PWY-3341</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GLT_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_L__45__GLUTAMATE__45__5__45__P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GLUTRNAREDUCT__45__RXN" name="Glutamyl-tRNA Reductase, chloroplast precursor" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_000430)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5188</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Charged__45__GLT__45__tRNAs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_GLT__45__tRNAs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLUTAMATE__45__1__45__SEMIALDEHYDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GLUTSEMIALDEHYDROG__45__RXN" name="GLUTSEMIALDEHYDROG-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-07_007490)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: CITRULBIO-PWY , ARGININE-SYN4-PWY , PWY-6922 , PROSYN-PWY , PWY-3341</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__GLUTAMATE__45__5__45__P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__GLUTAMATE_GAMMA__45__SEMIALDEHYDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GLY3KIN__45__RXN" name="Glycerate 3-kinase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-11_001840)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-181</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GLYCERATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_G3P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GLYC3PDEHYDROGBIOSYN__45__RXN" name="glycerol-3-phosphate dehydrogenase [NAD+]" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_006990) or (Ec-19_004200) or (Ec-19_001930)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5667 , PWY0-1319 , PWY-5981</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DIHYDROXY__45__ACETONE__45__PHOSPHATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH__45__P__45__OR__45__NOP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NAD__45__P__45__OR__45__NOP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLYCEROL__45__3P_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GLYCEROL__45__DEHYDROGENASE__45__NADP__43____45__RXN" name="GLYCEROL-DEHYDROGENASE-NADP+-RXN" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GLYCEROL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_GLYCERALD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GLYCEROL__45__KIN__45__RXN" name="Carbohydrate kinase, FGGY, C-terminal" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_004370)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-4261</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLYCEROL_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_GLYCEROL__45__3P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GLYCERONE__45__KINASE__45__RXN" name="glycerone kinase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-18_002130)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6131 , P185-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_DIHYDROXYACETONE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DIHYDROXY__45__ACETONE__45__PHOSPHATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GLYCINE__45____45__TRNA__45__LIGASE__45__RXN" name="Glycyl-tRNA synthetase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-07_006790) or (Ec-07_006780) or (Ec-14_006280)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: TRNA-CHARGING-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLY_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLY__45__tRNAs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Charged__45__GLY__45__tRNAs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GLYCOLALD__45__DEHYDROG__45__RXN" name="GLYCOLALD-DEHYDROG-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
            <p>SUBSYSTEM: DARABCATK12-PWY , PWY0-1280</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLYCOLALDEHYDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_GLYCOLLATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GLYCOLATE__45__REDUCTASE__45__RXN" name="GLYCOLATE-REDUCTASE-RXN" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
            <p>SUBSYSTEM: PWY-7294 , PWY-7295</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLYCOLLATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLYOX_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GLYCPDIESTER__45__RXN" name="glycerophosphodiester phosphodiesterase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-23_002720) or (Ec-23_002410)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6952</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Glycerophosphodiesters_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLYCEROL__45__3P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Alcohols_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GLYOHMETRANS__45__RXN" name="Serine hydroxymethyltransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-14_004260) or (Ec-24_002640)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-3841 , PWY-1622 , PWY-3661 , GLYSYN-PWY , PWY-2161 , 1CMET2-PWY , PWY-181 , PWY-5497 , PWY-2201 , PWY-3661-1</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_SER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_THF__45__GLU__45__N_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_METHYLENE__45__THF__45__GLU__45__N_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLY_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GLYOHMETRANS__45__RXN__45__SER__47__THF__47____47__GLY__47__METHYLENE__45__THF__47__WATER__46__33__46__" name="GLYOHMETRANS-RXN-SER/THF//GLY/METHYLENE-THF/WATER.33." reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_THF_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLY_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_METHYLENE__45__THF_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GLYOXI__45__RXN" name="lactoylglutathione lyase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-09_000050)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5386</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_S__45__LACTOYL__45__GLUTATHIONE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_METHYL__45__GLYOXAL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLUTATHIONE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GLYOXII__45__RXN" name="hydroxyacylglutathione hydrolase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_010680) or (Ec-04_001020)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5386</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_S__45__LACTOYL__45__GLUTATHIONE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLUTATHIONE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_D__45__LACTATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GLYOXIII__45__RXN" name="Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_005420) or (Ec-02_005270) or (Ec-02_005260) or (Ec-01_004500) or (Ec-02_005280) or (Ec-23_001400) or (Ec-18_000790) or (Ec-19_002580) or (Ec-11_004780) or (Ec-06_008210) or (Ec-27_005140) or (Ec-23_003630) or (Ec-14_004210) or (Ec-24_000860) or (Ec-06_002530)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_METHYL__45__GLYOXAL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_D__45__LACTATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GLYOXYLATE__45__REDUCTASE__45__NADP__43____45__RXN" name="GLYOXYLATE-REDUCTASE-NADP+-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLYOX_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_GLYCOLLATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GLYRIBONUCSYN__45__RXN" name="phosphoribosylamine-glycine ligase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_005490)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6122 , PWY-6277 , PWY-6121</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLY_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_5__45__P__45__BETA__45__D__45__RIBOSYL__45__AMINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_5__45__PHOSPHO__45__RIBOSYL__45__GLYCINEAMIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GMP__45__REDUCT__45__RXN" name="IMP dehydrogenase/GMP reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_000030)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_GMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_IMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GMP__45__SYN__45__GLUT__45__RXN" name="GMP synthase (glutamine-hydrolyzing)" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-13_002710)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7221</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_XANTHOSINE__45__5__45__PHOSPHATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLN_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_GLT_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GMP__45__SYN__45__NH3__45__RXN" name="GMP synthase (glutamine-hydrolyzing)" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-13_002710)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_XANTHOSINE__45__5__45__PHOSPHATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_GMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GPH__45__RXN" name="2-phosphoglycolate phosphatase, eukaryotic" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_008080) or (Ec-28_001790)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-181</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__67_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLYCOLLATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GPPSYN__45__RXN" name="prenyltransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_003280) or (Ec-18_000990) or (Ec-10_003020) or (Ec-17_001240) or (Ec-16_004330) or (Ec-08_002270) or (Ec-25_002110) or (Ec-21_000990) or (Ec-07_006170) or (Ec-24_003910) or (Ec-00_007350) or (Ec-14_006550)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7141 , PWY-5123 , PWY-7659 , PWY-7102 , PWY-6859 , PWY-6383 , PWY-7182 , PWY-7736 , PWY-7709 , PWY-5122 , PWY-7410</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_DELTA3__45__ISOPENTENYL__45__PP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__4211_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GERANYL__45__PP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GSAAMINOTRANS__45__RXN" name="glutamate-1-semialdehyde 2,1-aminomutase, putative chloroplast precursor" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_008690)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5188</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GLUTAMATE__45__1__45__SEMIALDEHYDE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_5__45__AMINO__45__LEVULINATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GSADENYLATION__45__RXN" name="molybdopterin hydrolase / adenylyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_003590)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Glutamine__45__synthetase__45__Tyr_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Glutamine__45__synthetase__45__adenylyl__45__Tyr_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GSHTRAN__45__RXN" name="Thioredoxin-like fold" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_000400) or (Ec-27_000390) or (Ec-16_001680) or (Ec-10_001330) or (Ec-13_000340) or (Ec-06_002520) or (Ec-18_001510) or (Ec-13_002370) or (Ec-09_003670) or (Ec-24_001030) or (Ec-00_008890) or (Ec-06_008030) or (Ec-13_002360) or (Ec-00_000320) or (Ec-20_001950) or (Ec-00_008360) or (Ec-00_008870) or (Ec-00_008370) or (Ec-00_008380) or (Ec-11_002590)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6842 , PWY-4061</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GLUTATHIONE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_RX_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_HX_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_S__45__Substituted__45__Glutathione_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GST__45__RXN" name="Thioredoxin-like fold" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_008030) or (Ec-13_002360) or (Ec-00_008890) or (Ec-13_000340) or (Ec-13_002370) or (Ec-00_008870) or (Ec-06_002520) or (Ec-09_003670) or (Ec-18_001510) or (Ec-27_000400) or (Ec-24_001030) or (Ec-27_000390) or (Ec-00_000320) or (Ec-00_008380) or (Ec-20_001950) or (Ec-00_008360) or (Ec-00_008370) or (Ec-11_002590)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GLUTATHIONE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_1__45__CHLORO__45__24__45__DINITROBENZENE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CL__45___c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_S__45__24__45__DINITROPHENYLGLUTATHIONE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GTP__45__CYCLOHYDRO__45__I__45__RXN" name="GTP cyclohydrolase I" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_007000)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6983 , PWY-6703 , PWY-5663 , PWY0-1433 , PWY-6147 , PWY-5664 , PWY-7442</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GTP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DIHYDRONEOPTERIN__45__P3_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FORMATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GTP__45__CYCLOHYDRO__45__II__45__RXN" name="GTP cyclohydrolase II" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_005710) or (Ec-27_004040)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6168 , PWY-7539 , RIBOSYN2-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="3" constant="false"/>
          <speciesReference species="M_GTP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_FORMATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_DIAMINO__45__OH__45__PHOSPHORIBOSYLAMINO__45__PYR_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GTPPYPHOSKIN__45__RXN" name="GTP diphosphokinase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_008850)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PPGPPMET-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GTP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_GDP__45__TP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GUANIDINOBUTANAMIDE__45__NH3__45__RXN" name="Amidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_009020) or (Ec-02_005910)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: ARGDEG-V-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_4__45__GUANIDO__45__BUTYRAMIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__592_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GUANIDINOBUTYRASE__45__RXN" name="GUANIDINOBUTYRASE-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7523 , ARGDEG-V-PWY , ARGDEG-IV-PWY , PWY-5742</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__592_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_4__45__AMINO__45__BUTYRATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_UREA_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GUANOSINE__45__DIPHOSPHATASE__45__RXN" name="Apyrase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_003360) or (Ec-02_001970)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_GMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GUANPRIBOSYLTRAN__45__RXN" name="hypoxanthine phosphoribosyltransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_006480)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6620 , PWY-6599</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PRPP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GUANINE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GUANYL__45__KIN__45__RXN" name="guanylate kinase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-11_000270) or (Ec-14_001590)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7221</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_GDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_GUANYLCYC__45__RXN" name="Adenylyl cyclase class-3/4/guanylyl cyclase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_005510) or (Ec-02_004910) or (Ec-00_002690) or (Ec-10_000090) or (Ec-10_005500) or (Ec-23_003180)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GTP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CGMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_H2NEOPTERINALDOL__45__RXN" name="H2NEOPTERINALDOL-RXN" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
            <p>SUBSYSTEM: PWY-6797 , PWY-6147 , PWY-7539 , PWY-6148</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_DIHYDRO__45__NEO__45__PTERIN_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMINO__45__OH__45__HYDROXYMETHYL__45__DIHYDROPTERIDINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLYCOLALDEHYDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_H2NEOPTERINP3PYROPHOSPHOHYDRO__45__RXN" name="H2NEOPTERINP3PYROPHOSPHOHYDRO-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-04_000920) or (Ec-09_003740) or (Ec-14_006830) or (Ec-12_006470) or (Ec-19_003700) or (Ec-06_009970) or (Ec-19_001450) or (Ec-10_002470) or (Ec-15_000350) or (Ec-24_003120) or (Ec-19_001310) or (Ec-15_001630) or (Ec-06_010060) or (Ec-19_001540) or (Ec-12_001230) or (Ec-10_002170) or (Ec-15_000660) or (Ec-14_006970) or (Ec-00_002040) or (Ec-01_009100) or (Ec-01_000090) or (Ec-06_007890) or (Ec-22_000120) or (Ec-05_006830) or (Ec-09_003200) or (Ec-18_000740) or (Ec-15_003300)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-6147</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DIHYDRONEOPTERIN__45__P3_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_DIHYDRONEOPTERIN__45__P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_H2PTERIDINEPYROPHOSPHOKIN__45__RXN" name="2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_000230)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6797 , PWY-6147 , PWY-7539</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMINO__45__OH__45__HYDROXYMETHYL__45__DIHYDROPTERIDINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DIHYDROPTERIN__45__CH2OH__45__PP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_H2PTEROATESYNTH__45__RXN" name="H2PTEROATESYNTH-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_000230)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-6614</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_DIHYDROPTERIN__45__CH2OH__45__PP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_P__45__AMINO__45__BENZOATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_7__45__8__45__DIHYDROPTEROATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_HEMN__45__RXN" name="Radical SAM" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_002590) or (Ec-20_000950) or (Ec-14_004300) or (Ec-26_001240) or (Ec-19_002210)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5531 , HEMESYN2-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_COPROPORPHYRINOGEN_III_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_S__45__ADENOSYLMETHIONINE_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTOPORPHYRINOGEN_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MET_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_CH33ADO_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_HEXOKINASE__45__RXN" name="Glucokinase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_005030)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_D__45__Hexoses_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_D__45__HEXOSE__45__6__45__PHOSPHATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_HISTALDEHYD__45__RXN" name="Histidinol dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-20_001280) or (Ec-16_001760)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: HISTSYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HISTIDINAL_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_HIS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_HISTAMINOTRANS__45__RXN" name="Pyridoxal phosphate-dependent transferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_000850)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: HISTSYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GLT_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_IMIDAZOLE__45__ACETOL__45__P_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_L__45__HISTIDINOL__45__P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_HISTCYCLOHYD__45__RXN" name="HISTCYCLOHYD-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_001690)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: HISTSYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PHOSPHORIBOSYL__45__AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PHOSPHORIBOSYL__45__FORMIMINO__45__AICAR__45__P_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_HISTIDINE__45____45__TRNA__45__LIGASE__45__RXN" name="Anticodon-binding" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-11_004790)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: TRNA-CHARGING-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_HIS__45__tRNAs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HIS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Charged__45__HIS__45__tRNAs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_HISTIDINE__45__AMMONIA__45__LYASE__45__RXN" name="Aromatic amino acid lyase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-14_006630)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5028 , PWY-5030 , HISDEG-PWY , HISHP-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_HIS_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_UROCANATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_HISTIDINE__45__DECARBOXYLASE__45__RXN" name="Histidine decarboxylase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_001570)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6173</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HIS_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HISTAMINE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_HISTIDPHOS__45__RXN" name="HISTIDPHOS-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
            <p>SUBSYSTEM: HISTSYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_L__45__HISTIDINOL__45__P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HISTIDINOL_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_HISTIDPHOS__45__RXN__91__CCO__45__CYTOSOL__93____45__L__45__HISTIDINOL__45__P__47__WATER__47____47__HISTIDINOL__47__Pi__46__49__46__" name="HISTIDPHOS-RXN[CCO-CYTOSOL]-L-HISTIDINOL-P/WATER//HISTIDINOL/Pi.49." reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__HISTIDINOL__45__P_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_HISTIDINOL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_HISTOLDEHYD__45__RXN" name="Histidinol dehydrogenase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-20_001280) or (Ec-16_001760)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: HISTSYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HISTIDINOL_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_HISTIDINAL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_HISTONE__45__ACETYLTRANSFERASE__45__RXN" name="histone acetyltransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-08_005530) or (Ec-11_006100) or (Ec-03_000930) or (Ec-16_003590) or (Ec-11_001290) or (Ec-18_002500) or (Ec-18_002510) or (Ec-01_007540) or (Ec-05_003120)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ACETYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Histone__45__L__45__lysine_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Histone__45__Acetyl__45__Lysine_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_HISTONE__45__LYSINE__45__N__45__METHYLTRANSFERASE__45__RXN" name="histone-lysine N-methyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_002870) or (Ec-24_003490) or (Ec-16_000810) or (Ec-25_002980) or (Ec-10_005980) or (Ec-14_005310) or (Ec-12_004580) or (Ec-14_005610) or (Ec-27_005100) or (Ec-24_003550) or (Ec-22_000420)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Histone__45__L__45__lysine_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_S__45__ADENOSYLMETHIONINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADENOSYL__45__HOMO__45__CYS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__8579_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_HISTPRATPHYD__45__RXN" name="phosphoribosyl-ATP diphosphatase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_001690)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: HISTSYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PHOSPHORIBOSYL__45__ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_PHOSPHORIBOSYL__45__AMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_HOLO__45__ACP__45__SYNTH__45__RXN" name="holo-[acyl-carrier-protein] synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_004620) or (Ec-01_000130)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6012 , PWY-6012-1</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_apo__45__ACP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_3__45__5__45__ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_HOLOCYTOCHROME__45__C__45__SYNTHASE__45__RXN" name="holocytochrome-c synthase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-17_000530) or (Ec-10_003030)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Cytochromes__45__c_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Apocytochromes__45__c_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HEME_C_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_HOMOACONITATE__45__HYDRATASE__45__RXN" name="Homoaconitate hydratase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-13_001950)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: P241-PWY , PWY-3081 , LYSINE-AMINOAD-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HOMO__45__CIS__45__ACONITATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_HOMO__45__I__45__CIT_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_HOMOCYSMET__45__RXN" name="5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-28_003190) or (Ec-06_000970)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: HSERMETANA-PWY , PWY-702 , HOMOSER-METSYN-PWY , PWY-6151 , PWY-5041</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__1302_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HOMO__45__CYS_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__1301_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MET_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_HOMOCYSMETB12__45__RXN" name="Methionine synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_000980) or (Ec-06_000970)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-3841 , HSERMETANA-PWY , HOMOSER-METSYN-PWY , 1CMET2-PWY , PWY-2201 , ADENOSYLHOMOCYSCAT-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_HOMO__45__CYS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_5__45__METHYL__45__THF__45__GLU__45__N_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_THF__45__GLU__45__N_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MET_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_HOMOCYSMETB12__45__RXN__45__HOMO__45__CYS__47__5__45__METHYL__45__THF__47____47__MET__47__THF__46__31__46__" name="HOMOCYSMETB12-RXN-HOMO-CYS/5-METHYL-THF//MET/THF.31." reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_5__45__METHYL__45__THF_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HOMO__45__CYS_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_MET_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_THF_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_HOMOCYSTEINE__45__S__45__METHYLTRANSFERASE__45__RXN" name="S-adenosyl-L-methionine:L-homocysteine S-methyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_000980) or (Ec-11_005000)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-702</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_S__45__ADENOSYLMETHIONINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HOMO__45__CYS_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MET_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADENOSYL__45__HOMO__45__CYS_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_HOMOGENTISATE__45__12__45__DIOXYGENASE__45__RXN" name="homogentisate 1,2-dioxygenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-17_003830)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: TYRFUMCAT-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_HOMOGENTISATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_4__45__MALEYL__45__ACETOACETATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_HOMOSERDEAM__45__RXN" name="Pyridoxal phosphate-dependent transferase, major region, subdomain 1" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_003100)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_HOMO__45__SER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_2__45__OXOBUTANOATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_HOMOSERDEHYDROG__45__RXN" name="ACT domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-11_000830) or (Ec-11_004120) or (Ec-01_005000)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: HOMOSERSYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_L__45__ASPARTATE__45__SEMIALDEHYDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH__45__P__45__OR__45__NOP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NAD__45__P__45__OR__45__NOP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HOMO__45__SER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_HOMOSERKIN__45__RXN" name="homoserine kinase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-11_006270)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-702 , HOMOSER-THRESYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HOMO__45__SER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_O__45__PHOSPHO__45__L__45__HOMOSERINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_HOMSUCTRAN__45__RXN" name="HOMSUCTRAN-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
            <p>SUBSYSTEM: HOMOSER-METSYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_HOMO__45__SER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SUC__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_O__45__SUCCINYL__45__L__45__HOMOSERINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_HYDROG__45__RXN" name="ferredoxin hydrogenase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-22_001020) or (Ec-24_003110)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: GLUDEG-II-PWY , PWY-6759 , PWY4LZ-257 , PWY-6785 , PWY-6780</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_HYDROGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Oxidized__45__ferredoxins_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Reduced__45__ferredoxins_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_HYDROXYMETHYLGLUTARYL__45__COA__45__LYASE__45__RXN" name="Hydroxymethylglutaryl-CoA lyase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_006120)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY66-367 , LEU-DEG2-PWY , PWY-5074</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_3__45__HYDROXY__45__3__45__METHYL__45__GLUTARYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ACETYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__KETOBUTYRATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_HYDROXYMETHYLGLUTARYL__45__COA__45__SYNTHASE__45__RXN" name="Thiolase-like, subgroup" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_004360) or (Ec-19_002030)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7391 , PWY-922 , PWY-7571 , PWY66-367 , PWY-7524 , PWY-6174</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACETYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACETOACETYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_3__45__HYDROXY__45__3__45__METHYL__45__GLUTARYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_HYPOXANPRIBOSYLTRAN__45__RXN" name="hypoxanthine phosphoribosyltransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_006480)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6610 , PWY-6609</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_IMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PRPP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HYPOXANTHINE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_IGPSYN__45__RXN" name="Aldolase-type TIM barrel" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_003850) or (Ec-08_003030) or (Ec-27_004020) or (Ec-11_002820) or (Ec-08_003020)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: TRPSYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CARBOXYPHENYLAMINO__45__DEOXYRIBULOSE__45__P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_INDOLE__45__3__45__GLYCEROL__45__P_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_IMIDPHOSDEHYD__45__RXN" name="HAD hydrolase, subfamily IA" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_005110)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: HISTSYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_D__45__ERYTHRO__45__IMIDAZOLE__45__GLYCEROL__45__P_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_IMIDAZOLE__45__ACETOL__45__P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_IMP__45__DEHYDROG__45__RXN" name="IMP dehydrogenase/GMP reductase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_000030) or (Ec-24_002410)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6596 , PWY-5695 , PWY-7221</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_IMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_XANTHOSINE__45__5__45__PHOSPHATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_IMPCYCLOHYDROLASE__45__RXN" name="IMP cyclohydrolase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-11_005390)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7234 , PWY-6124 , PWY-6123</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_IMP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PHOSPHORIBOSYL__45__FORMAMIDO__45__CARBOXAMIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_INDOLE__45__23__45__DIOXYGENASE__45__RXN" name="Indoleamine 2,3-dioxygenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-20_001720)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7430</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_INDOLE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__248_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_INOPHOSPHOR__45__RXN" name="INOPHOSPHOR-RXN" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY0-1296 , SALVADEHYPOX-PWY , PWY-6609</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_INOSINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_HYPOXANTHINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_RIBOSE__45__1P_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_INORGPYROPHOSPHAT__45__RXN" name="inorganic diphosphatase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_004120) or (Ec-04_003260) or (Ec-28_000170) or (Ec-12_002140) or (Ec-18_000740) or (Ec-02_000870) or (Ec-26_005670) or (Ec-10_002590) or (Ec-01_011640) or (Ec-14_005330) or (Ec-24_002020)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_IPPISOM__45__RXN" name="isopentenyl-diphosphate delta-isomerase type 1" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-11_001030) or (Ec-18_002690)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7560 , PWY-7391 , NONMEVIPP-PWY , PWY-5123 , PWY-7102 , PWY-922 , PWY-6383 , PWY-6859 , PWY-7524 , PWY-6174</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_DELTA3__45__ISOPENTENYL__45__PP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__4211_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ISOCHORSYN__45__RXN" name="Enolase C-terminal domain-like" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-05_002520)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5901 , PWY-5837 , PWY-6406</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CHORISMATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ISOCHORISMATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ISOCIT__45__CLEAV__45__RXN" name="isocitrate lyase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_007550)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: GLYOXYLATE-BYPASS , P105-PWY , PWY-6969</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_THREO__45__DS__45__ISO__45__CITRATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_SUC_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLYOX_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ISOCITDEH__45__RXN" name="isocitrate dehydrogenase (NADP+)" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-11_003080)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6549 , PWY-7124 , FERMENTATION-PWY , PWY-6728 , P23-PWY , P105-PWY , PWY-5913 , PWY-7254 , TCA , PWY-6969 , PWY-7268 , REDCITCYC</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_THREO__45__DS__45__ISO__45__CITRATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ISOLEUCINE__45____45__TRNA__45__LIGASE__45__RXN" name="Isoleucyl-tRNA Synthetase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_008740) or (Ec-12_001710)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: TRNA-CHARGING-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ILE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ILE__45__tRNAs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Charged__45__ILE__45__tRNAs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ISOVALERYLCOA__45__DHLIPOAMIDE__45__RXN" name="dihydrolipoyllysine-residue (3-methylbutanoyl)transferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_BCAA__45__dehydrogenase__45__DH__45__lipoyl_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ISOVALERYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_BCAA__45__dehydrogenase__45__3MB__45__DH__45__lipoyl_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ISPH2__45__RXN" name="4-hydroxy-3-methylbut-2-enyl diphosphate reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_002680)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7560 , NONMEVIPP-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_Reduced__45__ferredoxins_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_HYDROXY__45__METHYL__45__BUTENYL__45__DIP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Oxidized__45__ferredoxins_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_DELTA3__45__ISOPENTENYL__45__PP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_KDPGALDOL__45__RXN" name="KDPG/KHG aldolase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_004070)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-2221 , PWY-7562 , ENTNER-DOUDOROFF-PWY , PWY-7310 , PWY-6507 , GALACTUROCAT-PWY , PWY-7242</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_2__45__KETO__45__3__45__DEOXY__45__6__45__P__45__GLUCONATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_GAP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PYRUVATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_KETOISOCAPROATE__45__RXN" name="4-methyl-2-oxopentanoate dehydrogenase (lipoamide)" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_006360)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_BCAA__45__dehydrogenase__45__lipoyl_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2K__45__4CH3__45__PENTANOATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_BCAA__45__dehydrogenase__45__3MB__45__DH__45__lipoyl_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_KETOLACTOSE__45__RXN" name="Beta-galactosidase, family GH2" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_007000) or (Ec-06_001410)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: LACTOSEUTIL-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_3__45__KETOLACTOSE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__1242_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Glucopyranose_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_KYNURENINE__45__3__45__MONOOXYGENASE__45__RXN" name="Monooxygenase, FAD-binding" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_002430) or (Ec-28_001680) or (Ec-26_001830)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7717 , PWY-5651 , PWY-7765 , PWY-6309</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__14736_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__HYDROXY__45__L__45__KYNURENINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_L__45__AMINO__45__ACID__45__DEHYDROGENASE__45__RXN__45__TYR__47__NAD__47__WATER__47____47__P__45__HYDROXY__45__PHENYLPYRUVATE__47__AMMONIUM__47__NADH__47__PROTON__46__61__46__" name="L-AMINO-ACID-DEHYDROGENASE-RXN-TYR/NAD/WATER//P-HYDROXY-PHENYLPYRUVATE/AMMONIUM/NADH/PROTON.61." reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_TYR_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_P__45__HYDROXY__45__PHENYLPYRUVATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_L__45__ASPARTATE__45__OXID__45__RXN" name="Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-05_003640)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PYRIDNUCSYN-PWY , PWY-5316 , PWY-7342</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_L__45__ASPARTATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_IMINOASPARTATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HYDROGEN__45__PEROXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_L__45__GLN__45__FRUCT__45__6__45__P__45__AMINOTRANS__45__RXN" name="glutamine-fructose-6-phosphate transaminase (isomerizing)" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-22_000810)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: UDPNAGSYN-PWY , UDPNACETYLGALSYN-PWY , PWY-6749</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GLN_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FRUCTOSE__45__6P_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_GLT_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_D__45__GLUCOSAMINE__45__6__45__P_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_L__45__IDITOL__45__2__45__DEHYDROGENASE__45__RXN" name="GroES (chaperonin 10)-like" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-18_002860)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__369_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__15616_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_L__45__LACTATE__45__DEHYDROGENASE__45__RXN" name="L-lactate dehydrogenase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_006780)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5481 , P122-PWY , PWY-6901 , P124-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_L__45__LACTATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PYRUVATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_LACTOSE__45__SYNTHASE__45__RXN" name="Beta-1,4-galactosyltransferase, family GT7" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_003790)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__14553_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Glucopyranose_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_UDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__15972_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_LCYSDESULF__45__RXN" name="Pyridoxal phosphate-dependent transferase, major region, subdomain 1" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_003100)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CYS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PYRUVATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HS_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_LEUCINE__45____45__TRNA__45__LIGASE__45__RXN" name="Leucyl-tRNA synthetase, class Ia, archaeal/eukaryotic cytosolic" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_001400) or (Ec-06_008730)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: TRNA-CHARGING-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_LEU_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_LEU__45__tRNAs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Charged__45__LEU__45__tRNAs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_LEUKOTRIENE__45__A4__45__HYDROLASE__45__RXN" name="Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_001510) or (Ec-05_005680)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY66-375</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__8892_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_6Z8E10E14Z__45__5S12R__45__512__45__DIHYDROXYI_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_LINOLENOYL__45__RXN" name="long chain acyl-coA synthetase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_003710) or (Ec-12_008720) or (Ec-01_001560) or (Ec-02_006430)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7049 , PWY-7724</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_LINOLENIC_ACID_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_LINOLENOYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_LINOLEOYL__45__RXN" name="LINOLEOYL-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
            <p>SUBSYSTEM: PWY-6917</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__18_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_LINOLEIC_ACID_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_LONG__45__CHAIN__45__FATTY__45__ACYL__45__COA__45__REDUCTASE__45__RXN" name="acyl-CoA dehydrogenase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-08_006390) or (Ec-16_004260) or (Ec-14_001600) or (Ec-03_003490) or (Ec-06_008910) or (Ec-21_001100)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Long__45__Chain__45__Aldehydes_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Long__45__Chain__45__Acyl__45__CoAs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_LUMAZINESYN__45__RXN" name="6,7-dimethyl-8-ribityllumazine synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_002140)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6168 , PWY-6167 , RIBOSYN2-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_DIHYDROXY__45__BUTANONE__45__P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMINO__45__RIBOSYLAMINO__45__1H__45__3H__45__PYR__45__DIONE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_DIMETHYL__45__D__45__RIBITYL__45__LUMAZINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_LYSINE__45____45__TRNA__45__LIGASE__45__RXN" name="Lysyl-tRNA Synthetase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_005790) or (Ec-19_000900)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: TRNA-CHARGING-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_LYS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_LYS__45__tRNAs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Charged__45__LYS__45__tRNAs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_LYSOPHOSPHOLIPASE__45__RXN" name="Acyl transferase/acyl hydrolase/lysophospholipase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_006930) or (Ec-23_002490) or (Ec-26_002630) or (Ec-24_003890) or (Ec-27_004350) or (Ec-04_000440)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__Lysophosphatidylcholines_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_L__45__1__45__GLYCERO__45__PHOSPHORYLCHOLINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Carboxylates_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_MALATE__45__DEH__45__RXN" name="Lactate/malate dehydrogenase, C-terminal" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_003100) or (Ec-10_006200)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: FERMENTATION-PWY , PWY-5913 , P105-PWY , TCA , PWY-6969 , PWY-5690 , P42-PWY , PWY-7115 , PWY66-398 , PWY-7383 , P108-PWY , PWY-6728 , P23-PWY , PWY-561 , GLYOXYLATE-BYPASS , PWY-1622 , GLUCONEO-PWY , PWY-5392 , MALATE-ASPARTATE-SHUTTLE-PWY , PWY66-399</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MAL_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_OXALACETIC_ACID_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_MALIC__45__NADP__45__RXN" name="Malic oxidoreductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_003680)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-241 , GLUCONEO-PWY , PWY-7117</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MAL_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PYRUVATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_MALONYL__45__COA__45__ACP__45__TRANSACYL__45__RXN" name="Malonyl CoA-acyl carrier protein transacylase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-05_003450)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7388 , PWY-6799 , PWY-4381</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ACP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MALONYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MALONYL__45__ACP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_MALONYL__45__COA__45__DECARBOXYLASE__45__RXN" name="malonyl-CoA decarboxylase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_004180)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MALONYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ACETYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_MALSYN__45__RXN" name="Malate synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_003860)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7294 , GLYOXYLATE-BYPASS , PWY-6728 , PWY-7118 , P105-PWY , GLYOXDEG-PWY , PWY-7295 , PWY-6969</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ACETYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLYOX_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MAL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_MALTODEXGLUCOSID__45__RXN" name="Glucosidase 2 subunit beta" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-23_001860) or (Ec-01_006760)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_1__45__4__45__alpha__45__D__45__Glucan_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Glucopyranose_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_1__45__4__45__alpha__45__D__45__Glucan_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_MANNITOL__45__1__45__PHOSPHATASE__45__RXN" name="MANNITOL-1-PHOSPHATASE-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
            <p>SUBSYSTEM: PWY-6531 , PWY-3881</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_MANNITOL__45__1P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MANNITOL_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_MANNPDEHYDROG__45__RXN" name="mannitol 1-phosphate dehydrogenase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-18_001290) or (Ec-04_003690) or (Ec-23_000570)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6531 , MANNIDEG-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_MANNITOL__45__1P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FRUCTOSE__45__6P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_MANNPISOM__45__RXN" name="RmlC-like cupin domain" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_005440) or (Ec-28_000050) or (Ec-28_000080) or (Ec-20_000830)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-3861 , PWY-7456 , PWY-6992 , PWY-3881 , PWY-5659 , PWY-882 , MANNCAT-PWY , PWY-7586</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__15979_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_FRUCTOSE__45__6P_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_MBCOA__45__DHLIPOAMIDE__45__RXN" name="dihydrolipoyllysine-residue (2-methylbutanoyl)transferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_BCAA__45__dehydrogenase__45__DH__45__lipoyl_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__METHYL__45__BUTYRYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_BCAA__45__dehydrogenase__45__2MB__45__DH__45__lipoyl_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_MEPROPCOA__45__FAD__45__RXN" name="isobutyryl-CoA dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: VALDEG-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ISOBUTYRYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_METHACRYLYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FADH2_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_METBALT__45__RXN" name="METBALT-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_003100)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_O__45__SUCCINYL__45__L__45__HOMOSERINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SUC_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__OXOBUTANOATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_METHENYLTHFCYCLOHYDRO__45__RXN" name="Tetrahydrofolate dehydrogenase/cyclohydrolase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-14_004070) or (Ec-15_001370)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-3841 , PWY-5030 , PWY-5497 , CODH-PWY , 1CMET2-PWY , P164-PWY , PWY-1722 , PWY-2201 , PWY-6613</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_5__45__10__45__METHENYL__45__THF__45__GLU__45__N_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FORMYL__45__THF__45__GLU__45__N_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_METHIONINE__45____45__TRNA__45__LIGASE__45__RXN" name="Methionyl-tRNA synthetase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_002540) or (Ec-18_004570)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: TRNA-CHARGING-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Elongation__45__tRNAMet_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MET_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Charged__45__MET__45__tRNAs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_METHIONYL__45__TRNA__45__FORMYLTRANSFERASE__45__RXN" name="Formyl transferase, C-terminal" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-11_006140)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_L__45__methionyl__45__tRNAfmet_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FORMYL__45__THF__45__GLU__45__N_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_N__45__formyl__45__L__45__methionyl__45__tRNAfmet_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_THF__45__GLU__45__N_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_METHYLACETOACETYLCOATHIOL__45__RXN" name="Thiolase, C-terminal" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-24_000870) or (Ec-22_002850) or (Ec-26_003940)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: ILEUDEG-PWY , PWY-5109</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_2__45__METHYL__45__ACETO__45__ACETYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ACETYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROPIONYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_METHYLACYLYLCOA__45__HYDROXY__45__RXN" name="Methylacrylyl-CoA hydratase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-17_000320) or (Ec-14_006530) or (Ec-16_001250) or (Ec-06_001380) or (Ec-16_003560)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: VALDEG-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__12173_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_METHACRYLYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_METHYLCROTONYL__45__COA__45__CARBOXYLASE__45__RXN" name="Methylcrotonoyl-CoA carboxylase beta chain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-22_002400)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: LEU-DEG2-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HCO3_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__METHYL__45__CROTONYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_TRANS__45__3__45__METHYL__45__GLUTACONYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_METHYLENETHFDEHYDROG__45__NADP__45__RXN" name="methylenetetrahydrofolate dehydrogenase (NADP+)" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-07_007470) or (Ec-14_004070) or (Ec-15_001370)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-3841 , PWY-5497 , CODH-PWY , 1CMET2-PWY , PWY-1722 , PWY-2201</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_METHYLENE__45__THF__45__GLU__45__N_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_5__45__10__45__METHENYL__45__THF__45__GLU__45__N_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_METHYLGLUTACONYL__45__COA__45__HYDRATASE__45__RXN" name="METHYLGLUTACONYL-COA-HYDRATASE-RXN" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: LEU-DEG2-PWY , PWY-7571</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_3__45__HYDROXY__45__3__45__METHYL__45__GLUTARYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_TRANS__45__3__45__METHYL__45__GLUTACONYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_METHYLVALERATE__45__RXN" name="3-methyl-2-oxobutanoate dehydrogenase [(S)-2-methylbutanoyl-transferring)" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_006360)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_2__45__KETO__45__3__45__METHYL__45__VALERATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_BCAA__45__dehydrogenase__45__lipoyl_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_BCAA__45__dehydrogenase__45__2MB__45__DH__45__lipoyl_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_MEVALONATE__45__KINASE__45__RXN" name="GHMP kinase, C-terminal domain" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_004370)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-922 , PWY-7391 , PWY-6174</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_MEVALONATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__499_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_MMUM__45__RXN" name="Homocysteine S-methyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_000980) or (Ec-11_005000)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-702 , PWY-5441 , ADENOSYLHOMOCYSCAT-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__397_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HOMO__45__CYS_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_MET_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_MONOPHENOL__45__MONOOXYGENASE__45__RXN" name="Uncharacterised domain, di-copper centre" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_003140) or (Ec-12_008160)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6481</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_TYR_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DOPAQUINONE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_MRNA__45__GUANYLYLTRANSFERASE__45__RXN" name="mRNA guanylyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-04_002760)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7375</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__8630_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GTP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_G5__45__pppR__45__mRNAs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_MYO__45__INOSITOL__45__1__45__PHOSPHATE__45__SYNTHASE__45__RXN" name="Myo-inositol-1-phosphate synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_005440) or (Ec-06_001090)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6664 , PWY-6372 , PWY-6580 , PWY-4661 , PWY1G-0 , PWY-2301</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_D__45__glucopyranose__45__6__45__phosphate_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_1__45__L__45__MYO__45__INOSITOL__45__1__45__P_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_MYO__45__INOSITOL__45__1OR__45__4__45__MONOPHOSPHATASE__45__RXN" name="Inositol monophosphatase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-04_000760) or (Ec-21_004120) or (Ec-21_001090) or (Ec-15_001780) or (Ec-14_006130) or (Ec-10_005870) or (Ec-02_005670) or (Ec-26_000990) or (Ec-12_001850)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-2301</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_1__45__L__45__MYO__45__INOSITOL__45__1__45__P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_MYO__45__INOSITOL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_MYO__45__INOSITOL__45__2__45__DEHYDROGENASE__45__RXN" name="oxidoreductase, NAD-binding, myo-inositol 2-dehydrogenase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_006070) or (Ec-18_003270) or (Ec-07_006540)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: P562-PWY , PWY-7237 , PWY-7241 , PWY-5940</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_MYO__45__INOSITOL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__14808_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_MYO__45__INOSITOL__45__OXYGENASE__45__RXN" name="inositol oxygenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-09_002560)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-4841</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_MYO__45__INOSITOL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_D__45__Glucopyranuronate_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_N__45__ACETYLGLUTPREDUCT__45__RXN" name="N-acetyl-gamma-glutamyl-phosphate reductase, C-terminal part" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_003520)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: GLUTORN-PWY , ARGSYNBSUB-PWY , PWY-5154</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__469_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_N__45__ACETYL__45__GLUTAMYL__45__P_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_N__45__ACETYLTRANSFER__45__RXN" name="Amino-acid N-acetyltransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-07_005560) or (Ec-14_006230)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5154 , ARGSYNBSUB-PWY , GLUTORN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ACETYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLT_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACETYL__45__GLU_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_N__45__CARBAMOYLPUTRESCINE__45__AMIDASE__45__RXN" name="N-carbamoylputrescine amidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_003010)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-43 , ARGDEG-III-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__597_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PUTRESCINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_NAD__43____45__ADP__45__RIBOSYLTRANSFERASE__45__RXN" name="NAD+ ADP-ribosyltransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_004460) or (Ec-02_000290) or (Ec-12_004430) or (Ec-12_004140) or (Ec-13_002560) or (Ec-12_004420) or (Ec-12_004440) or (Ec-18_004480) or (Ec-11_005620) or (Ec-19_004120) or (Ec-02_000280) or (Ec-02_000300) or (Ec-12_004130) or (Ec-11_005600) or (Ec-23_000530) or (Ec-01_002790) or (Ec-12_004450) or (Ec-19_004090) or (Ec-17_000880) or (Ec-13_002580) or (Ec-19_003690) or (Ec-23_000550) or (Ec-11_005650) or (Ec-11_005610) or (Ec-17_003060) or (Ec-11_005640)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ADP__45__D__45__Ribosyl__45__Acceptors_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NIACINAMIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP__45__D__45__Ribosyl__45__Acceptors_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_NAD__45__KIN__45__RXN" name="NAD+ kinase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-22_000250) or (Ec-08_006010) or (Ec-18_003910)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: NADPHOS-DEPHOS-PWY , PWY-7269 , PWY-5083 , PWY-7268 , NADPHOS-DEPHOS-PWY-1</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_NAD__45__SYNTH__45__GLN__45__RXN" name="Carbon-nitrogen hydrolase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-14_000810)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7761 , PWY-5653 , PWY-5381 , PYRIDNUCSYN-PWY , PYRIDNUCSAL-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GLN_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DEAMIDO__45__NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLT_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_NAD__45__SYNTH__45__NH3__45__RXN" name="NAD-SYNTH-NH3-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PYRIDNUCSYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DEAMIDO__45__NAD_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_NADH__45__DEHYDROG__45__A__45__RXN" name="NUOI homolog, NADH dehydrogenase (ubiquinone) subunit" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_000420) or (Ec-10_005810) or (Ec-03_000900) or (Ec-19_001720) or (Ec-05_005740) or (Ec-18_003900) or (Ec-20_001030) or (Ec-10_001380) or (Ec-06_007580) or (Ec-02_006350) or (Ec-21_004880) or (Ec-21_003400) or (Ec-01_008630) or (Ec-08_005450) or (Ec-21_001150)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-4302 , PWY0-1334 , PWY-5083 , PWY0-1335 , PWY-6692 , PWY-3781</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Ubiquinones_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="5" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Ubiquinols_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_e" stoichiometry="4" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_NADH__45__DEHYDROGENASE__45__RXN" name="NADH dehydrogenase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_006350)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Acceptor_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Donor__45__H2_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_NADPH__45__DEHYDROGENASE__45__FLAVIN__45__RXN" name="NAD(P)-binding domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_004340) or (Ec-27_006530) or (Ec-19_002720) or (Ec-02_004330)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_RIBOFLAVIN_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__316_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_NAG1P__45__URIDYLTRANS__45__RXN" name="NAG1P-URIDYLTRANS-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-23_002570)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: UDPNACETYLGALSYN-PWY , PWY0-1261 , PWY-5514 , UDPNAGSYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_N__45__ACETYL__45__D__45__GLUCOSAMINE__45__1__45__P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_UTP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_UDP__45__N__45__ACETYL__45__D__45__GLUCOSAMINE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_NAPHTHOATE__45__SYN__45__RXN" name="naphthoate synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-24_003920)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5837</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__6972_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__9925_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_NARINGENIN__45__3__45__DIOXYGENASE__45__RXN" name="NARINGENIN-3-DIOXYGENASE-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_002750) or (Ec-19_002760) or (Ec-08_003510)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY1F-FLAVSYN , PWY-6787</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NARINGENIN__45__CMPD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_DIHYDROKAEMPFEROL__45__CMPD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SUC_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_NARINGENIN__45__CHALCONE__45__SYNTHASE__45__RXN" name="NARINGENIN-CHALCONE-SYNTHASE-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_004580) or (Ec-07_006660) or (Ec-07_003670)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-6316 , PWY-7397 , PWY1F-FLAVSYN , PWY-6787 , PWY-5135</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_P__45__COUMAROYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="3" constant="false"/>
          <speciesReference species="M_MALONYL__45__COA_c" stoichiometry="3" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CO__45__A_c" stoichiometry="4" constant="false"/>
          <speciesReference species="M_APIGENIN_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="3" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_NICONUCADENYLYLTRAN__45__RXN" name="NICONUCADENYLYLTRAN-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5653 , PWY-7761 , PWY-5381 , PYRIDNUCSYN-PWY , PYRIDNUCSAL-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NICOTINATE_NUCLEOTIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_DEAMIDO__45__NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_NICOTINATEPRIBOSYLTRANS__45__RXN" name="nicotinate phosphoribosyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_002350)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PYRIDNUCSAL-PWY , PWY-5381</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PRPP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NIACINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NICOTINATE_NUCLEOTIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_NITRATE__45__REDUCTASE__45__NADH__45__RXN" name="NAD(P)H-Nitrate reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_005740)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-381</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NITRATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NITRITE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_NITRATE__45__REDUCTASE__45__NADPH__45__RXN" name="NAD(P)H-Nitrate reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_005740)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5675</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NITRATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NITRITE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_NITRATE__45__REDUCTASE__45__NADPORNOPH__45__RXN" name="NAD(P)H-Nitrate reductase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_005740)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NITRITE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD__45__P__45__OR__45__NOP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADH__45__P__45__OR__45__NOP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NITRATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_NUCLEOSIDE__45__DIP__45__KIN__45__RXN" name="nucleoside diphosphate kinase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-22_003280) or (Ec-07_000140) or (Ec-26_003930) or (Ec-04_001140) or (Ec-03_001380) or (Ec-11_004330) or (Ec-11_005170)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Nucleoside__45__Diphosphates_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Nucleoside__45__Triphosphates_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_NUCLEOSIDE__45__DIPHOSPHATASE__45__RXN" name="Apyrase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_001970)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Nucleoside__45__Diphosphates_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Nucleoside__45__Monophosphates_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_NUCLEOSIDE__45__TRIPHOSPHATASE__45__RXN" name="nucleoside-triphosphatase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_004860) or (Ec-03_001180) or (Ec-01_003690) or (Ec-17_000870) or (Ec-06_005470) or (Ec-02_001970) or (Ec-18_004660) or (Ec-02_005730) or (Ec-28_000420) or (Ec-05_005340)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Nucleoside__45__Triphosphates_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Nucleoside__45__Diphosphates_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_O__45__SUCCHOMOSERLYASE__45__RXN" name="O-SUCCHOMOSERLYASE-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_003100)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: HOMOSER-METSYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_O__45__SUCCINYL__45__L__45__HOMOSERINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CYS_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_L__45__CYSTATHIONINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SUC_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_OHACYL__45__COA__45__DEHYDROG__45__RXN" name="3-hydroxyacyl-CoA dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_005290) or (Ec-14_006530)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY66-391 , PWY-5136 , FAO-PWY , PWY-7007</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_L__45__3__45__HYDROXYACYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__KETOACYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_OHMETHYLBILANESYN__45__RXN" name="hydroxymethylbilane synthase, putative chloroplast precursor" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-25_002760)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5189 , PWY-5188</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PORPHOBILINOGEN_c" stoichiometry="4" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="4" constant="false"/>
          <speciesReference species="M_HYDROXYMETHYLBILANE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ORNCARBAMTRANSFER__45__RXN" name="Aspartate/ornithine carbamoyltransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-00_004630)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: CITRULLINE-DEG-PWY , CITRULBIO-PWY , ARGSYN-PWY , PWY-7400 , PWY-4981 , ARGSYNBSUB-PWY , PWY-4984</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CARBAMOYL__45__P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__ORNITHINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__CITRULLINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ORNDECARBOX__45__RXN" name="Ornithine decarboxylase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-11_003270)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-46 , PWY-6305 , ORNDEG-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_L__45__ORNITHINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PUTRESCINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ORNITHINE__45____45__OXO__45__ACID__45__AMINOTRANSFERASE__45__RXN" name="Ornithine aminotransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_003730)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_2__45__Oxo__45__carboxylates_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__ORNITHINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_L__45__GLUTAMATE_GAMMA__45__SEMIALDEHYDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Amino__45__Acids__45__20_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ORNITHINE__45____45__OXO__45__ACID__45__AMINOTRANSFERASE__45__RXN__45__L__45__ORNITHINE__47__P__45__HYDROXY__45__PHENYLPYRUVATE__47____47__TYR__47__L__45__GLUTAMATE_GAMMA__45__SEMIALDEHYDE__46__73__46__" name="ORNITHINE--OXO-ACID-AMINOTRANSFERASE-RXN-L-ORNITHINE/P-HYDROXY-PHENYLPYRUVATE//TYR/L-GLUTAMATE_GAMMA-SEMIALDEHYDE.73." reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_P__45__HYDROXY__45__PHENYLPYRUVATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__ORNITHINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_L__45__GLUTAMATE_GAMMA__45__SEMIALDEHYDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_TYR_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ORNITHINE__45__CYCLODEAMINASE__45__RXN" name="Ornithine cyclodeaminase/mu-crystallin" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-18_004550)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: ORN-AMINOPENTANOATE-CAT-PWY , ARG-GLU-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_L__45__ORNITHINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PRO_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_ORNITHINE__45__GLU__45__AMINOTRANSFERASE__45__RXN" name="Ornithine--oxo-glutarate aminotransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_003730)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: ARGASEDEG-PWY , PWY-6344 , CITRULBIO-PWY , ARG-PRO-PWY , ARGININE-SYN4-PWY , PWY-4981 , PWY-6922 , PWY-3341</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__ORNITHINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_GLT_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__GLUTAMATE_GAMMA__45__SEMIALDEHYDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_OROPRIBTRANS__45__RXN" name="OROPRIBTRANS-RXN" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-23_000110)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5686</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OROTIDINE__45__5__45__PHOSPHATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PRPP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OROTATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_OROTPDECARB__45__RXN" name="Aldolase-type TIM barrel" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-23_000110)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5686</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OROTIDINE__45__5__45__PHOSPHATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_UMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_OXALODECARB__45__RXN" name="malate dehydrogenase (decarboxylating) (NAD+)" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-07_002070) or (Ec-07_002060) or (Ec-01_003680)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6339 , METHYLGALLATE-DEGRADATION-PWY , P184-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXALACETIC_ACID_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PYRUVATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_P__45__PANTOCYSDECARB__45__RXN" name="P-PANTOCYSDECARB-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_000890)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: COA-PWY , COA-PWY-1</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_R__45__4__45__PHOSPHOPANTOTHENOYL__45__L__45__CYSTEINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PANTETHEINE__45__P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PABASYN__45__RXN" name="ADC synthase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_001290)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6543</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GLN_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CHORISMATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_GLT_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_4__45__AMINO__45__4__45__DEOXYCHORISMATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PANTEPADENYLYLTRAN__45__RXN" name="PANTEPADENYLYLTRAN-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
            <p>SUBSYSTEM: COA-PWY , COA-PWY-1</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PANTETHEINE__45__P_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_DEPHOSPHO__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PANTOATE__45__BETA__45__ALANINE__45__LIG__45__RXN" name="pantoate-beta-alanine ligase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_004720)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PANTO-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_B__45__ALANINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__PANTOATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PANTOTHENATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PANTOTHENATE__45__KIN__45__RXN" name="pantothenate kinase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_003730) or (Ec-11_006230)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: COA-PWY-1 , PANTO-PWY , PWY-3961</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PANTOTHENATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_4__45__P__45__PANTOTHENATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PEPCARBOX__45__RXN" name="Phosphoenolpyruvate carboxylase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-28_003470)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWYQT-4429 , PWY-6549 , PWY-1622 , PWY-7124 , PWY-7117 , FERMENTATION-PWY , P23-PWY , PWY-5913 , PWY-6146 , PWY-241 , PWY-6142 , PWY-7115</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_HCO3_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PHOSPHO__45__ENOL__45__PYRUVATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXALACETIC_ACID_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PEPCARBOXYKIN__45__RXN" name="phosphoenolpyruvate carboxykinase (ATP)" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_002930)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7117 , PWY-561 , GLUCONEO-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXALACETIC_ACID_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PHOSPHO__45__ENOL__45__PYRUVATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PEPDEPHOS__45__RXN" name="Pyruvate kinase, alpha/beta" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_004170) or (Ec-06_006860) or (Ec-12_000950)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: P124-PWY , PWY-2221 , PWY-7218 , PWY-7383 , PWY-5723 , FERMENTATION-PWY , PWY-7003 , P122-PWY , ANAGLYCOLYSIS-PWY , P341-PWY , PWY-6886 , PWY-1042 , PWY-5484 , NPGLUCAT-PWY , PWY-6142 , GLYCOLYSIS , PWY-6901</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PYRUVATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PHOSPHO__45__ENOL__45__PYRUVATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PEPSYNTH__45__RXN" name="PEPSYNTH-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5484 , P23-PWY , GLYCOLYSIS , GLUCONEO-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PYRUVATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PHOSPHO__45__ENOL__45__PYRUVATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PEPTIDE__45__ASPARTATE__45__BETA__45__DIOXYGENASE__45__RXN" name="peptide-aspartate beta-dioxygenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-24_001390) or (Ec-14_006050) or (Ec-06_006420) or (Ec-24_000830)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Protein__45__L__45__Aspartates_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Peptide__45__3__45__hydroxy__45__L__45__Aspartates_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SUC_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PEPTIDYLPROLYL__45__ISOMERASE__45__RXN" name="Peptidyl-prolyl cis-trans isomerase, FKBP-type" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_005540) or (Ec-04_005350) or (Ec-21_005670) or (Ec-22_000860) or (Ec-17_002700) or (Ec-23_003510) or (Ec-27_003120) or (Ec-17_000400) or (Ec-09_002840) or (Ec-14_002740) or (Ec-03_003770) or (Ec-14_000380) or (Ec-08_001300) or (Ec-07_006150) or (Ec-19_001050) or (Ec-08_000710) or (Ec-15_002640) or (Ec-13_001310) or (Ec-04_005600) or (Ec-21_001540) or (Ec-15_002210) or (Ec-23_001830) or (Ec-12_002280) or (Ec-06_002180) or (Ec-09_001710) or (Ec-05_001980) or (Ec-04_003010) or (Ec-07_005110) or (Ec-11_003150) or (Ec-02_005120) or (Ec-01_003190) or (Ec-20_000240) or (Ec-23_002000) or (Ec-12_005100) or (Ec-06_010460) or (Ec-08_001030) or (Ec-00_007940) or (Ec-17_002500) or (Ec-18_000770) or (Ec-01_003590) or (Ec-04_002010) or (Ec-08_004100) or (Ec-26_000140) or (Ec-24_001370) or (Ec-01_006400) or (Ec-06_010450) or (Ec-22_002640) or (Ec-12_001720) or (Ec-07_004980) or (Ec-11_005860) or (Ec-07_000740) or (Ec-21_005550) or (Ec-01_003910)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__8624_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__8625_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PEROXID__45__RXN" name="peroxidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_001880) or (Ec-05_002520) or (Ec-24_002370) or (Ec-14_006530) or (Ec-02_003170) or (Ec-11_003410) or (Ec-08_006020) or (Ec-11_001530) or (Ec-28_003740) or (Ec-26_000310) or (Ec-19_000230) or (Ec-02_000470) or (Ec-20_002770) or (Ec-02_001210) or (Ec-06_003550) or (Ec-00_008210) or (Ec-04_004690) or (Ec-00_008220) or (Ec-17_002430) or (Ec-02_001740) or (Ec-14_002880) or (Ec-19_001450) or (Ec-00_008250) or (Ec-16_000240) or (Ec-24_002030) or (Ec-05_003380) or (Ec-00_010030) or (Ec-17_002450) or (Ec-00_008240) or (Ec-27_004950)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Phenolic__45__Donors_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_HYDROGEN__45__PEROXIDE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Phenoxyl__45__rad__45__of__45__phenolic__45__donors_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PGLUCISOM__45__RXN" name="glucose-6-phosphate isomerase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-13_003530) or (Ec-24_002470) or (Ec-13_003810)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-3801 , PWY-6992 , PWY-7385 , SUCSYN-PWY , PWY-621 , P124-PWY , PWY-622 , PWY-7238 , RUMP-PWY , PWY-7347 , PWY-6142 , GLYCOLYSIS , ANAGLYCOLYSIS-PWY , PWY-5384 , P122-PWY , GLUCONEO-PWY , PWY-5514 , PWY-5659 , P341-PWY , UDPNAGSYN-PWY , PWY-6981 , PWY66-399 , PWY-5054</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_D__45__glucopyranose__45__6__45__phosphate_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_FRUCTOSE__45__6P_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PGLUCONDEHYDRAT__45__RXN" name="Dihydroxy-acid/6-phosphogluconate dehydratase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_000220)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: ENTNER-DOUDOROFF-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__2961_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_2__45__KETO__45__3__45__DEOXY__45__6__45__P__45__GLUCONATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PGLYCDEHYDROG__45__RXN" name="Phosphoglycerate dehydrogenase / Phosphoserine aminotransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-17_000820) or (Ec-04_006300) or (Ec-11_000960)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: SERSYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_G3P_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_3__45__P__45__HYDROXYPYRUVATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PGPPHOSPHA__45__RXN" name="PGPPHOSPHA-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY0-1545 , PWY-5269 , PWY-5668 , PWY4FS-8 , PWY4FS-7</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_L__45__1__45__PHOSPHATIDYL__45__GLYCEROL__45__P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_L__45__1__45__PHOSPHATIDYL__45__GLYCEROL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PHEAMINOTRANS__45__RXN" name="PHEAMINOTRANS-RXN" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_003270) or (Ec-12_000850) or (Ec-09_004540) or (Ec-01_007480) or (Ec-00_001230) or (Ec-23_003500)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: ANAPHENOXI-PWY , PHESYN , PWY-7432 , PWY-5079</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PHENYL__45__PYRUVATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLT_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PHE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PHENDEHYD__45__RXN" name="PHENDEHYD-RXN" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6534 , PWY-6941 , PWY-6318 , ANAPHENOXI-PWY , 2PHENDEG-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PHENYLACETALDEHYDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PHENYLACETATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PHENYLALANINE__45____45__TRNA__45__LIGASE__45__RXN" name="Phenylalanine--tRNA ligase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_008260) or (Ec-27_001900) or (Ec-15_003330) or (Ec-02_005310)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: TRNA-CHARGING-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PHE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PHE__45__tRNAs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Charged__45__PHE__45__tRNAs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PHENYLPYRUVATE__45__TAUTOMERASE__45__RXN" name="PHENYLPYRUVATE-TAUTOMERASE-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PHENYL__45__PYRUVATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ENOL__45__PHENYLPYRUVATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PHOSACETYLGLUCOSAMINEMUT__45__RXN" name="Phosphoacetylglucosamine mutase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_005030)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: UDPNACETYLGALSYN-PWY , PWY-6906 , PWY-5514</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_N__45__ACETYL__45__D__45__GLUCOSAMINE__45__6__45__P_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_N__45__ACETYL__45__D__45__GLUCOSAMINE__45__1__45__P_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PHOSCHOL__45__RXN" name="N-acylphosphatidylethanolamine-specific phospholipase D" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-08_003110)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: LIPASYN-PWY , PWY-3561 , PWY-7039</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PHOSPHATIDYLCHOLINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__PHOSPHATIDATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CHOLINE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PHOSGLYPHOS__45__RXN" name="Phosphoglycerate kinase, C-terminal" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_001350) or (Ec-21_005710) or (Ec-08_002400) or (Ec-21_004220) or (Ec-12_004530) or (Ec-12_004550)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: P124-PWY , P122-PWY , GLUCONEO-PWY , SUCSYN-PWY , P185-PWY , ANAGLYCOLYSIS-PWY , PWY-1042 , CALVIN-PWY , PWY-6886 , PWY-5484 , PWY66-399 , PWY-7003 , GLYCOLYSIS , PWY-6901</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_G3P_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_DPG_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PHOSMANMUT__45__RXN" name="Phosphomannomutase/phosphoglucomutase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-08_004630) or (Ec-17_001480)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5659 , PWY-7456 , PWY-882 , PWY-7586</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_MANNOSE__45__1P_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__15979_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PHOSNACMURPENTATRANS__45__RXN" name="UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine:undecaprenyl-phosphate transferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-07_007020)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PEPTIDOGLYCANSYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__9646_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_C1_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_C5_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_UMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PHOSPHAGLYPSYN__45__RXN" name="CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-11_001460)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY0-1545 , PWY-5269 , PWY-5668 , PWY4FS-8 , PWY4FS-7</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CDPDIACYLGLYCEROL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLYCEROL__45__3P_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__1__45__PHOSPHATIDYL__45__GLYCEROL__45__P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PHOSPHASERSYN__45__RXN" name="Phosphatidyl serine synthase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_005920)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5669 , PHOSLIPSYN2-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_SER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CDPDIACYLGLYCEROL_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__1__45__PHOSPHATIDYL__45__SERINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PHOSPHATIDATE__45__PHOSPHATASE__45__RXN" name="PHOSPHATIDATE-PHOSPHATASE-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: TRIGLSYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_L__45__PHOSPHATIDATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DIACYLGLYCEROL_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PHOSPHOGLUCMUT__45__RXN" name="Phosphomannomutase/phosphoglucomutase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-17_001480)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: GLYCOGENSYNTH-PWY , PWY-5384 , PWY-7343 , PWY-3801 , PWY-5941 , PWY-2723 , GLUCOSE1PMETAB-PWY , PWY-622 , PWY-6737 , PWY-5661 , GLYCOCAT-PWY , PWY-6731 , PWY-7238 , PWY-5940 , PWY66-422 , PWY-6317</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GLC__45__1__45__P_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_D__45__glucopyranose__45__6__45__phosphate_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PHOSPHOGLYCERATE__45__PHOSPHATASE__45__RXN" name="PHOSPHOGLYCERATE-PHOSPHATASE-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_2__45__PG_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLYCERATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PHOSPHOLIPASE__45__A1__45__RXN" name="PHOSPHOLIPASE-A1-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: LIPASYN-PWY , PWY-6803</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PHOSPHATIDYLCHOLINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__Acylglycero__45__Phosphocholines_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Long__45__Chain__45__Fatty__45__Acids_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PHOSPHOLIPASE__45__C__45__RXN" name="PHOSPHOLIPASE-C-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: LIPASYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PHOSPHATIDYLCHOLINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_DIACYLGLYCEROL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PHOSPHORYL__45__CHOLINE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PHOSPHOMEVALONATE__45__KINASE__45__RXN" name="GHMP kinase, C-terminal domain" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-25_002910)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-922 , PWY-7391</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__499_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__641_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PHOSPHORIBULOKINASE__45__RXN" name="Phosphoribulokinase/uridine kinase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_003910) or (Ec-26_002450)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: CALVIN-PWY , PWY-5723</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_RIBULOSE__45__5P_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_D__45__RIBULOSE__45__15__45__P2_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PLASTOQUINOL__45____45__PLASTOCYANIN__45__REDUCTASE__45__RXN" name="Cytochrome b6-f complex Fe-S subunit" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-05_006690)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-101</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Oxidized__45__Plastocyanins_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_PROTON_e" stoichiometry="2" constant="false"/>
          <speciesReference species="M_Plastoquinols_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PLASTOQUINONE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Plastocyanin__45__Reduced_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="4" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PMPOXI__45__RXN" name="pyridoxamine-phosphate oxidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-09_002030) or (Ec-01_000340) or (Ec-10_006030)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7204 , PLPSAL-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PYRIDOXAMINE__45__5P_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_HYDROGEN__45__PEROXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PYRIDOXAL_PHOSPHATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PNKIN__45__RXN" name="Pyridoxamine kinase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_001230)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7204 , PLPSAL-PWY , PWY-7282</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PYRIDOXINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PYRIDOXINE__45__5P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PNPOXI__45__RXN" name="pyridoxamine-phosphate oxidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_000340) or (Ec-10_006030) or (Ec-09_002030)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7204 , PLPSAL-PWY , PYRIDOXSYN-PWY , PWY-7282</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PYRIDOXINE__45__5P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_HYDROGEN__45__PEROXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PYRIDOXAL_PHOSPHATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_POLYNUCLEOTIDE__45__ADENYLYLTRANSFERASE__45__RXN" name="polynucleotide adenylyltransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_008160) or (Ec-01_006460) or (Ec-11_003320) or (Ec-16_004310)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_mRNAs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_mRNAs_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PORPHOBILSYNTH__45__RXN" name="porphobilinogen synthase, putative chloroplast precursor" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-00_001750)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5189 , PWY-5188</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_5__45__AMINO__45__LEVULINATE_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PORPHOBILINOGEN_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PRAISOM__45__RXN" name="Indole-3-glycerol phosphate synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-08_003020)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: TRPSYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_N__45__5__45__PHOSPHORIBOSYL__45__ANTHRANILATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBOXYPHENYLAMINO__45__DEOXYRIBULOSE__45__P_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PREPHENATE__45__ASP__45__TRANSAMINE__45__RXN" name="PREPHENATE-ASP-TRANSAMINE-RXN" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXALACETIC_ACID_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__659_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_L__45__ASPARTATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PREPHENATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PREPHENATE__45__DEHYDROGENASE__45__NADP__43____45__RXN" name="PREPHENATE-DEHYDROGENASE-NADP+-RXN" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PREPHENATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_P__45__HYDROXY__45__PHENYLPYRUVATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PREPHENATE__45__TRANSAMINE__45__RXN" name="PREPHENATE-TRANSAMINE-RXN" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
            <p>SUBSYSTEM: PWY-3462 , PWY-3461 , PWY-6120</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__659_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PREPHENATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLT_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PREPHENATEDEHYDRAT__45__RXN" name="prephenate dehydratase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_003130)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PHESYN , PWY-7432</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PREPHENATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PHENYL__45__PYRUVATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PREPHENATEDEHYDROG__45__RXN" name="PREPHENATEDEHYDROG-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
            <p>SUBSYSTEM: PWY-7303 , TYRSYN</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PREPHENATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_P__45__HYDROXY__45__PHENYLPYRUVATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PRIBFAICARPISOM__45__RXN" name="1-(5-phosphoribosyl)-5- ((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_004720)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: HISTSYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PHOSPHORIBOSYL__45__FORMIMINO__45__AICAR__45__P_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PHOSPHORIBULOSYL__45__FORMIMINO__45__AICAR__45__P_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PRODISULFREDUCT__45__A__45__RXN" name="glutaredoxin reductase (glutathione)" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: GLUT-REDOX-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Ox__45__Glutaredoxins_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLUTATHIONE_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_OXIDIZED__45__GLUTATHIONE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Red__45__Glutaredoxins_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PROLINE__45____45__TRNA__45__LIGASE__45__RXN" name="Anticodon-binding" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-08_005570) or (Ec-26_002190)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: TRNA-CHARGING-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PRO__45__tRNAs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PRO_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Charged__45__PRO__45__tRNAs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PROPIONYL__45__COA__45__CARBOXY__45__RXN" name="propionyl-CoA carboxylase, alpha subunit" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_010970)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6728 , PWY-7384 , PWY-5743 , PROPIONMET-PWY , PWY-5789</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_HCO3_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROPIONYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_D__45__METHYL__45__MALONYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PROTEIN__45__ARGININE__45__DEIMINASE__45__RXN" name="protein-arginine deiminase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_001540)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-4921</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Protein__45__L__45__Arginines_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTEIN__45__L__45__CITRULLINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PROTEIN__45__KINASE__45__RXN" name="protein kinase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-09_001700) or (Ec-08_005740) or (Ec-09_003100) or (Ec-20_000540) or (Ec-20_003580) or (Ec-10_001410) or (Ec-19_004290) or (Ec-26_005180) or (Ec-00_008440) or (Ec-09_004090) or (Ec-00_000630) or (Ec-19_001330) or (Ec-19_001750) or (Ec-23_003900) or (Ec-13_001390) or (Ec-08_003010) or (Ec-26_003880) or (Ec-06_009160) or (Ec-08_002540) or (Ec-17_001880) or (Ec-06_008170) or (Ec-14_001790) or (Ec-14_005880) or (Ec-12_006640) or (Ec-20_002080) or (Ec-21_001550) or (Ec-20_003020) or (Ec-12_006180) or (Ec-04_005630) or (Ec-05_003830) or (Ec-10_003690) or (Ec-08_005770) or (Ec-28_000730) or (Ec-04_002840) or (Ec-25_000900) or (Ec-21_003680) or (Ec-17_003950) or (Ec-01_000110) or (Ec-15_004950) or (Ec-26_001060) or (Ec-20_002560) or (Ec-03_003900) or (Ec-14_001390) or (Ec-11_000030) or (Ec-12_001080) or (Ec-27_000340) or (Ec-09_002580) or (Ec-10_002680) or (Ec-26_001880) or (Ec-06_009070) or (Ec-21_002340) or (Ec-00_005950) or (Ec-21_003700) or (Ec-02_001380) or (Ec-21_001630) or (Ec-26_004390) or (Ec-01_004940) or (Ec-21_002120) or (Ec-02_005950) or (Ec-06_004050) or (Ec-12_003290) or (Ec-01_008590) or (Ec-17_004210) or (Ec-23_000610) or (Ec-04_001960) or (Ec-06_008930) or (Ec-18_003590) or (Ec-01_003490) or (Ec-16_002230) or (Ec-01_009800) or (Ec-14_000990) or (Ec-20_002410) or (Ec-09_000670) or (Ec-23_000620) or (Ec-14_000600) or (Ec-04_000570) or (Ec-21_001650) or (Ec-04_003190) or (Ec-07_001020) or (Ec-27_005760) or (Ec-01_003040) or (Ec-20_004620) or (Ec-11_000900) or (Ec-28_002290) or (Ec-20_001110) or (Ec-12_002110) or (Ec-04_001390) or (Ec-03_002400) or (Ec-16_002990) or (Ec-12_005460) or (Ec-06_007860) or (Ec-14_004820) or (Ec-00_002420) or (Ec-02_003150) or (Ec-24_001340) or (Ec-00_006420) or (Ec-01_007160) or (Ec-08_005990) or (Ec-15_002260) or (Ec-04_002300) or (Ec-10_001310) or (Ec-03_000320) or (Ec-12_004360) or (Ec-21_005790) or (Ec-20_004690) or (Ec-10_001120) or (Ec-24_004220) or (Ec-27_003020) or (Ec-22_000600) or (Ec-11_002110) or (Ec-06_008830) or (Ec-10_004110) or (Ec-10_004630) or (Ec-04_001400) or (Ec-12_001120) or (Ec-27_006070) or (Ec-13_000360) or (Ec-24_002550) or (Ec-18_002570) or (Ec-21_004630) or (Ec-03_000200) or (Ec-01_008360) or (Ec-17_001180) or (Ec-06_007870) or (Ec-27_000960) or (Ec-03_000060) or (Ec-11_004020) or (Ec-27_002900) or (Ec-08_001170) or (Ec-06_009420) or (Ec-14_000610) or (Ec-11_003680) or (Ec-03_005020) or (Ec-17_001440) or (Ec-10_000640) or (Ec-01_003940) or (Ec-07_006100) or (Ec-02_003750) or (Ec-05_004950) or (Ec-07_003570) or (Ec-00_000730) or (Ec-09_000490) or (Ec-16_003030) or (Ec-14_006540) or (Ec-21_002020) or (Ec-02_004750) or (Ec-12_003970) or (Ec-23_000950) or (Ec-19_004340) or (Ec-08_002250) or (Ec-24_004340) or (Ec-23_004060) or (Ec-06_000030) or (Ec-17_001910) or (Ec-27_002040) or (Ec-07_001510) or (Ec-14_006350) or (Ec-20_004740) or (Ec-01_011660) or (Ec-06_000360) or (Ec-00_000260) or (Ec-08_002020) or (Ec-11_004250) or (Ec-01_005980) or (Ec-12_005680) or (Ec-25_003130) or (Ec-22_002380) or (Ec-17_003120) or (Ec-00_002050) or (Ec-06_008640) or (Ec-01_004020) or (Ec-20_000870) or (Ec-12_003980) or (Ec-16_003920) or (Ec-09_003630) or (Ec-05_001850) or (Ec-18_002250) or (Ec-02_003930) or (Ec-01_001480) or (Ec-26_001500) or (Ec-13_001990) or (Ec-15_003720) or (Ec-07_002880) or (Ec-09_001290) or (Ec-07_003830) or (Ec-09_002640) or (Ec-07_004500) or (Ec-24_001050) or (Ec-05_002640) or (Ec-01_011080) or (Ec-01_002420) or (Ec-14_006190) or (Ec-01_003570) or (Ec-14_001140) or (Ec-27_000730) or (Ec-06_003920) or (Ec-06_003970) or (Ec-19_001520) or (Ec-10_004100) or (Ec-20_000880) or (Ec-22_000460) or (Ec-10_003510) or (Ec-11_002430) or (Ec-19_004320) or (Ec-21_006400) or (Ec-01_011000) or (Ec-04_001920) or (Ec-18_004510) or (Ec-11_000870) or (Ec-18_001180) or (Ec-04_002930) or (Ec-10_005480) or (Ec-10_001350) or (Ec-19_004330) or (Ec-16_003470) or (Ec-15_002200) or (Ec-00_007690) or (Ec-04_002150) or (Ec-26_002040) or (Ec-26_005140) or (Ec-14_000740) or (Ec-20_000940) or (Ec-08_000360) or (Ec-00_000950) or (Ec-12_002380) or (Ec-09_003490) or (Ec-11_004750) or (Ec-05_003810) or (Ec-21_004850) or (Ec-21_000870) or (Ec-12_004860) or (Ec-22_000610) or (Ec-10_001290) or (Ec-06_001790) or (Ec-11_006040) or (Ec-20_001540) or (Ec-19_002480)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Protein__45__L__45__serine__45__or__45__L__45__threonine_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Protein__45__Ser__45__or__45__Thr__45__phosphate_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PROTEIN__45__TYROSINE__45__PHOSPHATASE__45__RXN" name="protein tyrosine phosphatase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-25_001190) or (Ec-05_001560) or (Ec-07_007610) or (Ec-21_001700) or (Ec-08_002600) or (Ec-01_007140) or (Ec-06_003660) or (Ec-11_005420) or (Ec-05_003800) or (Ec-01_010740) or (Ec-12_001770)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Protein__45__tyrosine__45__phosphates_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Protein__45__Tyrosines_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PROTOHEMEFERROCHELAT__45__RXN" name="Ferrochelatase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_005360)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: HEMESYN2-PWY , HEME-BIOSYNTHESIS-II , PWY0-1415</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_PROTOHEME_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_FE__43__2_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTOPORPHYRIN_IX_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PROTOPORGENOXI__45__RXN" name="protoporphyrinogen oxidase, putative chloroplast precursor" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-25_003100)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: HEME-BIOSYNTHESIS-II , PWY-7159 , CHLOROPHYLL-SYN , PWY0-1415</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="3" constant="false"/>
          <speciesReference species="M_PROTOPORPHYRINOGEN_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTOPORPHYRIN_IX_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HYDROGEN__45__PEROXIDE_c" stoichiometry="3" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PRPPAMIDOTRANS__45__RXN" name="Class II glutamine amidotransferase domain" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-07_005050) or (Ec-02_005190)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6122 , PWY-6277 , PWY-6121 , PWY-7282</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLT_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_5__45__P__45__BETA__45__D__45__RIBOSYL__45__AMINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PRPP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLN_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PRPPSYN__45__RXN" name="ribose phosphate diphosphokinase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-23_003970) or (Ec-26_004100) or (Ec-24_004180) or (Ec-06_008650)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY0-662</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_RIBOSE__45__5P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PRPP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PRTRANS__45__RXN" name="Glycosyl transferase, family 3" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_003500)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: TRPSYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_N__45__5__45__PHOSPHORIBOSYL__45__ANTHRANILATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ANTHRANILATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PRPP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PSERPHOSPHA__45__RXN" name="HAD-like domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-18_001570)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Phosphoserines_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Serines_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PSERTRANSAM__45__RXN" name="Phosphoglycerate dehydrogenase / Phosphoserine aminotransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-17_000820)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: SERSYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_3__45__P__45__SERINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_3__45__P__45__HYDROXYPYRUVATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLT_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PSERTRANSAMPYR__45__RXN" name="Phosphoglycerate dehydrogenase / Phosphoserine aminotransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-17_000820)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PYRIDOXSYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_3OH__45__4P__45__OH__45__ALPHA__45__KETOBUTYRATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLT_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_4__45__PHOSPHONOOXY__45__THREONINE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PSEUDOURIDINE__45__KINASE__45__RXN" name="PSEUDOURIDINE-KINASE-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6019</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__497_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PSEUDOURIDINE__45__5__45__P_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PSII__45__RXN" name="Photosystem II Pbs27" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_005010)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-101</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PLASTOQUINONE_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_PROTON_e" stoichiometry="4" constant="false"/>
          <speciesReference species="M_Light_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Plastoquinols_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="4" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PYFLAVOXRE__45__RXN" name="Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-15_004230) or (Ec-18_003420) or (Ec-23_002710)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PYRUVATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Oxidized__45__flavodoxins_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ACETYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Reduced__45__flavodoxins_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PYRAMKIN__45__RXN" name="Pyridoxamine kinase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_001230)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7204 , PLPSAL-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PYRIDOXAMINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PYRIDOXAMINE__45__5P_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PYRAZIN__45__RXN" name="Amidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_009020) or (Ec-02_005910)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PYRAZINAMIDE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PYRAZINOIC__45__ACID_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PYRIDOXKIN__45__RXN" name="Pyridoxamine kinase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_001230)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7204 , PLPSAL-PWY , PWY-7282</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PYRIDOXAL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PYRIDOXAL_PHOSPHATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PYRIMSYN3__45__RXN" name="PYRIMSYN3-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_006870)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-7357 , PWY-6890 , PWY-6910 , PWY-7356 , PWY-7282</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMINO__45__HYDROXYMETHYL__45__METHYL__45__PYR__45__P_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMINO__45__HYDROXYMETHYL__45__METHYLPYRIMIDINE__45__PP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PYRNUTRANSHYDROGEN__45__RXN" name="NAD(P)+ transhydrogenase (AB-specific)" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_007000) or (Ec-21_003320)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5083</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PYRROLINECARBREDUCT__45__RXN" name="pyrroline-5-carboxylate reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-07_007350) or (Ec-05_006410) or (Ec-07_007360) or (Ec-07_007340) or (Ec-03_004680)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6344 , ARG-PRO-PWY , PWY-4981 , PROSYN-PWY , PWY-3341</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_NADH__45__P__45__OR__45__NOP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__DELTA1__45__PYRROLINE_5__45__CARBOXYLATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PRO_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD__45__P__45__OR__45__NOP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PYRUFLAVREDUCT__45__RXN" name="Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-18_003420) or (Ec-15_004230) or (Ec-23_002710)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6583 , CENTFERM-PWY , P42-PWY , PWY-5483 , PWY-6587 , GLUDEG-II-PWY , P23-PWY , PWY-6863 , PWY-6876 , PWY-5600 , PWY-5538 , PWY-5493 , PWY-5392 , PWY-6588 , PWY-5497 , NPGLUCAT-PWY , PWY-6142 , P142-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PYRUVATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Oxidized__45__ferredoxins_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Reduced__45__ferredoxins_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACETYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PYRUVATE__45__CARBOXYLASE__45__RXN" name="pyruvate carboxylase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_001890)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5750 , P42-PWY , PWY-6146 , PWY66-399 , PWY-6142</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_HCO3_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PYRUVATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXALACETIC_ACID_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PYRUVATEORTHOPHOSPHATE__45__DIKINASE__45__RXN" name="Pyruvate/Phosphoenolpyruvate kinase-like domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-18_001310)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6549 , PWY-7115 , PWY-7117 , PWY-241</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PYRUVATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PHOSPHO__45__ENOL__45__PYRUVATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_PYRUVDEH__45__RXN" name="PYRUVDEH-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_010530) or (Ec-18_000080) or (Ec-25_000140) or (Ec-27_004160) or (Ec-25_000020) or (Ec-23_002710) or (Ec-18_003420) or (Ec-27_000530)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-7218 , PWY-7384 , PWY-5482 , GLYCOLYSIS-TCA-GLYOX-BYPASS , PWY-6886 , PWY-5537</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PYRUVATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ACETYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_QUEUOSINE__45__TRNA__45__RIBOSYLTRANSFERASE__45__RXN" name="queuine tRNA-ribosyltransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_005570)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_QUEUINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Guanine34__45__in__45__tRNAs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_tRNAs__45__with__45__queuine_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GUANINE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_QUINATE__45__5__45__DEHYDROGENASE__45__RXN" name="QUINATE-5-DEHYDROGENASE-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6416</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_QUINATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_DEHYDROQUINATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_QUINOLINATE__45__SYNTHA__45__RXN" name="quinolinate synthetase A" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-25_002400)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PYRIDNUCSYN-PWY , PWY-5316 , PWY-7342</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_DIHYDROXY__45__ACETONE__45__PHOSPHATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_IMINOASPARTATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_QUINOLINATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_QUINOLINATE__45__SYNTHE__45__MULTI__45__RXN" name="Quinolinate synthetase A" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-25_002400)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_L__45__ASPARTATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DIHYDROXY__45__ACETONE__45__PHOSPHATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HYDROGEN__45__PEROXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_QUINOLINATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_QUINOPRIBOTRANS__45__RXN" name="nicotinate-nucleotide diphosphorylase (carboxylating)" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_002350) or (Ec-09_003390) or (Ec-05_000790)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PYRIDNUCSYN-PWY , PWY-5316 , PWY-7342 , PWY-5653</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_PRPP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_QUINOLINATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NICOTINATE_NUCLEOTIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_R07063" name="R07063" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Donor__45__H2_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_LINOLEIC_ACID_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__8117_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_Acceptor_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_R07861" name="R07861" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_LINOLENIC_ACID_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Donor__45__H2_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_CPD__45__12653_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Acceptor_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_R08184" name="R08184" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__10279_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DOCOSANOATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_R08190" name="R08190" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__12646_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Eicosadienoates_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_R147__45__RXN" name="1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-20_000070)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-4361</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__85_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__479_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FORMATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_R15__45__RXN__45__MET__47__P__45__HYDROXY__45__PHENYLPYRUVATE__47____47__CPD__45__479__47__TYR__46__42__46__" name="R15-RXN-MET/P-HYDROXY-PHENYLPYRUVATE//CPD-479/TYR.42." reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_P__45__HYDROXY__45__PHENYLPYRUVATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MET_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__479_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_TYR_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_R163__45__RXN" name="R163-RXN" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-14_006130)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PAPS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_APS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_R222__45__RXN" name="1-octanal dehydrogenase (NAD+)" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: P221-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__371_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__195_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_R223__45__RXN" name="octanoyl-CoA ligase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_003710) or (Ec-12_008720) or (Ec-01_001560) or (Ec-02_006430)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6920 , P221-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__195_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__196_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_R311__45__RXN" name="Acrylamidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_009020) or (Ec-02_005910)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7308</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ACRYLAMIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACRYLATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_R344__45__RXN" name="cob(I)yrinic acid a,c-diamide adenosyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_010830)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5508 , PWY-5509</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__694_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_P3I_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__690_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RETINOL__45__DEHYDROGENASE__45__RXN" name="all-trans-retinol dehydrogenase (NAD)" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_001960)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__13524_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_RETINAL_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RETINYL__45__PALMITATE__45__ESTERASE__45__RXN" name="retinyl-palmitate esterase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_004830) or (Ec-16_002070) or (Ec-19_001900) or (Ec-12_006850) or (Ec-25_000250)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CHOCOLA_A_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Retinols_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PALMITATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RIB5PISOM__45__RXN" name="Ribose 5-phosphate isomerase, type A" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-08_003540)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: P124-PWY , PWY-5723 , NONOXIPENT-PWY , PWY-1861 , P185-PWY , CALVIN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_RIBOSE__45__5P_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_RIBULOSE__45__5P_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RIBITOL__45__2__45__DEHYDROGENASE__45__RXN" name="Glucose/ribitol dehydrogenase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-20_003500) or (Ec-27_002470) or (Ec-09_001020) or (Ec-00_004550) or (Ec-12_007650) or (Ec-01_004330) or (Ec-18_004080)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: RIBITOLUTIL-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_RIBITOL_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_D__45__RIBULOSE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RIBOFLAVIN__45__SYN__45__RXN" name="Riboflavin synthase, putative" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-00_004570)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6168 , PWY-6167 , RIBOSYN2-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_DIMETHYL__45__D__45__RIBITYL__45__LUMAZINE_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMINO__45__RIBOSYLAMINO__45__1H__45__3H__45__PYR__45__DIONE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_RIBOFLAVIN_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RIBOFLAVINKIN__45__RXN" name="riboflavin kinase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-04_004280) or (Ec-14_005260) or (Ec-10_002950) or (Ec-04_001490)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6168 , PWY-5523 , RIBOSYN2-PWY , PWY66-366</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_RIBOFLAVIN_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FMN_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RIBOFLAVINSYNDEAM__45__RXN" name="diaminohydroxyphosphoribosylaminopyrimidine deaminase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-07_005770)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: RIBOSYN2-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DIAMINO__45__OH__45__PHOSPHORIBOSYLAMINO__45__PYR_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__602_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RIBOFLAVINSYNREDUC__45__RXN" name="5-amino-6-(5-phosphoribosylamino)uracil reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-23_000290) or (Ec-07_005770) or (Ec-05_004210)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: RIBOSYN2-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__602_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__1086_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RIBOKIN__45__RXN" name="ribokinase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-07_005840) or (Ec-01_005220)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: RIBOKIN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__10330_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__15318_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RIBONUCLEOSIDE__45__DIP__45__REDUCTI__45__RXN" name="ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_000440) or (Ec-21_002920) or (Ec-06_005570) or (Ec-11_002170) or (Ec-06_005120)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Red__45__Thioredoxin_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Ribonucleoside__45__Diphosphates_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Deoxy__45__Ribonucleoside__45__Diphosphates_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Ox__45__Thioredoxin_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RIBONUCLEOSIDE__45__DIP__45__REDUCTII__45__RXN" name="Ribonucleoside-diphosphate reductase small chain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_000440) or (Ec-21_002920) or (Ec-06_005570) or (Ec-11_002170) or (Ec-06_005120)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY0-166</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Reduced__45__NrdH__45__Proteins_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CDP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DCDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Oxidized__45__NrdH__45__Proteins_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RIBULOSE__45__BISPHOSPHATE__45__CARBOXYLASE__45__RXN" name="putative ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_007560)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: CALVIN-PWY , PWY-5723 , PWY-5532</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_D__45__RIBULOSE__45__15__45__P2_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_G3P_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RIBULP3EPIM__45__RXN" name="Ribulose-phosphate 3-epimerase-like" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-07_002390) or (Ec-27_003930)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: P124-PWY , P122-PWY , PWY-5723 , NONOXIPENT-PWY , PWY-1861 , P185-PWY , CALVIN-PWY , P21-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_RIBULOSE__45__5P_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_XYLULOSE__45__5__45__PHOSPHATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RNA__45__3__45__PHOSPHATE__45__CYCLASE__45__RXN" name="RNA 3&apos;-terminal phosphate cyclase domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_001150)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_3__45__Prime__45__Phosphate__45__Terminated__45__RNAs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Cyclic__45__Phosphate__45__Terminated__45__RNAs_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RNA__45__DIRECTED__45__DNA__45__POLYMERASE__45__RXN" name="RNA-directed DNA polymerase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-11_003690) or (Ec-00_007680)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_DNA__45__N_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Deoxy__45__Ribonucleoside__45__Triphosphates_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DNA__45__N_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RNA__45__DIRECTED__45__RNA__45__POLYMERASE__45__RXN" name="RNA-directed RNA polymerase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-14_005680) or (Ec-14_005710)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_RNA__45__Holder_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Nucleoside__45__Triphosphates_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_RNA__45__Holder_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RNA__45__LIGASE__45__ATP__45__RXN" name="RNA ligase/cyclic nucleotide phosphodiesterase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_000990)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Ribonucleotides_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Ribonucleotides_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RR__45__BUTANEDIOL__45__DEHYDROGENASE__45__RXN" name="RR-BUTANEDIOL-DEHYDROGENASE-RXN" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_002060)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-5951 , PWY3O-246</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_BUTANEDIOL_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__10353_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10" name="argininosuccinate synthetase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_001870)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_L__45__ASPARTATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_O__45__UREIDOHOMOSERINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CANAVANINOSUCCINATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10034" name="RXN-10034" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6689</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__10794_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADENOSINE_DIPHOSPHATE_RIBOSE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10038" name="RXN-10038" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6281</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__seryl__45__SEC__45__tRNAs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_O__45__phospho__45__L__45__seryl__45__tRNASecs_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10039" name="O-phosphoseryl-tRNA(Sec) selenium transferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-14_006440)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6281</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_SEPO3_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_O__45__phospho__45__L__45__seryl__45__tRNASecs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pi_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_Charged__45__SEC__45__tRNAs_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10059" name="Beta-ketoacyl synthase, N-terminal" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_000640) or (Ec-12_000650) or (Ec-27_003480) or (Ec-27_002090)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWYG-321 , PWY-6113</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_MALONYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Lignoceroyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_3__45__oxo__45__cerotoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10060" name="NAD(P)-binding domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_007100)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWYG-321 , PWY-6113</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__oxo__45__cerotoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_R__45__3__45__hydroxycerotoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10062" name="trans-hexacos-2-enoyl-[acp] reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_002470)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWYG-321 , PWY-6113</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Trans__45__D2__45__hexacos__45__2__45__enoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Cerotoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10089" name="imidazole acetaldehyde reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-11_002450)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-6181</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_IMIDAZOLE_ACETALDEHYDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_4__45__IMIDAZOLEACETATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10462" name="Glycerol-3-phosphate O-acyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_003960)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY0-1319</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GLYCEROL__45__3P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACYL__45__ACP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ACYL__45__SN__45__GLYCEROL__45__3P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10614" name="Aryl sulfotransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_007310) or (Ec-06_007300) or (Ec-06_007320) or (Ec-26_003630) or (Ec-00_005410)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6261</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PAPS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__THYROXINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__5__45__ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__11407_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10615" name="P-loop containing nucleoside triphosphate hydrolase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_007310) or (Ec-06_007300) or (Ec-06_007320) or (Ec-26_003630) or (Ec-00_005410)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6261</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PAPS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_LIOTHYRONINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__11408_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__5__45__ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10625" name="Geranylgeranyl reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_003520)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADPH_c" stoichiometry="3" constant="false"/>
          <speciesReference species="M_GERANYLGERANYL__45__PP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="3" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PHYTYL__45__PYROPHOSPHATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="3" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10642" name="Uroporphyrinogen decarboxylase, chloroplast precursor" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-24_000650) or (Ec-24_000620) or (Ec-01_000360)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="4" constant="false"/>
          <speciesReference species="M_CPD__45__11444_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_COPROPORPHYRINOGEN_I_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="4" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10654" name="Beta-ketoacyl synthase, N-terminal" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_000640) or (Ec-12_000650) or (Ec-27_003480) or (Ec-27_002090)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6282</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Cis__45__Delta5__45__dodecenoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MALONYL__45__ACP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ACP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__oxo__45__cis__45__D7__45__tetradecenoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10655" name="NAD(P)-binding domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_007100)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6282</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__oxo__45__cis__45__D7__45__tetradecenoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__hydroxy__45__cis__45__D7__45__tetraecenoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10656" name="RXN-10656" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
            <p>SUBSYSTEM: PWY-6282</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_3__45__hydroxy__45__cis__45__D7__45__tetraecenoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Trans__45__D3__45__cis__45__D7__45__tetradecenoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10657" name="Glucose/ribitol dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_002470)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6282</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Trans__45__D3__45__cis__45__D7__45__tetradecenoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Cis__45__Delta7__45__tetradecenoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10658" name="3-oxoacyl-[acyl-carrier-protein] synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_000640) or (Ec-12_000650) or (Ec-27_003480) or (Ec-27_002090)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6282</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MALONYL__45__ACP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Cis__45__Delta7__45__tetradecenoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ACP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__oxo__45__cis__45__D9__45__hexadecenoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10659" name="NAD(P)-binding domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_007100)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6282</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__oxo__45__cis__45__D9__45__hexadecenoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__hydroxy__45__cis__45__D9__45__hexaecenoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10660" name="RXN-10660" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
            <p>SUBSYSTEM: PWY-6282</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_3__45__hydroxy__45__cis__45__D9__45__hexaecenoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Trans__45__D3__45__cis__45__D9__45__hexadecenoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10661" name="Glucose/ribitol dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_002470)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6282</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Trans__45__D3__45__cis__45__D9__45__hexadecenoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Palmitoleoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10662" name="RXN-10662" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__10269_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__9245_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10664" name="stearoyl-CoA desaturase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_001950)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5987</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PALMITYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FERROCYTOCHROME__45__B5_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_FERRICYTOCHROME__45__B5_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_CPD__45__10269_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10696" name="Acyl-CoA oxidase/dehydrogenase, central domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_004320) or (Ec-22_002920) or (Ec-08_006390)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-735</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__11517_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__11518_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HYDROGEN__45__PEROXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10697" name="ClpP/crotonase-like domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_001380) or (Ec-16_003560) or (Ec-14_006530) or (Ec-16_001250)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-735</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__11518_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__11519_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10698" name="6-phosphogluconate dehydrogenase, C-terminal-like" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_005290) or (Ec-14_006530)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-735</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__11519_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__11520_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10702" name="6-phosphogluconate dehydrogenase, C-terminal-like" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_005290) or (Ec-14_006530)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-735</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__11523_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__11524_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10703" name="6-phosphogluconate dehydrogenase, C-terminal-like" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_005290) or (Ec-14_006530)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-735</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__11527_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__11528_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10704" name="Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_001250) or (Ec-16_003560) or (Ec-06_001380) or (Ec-14_006530)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-735</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__11522_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__11523_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10705" name="ClpP/crotonase-like domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_001250) or (Ec-16_003560) or (Ec-06_001380) or (Ec-14_006530)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-735</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__11526_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__11527_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10706" name="acyl-CoA oxidase, partial" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_004320) or (Ec-22_002920) or (Ec-08_006390)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-735</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__11521_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_HYDROGEN__45__PEROXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__11522_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10707" name="acyl-CoA oxidase, partial" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_004320) or (Ec-22_002920) or (Ec-08_006390)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-735</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__11525_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_HYDROGEN__45__PEROXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__11526_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10711" name="Phospholipase/carboxylesterase/thioesterase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_004830) or (Ec-16_002070) or (Ec-19_001900) or (Ec-12_006850) or (Ec-25_000250)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6303</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__10546_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_METOH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_INDOLE_ACETATE_AUXIN_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10715" name="RXN-10715" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-11_002450)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-6307</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_INDOLE_ACETALDEHYDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_INDOLE_ACETATE_AUXIN_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10720" name="RXN-10720" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6309</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__476_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_KYNURENATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10721" name="3-hydroxy-L-kynurenine-oxoglutarate transaminase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-00_001230)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6309</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_3__45__HYDROXY__45__L__45__KYNURENINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__11552_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLT_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10722" name="RXN-10722" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6309</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__11552_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_XANTHURENATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10727" name="myristoyl-ACP hydrolase activity" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Myristoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__7836_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10734" name="Type III Polyketide Synthase (phloroglucinol synthase)" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_004580) or (Ec-07_006660)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6312</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="7" constant="false"/>
          <speciesReference species="M_MALONYL__45__COA_c" stoichiometry="8" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CO__45__A_c" stoichiometry="8" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="8" constant="false"/>
          <speciesReference species="M_CPD__45__11555_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10745" name="FAD-binding 8" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_004000) or (Ec-19_004010) or (Ec-01_003990)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH__45__P__45__OR__45__NOP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_HYDROGEN__45__PEROXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD__45__P__45__OR__45__NOP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10767" name="carboxylic ester hydrolase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_004830) or (Ec-16_002070) or (Ec-19_001900) or (Ec-12_006850) or (Ec-25_000250)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Methyl__45__Jasmonates_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Jasmonic__45__Acids_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_METOH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10769" name="Beta-glucosidase, family GH3" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-20_004800) or (Ec-07_005240) or (Ec-07_001850) or (Ec-26_002410) or (Ec-04_002190)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__11641_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Glucopyranose_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__182_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10773" name="Beta-glucosidase, family GH1" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-20_004800) or (Ec-07_005240) or (Ec-07_001850) or (Ec-26_002410) or (Ec-04_002190)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6788</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CELLOBIOSE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Glucopyranose_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10777" name="Aryl sulfotransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_007310) or (Ec-06_007300) or (Ec-06_007320) or (Ec-26_003630) or (Ec-00_005410)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6313</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_SEROTONIN_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PAPS_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_3__45__5__45__ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__11665_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10780" name="RXN-10780" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-11_002450)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-6313</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_5__45__HYDROXYINDOLE_ACETALDEHYDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_5__45__HYDROXYINDOLE_ACETATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10782" name="Sulfotransferase domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_007310) or (Ec-06_007300) or (Ec-06_007320) or (Ec-26_003630) or (Ec-00_005410)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6313</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PAPS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__11671_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_3__45__5__45__ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__11674_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10811" name="RXN-10811" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PANTETHEINE__45__P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_3__45__5__45__ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10814" name="Aspartate Aminotransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_007480) or (Ec-03_003270) or (Ec-23_003500)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6318</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PHE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_GLT_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PHENYL__45__PYRUVATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10815" name="2-oxo-3-phenylpropanoate dioxygenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-23_003630)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6318</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PHENYL__45__PYRUVATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__11495_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10821" name="RXN-10821" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-25_001550)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-6318</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__207_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLY_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__11715_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10827" name="carboxyvinyl-carboxyphosphonate phosphorylmutase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_002250)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7769 , PWY-6322</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_1__45__CARBOXYVINYL__45__CARBOXYPHOSPHONATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__11740_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10828" name="carboxyvinyl-carboxyphosphonate phosphorylmutase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_002250)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7769 , PWY-6322</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__11740_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_3__45__HYDROHYDROXYPHOSPHORYLPYRUVATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10851" name="RXN-10851" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5294</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__11281_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_Donor__45__H2_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Acceptor_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__11763_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HS_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10855" name="RXN-10855" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY66-425</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_CPD__45__7682_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD__45__P__45__OR__45__NOP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADH__45__P__45__OR__45__NOP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__468_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10862" name="Apyrase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_003360) or (Ec-02_001970)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10911" name="RXN-10911" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_001960)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-6342</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DIHYDROXYPHENYLGLYCOLALDEHYDE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__11878_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10919" name="RXN-10919" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_001480) or (Ec-04_001280)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SINAPATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SINAPOYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10938" name="RXN-10938" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6352</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_1__45__PHOSPHATIDYL__45__1D__45__MYO__45__INOSITOL__45__35__45__BISPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__177_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10939" name="RXN-10939" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-14_006130)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_INOSITOL__45__1__45__3__45__4__45__TRIPHOSPHATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_D__45__MYO__45__INOSITOL__45__34__45__BISPHOSPHATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10949" name="Inositol monophosphatase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_005670)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Myo__45__inositol__45__monophosphates_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MYO__45__INOSITOL_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10952" name="Inositol monophosphatase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_004120) or (Ec-02_005670)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6363</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_D__45__MYO__45__INOSITOL__45__4__45__PHOSPHATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MYO__45__INOSITOL_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10953" name="Inositol monophosphatase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_005670)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__6701_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_MYO__45__INOSITOL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10954" name="Inositol monophosphatase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_005670)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__6702_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MYO__45__INOSITOL_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10955" name="RXN-10955" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6365</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__1107_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__178_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10981" name="RXN-10981" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6370</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ASCORBATE_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_Acceptor_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Donor__45__H2_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__318_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__10994" name="holo-[acyl-carrier-protein] synthase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_004620) or (Ec-01_000130)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_VibB_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_3__45__5__45__ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_holo__45__VibB_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__1101" name="RXN-1101" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_001350) or (Ec-23_001220) or (Ec-12_005240)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-361</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_P__45__COUMAROYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_COUMARALDEHYDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__1102" name="RXN-1102" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-18_002860)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-361</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_COUMARALDEHYDE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_COUMARYL__45__ALCOHOL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11026" name="acyl-CoA oxidase, partial" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_004320) or (Ec-22_002920) or (Ec-08_006390)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY66-391 , PWY-7288 , PWY-5136</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Saturated__45__Fatty__45__Acyl__45__CoA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_TRANS__45__D2__45__ENOYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HYDROGEN__45__PEROXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__1104" name="Protein of unknown function DUF858, methyltransferase-like" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_004720)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-2181 , PWY-1121 , PWY-7186 , PWY-7498</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__676_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_S__45__ADENOSYLMETHIONINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADENOSYL__45__HOMO__45__CYS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FERULIC__45__ACID_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11056" name="Monooxygenase, FAD-binding" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_003280) or (Ec-00_001320) or (Ec-01_010880)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6398</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Red__45__NADPH__45__Hemoprotein__45__Reductases_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_N__45__ACETYL__45__5__45__METHOXY__45__TRYPTAMINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Ox__45__NADPH__45__Hemoprotein__45__Reductases_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__12014_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11057" name="Aromatic-ring hydroxylase-like" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_003280) or (Ec-00_001320) or (Ec-01_010880)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6398</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Red__45__NADPH__45__Hemoprotein__45__Reductases_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_N__45__ACETYL__45__5__45__METHOXY__45__TRYPTAMINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_N__45__ACETYL__45__SEROTONIN_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FORMALDEHYDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Ox__45__NADPH__45__Hemoprotein__45__Reductases_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11058" name="P-loop containing nucleoside triphosphate hydrolase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_007310) or (Ec-06_007300) or (Ec-06_007320) or (Ec-26_003630) or (Ec-00_005410)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6398</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PAPS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__12014_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__5__45__ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__12015_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11059" name="Aryl sulfotransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_007310) or (Ec-06_007300) or (Ec-06_007320) or (Ec-26_003630) or (Ec-00_005410)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6398</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PAPS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_N__45__ACETYL__45__SEROTONIN_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__12017_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__5__45__ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__1106" name="RXN-1106" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_001350) or (Ec-23_001220) or (Ec-12_005240)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-361 , PWY-6027</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FERULOYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CONIFERYL__45__ALDEHYDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11109" name="RNA helicase family protein" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_002420) or (Ec-07_001080)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Wound__45__RNA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Unwound__45__RNA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11135" name="DNA helicase (DNA repair), Rad3 type" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_002340) or (Ec-15_001630)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Double__45__helix__45__DNA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Unwound__45__DNA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11152" name="Lactonase domain-containing protein" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_002500) or (Ec-21_001990)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6415</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD0__45__1083_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__330_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11195" name="NADH:cytochrome b5 reductase (CBR)" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-07_006860) or (Ec-09_002720)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Ferrihemoglobins_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Ferrohemoglobins_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__1121" name="RXN-1121" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-07_001290) or (Ec-00_005820) or (Ec-00_005850) or (Ec-10_006240)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-2181</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_FERULIC__45__ACID_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_5__45__HYDROXY__45__FERULIC__45__ACID_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11210" name="RXN-11210" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_003010)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-6430</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__UREIDO__45__ISOBUTYRATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__471_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11213" name="Methylmalonate Semialdehyde Dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_003810) or (Ec-06_003440)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: VALDEG-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CH3__45__MALONATE__45__S__45__ALD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROPIONYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HCO3_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__1124" name="RXN-1124" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_001350) or (Ec-23_001220) or (Ec-12_005240)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_SINAPOYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SINAPALDEHYDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11244" name="ClpP/crotonase-like domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_001380) or (Ec-16_003560) or (Ec-14_006530) or (Ec-16_001250)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7046 , PWY-6435</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_P__45__COUMAROYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__12199_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11245" name="3-hydroxyacyl-CoA dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_005290) or (Ec-14_006530)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6435</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__12199_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__10600_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__1125" name="RXN-1125" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-18_002860)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-361</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SINAPALDEHYDE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_SINAPYL__45__ALCOHOL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__1126" name="RXN-1126" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_001480) or (Ec-04_001280)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-1121 , PWY-6673 , PWY-7398</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__676_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CAFFEOYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__113" name="RXN-113" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_002750) or (Ec-19_002760) or (Ec-08_003510)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-102</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD1F__45__140_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__236_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SUC_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11329" name="Bromoperoxidase/chloroperoxidase, C-terminal" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-11_001530) or (Ec-24_002370) or (Ec-04_004690) or (Ec-24_002030)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_RH__45__Group_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__12287_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HYDROGEN__45__PEROXIDE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_Bromide_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11334" name="Soluble quinoprotein glucose/sorbosone dehydrogenase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-13_003170)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Glucopyranose_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Acceptor_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_GLC__45__D__45__LACTONE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Donor__45__H2_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11347" name="phospho-N-acetylmuramoyl-pentapeptide-transferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-07_007020)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6470</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__12258_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__9646_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__12303_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_UMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11356" name="zeta-carotene desaturase, chloroplast precursor" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_004660)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6475</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__7526_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ETR__45__Quinones_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ETR__45__Quinols_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__7524_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11357" name="9,9&amp;prime;-dicis-&amp;zeta;-carotene desaturase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_004660)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6475</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ETR__45__Quinones_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__7524_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ETR__45__Quinols_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__7496_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11361" name="molybdopterin-synthase adenylyltransferase / sulfurtransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-22_001380)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6823</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MPT__45__Synthases_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Carboxyadenylated__45__MPT__45__synthases_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11368" name="4-hydroxybenzoate nonaprenyltransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-00_007360)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_4__45__hydroxybenzoate_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Polyisoprenyl__45__Diphosphates_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_4__45__Hydroxy__45__3__45__polyprenylbenzoates_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11369" name="RXN-11369" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6481</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_DOPAQUINONE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__8652_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_L__45__DOPACHROME_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__DIHYDROXY__45__PHENYLALANINE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11370" name="Diphthine synthase, putative" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_006260)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_S__45__ADENOSYLMETHIONINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__3__45__CARBOXY__45__3__45__AMINOPROPYL__45__L__45__HISTIDINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADENOSYL__45__HOMO__45__CYS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__3__45__CARBOXY__45__3__45__METHYLAMMONIOPROPYL__45__L__45___c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11373" name="diphthamide synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_006260)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_S__45__ADENOSYLMETHIONINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__carboxy__45__3__45__dimethylammonio__45__propyl__45__L__45__his_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADENOSYL__45__HOMO__45__CYS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DIPHTINE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11374" name="Diphthine synthase, putative" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_006260)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_2__45__3__45__CARBOXY__45__3__45__METHYLAMMONIOPROPYL__45__L__45___c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_S__45__ADENOSYLMETHIONINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_3__45__carboxy__45__3__45__dimethylammonio__45__propyl__45__L__45__his_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADENOSYL__45__HOMO__45__CYS_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11375" name="Ceramidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_006010)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6483</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Ceramides_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Sphingoids_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Fatty__45__Acids_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11403" name="RXN-11403" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6498</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_L__45__DOPACHROME_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DIHYDROXYINDOLE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11409" name="RXN-11409" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6502</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GTP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__12377_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__12366_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11410" name="RXN-11410" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6502</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__12377_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_DGTP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD0__45__1905_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__1143" name="Protein of unknown function DUF858, methyltransferase-like" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_004720)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-361 , PWY-5168</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_S__45__ADENOSYLMETHIONINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_5__45__HYDROXY__45__CONIFERALDEHYDE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_SINAPALDEHYDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADENOSYL__45__HOMO__45__CYS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11474" name="3-oxo-glutaryl-[acp] methyl ester synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_000640) or (Ec-12_000650) or (Ec-27_003480) or (Ec-27_002090)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6519</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MALONYL__45__ACP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Malonyl__45__acp__45__methyl__45__ester_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__Ketoglutaryl__45__ACP__45__methyl__45__ester_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11476" name="3-oxo-glutaryl-[acp] methyl ester reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_007100)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6519</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__Ketoglutaryl__45__ACP__45__methyl__45__ester_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__Hydroxyglutaryl__45__ACP__45__methyl__45__ester_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11478" name="Glucose/ribitol dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_002470)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6519</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Enoylglutaryl__45__ACP__45__methyl__45__esters_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Glutaryl__45__ACP__45__methyl__45__esters_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11479" name="Beta-ketoacyl synthase, N-terminal" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_000640) or (Ec-12_000650) or (Ec-27_003480) or (Ec-27_002090)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6519</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_MALONYL__45__ACP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Glutaryl__45__ACP__45__methyl__45__esters_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ACP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__Ketopimeloyl__45__ACP__45__methyl__45__esters_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11480" name="NAD(P)-binding domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_007100)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6519</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_3__45__Ketopimeloyl__45__ACP__45__methyl__45__esters_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_3__45__hydroxypimeloyl__45__ACP__45__methyl__45__esters_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11482" name="Glucose/ribitol dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_002470)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6519</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Enoylpimeloyl__45__ACP__45__methyl__45__esters_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pimeloyl__45__ACP__45__methyl__45__esters_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11484" name="putative 8-amino-7-oxononanoate synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-04_002200)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7147 , PWY-6519</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_L__45__ALPHA__45__ALANINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pimeloyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_8__45__AMINO__45__7__45__OXONONANOATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11486" name="solanesyl diphosphate synthase-like protein" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-17_003520)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6520</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GERANYLGERANYL__45__PP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DELTA3__45__ISOPENTENYL__45__PP_c" stoichiometry="5" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_SOLANESYL__45__PYROPHOSPHATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="5" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__115" name="Non-haem dioxygenase N-terminal domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_002750) or (Ec-19_002760) or (Ec-08_003510)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-102</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD1F__45__139_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_SUC_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__204_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11501" name="Alpha-galactosidase, family GH36" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-17_000840) or (Ec-26_006290)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6527</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__170_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__1099_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ALPHA__45__D__45__GALACTOSE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11519" name="RXN-11519" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-20_000230) or (Ec-20_000210)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-6632</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__7__45__DIMETHYLXANTHINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__12482_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HYDROGEN__45__PEROXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11520" name="RXN-11520" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-20_000230) or (Ec-20_000210)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-6632</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_1__45__7__45__DIMETHYLXANTHINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__12483_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HYDROGEN__45__PEROXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11521" name="RXN-11521" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-20_000230) or (Ec-20_000210)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-6632</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_7__45__METHYLXANTHINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__12481_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HYDROGEN__45__PEROXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11662" name="6-phosphogluconate dehydrogenase, C-terminal-like" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_005290) or (Ec-14_006530)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6583 , CENTFERM-PWY , PWY-6883 , PWY-7779 , PWY-7778 , P162-PWY , PWY-5177 , PWY-6863 , PWY-5789 , PWY-7401 , PWY-7216</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_S__45__3__45__HYDROXYBUTANOYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACETOACETYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11667" name="(S)-3-hydroxybutanoyl-CoA dehydrogenase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-17_000320) or (Ec-14_006530)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6583 , CENTFERM-PWY , PWY-6883 , P162-PWY , PWY-5177 , PWY-6863 , PWY-5789 , PWY-7401 , P3-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_S__45__3__45__HYDROXYBUTANOYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CROTONYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11693" name="separin" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_011880)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_RAD21__45__Cohesin__45__Subunits_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Peptides__45__holder_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11717" name="Dihydroxy-acid/6-phosphogluconate dehydratase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_000220)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6627</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__12673_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__11020_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11737" name="Aspartate Aminotransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_007480) or (Ec-03_003270) or (Ec-23_003500)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6642 , PWY-6638 , PWY-6643</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__CYSTEATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__380_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLT_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11784" name="primary amine oxidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-15_002910) or (Ec-15_002920)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CADAVERINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_HYDROGEN__45__PEROXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__12763_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11811" name="RXN-11811" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_AMMONIA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11832" name="Adenylate kinase/UMP-CMP kinase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-07_003680) or (Ec-14_004920) or (Ec-16_005090) or (Ec-06_003080)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7205</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CMP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11838" name="Pseudouridine synthase, RluC/RluD" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-04_001540)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_23S__45__rRNA__45__uridine955__45__2504__45__2580_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_23S__45__rRNA__45__pseudouridine955__45__2504__45__2580_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11876" name="RXN-11876" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Esi0169_0047)</p>
            <p>CATEGORIES: MANUAL</p>
            <p>SUBSYSTEM: PWY-8191</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__12850_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__12852_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11878" name="RXN-11878" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Esi0073_0082)</p>
            <p>CATEGORIES: MANUAL</p>
            <p>SUBSYSTEM: PWY-8191</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__12853_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_4__45__METHYL__45__824__45__CHOLESTADIENOL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11881" name="4&amp;alpha;,14&amp;alpha;-dimethyl-5&amp;alpha;-cholesta-8,24-dien-3&amp;beta;-ol 14-demethylase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_006240) or (Esi0006_0200)</p>
            <p>CATEGORIES: ANNOTATION and MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__12852_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="3" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="3" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_FORMATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__12853_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="4" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="3" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11887" name="RXN-11887" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Esi0003_0314)</p>
            <p>CATEGORIES: MANUAL</p>
            <p>SUBSYSTEM: PWY-8191 , PWY66-4</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_5__45__ALPHA__45__CHOLESTA__45__724__45__DIEN__45__3__45__BETA__45__OL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FERROCYTOCHROME__45__B5_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__8646_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FERRICYTOCHROME__45__B5_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11917" name="7-methyl-3-oxo-6-octenoyl-CoA:acetyl-CoA C-acyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_003940)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-6672</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__12897_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__12902_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACETYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11919" name="(2E)-5-methylhexa-2,4-dienoyl-CoA hydratase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-17_000320)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-6672</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__12904_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__12905_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11921" name="3-methylcrotonyl-CoA:acetyl-CoA C-acyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_003940)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-6672</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__12906_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_3__45__METHYL__45__CROTONYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACETYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11989" name="Carotenoid oxygenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_002830) or (Ec-06_002810) or (Ec-20_002250) or (Ec-18_002140) or (Ec-21_004930)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6681</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__7953_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__12935_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PRENAL_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__11999" name="Carotenoid oxygenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_002810) or (Ec-20_002250) or (Ec-06_002830) or (Ec-18_002140) or (Ec-21_004930)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6681</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__12932_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__12936_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12002" name="Adenylate kinase/UMP-CMP kinase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-07_003680) or (Ec-27_003730) or (Ec-24_000610) or (Ec-14_004920) or (Ec-06_003080) or (Ec-16_005090)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7176</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_UMP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_UDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12055" name="ADP-ribose 1&quot;,2&quot;-cyclic phosphate 2&apos;&apos;-phosphodiesterase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6689</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__9007_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__10794_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12056" name="RXN-12056" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6689</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Pre__45__tRNA__45__3__45__prime__45__half__45__molecules_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_Pre__45__tRNA__45__5__45__prime__45__half__45__molecules_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_2__45__phospho__45__ligated__45__tRNA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12086" name="triglyceride lipase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-11_004280) or (Ec-24_003610) or (Ec-15_000020) or (Ec-27_003400) or (Ec-23_002290) or (Ec-23_002340) or (Ec-16_003710) or (Ec-15_000230) or (Ec-21_004100) or (Ec-15_000160) or (Ec-15_000190) or (Ec-06_004240) or (Ec-11_001230) or (Ec-02_001660) or (Ec-15_000240) or (Ec-06_003310) or (Ec-23_002330) or (Ec-06_005070) or (Ec-16_000950)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__13014_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_BUTYRIC_ACID_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__13040_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12088" name="Alpha-galactosidase, family GH36" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-17_000840) or (Ec-26_006290)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Alpha__45__D__45__Galactosides_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ALPHA__45__D__45__GALACTOSE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Non__45__Galactosylated__45__Galactose__45__Acceptors_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12178" name="Glycosyl hydrolase, family 88" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_002970) or (Ec-02_002980)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7646 , PWY-6572</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__36_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__13122_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_N__45__acetyl__45__D__45__galactosamine_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12184" name="long chain acyl-CoA synthetase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_008720) or (Ec-02_006430) or (Ec-01_001560) or (Ec-03_003710)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6733</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__17637_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__17638_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12195" name="nucleoside-triphosphatase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_004860) or (Ec-03_001180) or (Ec-01_003690) or (Ec-17_000870) or (Ec-06_005470) or (Ec-18_004660) or (Ec-02_005730) or (Ec-28_000420) or (Ec-05_005340)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6545 , PWY-7198 , PWY-7210 , PWY-7184</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CTP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12196" name="nucleoside-triphosphatase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_004860) or (Ec-03_001180) or (Ec-01_003690) or (Ec-17_000870) or (Ec-06_005470) or (Ec-18_004660) or (Ec-02_005730) or (Ec-28_000420) or (Ec-05_005340)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_UTP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_UDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12197" name="Apyrase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_001970)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_UDP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_UMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12198" name="Apyrase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_001970)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12199" name="Apyrase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_001970)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7185 , PWY-7177</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_UTP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_UMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12200" name="Apyrase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_001970)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7185 , PWY-7177</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_CTP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_CMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__1223" name="UDP-sulfoquinovose synthase, plastid precursor" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-15_003040)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWYQT-4427</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SO3_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__12575_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_UDP__45__SULFOQUINOVOSE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__1224" name="RXN-1224" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWYQT-4427</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_UDP__45__SULFOQUINOVOSE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DIACYLGLYCEROL_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_UDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SULFOQUINOVOSYLDIACYLGLYCEROL_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12242" name="zeta-carotene desaturase, chloroplast precursor" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_004660)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ETR__45__Quinones_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_CPD__45__7526_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__7496_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ETR__45__Quinols_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__1225" name="Digalactosyldiacylglycerol synthase, family GT4" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_002430) or (Ec-07_005410) or (Ec-04_003640)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7666 , PWY-401</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__14553_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_D__45__Galactosyl__45__12__45__diacyl__45__glycerols_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Galactosyl__45__galactosyl__45__diacyl__45__glycerols_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_UDP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12252" name="carboxylic ester hydrolase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_004830) or (Ec-16_002070) or (Ec-19_001900) or (Ec-12_006850) or (Ec-25_000250)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__13174_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__13172_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__173_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12263" name="Isopentenyl-diphosphate delta-isomerase type 1 fused to squalene synthase; probably two separate ORFs" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-11_001030)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5875 , PWY-6105 , PWY-7072 , PWY-6767</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_FARNESYL__45__PP_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__465_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12270" name="Glycosyl hydrolase, family 88" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_002970) or (Ec-02_002980)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6827</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__13187_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__13122_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__13188_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12322" name="Protein phosphatase methylesterase, eukaryotic" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_001900)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Phosphatase__45__2A__45__leucine__45__methyl__45__ester_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Phosphatase__45__2A__45__leucine_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_METOH_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12383" name="RXN-12383" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: TRIGLSYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_DIACYLGLYCEROL_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Triacylglycerols_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__409_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12398" name="xyloglucan XXLG oligosaccharide &amp;beta;-galactosidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_007000) or (Ec-06_001410)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6807</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__13376_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_D__45__galactopyranose_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__13375_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12399" name="xyloglucan XLXG oligosaccharide &amp;beta;-galactosidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_007000) or (Ec-06_001410)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6807</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__13377_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__13375_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_D__45__galactopyranose_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12400" name="xyloglucan XLLG oligosaccharide &amp;beta;-galactosidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_007000) or (Ec-06_001410)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6807</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__13378_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_D__45__galactopyranose_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_CPD__45__13375_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12440" name="Haem peroxidase, plant/fungal/bacterial" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_000230) or (Ec-02_001210) or (Ec-02_001740)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6960 , PWY-6959 , PWY-6961</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_HYDROGEN__45__PEROXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ASCORBATE_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ASCORBATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__DEHYDRO__45__ASCORBATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12445" name="riboflavin reductase (NADPH)" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_006530)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_RIBOFLAVIN_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH__45__P__45__OR__45__NOP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NAD__45__P__45__OR__45__NOP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__316_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12460" name="L-asparaginyl-tRNAasn hydrolase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_001700) or (Ec-07_007410) or (Ec-07_007430) or (Ec-07_007720)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY490-4</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Charged__45__ASN__45__tRNAs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ASN__45__tRNAs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_ASN_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12473" name="molybdopterin-synthase adenylyltransferase / sulfurtransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-22_001380)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6823</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_L__45__Cysteine__45__Desulfurase__45__persulfide_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Carboxyadenylated__45__MPT__45__synthases_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Donor__45__H2_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Thiocarboxylated__45__MPT__45__synthases_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Acceptor_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Cysteine__45__Desulfurase__45__L__45__cysteine_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12486" name="GDP-L-galactose/GDP-D-glucose phosphorylase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-15_001960)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GDP__45__D__45__GLUCOSE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLC__45__1__45__P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GDP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12490" name="6-phosphogluconate dehydrogenase, C-terminal-like" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_005290) or (Ec-14_006530)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7094</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD0__45__2244_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD0__45__2123_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12502" name="tRNAHis guanylyltransferase Thg1" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_001350)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_p__45__his__45__tRNAS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GTP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_pppGp__45__his__45__tRNAs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12503" name="tRNAHis guanylyltransferase Thg1" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_001350)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_p__45__his__45__tRNAS_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_App__45__his__45__tRNAs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12504" name="tRNAHis guanylyltransferase Thg1" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_001350)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_App__45__his__45__tRNAs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GTP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_pppGp__45__his__45__tRNAs_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12507" name="RXN-12507" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-14_006530)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7654</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD0__45__2171_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__10284_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12508" name="2-(&amp;alpha;-hydroxyethyl)-TPP:[dihydrolipoyllysine-residue acetyltransferase]-lipoyllysine acetyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-18_003420) or (Ec-23_002710)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_2__45__ALPHA__45__HYDROXYETHYL__45__THPP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pyruvate__45__dehydrogenase__45__lipoate_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_THIAMINE__45__PYROPHOSPHATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pyruvate__45__dehydrogenase__45__acetylDHlipoyl_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12518" name="acyl-CoA oxidase, partial" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_004320) or (Ec-22_002920) or (Ec-08_006390)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6837</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_cis__45__5__45__enoyl__45__CoA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_HYDROGEN__45__PEROXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_trans__45__2__45__cis__45__5__45__dienoyl__45__CoA_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12521" name="NAD(P)-binding domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_003950)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6837</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_TETRADEHYDROACYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Trans__45__3__45__enoyl__45__CoAs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12539" name="RXN-12539" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6854</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__479_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__12377_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__7671_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ETHYLENE__45__CMPD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12540" name="Fenton reaction" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: DETOX1-PWY-1 , PWY-6854</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_FE__43__2_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HYDROGEN__45__PEROXIDE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_FE__43__3_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__12377_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OH_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12554" name="chitinase-domain containing protein" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-05_006850)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6855</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CHITIN_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CHITOBIOSE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12561" name="Thiolase, C-terminal" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-24_000870) or (Ec-22_002850)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ACETYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROPIONYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__13534_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12565" name="RXN-12565" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-22_002850) or (Ec-26_003940)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-6863</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ACETYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_BUTYRYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_K__45__HEXANOYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12567" name="ClpP/crotonase-like domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_001380) or (Ec-16_003560) or (Ec-14_006530) or (Ec-16_001250)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6863</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OH__45__HEXANOYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD0__45__2121_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12570" name="6-phosphogluconate dehydrogenase, C-terminal-like" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_005290) or (Ec-14_006530)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6863</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_K__45__HEXANOYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OH__45__HEXANOYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12575" name="all-trans retinyl-ester hydrolase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_004830) or (Ec-16_002070) or (Ec-19_001900) or (Ec-12_006850) or (Ec-25_000250)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6857</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_All__45__trans__45__Retinyl__45__Esters_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__13524_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Long__45__Chain__45__Fatty__45__Acids_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12579" name="triglyceride lipase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-11_004280) or (Ec-24_003610) or (Ec-15_000020) or (Ec-27_003400) or (Ec-23_002290) or (Ec-23_002340) or (Ec-16_003710) or (Ec-15_000230) or (Ec-21_004100) or (Ec-15_000160) or (Ec-15_000190) or (Ec-06_004240) or (Ec-11_001230) or (Ec-02_001660) or (Ec-15_000240) or (Ec-06_003310) or (Ec-23_002330) or (Ec-06_005070) or (Ec-16_000950)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6857</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Dietary__45__retinyl__45__esters_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__13524_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Long__45__Chain__45__Fatty__45__Acids_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12583" name="pyruvate:thiamin diphosphate acetaldehydetransferase (decarboxylating)" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_000530) or (Ec-18_003420) or (Ec-23_002710)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PYRUVATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_THIAMINE__45__PYROPHOSPHATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__ALPHA__45__HYDROXYETHYL__45__THPP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12587" name="Aminotransferase class V domain" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-22_000950) or (Ec-21_003740) or (Ec-21_005640)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Unsulfurated__45__Sulfur__45__Acceptors_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__Cysteine__45__Desulfurase__45__persulfide_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Cysteine__45__Desulfurase__45__L__45__cysteine_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Sulfurated__45__Sulfur__45__Acceptors_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12588" name="Aminotransferase class V domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_003740) or (Ec-22_000950) or (Ec-21_005640)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CYS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Unsulfurated__45__Sulfur__45__Acceptors_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Sulfurated__45__Sulfur__45__Acceptors_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__ALPHA__45__ALANINE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12623" name="N,N&apos;-diacetylchitobiose synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-05_006850)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6902</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Chitodextrins_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CHITOBIOSE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12624" name="chitinase-domain containing protein" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-05_006850)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6902</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Chitodextrins_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__13227_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12625" name="N,N&apos;-diacetylchitobiose &amp;beta;-N-acetylglucosaminidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_001990)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6902</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CHITOBIOSE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_N__45__acetyl__45__D__45__glucosamine_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12647" name="RXN-12647" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_E__45___c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Oxidized__45__Plastocyanins_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Plastocyanin__45__Reduced_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12669" name="acyl-CoA oxidase, partial" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_004320) or (Ec-22_002920) or (Ec-08_006390)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6920</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__196_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD0__45__2108_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HYDROGEN__45__PEROXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12693" name="3-beta-hydroxy-delta5-steroid dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_002740) or (Ec-15_000670) or (Ec-21_001850)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6946</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CHOLESTEROL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__13684_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12705" name="6-phosphogluconate dehydrogenase, C-terminal-like" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_005290) or (Ec-14_006530)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6946 , PWY-6945</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__13694_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__13695_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12720" name="Sulphate adenylyltransferase catalytic domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_000240) or (Ec-02_000870)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6932</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_SELENATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__13713_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12726" name="Tryptophan synthase beta subunit-like PLP-dependent enzyme" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_012080) or (Ec-00_008830) or (Ec-01_011260)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6936</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__678_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACETYLSERINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ACET_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__SELENOCYSTEINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12729" name="Cystathionine beta-lyase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-05_006760) or (Ec-00_002820)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6936</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__13717_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PYRUVATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SELENOHOMOCYSTEINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12730" name="5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-28_003190)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6936</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_SELENOHOMOCYSTEINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__1302_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_SELENOMETHIONINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__1301_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12747" name="5-hydroxy-3-[(3aS,4S,5R,7aS)-7a-methyl-1,5-dioxo-octahydro-1H-inden-4-yl]propanoyl-CoA 5-dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_002740) or (Ec-15_000670) or (Ec-21_001850)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6944</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__13754_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__13755_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12750" name="3-[(3aS,4S,5R,7aS)-5-hydroxy-7a-methyl-1-oxo-octahydro-1H-inden-4-yl]-3-hydroxypropanoate dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_005290) or (Ec-14_006530)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6944</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__13757_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__13758_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12753" name="RXN-12753" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6938</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__653_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12754" name="RXN-12754" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6938</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD0__45__2472_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12789" name="3-beta-hydroxy-delta5-steroid dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_002740) or (Ec-15_000670) or (Ec-21_001850)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6948</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__4143_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__13793_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12861" name="dehydroascorbate hydrolase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6959 , PWY-6961</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__13907_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__334_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12862" name="RXN-12862" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6959 , PWY-6961</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_L__45__DEHYDRO__45__ASCORBATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__13907_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12869" name="RXN-12869" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6960</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_L__45__DEHYDRO__45__ASCORBATE_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_CPD__45__13914_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12870" name="RXN-12870" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6959</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__334_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__13913_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12871" name="RXN-12871" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6959</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__13913_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__13912_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12872" name="RXN-12872" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6960</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__13914_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__13910_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12876" name="RXN-12876" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ASCORBATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Cytochromes__45__C__45__Oxidized_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Cytochromes__45__C__45__Reduced_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__DEHYDRO__45__ASCORBATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12878" name="Aldolase-type TIM barrel" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_004970) or (Ec-00_000720)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLT_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Oxidized__45__ferredoxins_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Reduced__45__ferredoxins_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12959" name="RXN-12959" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: TRIGLSYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CTP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DIACYLGLYCEROL_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__PHOSPHATIDATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__12978" name="long chain acyl-CoA synthetase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_006430) or (Ec-01_001560) or (Ec-03_003710) or (Ec-12_008720)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_5Z8Z11Z14Z17Z__45__EICOSAPENTAENOATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__14018_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__13008" name="NAD(P)-binding domain" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_007100)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_3__45__HYDROXY__45__DOCOSAPENTAENOYL__45__ACP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__OXO__45__EICOSAPENTAENOYL__45__ACP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__1302" name="RXN-1302" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_000120) or (Ec-27_004280)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-481</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_S__45__1__45__PHENYLETHANOL_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PHENYL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__13061" name="Uncharacterised domain, di-copper centre" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_003140) or (Ec-12_008160)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5399</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__DIHYDROXY__45__PHENYLALANINE_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_DOPAQUINONE_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__13064" name="Aromatic-ring hydroxylase-like" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_003280) or (Ec-00_001320) or (Ec-01_010880)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6992</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Red__45__NADPH__45__Hemoprotein__45__Reductases_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__9446_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_D__45__mannopyranose_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Ox__45__NADPH__45__Hemoprotein__45__Reductases_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__13112" name="RXN-13112" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-25_001550)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ACYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLYCEROL__45__3P_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__Acyl__45__sn__45__glycerol__45__3__45__phosphates_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__13158" name="3-isopropylmalate dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_002120)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_2__45__D__45__THREO__45__HYDROXY__45__3__45__CARBOXY__45__ISOCAPROATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2K__45__4CH3__45__PENTANOATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__13162" name="Isopentenyl-diphosphate delta-isomerase type 1 fused to squalene synthase; probably two separate ORFs" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-11_001030)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5670</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_FARNESYL__45__PP_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_NADH__45__P__45__OR__45__NOP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_SQUALENE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_NAD__45__P__45__OR__45__NOP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__13163" name="Aconitase/3-isopropylmalate dehydratase, swivel" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_000170)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_2__45__D__45__THREO__45__HYDROXY__45__3__45__CARBOXY__45__ISOCAPROATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_3__45__CARBOXY__45__3__45__HYDROXY__45__ISOCAPROATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__13202" name="carbamoyl-phosphate synthase (glutamine-hydrolyzing)" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_006110)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-4984</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_HCO3_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBAMOYL__45__P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__1321" name="Lipoxygenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-20_003630) or (Ec-03_000010) or (Ec-20_003620) or (Ec-03_000020)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5410 , PWY-735</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_LINOLENIC_ACID_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__725_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__13290" name="15-tetracosenoate&amp;mdash;CoA ligase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_006430) or (Ec-12_008720) or (Ec-01_001560) or (Ec-03_003710)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__14268_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__14269_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__13295" name="RXN-13295" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
            <p>SUBSYSTEM: PWY-7036</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__9965_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MALONYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__10283_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__13299" name="RXN-13299" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
            <p>SUBSYSTEM: PWY-7036</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__10283_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__14276_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__13303" name="RXN-13303" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
            <p>SUBSYSTEM: PWY-7036</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__14276_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__14281_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__13307" name="RXN-13307" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
            <p>SUBSYSTEM: PWY-7036</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__14281_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__10279_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__13322" name="3-ketoacyl-CoA synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-28_003080)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6433</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_MALONYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OLEOYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__14300_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__13323" name="Phytoene synthase; chloroplast precursor" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-04_002810)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD0__45__1028_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__12321_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__13334" name="phosphatidylinositol phospholipase C" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_005750)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__1108_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DIACYLGLYCEROL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_INOSITOL__45__1__45__4__45__BISPHOSPHATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__13398" name="chlorophyllide a oxygenase [overall]" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_002880) or (Ec-11_003750) or (Ec-03_003240) or (Ec-14_003590) or (Ec-06_002840) or (Ec-06_002860) or (Ec-28_000110)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_CHLOROPHYLLIDE__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="3" constant="false"/>
          <speciesReference species="M_CPD__45__7014_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__13403" name="Tetrapyrrole methylase, subdomain 2" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_004170)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_UROPORPHYRINOGEN__45__III_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_S__45__ADENOSYLMETHIONINE_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DIHYDROSIROHYDROCHLORIN_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADENOSYL__45__HOMO__45__CYS_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__13406" name="RXN-13406" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_S__45__ADENOSYLMETHIONINE_c" stoichiometry="3" constant="false"/>
          <speciesReference species="M_GLY_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="3" constant="false"/>
          <speciesReference species="M_ADENOSYL__45__HOMO__45__CYS_c" stoichiometry="3" constant="false"/>
          <speciesReference species="M_BETAINE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__13414" name="Deoxyhypusine synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_002000)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5905</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_SPERMIDINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__14378_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__13415" name="Deoxyhypusine synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_002000)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5905</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Deoxyhypusine__45__Synthase__45__Lysine_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__14378_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_N__45__4__45__aminobutylidene__45__enzyme__45__lysine_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__313_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__13416" name="Deoxyhypusine synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_002000)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5905</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_N__45__4__45__aminobutylidene__45__enzyme__45__lysine_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_EIF5A__45__LYSINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Deoxyhypusine__45__Synthase__45__Lysine_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_N__45__4__45__aminobutylidene__45__eIF5A__45__lysine_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__13417" name="Deoxyhypusine synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_002000)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5905</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_N__45__4__45__aminobutylidene__45__eIF5A__45__lysine_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__9973_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__13426" name="&amp;alpha;-linolenoyl-CoA &amp;Delta;6-desaturase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-24_002300)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7049</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_LINOLENOYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FERROCYTOCHROME__45__B5_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_FERRICYTOCHROME__45__B5_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_CPD__45__14392_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__13431" name="RXN-13431" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
            <p>SUBSYSTEM: PWY-7050</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_MALONYL__45__COA_c" stoichiometry="9" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="13" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="21" constant="false"/>
          <speciesReference species="M_ACETYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADP_c" stoichiometry="13" constant="false"/>
          <speciesReference species="M_5Z8Z11Z14Z17Z__45__EICOSAPENTAENOATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="9" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="8" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="10" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__13435" name="RXN-13435" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__14407_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__8120_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__13442" name="RXN-13442" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7727 , PWY-7606 , PWY-7053</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_MALONYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__14018_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__14423_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__13443" name="RXN-13443" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7727 , PWY-7606 , PWY-7053</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__14423_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH__45__P__45__OR__45__NOP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NAD__45__P__45__OR__45__NOP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__14424_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__13444" name="RXN-13444" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7727 , PWY-7606 , PWY-7053</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__14424_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__14425_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__13445" name="RXN-13445" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7727 , PWY-7053 , PWY-7606</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__14425_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Donor__45__H2_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Acceptor_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__14426_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__13482" name="Aspartate/ornithine carbamoyltransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-00_004630)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CARBAMOYL__45__P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__ORNITHINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__CITRULLINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__13519" name="vectoral H+ export" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="4" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_e" stoichiometry="4" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__13600" name="Beta-glucosidase, family GH1" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-20_004800) or (Ec-07_005240) or (Ec-07_001850) or (Ec-26_002410) or (Ec-04_002190)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7089</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__1103_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Glucopyranose_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_4__45__HYDROXYBENZALDEHYDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HCN_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__13602" name="linustatin &amp;beta;-diglucosidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-20_004800) or (Ec-07_005240) or (Ec-07_001850) or (Ec-26_002410) or (Ec-04_002190)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7091</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__14594_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Glucopyranose_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_LINAMARIN_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__13603" name="neolinustatin &amp;beta;-diglucosidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-20_004800) or (Ec-07_005240) or (Ec-07_001850) or (Ec-26_002410) or (Ec-04_002190)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7092</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__14596_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Glucopyranose_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__10277_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__13614" name="long chain acyl-coA synthetase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_003710) or (Ec-12_008720) or (Ec-01_001560) or (Ec-02_006430)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7094</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__3617_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__10267_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__13616" name="enoyl-Coenzyme A hydratase/3-hydroxyacyl Coenzyme A dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_001380) or (Ec-16_003560) or (Ec-14_006530) or (Ec-16_001250)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7094</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_T2__45__DECENOYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD0__45__2244_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__13617" name="RXN-13617" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_003940)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-7094</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD0__45__2123_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__196_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACETYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__13673" name="Thioredoxin-like fold" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-13_002360) or (Ec-06_008030) or (Ec-13_000340) or (Ec-11_002590) or (Ec-13_002370) or (Ec-06_002520) or (Ec-00_008870) or (Ec-09_003670) or (Ec-18_001510) or (Ec-27_000400) or (Ec-24_001030) or (Ec-27_000390) or (Ec-00_008370) or (Ec-00_008380) or (Ec-20_001950) or (Ec-00_008360) or (Ec-00_000320) or (Ec-00_008890)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7112</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__10806_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLUTATHIONE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__14704_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__13677" name="Peptidase M1, alanyl aminopeptidase, C-terminal" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-09_003180)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7112</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__14705_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__14706_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLY_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__13682" name="3-oxo-5-alpha-steroid 4-dehydrogenase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_006180)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_3__45__Oxo__45__5__45__Alpha__45__Steroids_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Acceptor_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Donor__45__H2_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__Oxo__45__Delta__45__4__45__Steroids_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__13697" name="Aspartate Aminotransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_007480) or (Ec-03_003270) or (Ec-23_003500)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7115 , PWY-7117</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_L__45__ASPARTATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_OXALACETIC_ACID_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLT_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__13698" name="Glutamate:glyoxylate aminotransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_011040)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7115 , PWY-7117</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__ALPHA__45__ALANINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_GLT_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PYRUVATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__13707" name="24,25-dihydrolanosterol 14-demethylase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_006240)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__8606_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="3" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="3" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_FORMATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="3" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="4" constant="false"/>
          <speciesReference species="M_CPD__45__8609_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__13709" name="4-methylsterol monooxygenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_FERROCYTOCHROME__45__B5_c" stoichiometry="6" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="3" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="5" constant="false"/>
          <speciesReference species="M_4__45__METHYL__45__824__45__CHOLESTADIENOL_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_FERRICYTOCHROME__45__B5_c" stoichiometry="6" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="4" constant="false"/>
          <speciesReference species="M_CPD__45__4702_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__13722" name="Homoaconitate hydratase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-13_001950)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_HOMO__45__CIT_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_HOMO__45__I__45__CIT_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__13724" name="RXN-13724" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-11_001030)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-6105</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__465_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SQUALENE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__13729" name="Pyridoxal-dependent decarboxylase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_002920)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7119</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PHTYOSPHINGOSINE__45__1__45__P_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PHOSPHORYL__45__ETHANOLAMINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__14766_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__13733" name="Ceramidase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_006010)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7119</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD3DJ__45__82_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Carboxylates_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__13612_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__13805" name="Glycerol-3-phosphate O-acyltransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_003960)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__14772_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLYCEROL__45__3P_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__14828_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__1381" name="Glycerol-3-phosphate O-acyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_003960)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5667 , TRIGLSYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GLYCEROL__45__3P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Long__45__Chain__45__Acyl__45__CoAs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ACYL__45__SN__45__GLYCEROL__45__3P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__13883" name="Fatty acid hydroxylase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_003780)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7154</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_FERROCYTOCHROME__45__B5_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_CPD__45__14893_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_FERRICYTOCHROME__45__B5_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_CPD__45__14894_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__13892" name="Fatty acid hydroxylase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_003780)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7155</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_CPD__45__14901_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FERROCYTOCHROME__45__B5_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_CPD__45__14900_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FERRICYTOCHROME__45__B5_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__13908" name="4-alpha-hydroxytetrahydrobiopterin dehydratase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_001420)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7158</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__14931_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_10__45__FORMYL__45__DIHYDROFOLATE__45__GLU__45__N_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__13926" name="3-beta hydroxysteroid dehydrogenase/isomerase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_001850)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD__45__P__45__OR__45__NOP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3beta__45__hydroxy__45__4alpha__45__carboxy__45__sterols_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_3__45__Oxosteroids_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH__45__P__45__OR__45__NOP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__13961" name="Cytochrome P450" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_006240)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_14__45__alpha__45__methylsteroids_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="3" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="3" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_FORMATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="3" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="4" constant="false"/>
          <speciesReference species="M_Delta__45__14__45__steroids_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__13990" name="L-4-hydroxy-2-oxoglutarate aldolase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_004070)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__15016_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_GLYOX_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PYRUVATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14003" name="RXN-14003" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_003360)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_IDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_IMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14014" name="dihydrodipicolinate reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-15_000750)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-2942 , PWY-5097 , PWY-2941 , DAPLYSINESYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__14443_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_DELTA1__45__PIPERIDEINE__45__2__45__6__45__DICARBOXYLATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14024" name="Apyrase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_001970)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Nucleoside__45__Triphosphates_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pi_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_Nucleoside__45__Monophosphates_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14025" name="5&apos;-nucleotidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-05_000950) or (Ec-12_005060) or (Ec-15_000820)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7185</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_UMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_URIDINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14026" name="5&apos;-nucleotidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-05_000950) or (Ec-12_005060) or (Ec-15_000820)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7185</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CMP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CYTIDINE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__1404" name="RXN-1404" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_000350) or (Ec-01_002370)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-5026 , PWY-581 , PWYQT-4476</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_INDOLEYL__45__CPD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_INDOLE_ACETATE_AUXIN_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14047" name="Aconitate hydratase," reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_000170) or (Ec-16_001000)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CIT_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_THREO__45__DS__45__ISO__45__CITRATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14048" name="Pyridoxal phosphate-dependent transferase, major region, subdomain 1" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_003100)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: HOMOCYSDEGR-PWY , PWY-801</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_L__45__CYSTATHIONINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CYS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__15056_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14049" name="Pyridoxal phosphate-dependent transferase, major region, subdomain 1" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_003100)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_HOMO__45__SER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__15056_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14056" name="RXN-14056" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__12177_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CH3__45__MALONATE__45__S__45__ALD_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14073" name="glycerophosphodiester phosphodiesterase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-23_002720) or (Ec-23_002410)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLYCEROPHOSPHOGLYCEROL_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLYCEROL__45__3P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLYCEROL_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14107" name="menaquinol-cytochrome c reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_002540) or (Ec-18_002810) or (Ec-25_001440) or (Ec-21_004500) or (Ec-08_003040)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Cytochromes__45__C__45__Oxidized_e" stoichiometry="2" constant="false"/>
          <speciesReference species="M_Menaquinols_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Cytochromes__45__C__45__Reduced_e" stoichiometry="2" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_Menaquinones_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14116" name="RXN-14116" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PROUT-PWY , ARGASEDEG-PWY , PWY-6853</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_L__45__GLUTAMATE_GAMMA__45__SEMIALDEHYDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLT_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14117" name="Pyruvate kinase, alpha/beta" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_004170) or (Ec-06_006860) or (Ec-12_000950)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GTP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PYRUVATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PHOSPHO__45__ENOL__45__PYRUVATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14120" name="nucleoside diphosphate kinase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-04_001140) or (Ec-11_004330) or (Ec-22_003280) or (Ec-07_000140) or (Ec-26_003930) or (Ec-03_001380) or (Ec-11_005170)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_IDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ITP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14125" name="RXN-14125" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-13_002160)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_4__45__PHOSPHONOOXY__45__THREONINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD0__45__2189_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14136" name="glycerophosphodiester phosphodiesterase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-23_002720) or (Ec-23_002410)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD0__45__2030_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLYCEROL__45__3P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14139" name="RXN-14139" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-13_002810)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_UTP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_UMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14140" name="RXN-14140" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-13_002810)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GTP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_GMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14146" name="RXN-14146" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-11_002460)</p>
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__15125_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_SUCC__45__S__45__ALD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PYRUVATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14160" name="glycerophosphorylethanolamine phosphodiesterase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-23_002720) or (Ec-23_002410)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7409</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__1__45__GLYCEROPHOSPHORYLETHANOL__45__AMINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_GLYCEROL__45__3P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ETHANOL__45__AMINE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14177" name="RXN-14177" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_002620) or (Ec-16_000550) or (Ec-17_000350) or (Ec-27_000650) or (Ec-09_002660) or (Ec-27_005280) or (Ec-08_006620)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_S__45__ADENOSYLMETHIONINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__15152_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__15153_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADENOSYL__45__HOMO__45__CYS_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14179" name="Beta-glucosidase, family GH3" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-20_004800) or (Ec-07_005240) or (Ec-07_001850) or (Ec-26_002410) or (Ec-04_002190)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SCOPOLIN_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_SCOPOLETIN_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Glucopyranose_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14187" name="Apyrase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_001970)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7210</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_DCDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_DCMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14189" name="Catalase-peroxidase haem" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-00_008210) or (Ec-07_004600) or (Ec-02_000470) or (Ec-05_003380) or (Ec-00_010030) or (Ec-11_003410) or (Ec-07_001420) or (Ec-00_008240) or (Ec-00_008230)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_HYDROGEN__45__PEROXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_METOH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_FORMALDEHYDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14192" name="Pyruvate kinase, barrel" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_004170) or (Ec-06_006860) or (Ec-12_000950)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PYRUVATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PHOSPHO__45__ENOL__45__PYRUVATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14195" name="Apyrase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_001970)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_DATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_DAMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14196" name="carbamoyl-phosphate synthase (glutamine-hydrolyzing)" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_006110)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7693</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CARBAMATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBAMOYL__45__P_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14198" name="Apyrase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_001970)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_DCTP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_DCMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14199" name="Apyrase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_001970)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_DUTP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_DUMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14200" name="Apyrase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_001970)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_TTP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_TMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14201" name="Apyrase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_001970)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_GTP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_GMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14205" name="Apyrase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_001970)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD0__45__1905_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__12365_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14207" name="Pyruvate kinase, alpha/beta" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_004170) or (Ec-06_006860) or (Ec-12_000950)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_DGTP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PYRUVATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_DGDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PHOSPHO__45__ENOL__45__PYRUVATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14208" name="Apyrase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_001970)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_DGTP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_DGMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14209" name="RXN-14209" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-11_002450)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_4__45__AMINO__45__BUTYRALDEHYDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_4__45__AMINO__45__BUTYRATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14213" name="Apyrase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_001970)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_TDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_TMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14214" name="Apyrase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_001970)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_DATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14215" name="Apyrase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_001970)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DADP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DAMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14216" name="Apyrase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_001970)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_DCTP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DCDP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14217" name="Apyrase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_001970)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_DGTP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DGDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14218" name="Apyrase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_001970)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DGDP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DGMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14219" name="Apyrase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_001970)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_DUTP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_DUDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14220" name="Apyrase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_001970)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DUDP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DUMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14223" name="ribokinase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-07_005840) or (Ec-01_005220)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_2__45__DEOXYRIBOSE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DEOXY__45__RIBOSE__45__5P_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14224" name="RXN-14224" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-11_002450)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__15163_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__661_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14225" name="RXN-14225" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-11_002450)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_D__45__GLUCURONOLACTONE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_D__45__GLUCARATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="3" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14227" name="5&apos;-nucleotidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-05_000950) or (Ec-12_005060) or (Ec-15_000820)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NICOTINATE_NUCLEOTIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__8259_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14228" name="nucleoside diphosphate kinase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-04_001140) or (Ec-11_004330) or (Ec-22_003280) or (Ec-07_000140) or (Ec-26_003930) or (Ec-03_001380) or (Ec-11_005170)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD0__45__2231_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DITP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14240" name="baicalein peroxidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_001880) or (Ec-05_002520) or (Ec-24_002370) or (Ec-14_006530) or (Ec-02_003170) or (Ec-11_003410) or (Ec-11_001530) or (Ec-08_006020) or (Ec-28_003740) or (Ec-26_000310) or (Ec-19_000230) or (Ec-02_000470) or (Ec-20_002770) or (Ec-02_001210) or (Ec-06_003550) or (Ec-00_008210) or (Ec-04_004690) or (Ec-00_008220) or (Ec-14_002880) or (Ec-02_001740) or (Ec-17_002430) or (Ec-19_001450) or (Ec-00_008250) or (Ec-16_000240) or (Ec-24_002030) or (Ec-05_003380) or (Ec-00_010030) or (Ec-17_002450) or (Ec-00_008240) or (Ec-27_004950)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7214</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_HYDROGEN__45__PEROXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__12724_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_CPD__45__15172_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14264" name="isovaleryl-CoA dehydrogenase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-08_006390) or (Ec-03_003490) or (Ec-14_006780)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ISOVALERYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FAD_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_FADH2_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__METHYL__45__CROTONYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14266" name="3-hydroxyisovaleryl-CoA hydratase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_001250) or (Ec-16_003560) or (Ec-06_001380) or (Ec-14_006530)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_3__45__HYDROXY__45__ISOVALERYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__1083_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14268" name="lauroyl-CoA acetyl-CoA acyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_003940)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-7654</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__10284_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_LAUROYLCOA__45__CPD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACETYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14270" name="5-amino-4-imidazolecarboxamide phosphoribosyltransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-28_000520)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AICAR_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__3762_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PRPP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14271" name="(S)-3-hydroxypalmitoyl-CoA oxidoreductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-14_006530)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7654 , PWY-7656</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD0__45__2232_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__OXOPALMITOYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14272" name="(E)-hexadec-2-enoyl-CoA hydratase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_001250) or (Ec-16_003560) or (Ec-06_001380) or (Ec-14_006530)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7654 , PWY-7656</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD0__45__2117_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD0__45__2232_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14273" name="trans-tetradec-2-enoyl-CoA hydratase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_001250) or (Ec-16_003560) or (Ec-06_001380) or (Ec-14_006530)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7654</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__15568_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD0__45__2171_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14274" name="decanoyl-CoA C-acyltransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_003940)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ACETYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__10267_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD0__45__2105_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14277" name="hexanoyl-CoA C-acyltransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_003940)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_HEXANOYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACETYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD0__45__2106_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14280" name="perillyl aldehyde dehydrogenase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-11_002450)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__1084_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__12443_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14281" name="Glucosidase 2 subunit beta" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-23_001860) or (Ec-01_006760)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_MALTOPENTAOSE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Glucopyranose_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MALTOTETRAOSE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14282" name="Glucosidase 2 subunit beta" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-23_001860) or (Ec-01_006760)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_MALTOHEXAOSE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_MALTOPENTAOSE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Glucopyranose_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14283" name="Glucosidase 2 subunit beta" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-23_001860) or (Ec-01_006760)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD0__45__1133_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Glucopyranose_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MALTOHEXAOSE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14290" name="RXN-14290" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__12377_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_DATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__13851_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14325" name="CTP synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-20_000910) or (Ec-00_000570)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_UTP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CTP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14326" name="Diphthine synthase, putative" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_006260)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6482</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_S__45__ADENOSYLMETHIONINE_c" stoichiometry="3" constant="false"/>
          <speciesReference species="M_2__45__3__45__CARBOXY__45__3__45__AMINOPROPYL__45__L__45__HISTIDINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_DIPHTINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADENOSYL__45__HOMO__45__CYS_c" stoichiometry="3" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="3" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14381" name="RXN-14381" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7250</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_D__45__form__45__FeS__45__Cluster__45__Scaffold__45__Proteins_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Persulfurated__45__L__45__cysteine__45__desulfurases_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_S__45__CD__45__Apo__45__SP__45__Complex_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14382" name="Aminotransferase class V domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_003740) or (Ec-22_000950) or (Ec-21_005640)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6892</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Sulfur__45__Carrier__45__Proteins__45__ThiI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__Cysteine__45__Desulfurase__45__persulfide_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Cysteine__45__Desulfurase__45__L__45__cysteine_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Sulfurylated__45__ThiI_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14384" name="Aminotransferase class V domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-22_000950) or (Ec-21_003740) or (Ec-21_005640)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7250</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_S__45__CD__45__Apo__45__SP__45__Complex_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CD__45__S__45__SP__45__Complex_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14385" name="Aminotransferase class V domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_003740) or (Ec-22_000950) or (Ec-21_005640)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7250</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CD__45__S__45__SP__45__Complex_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CYS_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_L__45__ALPHA__45__ALANINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_S__45__CD__45__S__45__SP__45__Complex_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14386" name="Aminotransferase class V domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_003740) or (Ec-22_000950) or (Ec-21_005640)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7250</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_S__45__CD__45__S__45__SP__45__Complex_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CD__45__2S__45__SP__45__Complex_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14387" name="Frataxin/CyaY" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_001380) or (Ec-18_000430)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7250</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_FE__43__3_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_CD__45__2S__45__SP__45__Complex_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CD__45__SP__45__2Fe2S__45__Complex_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14388" name="RXN-14388" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7250</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_FeS__45__Cluster__45__Co__45__Chaperones_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CD__45__SP__45__2Fe2S__45__Complex_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_L__45__Cysteine__45__Desulfurases_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Co__45__chaperone__45__SP__45__2Fe2S__45__Complex_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14389" name="RXN-14389" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7250</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Co__45__chaperone__45__SP__45__2Fe2S__45__Complex_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FeS__45__Cluster__45__Chaperones__45__ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Chap__45__ATP__45__Co__45__chaperone__45__SP__45__2Fe2S__45__Complex_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14390" name="RXN-14390" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7250</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Apo__45__FeS__45__cluster__45__proteins_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Chap__45__ATP__45__Co__45__chaperone__45__SP__45__2Fe2S__45__Complex_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_2Fe__45__2S__45__proteins_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FeS__45__Cluster__45__Co__45__Chaperones_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Chap__45__ADP__45__apo__45__SP__45__Complex_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14391" name="RXN-14391" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7250</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Chap__45__ADP__45__apo__45__SP__45__Complex_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_D__45__form__45__FeS__45__Cluster__45__Scaffold__45__Proteins_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FeS__45__Cluster__45__Chaperones__45__ATP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14396" name="RXN-14396" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_HYDROXYMETHYLBILANE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__11444_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14409" name="RXN-14409" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__15590_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_D__45__galactopyranose_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14451" name="RXN-14451" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_E__45___c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_CPD__45__9612_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__15301_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14476" name="RXN-14476" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD__45__P__45__OR__45__NOP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__659_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADH__45__P__45__OR__45__NOP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_TYR_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14480" name="tRNA-i(6)A37 thiotransferase enzyme MiaB" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_004930)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_S__45__ADENOSYLMETHIONINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Donor__45__H2_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_6__45__Dimethylallyladenosine37__45__tRNAs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Sulfurated__45__Sulfur__45__Acceptors_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Acceptor_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CH33ADO_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MET_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Unsulfurated__45__Sulfur__45__Acceptors_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__15360_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14481" name="tRNA-i(6)A37 thiotransferase enzyme MiaB" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_004930)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_S__45__ADENOSYLMETHIONINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__15360_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADENOSYL__45__HOMO__45__CYS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__11592_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14500" name="RXN-14500" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-3861</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__15373_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_D__45__mannopyranose_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14501" name="RXN-14501" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__15373_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__12601_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14515" name="RXN-14515" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-4101 , PWY-6531</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__15382_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_BETA__45__D__45__FRUCTOSE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14549" name="25S rRNA (adenine(2142)-N(1))-methyltransferase, Bmt2" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_001780)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_S__45__ADENOSYLMETHIONINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_25S__45__rRNA__45__adenine__45__2142_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_25S__45__rRNA__45__N1__45__methyladenine__45__2142_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADENOSYL__45__HOMO__45__CYS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14569" name="RXN-14569" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY0-1587</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HCO3_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_THR_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__15435_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14570" name="Kae1/YgjD family" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-20_001490)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY0-1587</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_tRNA__45__adenine__45__37_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__15435_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_N6__45__L__45__threonylcarbamoyladenine37__45__tRNAs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14576" name="Acyl-CoA oxidase/dehydrogenase, central domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_004320) or (Ec-22_002920) or (Ec-08_006390)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7291</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__15436_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_HYDROGEN__45__PEROXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD0__45__1162_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14642" name="RXN-14642" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
            <p>SUBSYSTEM: PWY-7294 , PWY-7295</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Acceptor_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLYCOLALDEHYDE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLYCOLLATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Donor__45__H2_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14693" name="RXN-14693" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7247 , PWY3DJ-35471 , PWY-5525</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_D__45__Glucopyranuronate_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__15530_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14715" name="2-trans,4-trans-tetradecadienoyl-CoA reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_003950)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7307</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__15566_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__15567_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14727" name="Amidase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_009020) or (Ec-02_005910)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROPIONAMIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROPIONATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14728" name="Amidase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_009020) or (Ec-02_005910)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ACETAMIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ACET_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14771" name="acyl-CoA oxidase, partial" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_004320) or (Ec-22_002920) or (Ec-08_006390)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7337</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__15637_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__15666_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HYDROGEN__45__PEROXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14775" name="acyl-CoA oxidase, partial" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_004320) or (Ec-22_002920) or (Ec-08_006390)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7337</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__15668_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_HYDROGEN__45__PEROXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__15654_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14776" name="NAD(P)-binding domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_003950)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7337</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__15654_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__15655_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14785" name="acyl-CoA oxidase, partial" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_004320) or (Ec-22_002920) or (Ec-08_006390)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7338</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__15651_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_HYDROGEN__45__PEROXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__15675_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14789" name="Acyl-CoA oxidase/dehydrogenase, central domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_004320) or (Ec-22_002920) or (Ec-08_006390)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7338</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__15677_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_HYDROGEN__45__PEROXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__15661_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14790" name="NAD(P)-binding domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_003950)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7338</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__15661_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__15655_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14796" name="acyl-CoA oxidase, partial" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_004320) or (Ec-22_002920) or (Ec-08_006390)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7340</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__15684_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_HYDROGEN__45__PEROXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__15685_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14811" name="RXN-14811" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__15616_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__9569_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14812" name="RXN-14812" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__15709_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_FRUCTOSE__45__6P_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14813" name="RXN-14813" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__15619_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_L__45__Fucopyranoses_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14882" name="RXN-14882" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__15818_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_D__45__Ribofuranose_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14883" name="RXN-14883" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__15818_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_D__45__Ribopyranose_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14897" name="Pectin lyase fold" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_001490) or (Ec-08_000860) or (Ec-08_000930) or (Ec-25_001080) or (Ec-21_003140) or (Ec-13_002640) or (Ec-20_003120) or (Ec-21_001360) or (Ec-08_000940) or (Ec-20_003100) or (Ec-09_004260) or (Ec-13_002310) or (Ec-02_001170) or (Ec-14_000350) or (Ec-00_010800) or (Ec-14_004740) or (Ec-12_000410) or (Ec-14_000190) or (Ec-00_011490) or (Ec-02_001160) or (Ec-13_002330) or (Ec-00_009490) or (Ec-13_002650) or (Ec-18_004360) or (Ec-09_004230) or (Ec-08_000920) or (Ec-04_001770) or (Ec-00_006370) or (Ec-23_004040)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7243</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Pectin_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__11241_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14903" name="proline dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-18_001350)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PROUT-PWY , PWY-5737 , PWY-6922 , CITRULBIO-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ETR__45__Quinones_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PRO_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ETR__45__Quinols_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__DELTA1__45__PYRROLINE_5__45__CARBOXYLATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14904" name="RXN-14904" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: RIBOKIN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__10330_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD0__45__1108_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14906" name="protein serine/threonine/tyrosine kinase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-07_001020)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Proteins__45__L__45__Threonines_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Protein__45__Phosphothreonines_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14971" name="Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-05_003640) or (Ec-27_006560) or (Ec-07_002870) or (Ec-11_000360) or (Ec-07_007310) or (Ec-21_003470)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7254 , P105-PWY , PWY-6969</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_SUC_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ETR__45__Quinones_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_FUM_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ETR__45__Quinols_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14972" name="RXN-14972" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7388</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADPH_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_MALONYL__45__ACP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__oxo__45__hexanoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="3" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__Oxo__45__octanoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14973" name="RXN-14973" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7388</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADPH_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_3__45__Oxo__45__octanoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADP_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_Octanoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14986" name="3-isopropylmalate dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_002120)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7396</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__1130_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__3618_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__14997" name="RXN-14997" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__15318_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__15895_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15005" name="Aspartate/glutamate/uridylate kinase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-24_000610)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7400</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_LysW__45__L__45__glutamate_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_LysW__45__L__45__glutamate__45__5__45__phosphate_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15006" name="N-acetyl-gamma-glutamyl-phosphate reductase, C-terminal part" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_003520)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7400</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_LysW__45__L__45__glutamate__45__5__45__phosphate_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_LysW__45__L__45__glutamate__45__5__45__semialdehyde_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15007" name="Aminotransferase class-III" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-14_006580)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7400</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_LysW__45__L__45__ornithine_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_GLT_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_LysW__45__L__45__glutamate__45__5__45__semialdehyde_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__1501_METACYC18__46__5" name="RXN-1501_METACYC18.5" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_005150) or (Ec-04_004650)</p>
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PHOSPHATIDYLCHOLINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_LINOLENIC_ACID_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__Lysophosphatidylcholines_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15035" name="Acyl transferase/acyl hydrolase/lysophospholipase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_006930) or (Ec-26_002630) or (Ec-23_002490) or (Ec-24_003890) or (Ec-27_004350) or (Ec-04_000440)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7409</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__8355_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OLEATE__45__CPD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__1__45__GLYCEROPHOSPHORYLETHANOL__45__AMINE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15036" name="Lyso-phosphatidylcholine acyltransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_002160)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7409</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__8355_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OLEOYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__8291_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15041" name="D-aminoacyl-tRNA deacylase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_002710)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_D__45__aminoacyl__45__tRNAs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_tRNAs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_D__45__Amino__45__Acids_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15043" name="1-acyl-sn-glycerol-3-phosphate acyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_003240) or (Ec-12_004670) or (Ec-02_006160) or (Ec-26_001280)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7417 , PWY-7411</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_L__45__1__45__LYSOPHOSPHATIDATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OLEOYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__8268_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15044" name="RXN-15044" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7411</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OLEOYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DIHYDROXY__45__ACETONE__45__PHOSPHATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__15924_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15045" name="Glycerol-3-phosphate O-acyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_003960)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7411</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GLYCEROL__45__3P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OLEOYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__1__45__LYSOPHOSPHATIDATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15046" name="RXN-15046" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7411</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__15924_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__1__45__LYSOPHOSPHATIDATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15065" name="phospholipase A2" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_005150) or (Ec-04_004650)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7416</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_1__45__2__45__DIPALMITOYLPHOSPHATIDYLCHOLINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PALMITATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__8343_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15066" name="Lyso-phosphatidylcholine acyltransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_002160)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7416</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PALMITYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__8343_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_1__45__2__45__DIPALMITOYLPHOSPHATIDYLCHOLINE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15067" name="phospholipase A2" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-04_004650) or (Ec-21_005150)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7409</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__8291_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__8355_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OLEATE__45__CPD_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15068" name="phospholipase A2" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-04_004650) or (Ec-21_005150)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7417</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__8268_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_L__45__1__45__LYSOPHOSPHATIDATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OLEATE__45__CPD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15115" name="Glyceraldehyde/Erythrose phosphate dehydrogenase family" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_003750) or (Ec-19_001850)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLYCERALD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_GLYCERATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15117" name="RXN-15117" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-09_003380) or (Ec-11_005220) or (Ec-03_005030) or (Ec-06_009840) or (Ec-28_002440) or (Ec-17_001510) or (Ec-10_004300) or (Ec-04_002960) or (Ec-03_004420) or (Ec-17_003500) or (Ec-22_000030) or (Ec-18_002280) or (Ec-00_005450)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__12575_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__168_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_diacyl__45__3__45__O__45__glucl__45__1__45__6__45__gluc__45__sn__45__glycerol_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_UDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15121" name="RXN-15121" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5437 , PWY-5826 , HOMOCYSDEGR-PWY , ILEUSYN-PWY , PWY-701</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__15056_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__16013_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15122" name="Tryptophan synthase beta subunit-like PLP-dependent enzyme" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_001910) or (Ec-06_007490)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5437 , ILEUSYN-PWY , PWY-5826</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_THR_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__15056_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15123" name="RXN-15123" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5437 , PWY-5826 , HOMOCYSDEGR-PWY , ILEUSYN-PWY , PWY-701</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__16013_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_2__45__OXOBUTANOATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15124" name="RXN-15124" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: TRYPDEG-PWY , PWY-3661 , LCYSDEG-PWY , SERDEG-PWY , PWY0-1535 , PWY-5497</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_2__45__AMINOACRYLATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__16015_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15127" name="RXN-15127" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: TRYPDEG-PWY , PWY-3661 , LCYSDEG-PWY , SERDEG-PWY , PWY0-1535 , PWY-5497</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__16015_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PYRUVATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15128" name="Pyridoxal phosphate-dependent transferase, major region, subdomain 1" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_003100)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CYSTINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_THIOCYSTEINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__AMINOACRYLATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15129" name="Pyridoxal phosphate-dependent transferase, major region, subdomain 1" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_003100)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: LCYSDEG-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CYS_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_HS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__AMINOACRYLATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15130" name="Pyridoxal phosphate-dependent transferase, major region, subdomain 1" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_003100)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_L__45__CYSTATHIONINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CYS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__OXOBUTANOATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15131" name="Cys/Met metabolism, pyridoxal phosphate-dependent enzyme" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-05_006760) or (Ec-00_002820)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-702 , PWY-801 , HOMOSER-METSYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_L__45__CYSTATHIONINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__AMINOACRYLATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HOMO__45__CYS_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15137" name="Cys/Met metabolism, pyridoxal phosphate-dependent enzyme" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-05_006760) or (Ec-00_002820)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__13717_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SELENOHOMOCYSTEINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__AMINOACRYLATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15139" name="RXN-15139" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__12377_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_ADENINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD0__45__2461_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15149" name="Tryptophan synthase beta subunit-like PLP-dependent enzyme" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-20_002800)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__68_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__15056_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15200" name="phenylpyruvate aminotransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
            <p>SUBSYSTEM: PWY-7432</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_TYR_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PHENYL__45__PYRUVATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_P__45__HYDROXY__45__PHENYLPYRUVATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PHE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15268" name="Alpha-(1,3)-fucosyltransferase, family GT10" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_005030)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GUANOSINE_DIPHOSPHATE_FUCOSE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_BETA__45__D__45__GALACTOSYL__45__ETCETERA__45__GLUCOSAMINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__16475_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GDP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15271" name="RXN-15271" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7434</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_B__45__Gal__45__14__45__NacGlc__45__R_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CMP__45__N__45__ACETYL__45__NEURAMINATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__16483_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15276" name="RXN-15276" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7434</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_N__45__ACETYL__45__BETA__45__D__45__GLUCOSAMINYL__45__13__45__ETCETERA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__14553_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_UDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_i__45__Antigens_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15277" name="RXN-15277" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7434</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_UDP__45__N__45__ACETYL__45__D__45__GLUCOSAMINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_i__45__Antigens_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__16494_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_UDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15278" name="RXN-15278" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7434</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__16494_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__14553_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_UDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_I__45__antigens_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15288" name="luteolin-7-O-diglucuronide peroxidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_001880) or (Ec-05_002520) or (Ec-24_002370) or (Ec-14_006530) or (Ec-02_003170) or (Ec-11_003410) or (Ec-11_001530) or (Ec-08_006020) or (Ec-28_003740) or (Ec-26_000310) or (Ec-19_000230) or (Ec-02_000470) or (Ec-20_002770) or (Ec-02_001210) or (Ec-06_003550) or (Ec-00_008210) or (Ec-00_008220) or (Ec-14_002880) or (Ec-17_002430) or (Ec-02_001740) or (Ec-04_004690) or (Ec-19_001450) or (Ec-00_008250) or (Ec-16_000240) or (Ec-24_002030) or (Ec-05_003380) or (Ec-00_010030) or (Ec-17_002450) or (Ec-00_008240) or (Ec-27_004950)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7445</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_HYDROGEN__45__PEROXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_LUTEOLIN__45__7__45__O__45__BETA__45__D__45__DIGLUCURONIDE_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_a__45__radical__45__of__45__luteolin__45__7__45__iOi__45__diglucuronid_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15345" name="RXN-15345" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__15318_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__16551_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15346" name="RXN-15346" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__16551_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__15895_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15348" name="RXN-15348" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5285</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_HS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXIDIZED__45__GLUTATHIONE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__11281_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLUTATHIONE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15378" name="Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-05_003640) or (Ec-27_006560) or (Ec-07_002870) or (Ec-11_000360) or (Ec-07_007310) or (Ec-21_003470)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__9612_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SUC_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_FUM_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__15301_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15447" name="RXN-15447" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_E__45___c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_PROTON_e" stoichiometry="2" constant="false"/>
          <speciesReference species="M_PLASTOQUINONE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Plastoquinols_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15451" name="RXN-15451" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="4" constant="false"/>
          <speciesReference species="M_PLASTOQUINONE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_E__45___c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Plastoquinols_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_e" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15468" name="RXN-15468" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_E__45___c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Oxidized__45__ferredoxins_e" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Reduced__45__ferredoxins_e" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15490" name="RXN-15490" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfProducts>
          <speciesReference species="M_Light_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15509" name="RXN-15509" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_23__45__DIPHOSPHOGLYCERATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Protein__45__Histidines_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__16758_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Protein__45__pi__45__phospho__45__L__45__histidines_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15510" name="RXN-15510" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Protein__45__pi__45__phospho__45__L__45__histidines_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__PG_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_23__45__DIPHOSPHOGLYCERATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Protein__45__Histidines_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15511" name="RXN-15511" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6405</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Protein__45__Histidines_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_23__45__DIPHOSPHOGLYCERATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Protein__45__pi__45__phospho__45__L__45__histidines_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_G3P_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15512" name="RXN-15512" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Protein__45__pi__45__phospho__45__L__45__histidines_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__16758_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_23__45__DIPHOSPHOGLYCERATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Protein__45__Histidines_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15513" name="RXN-15513" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-1622 , P122-PWY , ANAGLYCOLYSIS-PWY , PWY-5484 , PWY66-399 , GLYCOLYSIS</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_2__45__PG_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_G3P_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15556" name="Ubiquitin-conjugating enzyme E2" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-08_003600) or (Ec-08_002220) or (Ec-28_000490) or (Ec-13_002970) or (Ec-00_001460) or (Ec-10_003200) or (Ec-16_005210) or (Ec-09_004750) or (Ec-12_005810) or (Ec-08_005320) or (Ec-09_003260) or (Ec-08_005090) or (Ec-26_004480) or (Ec-14_005080)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7511</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_S__45__ubiquitinyl__45__UAP__45__E1__45__L__45__cysteine_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Ubiquitin__45__carrier__45__protein__45__E2__45__L__45__cysteine_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_S__45__ubiquitinyl__45__UCP__45__E2__45__L__45__cysteine_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Ubiquitin__45__activating__45__protein__45__E1__45__L__45__cys_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15559" name="RXN-15559" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7511</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_S__45__ubiquitinyl__45__UCP__45__E2__45__L__45__cysteine_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HECT__45__Ubiquitin__45__carrier__45__protein__45__E3__45__L__45__cys_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_S__45__ubiquitinyl__45__HECT__45__E3__45__UCP__45__L__45__cysteine_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Ubiquitin__45__carrier__45__protein__45__E2__45__L__45__cysteine_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15560" name="RXN-15560" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7511</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_S__45__ubiquitinyl__45__HECT__45__E3__45__UCP__45__L__45__cysteine_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Protein__45__L__45__lysine_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTEIN__45__N__45__UBIQUITYL__45__LYSINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HECT__45__Ubiquitin__45__carrier__45__protein__45__E3__45__L__45__cys_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15561" name="RXN-15561" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7511</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_S__45__ubiquitinyl__45__UCP__45__E2__45__L__45__cysteine_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Protein__45__L__45__lysine_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTEIN__45__N__45__UBIQUITYL__45__LYSINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Ubiquitin__45__carrier__45__protein__45__E2__45__L__45__cysteine_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15563" name="RXN-15563" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7511</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_S__45__ubiquitinyl__45__UAP__45__E1__45__L__45__cysteine_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_N__45__terminal__45__specific__45__UCP__45__E2__45__L__45__cysteine_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Ubiquitin__45__activating__45__protein__45__E1__45__L__45__cys_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_S__45__ubi__45__N__45__term__45__specific__45__UCP__45__E2__45__L__45__cysteine_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15564" name="RXN-15564" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7511</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_S__45__ubi__45__N__45__term__45__specific__45__UCP__45__E2__45__L__45__cysteine_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_N__45__terminal__45__Amino__45__Acids_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_N__45__terminal__45__specific__45__UCP__45__E2__45__L__45__cysteine_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_N__45__terminal__45__ubiquitinyl__45__proteins_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15587" name="Aryl sulfotransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_007310) or (Ec-06_007300) or (Ec-06_007320) or (Ec-26_003630) or (Ec-00_005410)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_INDOXYL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PAPS_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__16817_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__5__45__ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15588" name="P-loop containing nucleoside triphosphate hydrolase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_007310) or (Ec-06_007300) or (Ec-06_007320) or (Ec-26_003630) or (Ec-00_005410)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__108_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PAPS_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__16819_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__5__45__ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15589" name="Aryl sulfotransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_007310) or (Ec-06_007300) or (Ec-06_007320) or (Ec-26_003630) or (Ec-00_005410)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__14115_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PAPS_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__16825_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__5__45__ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15635" name="3-methyl-2-oxobutanoate hydroxymethyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_001700)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6654</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__KETO__45__ISOVALERATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_METHYLENETETRAHYDROMETHANOPTERIN_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_THMPT_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__DEHYDROPANTOATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15680" name="3-benzyl-3,6-dihydroxy-6-(hydroxymethyl)-diketopiperazine glutathione S-transferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_008030) or (Ec-13_002360) or (Ec-00_008890) or (Ec-13_000340) or (Ec-11_002590) or (Ec-06_002520) or (Ec-00_008870) or (Ec-09_003670) or (Ec-18_001510) or (Ec-27_000400) or (Ec-00_000320) or (Ec-27_000390) or (Ec-00_008370) or (Ec-00_008380) or (Ec-00_008360) or (Ec-24_001030) or (Ec-20_001950) or (Ec-13_002370)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7533</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GLUTATHIONE_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_CPD__45__17045_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__17046_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15681" name="3-benzyl-3,6 -bis(glutathione)- 6-(hydroxymethyl)-diketopiperazine &amp;gamma;-glutamyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_002460)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7533</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__17046_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_5__45__OXOPROLINE_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_CPD__45__17047_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15684" name="FAD-dependent 3-benzyl-3,6 -dithio-6-(hydroxymethyl)-diketopiperazine dithiol oxidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_005200) or (Ec-06_005300) or (Ec-14_006970)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7533</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__17049_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__17050_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HYDROGEN__45__PEROXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15733" name="2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_000230)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6148</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__16953_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__16954_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15740" name="glycerol-3-phosphate dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_003310)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY0-1582 , PWY0-1581</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GLYCEROL__45__3P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Menaquinones_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_DIHYDROXY__45__ACETONE__45__PHOSPHATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Menaquinols_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15745" name="glycerol-3-phosphate dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_003310)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ETR__45__Quinones_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLYCEROL__45__3P_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ETR__45__Quinols_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DIHYDROXY__45__ACETONE__45__PHOSPHATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15815" name="RXN-15815" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_E__45___c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Cytochromes__45__C__45__Oxidized_e" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Cytochromes__45__C__45__Reduced_e" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15816" name="Cytochrome c1" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_002540) or (Ec-18_002810) or (Ec-25_001440) or (Ec-21_004500) or (Ec-08_003040)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ETR__45__Quinols_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Cytochromes__45__C__45__Oxidized_e" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_ETR__45__Quinones_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Cytochromes__45__C__45__Reduced_e" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15829" name="Cytochrome c1" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_002540) or (Ec-18_002810) or (Ec-25_001440) or (Ec-21_004500) or (Ec-08_003040)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6692</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Reduced__45__CycA1__45__cytochromes_e" stoichiometry="2" constant="false"/>
          <speciesReference species="M_Ubiquinones_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="4" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Oxidized__45__CycA1__45__cytochromes_e" stoichiometry="2" constant="false"/>
          <speciesReference species="M_Ubiquinols_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_e" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15830" name="cytochrome-c oxidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_005020) or (Ec-01_001120) or (Ec-07_006760)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6692</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="8" constant="false"/>
          <speciesReference species="M_Cytochromes__45__C__45__Reduced_e" stoichiometry="4" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Cytochromes__45__C__45__Oxidized_e" stoichiometry="4" constant="false"/>
          <speciesReference species="M_PROTON_e" stoichiometry="4" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15831" name="RXN-15831" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Oxidized__45__CycA1__45__cytochromes_e" stoichiometry="1" constant="false"/>
          <speciesReference species="M_E__45___c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Reduced__45__CycA1__45__cytochromes_e" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15881" name="Aminotransferase class V domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_003740) or (Ec-22_000950) or (Ec-21_005640)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7250</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CYS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__Cysteine__45__Desulfurases_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_L__45__ALPHA__45__ALANINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Persulfurated__45__L__45__cysteine__45__desulfurases_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15889" name="holo-[acyl-carrier-protein] synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_004620) or (Ec-01_000130)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: ENTBACSYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Apo__45__EntF_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__5__45__ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Holo__45__EntF_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__15910" name="Glucosidase 2 subunit beta" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-04_003730) or (Ec-23_001860) or (Ec-01_006760)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-842</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MALTOSE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Glucopyranose_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16016" name="RXN-16016" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
            <p>SUBSYSTEM: PWY-7583</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="22" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="14" constant="false"/>
          <speciesReference species="M_MALONYL__45__COA_c" stoichiometry="9" constant="false"/>
          <speciesReference species="M_ACETYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CO__45__A_c" stoichiometry="10" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="9" constant="false"/>
          <speciesReference species="M_ARACHIDONIC_ACID_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="14" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="8" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__1602" name="RXN-1602" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: LIPAS-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_1__45__2__45__Diglycerides_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Fatty__45__Acids_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__409_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16024" name="Glycerol-3-phosphate O-acyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_003960)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7587</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Stearoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLYCEROL__45__3P_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD0__45__2113_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16025" name="1-acyl-sn-glycerol-3-phosphate acyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_003240) or (Ec-26_001280) or (Ec-02_006160) or (Ec-12_004670)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD0__45__2113_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Palmitoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ACP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__17273_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16027" name="Monogalactosyldiacylglycerol synthase, family GT28" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_002880) or (Ec-26_002980) or (Ec-20_002530)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__17272_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__14553_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__2187_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_UDP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__1603" name="RXN-1603" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: LIPAS-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__409_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__504_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16032" name="1-acyl-sn-glycerol-3-phosphate acyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_003240) or (Ec-26_001280) or (Ec-02_006160) or (Ec-12_004670)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7589</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PALMITYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACYL__45__SN__45__GLYCEROL__45__3P_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_2__45__Palmitoyl__45__L__45__Phosphatidate_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16041" name="Lyso-phosphatidylcholine acyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_002160)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6958</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__17278_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__14392_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Glycerolipids_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16042" name="Lyso-phosphatidylcholine acyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_002160)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6958</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__14394_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Glycerolipids_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__17281_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16043" name="Lyso-phosphatidylcholine acyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_002160)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5353</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Gamma__45__linolenoyl__45__groups_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_GAMMA__45__LINOLENOYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Glycerolipids_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16044" name="Lyso-phosphatidylcholine acyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_002160)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5353</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__14407_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Glycerolipids_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__17283_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16045" name="Lyso-phosphatidylcholine acyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_002160)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5995</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Linoleoyl__45__groups_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__18_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Glycerolipids_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16065" name="Cytochrome b5-like heme/steroid binding domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-24_002300)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_FERROCYTOCHROME__45__B5_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PALMITYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_FERRICYTOCHROME__45__B5_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_CPD__45__17313_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16066" name="1-acyl-sn-glycerol-3-phosphate acyltransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_003240) or (Ec-26_001280) or (Ec-02_006160) or (Ec-12_004670)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ACYL__45__SN__45__GLYCEROL__45__3P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Long__45__Chain__45__Acyl__45__CoAs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__PHOSPHATIDATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16067" name="1-acyl-sn-glycerol-3-phosphate acyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_003240) or (Ec-26_001280) or (Ec-02_006160) or (Ec-12_004670)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7587</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Long__45__Chain__45__Acyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD0__45__2113_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_1__45__Stearoyl__45__L__45__Phosphatidate_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16076" name="1-acyl-sn-glycerol-3-phosphate acyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_003240) or (Ec-26_001280) or (Ec-02_006160) or (Ec-12_004670)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Stearoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD0__45__2113_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ACP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD0__45__1423_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16077" name="1-acyl-sn-glycerol-3-phosphate acyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_003240) or (Ec-26_001280) or (Ec-02_006160) or (Ec-12_004670)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Oleoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD0__45__2113_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ACP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__17319_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16079" name="RXN-16079" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7726 , PWY-7728</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MALONYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ARACHIDONYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__17324_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16081" name="RXN-16081" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7726</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__17323_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MALONYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__17329_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16082" name="RXN-16082" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7606</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_MALONYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__14426_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__17332_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16094" name="RXN-16094" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
            <p>SUBSYSTEM: PWY-6598 , PWY-7725 , PWY-7601</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MALONYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__18_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__17346_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16095" name="RXN-16095" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
            <p>SUBSYSTEM: PWY-6598 , PWY-7725 , PWY-7601</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__17346_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__17347_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16096" name="RXN-16096" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
            <p>SUBSYSTEM: PWY-6598 , PWY-7725 , PWY-7601</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__17347_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__17348_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16097" name="RXN-16097" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
            <p>SUBSYSTEM: PWY-6598 , PWY-7725 , PWY-7601</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__17348_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__12646_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16103" name="RXN-16103" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7727 , PWY-7606</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__17312_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Glycerolipids_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__17355_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16112" name="RXN-16112" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7726 , PWY-7728</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__17324_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__17367_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16113" name="RXN-16113" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7726 , PWY-7728</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__17367_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__17368_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16114" name="RXN-16114" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7726 , PWY-7728</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__17368_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__17323_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16117" name="Glycerol-3-phosphate O-acyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_003960)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6453</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GLYCEROL__45__3P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__17370_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__17372_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16118" name="1-acyl-sn-glycerol-3-phosphate acyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_003240) or (Ec-26_001280) or (Ec-02_006160) or (Ec-12_004670)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6453</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__17372_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__17371_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__17373_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16129" name="RXN-16129" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7606</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__17332_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__17382_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16130" name="RXN-16130" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7606</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__17382_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__17383_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16131" name="RXN-16131" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7606</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__17383_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__17331_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16132" name="Cytochrome b5-like heme/steroid binding domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-24_002300)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7606</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__17331_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FERROCYTOCHROME__45__B5_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_FERRICYTOCHROME__45__B5_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_CPD__45__17385_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16133" name="6-phosphogluconate dehydrogenase, C-terminal-like" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_005290) or (Ec-14_006530)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__3__45__HYDROXYACYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_3__45__KETOACYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16134" name="Acyl-CoA oxidase/dehydrogenase, central domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_004320) or (Ec-22_002920) or (Ec-08_006390)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7606</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__17385_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_HYDROGEN__45__PEROXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__17386_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16135" name="ClpP/crotonase-like domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_001380) or (Ec-16_001250) or (Ec-16_003560) or (Ec-14_006530)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7606</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__17386_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__17387_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16136" name="RXN-16136" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7606</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__17387_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__17388_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16137" name="RXN-16137" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7606</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__17388_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ACETYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__17312_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16138" name="phospholipase A2" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-04_004650) or (Ec-21_005150)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY66-395 , PWY66-397</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__17355_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__10244_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Glycerolipids_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16139" name="phospholipase A2" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-04_004650) or (Ec-21_005150)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY66-394</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__17282_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Glycerolipids_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_5Z8Z11Z14Z17Z__45__EICOSAPENTAENOATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16150" name="Lyso-phosphatidylcholine acyltransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_002160)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6433</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Glycerolipids_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__15365_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__17397_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16151" name="Lyso-phosphatidylcholine acyltransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_002160)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7618 , PWY-6433</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__15364_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Glycerolipids_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__17396_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16152" name="Lyso-phosphatidylcholine acyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_002160)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6433</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__15366_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Glycerolipids_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__17400_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16157" name="Lyso-phosphatidylcholine acyltransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_002160)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6433</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__15367_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Glycerolipids_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__17399_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16158" name="Lyso-phosphatidylcholine acyltransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_002160)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6433</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Glycerolipids_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__15363_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__17404_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16165" name="Methionyl-tRNA synthetase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_002540) or (Ec-18_004570)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: TRNA-CHARGING-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_MET_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Initiation__45__tRNAmet_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__methionyl__45__tRNAfmet_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16226" name="Sulfatase-modifying factor 2 precursor" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-20_001020)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Thiols_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_Sulfatase__45__L__45__cysteine_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Protein__45__formylglycine_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Disulfides_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__1623" name="1-acyl-sn-glycerol-3-phosphate acyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_003240) or (Ec-26_001280) or (Ec-02_006160) or (Ec-12_004670)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5667 , TRIGLSYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Long__45__Chain__45__Acyl__45__CoAs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACYL__45__SN__45__GLYCEROL__45__3P_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__PHOSPHATIDATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16261" name="phosphatidylinositol phospholipase C" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_005750)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_L__45__1__45__phosphatidyl__45__inositols_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_D__45__MYO__45__INOSITOL__45__1__45__MONOPHOSPHATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DIACYLGLYCEROL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16313" name="RXN-16313" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7511</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_S__45__ubiquitinyl__45__E3__45__independent__45__E2__45__Cys_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Protein__45__L__45__lysine_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTEIN__45__N__45__UBIQUITYL__45__LYSINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_E3__45__independent__45__Ubiquitin__45__E2__45__L__45__cysteine_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16314" name="RXN-16314" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7511</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_E3__45__independent__45__Ubiquitin__45__E2__45__L__45__cysteine_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_S__45__ubiquitinyl__45__UAP__45__E1__45__L__45__cysteine_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_S__45__ubiquitinyl__45__E3__45__independent__45__E2__45__Cys_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Ubiquitin__45__activating__45__protein__45__E1__45__L__45__cys_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16317" name="Mitogen-activated protein kinase kinase (MAP2K)" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-08_005740)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_MAP__45__Kinase__45__L__45__Tyr_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_MAP__45__Kinase__45__L__45__Phosphotyrosine_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16378" name="Fatty acid hydroxylase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_003780)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_FERROCYTOCHROME__45__B5_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_Delta7__45__Steroids_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_FERRICYTOCHROME__45__B5_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_Delta5__45__Delta7__45__Steroids_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16380" name="long chain acyl-coA synthetase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_008720) or (Ec-03_003710) or (Ec-01_001560) or (Ec-02_006430)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5989</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_STEARIC_ACID_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_STEAROYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16389" name="long chain acyl-coA synthetase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_003710) or (Ec-12_008720) or (Ec-01_001560) or (Ec-02_006430)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-1121 , PWY-321 , PWY-6733</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_16__45__HYDROXYPALMITATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__17621_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16393" name="long chain acyl-coA synthetase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_008720) or (Ec-02_006430) or (Ec-01_001560) or (Ec-03_003710)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5971</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DODECANOATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_LAUROYLCOA__45__CPD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16401" name="long chain acyl-coA synthetase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_008720) or (Ec-03_003710) or (Ec-01_001560) or (Ec-02_006430)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6733</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__17640_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__17641_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16402" name="long chain acyl-coA synthetase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_003710) or (Ec-12_008720) or (Ec-01_001560) or (Ec-02_006430)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6733</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_18__45__HYDROXYOLEATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__17370_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__1641" name="RXN-1641" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7416 , TRIGLSYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_DIACYLGLYCEROL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PHOSPHATIDYLCHOLINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Triacylglycerols_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__Lysophosphatidylcholines_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16415" name="long chain acyl-coA synthetase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_006430) or (Ec-12_008720) or (Ec-01_001560) or (Ec-03_003710)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Very__45__long__45__chain__45__fatty__45__acids_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_VERY__45__LONG__45__CHAIN__45__FATTY__45__ACYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16418" name="long chain acyl-coA synthetase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_008720) or (Ec-02_006430) or (Ec-01_001560) or (Ec-03_003710)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-1121</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OCTADEC__45__9__45__ENE__45__118__45__DIOIC__45__ACID_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__17624_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16425" name="Phosphoacetylglucosamine mutase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_005030)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Phosphoacetylglucosamine__45__Mutase__45__P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_N__45__ACETYL__45__D__45__GLUCOSAMINE__45__6__45__P_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Phosphoacetylglucosamine__45__Mutase_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_N__45__ACETYL__45__D__45__GLUCOSAMINE__45__16__45__BIS__45__P_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16426" name="Phosphoacetylglucosamine mutase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_005030)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Phosphoacetylglucosamine__45__Mutase_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_N__45__ACETYL__45__D__45__GLUCOSAMINE__45__16__45__BIS__45__P_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_N__45__ACETYL__45__D__45__GLUCOSAMINE__45__1__45__P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Phosphoacetylglucosamine__45__Mutase__45__P_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16475" name="RXN-16475" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6507</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__13122_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__37_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16558" name="Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_001380) or (Ec-16_001250) or (Ec-16_003560) or (Ec-14_006530)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7656</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__17813_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__17814_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16559" name="RXN-16559" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7656</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__17814_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__17815_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16592" name="RXN-16592" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__5164_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__5164_e" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16593" name="RXN-16593" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__166_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__166_e" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16594" name="RXN-16594" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__171_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__171_e" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16602" name="Dolichol-phosphate mannosyltransferase, family GT2" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_007940)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7661</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GDP__45__MANNOSE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__17858_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_GDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__17894_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16615" name="Beta-ketoacyl synthase, N-terminal" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_000640) or (Ec-12_000650) or (Ec-27_003480) or (Ec-27_002090)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7664</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3Z__45__dodec__45__3__45__enoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MALONYL__45__ACP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_5Z__45__3__45__oxo__45__tetradec__45__5__45__enoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16616" name="NAD(P)-binding domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_007100)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7664</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_5Z__45__3__45__oxo__45__tetradec__45__5__45__enoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3R__45__5Z__45__3__45__hydroxy__45__tetradec__45__5__45__enoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16620" name="Glucose/ribitol dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_002470)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7664</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2E__45__5Z__45__tetradeca__45__2__45__5__45__dienoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_5Z__45__tetradec__45__5__45__enoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16621" name="Thiolase-like, subgroup" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_000640) or (Ec-12_000650) or (Ec-27_003480) or (Ec-27_002090)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7664</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_5Z__45__tetradec__45__5__45__enoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MALONYL__45__ACP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ACP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_7Z__45__3__45__oxo__45__hexadec__45__7__45__enoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16622" name="NAD(P)-binding domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_007100)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7664</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_7Z__45__3__45__oxo__45__hexadec__45__7__45__enoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3R__45__7Z__45__3__45__hydroxy__45__hexadec__45__7__45__enoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16624" name="Glucose/ribitol dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_002470)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7664</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_2E__45__7Z__45__hexadeca__45__2__45__7__45__dienoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_7Z__45__hexadec__45__7__45__enoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16625" name="Beta-ketoacyl synthase, N-terminal" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_000640) or (Ec-12_000650) or (Ec-27_003480) or (Ec-27_002090)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7664</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_7Z__45__hexadec__45__7__45__enoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MALONYL__45__ACP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_9Z__45__3__45__oxo__45__octadec__45__9__45__enoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16626" name="NAD(P)-binding domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_007100)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7664</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_9Z__45__3__45__oxo__45__octadec__45__9__45__enoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_3R__45__9Z__45__3__45__hydroxy__45__octadec__45__9__45__enoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16628" name="Glucose/ribitol dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_002470)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7664</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2E__45__9Z__45__octadeca__45__2__45__9__45__dienoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Oleoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16629" name="Beta-ketoacyl synthase, N-terminal" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_000640) or (Ec-12_000650) or (Ec-27_003480) or (Ec-27_002090)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7663</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Oleoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MALONYL__45__ACP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_11Z__45__3__45__oxo__45__icos__45__11__45__enoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16630" name="NAD(P)-binding domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_007100)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7663</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_11Z__45__3__45__oxo__45__icos__45__11__45__enoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3R__45__11Z__45__3__45__hydroxy__45__icos__45__11__45__enoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16632" name="Glucose/ribitol dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_002470)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7663</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_2E__45__11Z__45__icosa__45__2__45__11__45__dienoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_11Z__45__icos__45__11__45__enoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16637" name="aminoacyl-tRNA hydrolase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_001700) or (Ec-07_007410) or (Ec-07_007430) or (Ec-07_007720)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6308</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Charged__45__CYS__45__tRNAs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_CYS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CYS__45__tRNAs_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16759" name="holo-[acyl-carrier-protein] synthase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_004620) or (Ec-01_000130)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_LYS2__45__peptidyl__45__carrier__45__protein_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_3__45__5__45__ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Holo__45__LYS2__45__peptidyl__45__carrier__45__protein_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16761" name="Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A, N-terminal fragment, family GT66" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-07_004230) or (Ec-14_004370) or (Ec-00_007050) or (Ec-22_002490) or (Ec-00_007060) or (Ec-09_000810)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OLIGOSACCHARIDE__45__DIPHOSPHODOLICHOL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Protein__45__L__45__Asparagine_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__224_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Glycoprotein__45__Asn__45__oligosaccharides_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16765" name="RXN-16765" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__18085_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16909" name="carbamoyl-phosphate synthase (glutamine-hydrolyzing)" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_006110)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7693</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_HCO3_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__18238_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16910" name="carbamoyl-phosphate synthase (glutamine-hydrolyzing)" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_006110)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7693</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__18238_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBAMATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16997" name="Phosphomannomutase/phosphoglucomutase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-17_001480)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GLC__45__1__45__P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Phosphorylated__45__phosphoglucomutase_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ALPHA__45__GLUCOSE__45__16__45__BISPHOSPHATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Phosphoglucomutase_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__16998" name="Phosphomannomutase/phosphoglucomutase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-17_001480)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ALPHA__45__GLUCOSE__45__16__45__BISPHOSPHATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Phosphoglucomutase_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_D__45__glucopyranose__45__6__45__phosphate_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Phosphorylated__45__phosphoglucomutase_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17008" name="1-acyl-sn-glycerol-3-phosphate acyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_003240) or (Ec-12_004670) or (Ec-02_006160) or (Ec-26_001280)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__10269_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_1__45__PALMITOYLGLYCEROL__45__3__45__PHOSPHATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__18350_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17009" name="1-acyl-sn-glycerol-3-phosphate acyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_003240) or (Ec-26_001280) or (Ec-02_006160) or (Ec-12_004670)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__10269_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__18348_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__18351_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17010" name="1-acyl-sn-glycerol-3-phosphate acyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_003240) or (Ec-12_004670) or (Ec-02_006160) or (Ec-26_001280)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_1__45__PALMITOYLGLYCEROL__45__3__45__PHOSPHATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__18346_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__18352_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17011" name="1-acyl-sn-glycerol-3-phosphate acyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_003240) or (Ec-12_004670) or (Ec-02_006160) or (Ec-26_001280)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__18346_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__18348_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__18353_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17012" name="1-acyl-sn-glycerol-3-phosphate acyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_003240) or (Ec-12_004670) or (Ec-02_006160) or (Ec-26_001280)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_1__45__PALMITOYLGLYCEROL__45__3__45__PHOSPHATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Palmitoleoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__18350_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17013" name="1-acyl-sn-glycerol-3-phosphate acyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_003240) or (Ec-12_004670) or (Ec-02_006160) or (Ec-26_001280)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Palmitoleoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__18348_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__18351_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17014" name="1-acyl-sn-glycerol-3-phosphate acyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_003240) or (Ec-26_001280) or (Ec-02_006160) or (Ec-12_004670)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_1__45__PALMITOYLGLYCEROL__45__3__45__PHOSPHATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Cis__45__vaccenoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ACP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__18352_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17015" name="1-acyl-sn-glycerol-3-phosphate acyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_003240) or (Ec-12_004670) or (Ec-02_006160) or (Ec-26_001280)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Cis__45__vaccenoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__18348_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__18353_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17016" name="Glycerol-3-phosphate O-acyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_003960)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Cis__45__vaccenoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLYCEROL__45__3P_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__18348_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17017" name="Glycerol-3-phosphate O-acyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_003960)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GLYCEROL__45__3P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Myristoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ACP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__18379_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17018" name="Glycerol-3-phosphate O-acyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_003960)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GLYCEROL__45__3P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Palmitoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ACP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_1__45__PALMITOYLGLYCEROL__45__3__45__PHOSPHATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17019" name="1-acyl-sn-glycerol-3-phosphate acyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_003240) or (Ec-26_001280) or (Ec-02_006160) or (Ec-12_004670)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__10269_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__18379_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__18380_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17020" name="1-acyl-sn-glycerol-3-phosphate acyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_003240) or (Ec-26_001280) or (Ec-02_006160) or (Ec-12_004670)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__18379_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Palmitoleoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ACP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__18380_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17021" name="1-acyl-sn-glycerol-3-phosphate acyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_003240) or (Ec-26_001280) or (Ec-02_006160) or (Ec-12_004670)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__18379_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_TETRADECANOYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD0__45__1425_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17022" name="1-acyl-sn-glycerol-3-phosphate acyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_003240) or (Ec-12_004670) or (Ec-02_006160) or (Ec-26_001280)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__18379_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Myristoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ACP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD0__45__1425_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17023" name="1-acyl-sn-glycerol-3-phosphate acyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_003240) or (Ec-12_004670) or (Ec-02_006160) or (Ec-26_001280)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_TETRADECANOYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_1__45__PALMITOYLGLYCEROL__45__3__45__PHOSPHATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__18390_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17024" name="1-acyl-sn-glycerol-3-phosphate acyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_003240) or (Ec-12_004670) or (Ec-02_006160) or (Ec-26_001280)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_1__45__PALMITOYLGLYCEROL__45__3__45__PHOSPHATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Myristoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__18390_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__171" name="RXN-171" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_002750) or (Ec-19_002760) or (Ec-08_003510)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-102</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD1F__45__134_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__482_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SUC_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17105" name="RXN-17105" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
            <p>SUBSYSTEM: PWY-7725</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_FERROCYTOCHROME__45__B5_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_CPD__45__12646_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__14407_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_FERRICYTOCHROME__45__B5_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17109" name="RXN-17109" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7726</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__17329_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__18489_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17110" name="RXN-17110" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7726</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__18489_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__18490_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17111" name="RXN-17111" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7726</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__18490_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__17328_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17112" name="Cytochrome b5-like heme/steroid binding domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-24_002300)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7726</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_FERROCYTOCHROME__45__B5_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_CPD__45__17328_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_CPD__45__18491_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FERRICYTOCHROME__45__B5_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17113" name="acyl-CoA oxidase, partial" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_004320) or (Ec-22_002920) or (Ec-08_006390)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7726</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__18491_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__18492_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HYDROGEN__45__PEROXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17114" name="Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_001250) or (Ec-16_003560) or (Ec-06_001380) or (Ec-14_006530)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7726</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__18492_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__18493_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17115" name="RXN-17115" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7726</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__18493_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__18494_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17116" name="RXN-17116" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7726</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__18494_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ACETYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__17365_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17155" name="apo-[acyl carrier protein]" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_000160) or (Ec-24_003900)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7735</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__18550_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_QXC__45__ACP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17203" name="galactosylceramide sulfotransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_002500) or (Ec-10_004010) or (Ec-07_000620) or (Ec-11_001430) or (Ec-08_002500) or (Ec-14_003510) or (Ec-12_003630) or (Ec-09_000360) or (Ec-08_002510) or (Ec-23_003770)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PAPS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_1__45__Alkyl__45__2__45__acyl__45__3D__45__galactosyl__45__sn__45__glycerol_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_3__45__5__45__ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Seminolipids_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17252" name="Pheophorbide a oxygenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_003240) or (Ec-14_003590)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6927 , PWY-5098</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_CPD__45__7061_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Reduced__45__ferredoxins_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Oxidized__45__ferredoxins_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__18666_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17253" name="RXN-17253" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6927 , PWY-5098</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__18666_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__7063_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17352" name="peroxidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_001880) or (Ec-05_002520) or (Ec-24_002370) or (Ec-14_006530) or (Ec-02_003170) or (Ec-11_003410) or (Ec-11_001530) or (Ec-08_006020) or (Ec-28_003740) or (Ec-26_000310) or (Ec-19_000230) or (Ec-02_000470) or (Ec-20_002770) or (Ec-02_001210) or (Ec-06_003550) or (Ec-00_008210) or (Ec-00_008220) or (Ec-04_004690) or (Ec-17_002430) or (Ec-02_001740) or (Ec-14_002880) or (Ec-19_001450) or (Ec-00_008250) or (Ec-16_000240) or (Ec-24_002030) or (Ec-05_003380) or (Ec-00_010030) or (Ec-17_002450) or (Ec-00_008240) or (Ec-27_004950)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5466 , PWY-6824 , PWY-5469</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CONIFERYL__45__ALCOHOL_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_HYDROGEN__45__PEROXIDE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__18761_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17428" name="Geranylgeranyl reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_003520)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADPH_c" stoichiometry="3" constant="false"/>
          <speciesReference species="M_CPD__45__7005_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="3" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADP_c" stoichiometry="3" constant="false"/>
          <speciesReference species="M_CHLOROPHYLL__45__A_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__1744" name="RXN-1744" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
            <p>SUBSYSTEM: PWY-804</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLYCOLLATE_c" stoichiometry="6" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="4" constant="false"/>
          <speciesReference species="M_ACET_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_SUC_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17472" name="biotin synthase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-24_000980)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DETHIOBIOTIN_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Sulfurated__45__Sulfur__45__Acceptors_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_S__45__ADENOSYLMETHIONINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Reduced__45__2Fe__45__2S__45__Ferredoxins_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CH33ADO_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MET_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Unsulfurated__45__Sulfur__45__Acceptors_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__5662_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Oxidized__45__2Fe__45__2S__45__Ferredoxins_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17473" name="biotin synthase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-24_000980)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_S__45__ADENOSYLMETHIONINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__5662_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_MET_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_BIOTIN_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CH33ADO_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17475" name="ClpP/crotonase-like domain" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_001380) or (Ec-16_003560) or (Ec-14_006530) or (Ec-16_001250)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_D__45__3__45__HYDROXYACYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CIS__45__D2__45__ENOYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17573" name="Protein farnesyltransferase subunit beta" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-28_001820)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CAAX__45__proteins_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FARNESYL__45__PP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Farnesylated__45__CAAX__45__proteins_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17608" name="Amidase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_009020) or (Ec-02_005910)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__19042_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__19014_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17625" name="Monooxygenase, FAD-binding" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_003280) or (Ec-00_001320) or (Ec-01_010880)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Red__45__NADPH__45__Hemoprotein__45__Reductases_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACETOL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__19065_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Ox__45__NADPH__45__Hemoprotein__45__Reductases_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17626" name="RXN-17626" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__19065_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_METHYL__45__GLYOXAL_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17627" name="Monooxygenase, FAD-binding" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_003280) or (Ec-00_001320) or (Ec-01_010880)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5451</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Red__45__NADPH__45__Hemoprotein__45__Reductases_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACETOL_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_METHYL__45__GLYOXAL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_Ox__45__NADPH__45__Hemoprotein__45__Reductases_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17631" name="RXN-17631" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_METHYL__45__GLYOXAL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Protein__45__L__45__lysine_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Protein__45__Lysine__45__Aminocarbinol_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17678" name="NAD(P)-binding domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-23_001220)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_2R__45__3R__45__Dihydroflavonols_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__11512_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17688" name="Lyso-phosphatidylcholine acyltransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_002160)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7053</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__17282_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Glycerolipids_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__14018_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17729" name="1-acyl-sn-glycerol-3-phosphate acyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_003240) or (Ec-26_001280) or (Ec-02_006160) or (Ec-12_004670)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7782</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_1__45__Alkyl__45__glycerol__45__3__45__phosphate_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Long__45__Chain__45__Acyl__45__CoAs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_1__45__Alkyl__45__2__45__acyl__45__glycerol__45__3__45__phosphate_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17735" name="phospholipase A2" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_005150) or (Ec-04_004650)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7783</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Alkyl__45__enyl__45__acyl__45__gly__45__P__45__EtOH__45__amines_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_1__45__Alkenylglycerophosphoethanolamines_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Long__45__Chain__45__Fatty__45__Acids_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17736" name="phospholipase A2" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-04_004650) or (Ec-21_005150)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7783</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PLASMENYLCHOLINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Long__45__Chain__45__Fatty__45__Acids_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__563_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17753" name="RXN-17753" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CARBAMOYL__45__P_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__69_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17758" name="RXN-17758" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_BETAINE_ALDEHYDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_E__45___c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CHOLINE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17775" name="acyl-CoA dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_004260) or (Ec-14_001600) or (Ec-03_003490)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OLEOYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ETF__45__Oxidized_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ETF__45__Reduced_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__19172_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17776" name="ClpP/crotonase-like domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_001380) or (Ec-16_001250) or (Ec-16_003560) or (Ec-14_006530)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__19172_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__19171_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17777" name="3-hydroxyacyl-CoA dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_005290) or (Ec-14_006530)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__19171_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__19169_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17779" name="acyl-CoA dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_004260) or (Ec-14_001600) or (Ec-03_003490)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ETF__45__Oxidized_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__19144_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__19170_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ETF__45__Reduced_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17780" name="enoyl-Coenzyme A hydratase/3-hydroxyacyl Coenzyme A dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_001380) or (Ec-16_001250) or (Ec-16_003560) or (Ec-14_006530)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__19170_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__19168_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17781" name="6-phosphogluconate dehydrogenase, C-terminal-like" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_005290) or (Ec-14_006530)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__19168_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__19167_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17783" name="Acyl-CoA dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_004260) or (Ec-14_001600) or (Ec-03_003490)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__15436_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ETF__45__Oxidized_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ETF__45__Reduced_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD0__45__1162_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17784" name="acyl-CoA dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_004260) or (Ec-14_001600) or (Ec-03_003490)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__18346_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ETF__45__Oxidized_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__19163_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ETF__45__Reduced_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17785" name="ClpP/crotonase-like domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_001380) or (Ec-16_001250) or (Ec-16_003560) or (Ec-14_006530)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__19163_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__19159_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17786" name="6-phosphogluconate dehydrogenase, C-terminal-like" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_005290) or (Ec-14_006530)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__19159_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__19160_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17788" name="acyl-CoA dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_004260) or (Ec-14_001600) or (Ec-03_003490)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__10269_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ETF__45__Oxidized_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__19162_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ETF__45__Reduced_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17789" name="enoyl-Coenzyme A hydratase/3-hydroxyacyl Coenzyme A dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_001250) or (Ec-16_003560) or (Ec-06_001380) or (Ec-14_006530)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__19162_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__19155_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17790" name="6-phosphogluconate dehydrogenase, C-terminal-like" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_005290) or (Ec-14_006530)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__19155_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__19158_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17792" name="acyl-CoA dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_004260) or (Ec-14_001600) or (Ec-03_003490)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ETF__45__Oxidized_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__19147_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__19161_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ETF__45__Reduced_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17793" name="3-hydroxyacyl-CoA dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_005290) or (Ec-14_006530)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__19161_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__19154_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17794" name="6-phosphogluconate dehydrogenase, C-terminal-like" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_005290) or (Ec-14_006530)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__19154_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__19157_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17796" name="acyl-CoA dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_004260) or (Ec-14_001600) or (Ec-03_003490)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ETF__45__Oxidized_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__19148_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ETF__45__Reduced_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__19150_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17797" name="6-phosphogluconate dehydrogenase, C-terminal-like" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_005290) or (Ec-14_006530)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__19150_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__19151_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__17798" name="6-phosphogluconate dehydrogenase, C-terminal-like" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_005290) or (Ec-14_006530)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__19151_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__19153_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__1882" name="GDP-mannose 3,5-epimerase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_004510)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY4FS-12 , PWY-5115 , PWY-882 , PWY4FS-13</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GDP__45__MANNOSE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_GDP__45__L__45__GALACTOSE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__1884" name="RXN-1884" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_001700) or (Ec-14_001520) or (Ec-12_007760) or (Ec-27_006410) or (Ec-27_000770)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-882</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_L__45__Galactopyranose_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__330_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__1961" name="tRNA(Ile)-lysidine/2-thiocytidine synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-00_002670)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Cytidine__45__34__45__tRNAIle2_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_LYS_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Lysidine__45__tRNA__45__Ile2_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__2001" name="RXN-2001" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_001480) or (Ec-04_001280)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-6457</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__674_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CINNAMOYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__2006" name="RXN-2006" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_003940)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: P281-PWY , PWY-6458 , PWY-481 , PWY-6443</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__514_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_BENZOYLCOA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACETYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__2043" name="Glycoside hydrolase, catalytic domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-23_003530) or (Ec-19_000430) or (Ec-08_004650)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6788</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CELLULOSE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Cellodextrins_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__21829" name="RXN-21829" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="5" constant="false"/>
          <speciesReference species="M_CYCLOARTENOL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FERROCYTOCHROME__45__B5_c" stoichiometry="6" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="3" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__23708_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FERRICYTOCHROME__45__B5_c" stoichiometry="6" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="4" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__21830" name="RXN-21830" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Esi0147_0062)</p>
            <p>CATEGORIES: MANUAL</p>
            <p>SUBSYSTEM: PWY-8191</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__23708_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__23709_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__21831" name="RXN-21831" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
            <p>SUBSYSTEM: PWY-8191</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__23709_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__12850_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__22" name="Argininosuccinate lyase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_005890)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CANAVANINOSUCCINATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_FUM_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CANAVANINE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__22198" name="RXN-22198" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Esi0044_0110)</p>
            <p>CATEGORIES: MANUAL</p>
            <p>SUBSYSTEM: PWY-8238</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__24185_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__22095_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__22206" name="RXN-22206" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Esi0003_0314)</p>
            <p>CATEGORIES: MANUAL</p>
            <p>SUBSYSTEM: PWY-8238</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__24184_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__24185_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__2425" name="ClpP/crotonase-like domain" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-17_000320) or (Ec-14_006530) or (Ec-06_001380) or (Ec-16_001250) or (Ec-16_003560)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-1361 , PWY0-321</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_3__45__HYDROXYADIPYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_TRANS__45__23__45__DEHYDROADIPYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__2541" name="RXN-2541" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_000990)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-1422</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_HOMOGENTISATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PHYTYL__45__PYROPHOSPHATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MPBQ_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__2542" name="2-methyl-6-phytyl-1,4-benzoquinone methyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_003900)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-1422</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_MPBQ_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_S__45__ADENOSYLMETHIONINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DMPBQ_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADENOSYL__45__HOMO__45__CYS_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__2543" name="RXN-2543" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-1422</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_DMPBQ_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_GAMA__45__TOCOPHEROL_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__2561" name="RXN-2561" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-1422</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_MPBQ_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_DELTA__45__TOCOPHEROL_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__2562" name="RXN-2562" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-18_000910)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-1422</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_S__45__ADENOSYLMETHIONINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DELTA__45__TOCOPHEROL_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_BETA__45__TOCOPHEROL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADENOSYL__45__HOMO__45__CYS_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__2881" name="RXN-2881" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-1622</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_FORMALDEHYDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_THF__45__GLU__45__N_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_METHYLENE__45__THF__45__GLU__45__N_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__2902" name="Methylmalonate-semialdehyde dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_003810) or (Ec-06_003440)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: BETA-ALA-DEGRADATION-I-PWY , P562-PWY , PWY-7574 , PWY-1781</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_MALONATE__45__S__45__ALD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ACETYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__2961" name="RXN-2961" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-1801</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_S__45__HYDROXYMETHYLGLUTATHIONE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_GLUTATHIONE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FORMALDEHYDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__2962" name="Alcohol dehydrogenase, C-terminal" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_001960)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-1801</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_S__45__HYDROXYMETHYLGLUTATHIONE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD__45__P__45__OR__45__NOP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__548_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH__45__P__45__OR__45__NOP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__3142" name="RXN-3142" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_003520)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY1F-FLAVSYN</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="4" constant="false"/>
          <speciesReference species="M_P__45__COUMAROYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MALONYL__45__COA_c" stoichiometry="3" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__3041_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="3" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="4" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__3221" name="RXN-3221" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-00_005930) or (Ec-05_001880)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-6325 , PWY-2002</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__3041_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__3061_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__3341" name="RXN-3341" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: RUMP-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__2961_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_RIBULOSE__45__5P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__34" name="Ureohydrolase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_001100)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-31</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CANAVANINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_UREA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__CANALINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__3422" name="Protein of unknown function DUF858, methyltransferase-like" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_004720)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-2181</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_S__45__ADENOSYLMETHIONINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_5__45__HYDROXY__45__FERULIC__45__ACID_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SINAPATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADENOSYL__45__HOMO__45__CYS_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__3521" name="Haem peroxidase, plant/fungal/bacterial" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_000230) or (Ec-02_001210) or (Ec-02_001740)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-2261</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ASCORBATE_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_HYDROGEN__45__PEROXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__318_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__3523" name="L-ascorbate peroxidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-2261 , PWY-6370</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__318_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ASCORBATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__DEHYDRO__45__ASCORBATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__3661" name="RXN-3661" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-24_002140) or (Ec-00_005820) or (Ec-24_002150) or (Ec-07_007260) or (Ec-00_005850) or (Ec-10_006240)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-5640</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_BENZENE__45__NO2_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CATECHOL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NITRITE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__37" name="RXN-37" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-11_002450)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-0</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__30_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_CPD__45__35_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__3701" name="Geranylgeranyl transferase type-2 subunit beta" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_003530)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROT__45__CYS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GERANYLGERANYL__45__PP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_S__45__GERANYLGERANYL__45__PROTEIN_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__4021" name="RXN-4021" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_003950)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-2541 , PWY-7155</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CYCLOARTENOL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_S__45__ADENOSYLMETHIONINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__696_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADENOSYL__45__HOMO__45__CYS_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__4144" name="4&amp;alpha;-methyl-5&amp;alpha;-ergosta-8,14,24(28)-trien-3&amp;beta;-ol &amp;Delta;14 reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_001280)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-2541</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ALPHA__45__METHYL__45__5__45__ALPHA__45__ERGOSTA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__4081_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__4209" name="Fatty acid hydroxylase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_003780)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-2541</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__4125_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_FERROCYTOCHROME__45__B5_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_CPD__45__4126_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FERRICYTOCHROME__45__B5_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__4210" name="Sterol delta-7 reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-04_004040)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-2541</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__4126_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__4127_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__4225" name="RXN-4225" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-00_005850) or (Ec-10_006240) or (Ec-00_005820)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-2582</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__707_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__3943_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__4231" name="RXN-4231" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-00_005850) or (Ec-10_006240) or (Ec-00_005820)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-2582</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__698_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__3945_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__4303" name="RXN-4303" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_007830)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-2681</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__4211_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__4201_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__4305" name="RXN-4305" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_007830)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-2681</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__4211_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__4203_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__4726" name="RXN-4726" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-14_000870) or (Ec-04_004610)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-2902</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__332_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__12575_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_UDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__4617_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__4733" name="RXN-4733" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-14_000870) or (Ec-04_004610)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-2881</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__4441_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__12575_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_UDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__4618_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__4821" name="RXN-4821" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-2942</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DELTA1__45__PIPERIDEINE__45__2__45__6__45__DICARBOXYLATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_L__45__ALPHA__45__AMINO__45__EPSILON__45__KETO__45__PIMELATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__5061" name="RXN-5061" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-2201 , CODH-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_METHYLENE__45__THF__45__GLU__45__N_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_Reduced__45__ferredoxins_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_5__45__METHYL__45__THF__45__GLU__45__N_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Oxidized__45__ferredoxins_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__527" name="RXN-527" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_002750) or (Ec-19_002760) or (Ec-08_003510)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-5390 , PWY-3101 , PWY-6787</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__474_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_SUC_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__520_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__5285" name="Protochlorophyllide reductase, putative chloroplast precursor" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-20_003900)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: CHLOROPHYLL-SYN</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DIVINYL__45__PROTOCHLOROPHYLLIDE__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_DIVINYLCHLOROPHYLLIDE__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__5341" name="Beta-glucosidase, family GH1" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-20_004800) or (Ec-07_005240) or (Ec-07_001850) or (Ec-26_002410) or (Ec-04_002190)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-3121 , PWY-7091</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_LINAMARIN_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Glucopyranose_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__HYDROXY__45__2__45__METHYLPROPANENITRILE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__5462" name="Alpha-(1,3)-mannosyltransferase, family GT4" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_004420)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ALPHA__45__D__45__MANNOSYLCHITOBIO_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GDP__45__MANNOSE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__5161_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GDP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__5463" name="RXN-5463" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GDP__45__MANNOSE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__5161_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__5162_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GDP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__5464" name="Glycolipid 2-alpha-mannosyltransferase,family GT15" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-05_002900)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__5162_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GDP__45__MANNOSE_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_GDP_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_CPD__45__5164_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__5466" name="Dolichyl-P-Man:Man(5)GlcNAc(2)-PP-dolichyl mannosyltransferase, family GT58" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_007710)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__171_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__5164_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__5165_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DOLICHOLP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__5467" name="Dolichyl-P-Man:Man(5)GlcNAc(2)-PP-dolichyl mannosyltransferase, family GT58" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_007710)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__171_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__5165_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DOLICHOLP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__5166_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__5468" name="Dolichyl-P-Man:Man(5)GlcNAc(2)-PP-dolichyl mannosyltransferase, family GT58" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_007710)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__5166_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__171_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__5167_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DOLICHOLP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__5469" name="Dolichyl-P-Man:Man(5)GlcNAc(2)-PP-dolichyl mannosyltransferase, family GT58" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_007710)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__171_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__5167_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__5168_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DOLICHOLP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__5470" name="RXN-5470" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__166_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__5168_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DOLICHOLP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__5169_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__5471" name="dolichyl-P-Glc:Glc1Man2GlcNAc2-PPdolichol &amp;alpha;-1,3-glucosyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__166_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__5169_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__5170_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DOLICHOLP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__5472" name="dolichyl-phosphate-glucose-glycolipid alpha-glucosyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-18_002280)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__166_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__5170_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_DOLICHOLP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__18076_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__5581" name="aldehyde dehydrogenase [NAD(P)+]" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-11_002450)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-3162</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_INDOLE_ACETALDEHYDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD__45__P__45__OR__45__NOP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADH__45__P__45__OR__45__NOP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_INDOLE_ACETATE_AUXIN_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__5641" name="RXN-5641" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY4FS-6 , PWY-3385 , PWY-7782</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_SER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ETHANOL__45__AMINE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__5682" name="RXN-5682" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
            <p>SUBSYSTEM: PWY-3461</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__659_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_TYR_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__5781" name="RXN-5781" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7367 , PWY3O-450 , PWY-3561 , PWY4FS-2 , PWY-6804</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CDP__45__CHOLINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DIACYLGLYCEROL_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PHOSPHATIDYLCHOLINE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__5821" name="RXN-5821" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-15_002910) or (Ec-15_002920)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-6802 , PWY-7431</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_TYRAMINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_HYDRPHENYLAC__45__CPD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HYDROGEN__45__PEROXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__5822" name="acid phosphatase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-05_004740) or (Ec-05_000260) or (Ec-27_003870) or (Ec-24_000520) or (Ec-21_005990) or (Ec-20_003560) or (Ec-07_000930) or (Ec-20_002470) or (Ec-19_002110) or (Ec-26_006410) or (Ec-00_000940) or (Ec-21_003560) or (Ec-19_000870)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: NADPHOS-DEPHOS-PWY , NAD-BIOSYNTHESIS-II , PWY-5083</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__5841" name="5&apos;-nucleotidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-05_000950) or (Ec-12_005060) or (Ec-15_000820)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: NAD-BIOSYNTHESIS-II , PWY-5381</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NICOTINAMIDE_NUCLEOTIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NICOTINAMIDE_RIBOSE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__5861" name="Uncharacterised domain, di-copper centre" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_003140) or (Ec-12_008160)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-3581 , PWY-6133 , PWY-5399 , PWY-6955</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_TYR_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_L__45__DIHYDROXY__45__PHENYLALANINE_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__600" name="NAD(P)-binding domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_001350) or (Ec-23_001220) or (Ec-12_005240)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY1F-823</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__474_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__590_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__6002" name="aldehyde dehydrogenase [NAD(P)+]" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-11_002450)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-3641</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD__45__P__45__OR__45__NOP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__16618_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADH__45__P__45__OR__45__NOP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MAL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__602" name="RXN-602" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_002750) or (Ec-19_002760) or (Ec-08_003510)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__590_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_SUC_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__591_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__6081" name="RXN-6081" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5938 , PWY-6389</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__ACETO__45__LACTATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Acceptor_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_DIACETYL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Donor__45__H2_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__6201" name="RXN-6201" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5691 , PWY-7394</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__5821_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_S__45__ALLANTOIN_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__6268" name="RXN-6268" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY1F-353 , PWY-7494</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_BETAINE__45__ALDEHYDE__45__HYDRATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_BETAINE_ALDEHYDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__6381" name="RXN-6381" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-15_002910) or (Ec-15_002920)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-3981</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__313_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_HYDROGEN__45__PEROXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__6082_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__6382" name="RXN-6382" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-11_002450)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-5760 , PWY-3981</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD__45__P__45__OR__45__NOP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__6082_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADH__45__P__45__OR__45__NOP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_B__45__ALANINE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__6383" name="RXN-6383" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-17_000320) or (Ec-14_006530)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-3941 , PWY-5744 , PWY-7574 , PWY-5743 , PWY-5789</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_3__45__HYDROXY__45__PROPIONYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACRYLYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__646" name="RXN-646" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_006010)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-7128 , PWY-722 , PWY-6993 , PWY-5033</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MALEAMATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MALEATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__6550" name="RXN-6550" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_002750) or (Ec-19_002760) or (Ec-08_003510)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-102</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD1F__45__137_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_SUC_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__6224_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__6601" name="Gamma-glutamyltranspeptidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_006220)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-4041</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GLUTATHIONE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Amino__45__Acids__45__20_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_5__45__L__45__GLUTAMYL__45__L__45__AMINO__45__ACID_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CYS__45__GLY_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__6622" name="RXN-6622" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_006310)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-7559 , PWY-4041</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CYS__45__GLY_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CYS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLY_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__6642" name="Peptidase M1, alanyl aminopeptidase, C-terminal" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-09_003180)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6842 , PWY-4061</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__6262_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_S__45__Substituted__45__L__45__Cysteines_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLY_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__6883" name="Alternative oxidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-11_004730) or (Ec-05_004910) or (Ec-01_002050)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-4302</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Ubiquinols_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_Ubiquinones_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__701" name="RXN-701" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PAPS_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_3__45__5__45__ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SO3_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__707" name="Sterol delta-7 reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-04_004040)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-2541</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__700_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__706_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__7101" name="RXN-7101" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY0-1264</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_BCCP__45__biotin__45__monomers_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_BCCP__45__dimers_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__711" name="RXN-711" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-17_002880)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-2582 , PWY-699</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__698_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__709_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__715" name="RXN-715" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-00_005850) or (Ec-10_006240) or (Ec-00_005820)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-699</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__713_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__714_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__7163" name="Inositol polyphosphate kinase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-18_000620) or (Ec-16_003350)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6361 , PWY-6554 , PWY-6372 , PWY-6369 , PWY-4661 , PWY-6362</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__1107_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_MI__45__HEXAKISPHOSPHATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__7253" name="Inositol monophosphatase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-04_000760) or (Ec-21_004120) or (Ec-21_001090) or (Ec-15_001780) or (Ec-02_005670) or (Ec-14_006130) or (Ec-10_005870) or (Ec-26_000990) or (Ec-12_001850)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-4702</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__6746_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_MYO__45__INOSITOL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__7421" name="cyclopropane-fatty-acyl-phospholipid synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-28_001010)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-4942</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_S__45__ADENOSYLMETHIONINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Oleoyl__45__lipid_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Lipid__45__dihydrosterculate_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADENOSYL__45__HOMO__45__CYS_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__7607" name="5&apos;-nucleotidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-05_000950) or (Ec-12_005060) or (Ec-15_000820)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6596</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_IMP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_INOSINE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__7609" name="5&apos;-nucleotidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-05_000950) or (Ec-12_005060) or (Ec-15_000820)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6606 , PWY-6608 , PWY-6607</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GMP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GUANOSINE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__761" name="alpha,alpha-trehalose-phosphate synthase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-11_002530)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-881</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ADP__45__D__45__GLUCOSE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ALPHA__45__GLC__45__6__45__P_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_TREHALOSE__45__6P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__7644" name="D-sorbitol 2-dehydrogenase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-18_002860)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-4101</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_SORBITOL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__15382_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__7645" name="RXN-7645" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_004580) or (Ec-07_006660) or (Ec-07_003670)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-5059</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_MALONYL__45__COA_c" stoichiometry="3" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="3" constant="false"/>
          <speciesReference species="M_CINNAMOYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CO__45__A_c" stoichiometry="4" constant="false"/>
          <speciesReference species="M_CPD__45__6993_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="3" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__7647" name="RXN-7647" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-00_005930) or (Ec-05_001880)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-5059</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__6993_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__6991_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__7648" name="RXN-7648" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_002750) or (Ec-19_002760) or (Ec-08_003510)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-5059</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__6991_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SUC_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__6992_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__7658" name="Geranylgeranyl reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_003520)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5063</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GERANYLGERANYL__45__PP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__7002_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__7659" name="Geranylgeranyl reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_003520)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5063</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__7002_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__7003_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__7660" name="Geranylgeranyl reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_003520)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5063</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__7003_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PHYTYL__45__PYROPHOSPHATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__7664" name="Geranylgeranyl reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_003520)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5064</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__7005_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__7004_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__7665" name="Geranylgeranyl reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_003520)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5064</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__7004_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__7006_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__7666" name="Geranylgeranyl reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_003520)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5064</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__7006_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CHLOROPHYLL__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__7676" name="chlorophyllide-a monooxygenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_002880) or (Ec-11_003750) or (Ec-03_003240) or (Ec-14_003590) or (Ec-06_002840) or (Ec-06_002860) or (Ec-28_000110)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5068</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CHLOROPHYLLIDE__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__7015_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__7677" name="71-hydroxychlorophyllide a monooxygenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_002880) or (Ec-11_003750) or (Ec-06_002840) or (Ec-14_003590) or (Ec-03_003240) or (Ec-06_002860) or (Ec-28_000110)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5068</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__7015_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__7014_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__7682" name="xanthine dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-20_000230) or (Ec-20_000210)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6596 , SALVADEHYPOX-PWY , P164-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HYPOXANTHINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_XANTHINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__7716" name="dihydrolipoamide dehydrogenase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_004160) or (Ec-25_000020) or (Ec-21_002300)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5084</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Oxo__45__glutarate__45__dehydrogenase__45__DH__45__lipoyl_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Oxo__45__glutarate__45__dehydrogenase__45__lipoyl_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__7719" name="dihydrolipoamide dehydrogenase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_004160) or (Ec-25_000020) or (Ec-06_009010)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5046</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_BCAA__45__dehydrogenase__45__DH__45__lipoyl_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_BCAA__45__dehydrogenase__45__lipoyl_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__773" name="RXN-773" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-00_005850) or (Ec-10_006240) or (Ec-00_005820)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-2582 , PWY-699</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__710_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__712_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__7737" name="LL-diaminopimelate aminotransferase diaminopimelate aminotransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-14_005830)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5097</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_LL__45__DIAMINOPIMELATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLT_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DELTA1__45__PIPERIDEINE__45__2__45__6__45__DICARBOXYLATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__7740" name="Pheophorbide a oxygenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_003240) or (Ec-14_003590)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_Reduced__45__ferredoxins_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__7061_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__7063_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Oxidized__45__ferredoxins_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__7741" name="Red chlorophyll catabolite reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-18_003740)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6927 , PWY-5098</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Reduced__45__ferredoxins_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_CPD__45__7063_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Oxidized__45__ferredoxins_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_CPD__45__7064_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__7745" name="RXN-7745" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_002120)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-5101</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__7066_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__OXOBUTANOATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__7775" name="RXN-7775" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_002750) or (Ec-19_002760) or (Ec-08_003510)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY1F-823 , PWY-6787</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__6994_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_SUC_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__474_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__7784" name="NAD(P)-binding domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_001350) or (Ec-23_001220) or (Ec-12_005240)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5152</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__7087_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__7088_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__7790" name="Branched chain alpha-keto acid dehydrogenase E1 beta subunit" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_009010)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY66-428 , PWY-5130</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__OXOBUTANOATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROPIONYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__7800" name="RXN-7800" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6871 , LEUSYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__7100_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2K__45__4CH3__45__PENTANOATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__7810" name="Prenyltransferase/squalene oxidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-07_006170)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5132</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__4211_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__7109_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__7105_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__7811" name="Prenyltransferase/squalene oxidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-07_006170)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5132</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__4211_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__METHYL__45__1__45__246__45__TRIHYDROXYPHENYLBUTAN_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__7109_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__7813" name="Prenyltransferase/squalene oxidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-07_006170)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5133 , PWY-5808</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_4__45__PRENYLPHLORISOBUTYROPHENONE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__4211_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__7107_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__7828" name="RXN-7828" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-28_003310) or (Ec-14_000870) or (Ec-04_004610)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-5268 , PWY-5139</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PELARGONIDIN__45__3__45__GLUCOSIDE__45__CMPD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__12575_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__7137_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_UDP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__7835" name="NAD(P)-binding domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_003950)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5138</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__trans__45__4__45__cis__45__dienoyl__45__CoAs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Trans__45__3__45__enoyl__45__CoAs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__7873" name="Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase, family GT54" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-07_006930)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_UDP__45__N__45__ACETYL__45__D__45__GLUCOSAMINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLUCOSAMINYL__45__ETCETERA__45__MANNOSYL__45__R_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_GLUCOSAMINYL__45__14__45__ETCETERA__45__MANNOSYL__45__R_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_UDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__7904" name="long chain acyl-coA synthetase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_003710) or (Ec-12_008720) or (Ec-01_001560) or (Ec-02_006430)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5143 , PWY-5885 , PWY-7033 , PWY-6873 , PWY-6803</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Long__45__Chain__45__Fatty__45__Acids_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Long__45__Chain__45__Acyl__45__CoAs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__7908" name="4-alpha-hydroxytetrahydrobiopterin dehydratase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_001420)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PHENYLALANINE-DEG1-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__5881_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_BIOPTERIN_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__7911" name="NAD(P)-binding domain" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_003950)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_TRANS__45__D2__45__ENOYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_TETRADEHYDROACYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__7913" name="Adenylate kinase/UMP-CMP kinase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-07_003680) or (Ec-14_004920) or (Ec-16_005090) or (Ec-06_003080)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7197</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_DCMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_DCDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__7919" name="hydroxyacylglutathione hydrolase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_010680) or (Ec-04_001020)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__hydroxyacyl__45__glutathiones_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_2__45__Hydroxy__45__carboxylates_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLUTATHIONE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__7922" name="RXN-7922" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_002750) or (Ec-19_002760) or (Ec-08_003510)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-5152</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__7214_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__7087_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SUC_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__7931" name="RXN-7931" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7291</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__7221_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__7222_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__7967" name="shikimate 3-dehydrogenase (NADP+)" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_006010)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD__45__P__45__OR__45__NOP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_QUINATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADH__45__P__45__OR__45__NOP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DEHYDROQUINATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__7968" name="shikimate 3-dehydrogenase (NADP+)" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_006010)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6163</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD__45__P__45__OR__45__NOP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SHIKIMATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADH__45__P__45__OR__45__NOP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__DEHYDRO__45__SHIKIMATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__8001" name="Histidinol dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-20_001280) or (Ec-16_001760)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_HISTIDINOL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="3" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_HIS_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__8028" name="RXN-8028" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_005510)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-5175</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD1F__45__115_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__7414_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__8032" name="3-ketopimelyl-CoA thiolase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-25_001550)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-7401 , CENTBENZCOA-PWY , P321-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__OXOPIMELOYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_GLUTARYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACETYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__8036" name="Beta-glucosidase, family GH1" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-20_004800) or (Ec-07_005240) or (Ec-07_001850) or (Ec-26_002410) or (Ec-04_002190)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5176</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__7417_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Glucopyranose_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__7418_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__8037" name="RXN-8037" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5176</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__7418_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_COUMARIN_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__8038" name="RXN-8038" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_005510) or (Ec-24_002140) or (Ec-24_002150) or (Ec-07_007260) or (Ec-00_005820) or (Ec-00_005850) or (Ec-10_006240)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NEUROSPORENE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__7419_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__8040" name="RXN-8040" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_005510) or (Ec-24_002140) or (Ec-24_002150) or (Ec-07_007260) or (Ec-00_005820) or (Ec-00_005850) or (Ec-10_006240)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NEUROSPORENE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__7422_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__8173" name="RXN-8173" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5324 , PWY-5314 , PWY-5298</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ALLYSINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__7682_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__8228" name="delphinidin 3-O-glucoside 5-O-glucosyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-28_003310) or (Ec-14_000870) or (Ec-04_004610)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-5307</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__7117_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__12575_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__7139_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_UDP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__8281" name="Galactosyl transferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_001650)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5338</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__458_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_4__45__METHYL__45__MYO__45__INOSITOL_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_MYO__45__INOSITOL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__8058_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__8315" name="RXN-8315" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SO3_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_HSO3_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__8340" name="cyclic pyranopterin monophosphate synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_001800)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6823</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GTP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PRECURSOR__45__Z_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__8342" name="molybdopterin synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-11_005720)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6823</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Thiocarboxylated__45__MPT__45__synthases_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PRECURSOR__45__Z_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="4" constant="false"/>
          <speciesReference species="M_CPD__45__4_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MPT__45__Synthases_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__8344" name="molybdopterin hydrolase / adenylyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_003590)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6823</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__4_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__8122_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__8348" name="molybdopterin hydrolase / adenylyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_003590)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6823</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__8122_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__3_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__8123_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__8349_PLANTCYC" name="RXN-8349_PLANTCYC" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADPH_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="3" constant="false"/>
          <speciesReference species="M_MALONYL__45__ACP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__12653_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__8121_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_ACP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__8443" name="RXN-8443" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-13_000610) or (Ec-05_004440) or (Ec-27_003090) or (Ec-04_003890) or (Ec-08_006680) or (Ec-02_003160) or (Ec-03_000050) or (Ec-22_003740) or (Ec-23_004280) or (Ec-04_001900) or (Ec-19_000110) or (Ec-06_001640) or (Ec-13_004630) or (Ec-11_004850) or (Ec-16_003140) or (Ec-04_001940) or (Ec-03_005360) or (Ec-04_001890) or (Ec-12_003120) or (Ec-06_007660) or (Ec-18_001430) or (Ec-06_001650) or (Ec-04_004550) or (Ec-16_004800) or (Ec-25_003640) or (Ec-18_001480) or (Ec-21_005740) or (Ec-20_004730) or (Ec-11_000030) or (Ec-13_004810) or (Ec-19_000270) or (Ec-01_001760) or (Ec-04_002070) or (Ec-02_001910) or (Ec-25_000050) or (Ec-03_000700) or (Ec-02_003690) or (Ec-00_007610) or (Ec-20_002410) or (Ec-19_000380) or (Ec-09_000670) or (Ec-23_000620) or (Ec-25_000800) or (Ec-21_001650) or (Ec-01_003040) or (Ec-00_002000) or (Ec-06_001850) or (Ec-01_002500) or (Ec-13_004620) or (Ec-13_004490) or (Ec-20_001110) or (Ec-13_000540) or (Ec-sdr_f_000110) or (Ec-02_003700) or (Ec-04_001950) or (Ec-18_001580) or (Ec-13_004500) or (Ec-02_003150) or (Ec-08_005990) or (Ec-04_002300) or (Ec-18_002880) or (Ec-15_004850) or (Ec-03_000730) or (Ec-15_003900) or (Ec-03_000770) or (Ec-10_000570) or (Ec-14_002550) or (Ec-06_002270) or (Ec-07_001300) or (Ec-19_003770) or (Ec-13_000550) or (Ec-21_003710) or (Ec-23_000190) or (Ec-01_005280) or (Ec-03_001800) or (Ec-02_001860) or (Ec-13_004470) or (Ec-03_000720) or (Ec-02_003750) or (Ec-10_000810) or (Ec-10_004500) or (Ec-23_000950) or (Ec-02_005360) or (Ec-18_001450) or (Ec-15_004730) or (Ec-13_004610) or (Ec-13_002040) or (Ec-17_001910) or (Ec-17_002300) or (Ec-19_000130) or (Ec-03_000780) or (Ec-25_000790) or (Ec-06_002670) or (Ec-06_001840) or (Ec-01_011660) or (Ec-06_000720) or (Ec-20_003730) or (Ec-03_000140) or (Ec-13_002010) or (Ec-15_004720) or (Ec-23_001960) or (Ec-01_001800) or (Ec-13_004480) or (Ec-09_000980) or (Ec-00_006990) or (Ec-19_000480) or (Ec-06_010590) or (Ec-26_001500) or (Ec-03_000710) or (Ec-23_000730) or (Ec-18_001470) or (Ec-01_011080) or (Ec-04_000460) or (Ec-06_001940) or (Ec-01_001850) or (Ec-15_000530) or (Ec-21_005750) or (Ec-19_001520) or (Ec-20_001460) or (Ec-18_001440) or (Ec-24_000510) or (Ec-11_006290) or (Ec-19_000120) or (Ec-10_004370) or (Ec-15_004840) or (Ec-22_003010) or (Ec-19_000290) or (Ec-12_003110) or (Ec-18_002840) or (Ec-03_001790) or (Ec-02_001850) or (Ec-11_005360) or (Ec-25_002150) or (Ec-02_005150) or (Ec-03_004940) or (Ec-05_003570) or (Ec-02_001820)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-5381</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__8259_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NICOTINATE_NUCLEOTIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__8450" name="RXN-8450" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_002750) or (Ec-19_002760) or (Ec-08_003510)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-5391 , PWY-3101</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__7087_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MYRICETIN_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SUC_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__8483" name="RXN-8483" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6481 , PWY-5399</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_DOPAQUINONE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__8652_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__8497" name="linolenate 9S-lipoxygenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-20_003630) or (Ec-03_000010) or (Ec-20_003620) or (Ec-03_000020)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-5406 , PWY-5408 , PWY-5407 , PWY-6917</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_LINOLENIC_ACID_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__8678_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__8629" name="dihydrolipoamide dehydrogenase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_004160) or (Ec-25_000020)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: GLYCLEAV-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DIHYDROLIPOYL__45__GCVH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTEIN__45__LIPOYLLYSINE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__8630" name="Monooxygenase, FAD-binding" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_003280) or (Ec-00_001320) or (Ec-01_010880)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5451 , PWY-7466</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Red__45__NADPH__45__Hemoprotein__45__Reductases_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACETONE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ACETOL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Ox__45__NADPH__45__Hemoprotein__45__Reductases_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__8631" name="fructose-bisphosphate aldolase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_008040) or (Ec-10_004980) or (Ec-14_001680) or (Ec-10_000880)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY66-373</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_FRU1P_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_DIHYDROXY__45__ACETONE__45__PHOSPHATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLYCERALD_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__8635" name="peroxidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_001880) or (Ec-05_002520) or (Ec-24_002370) or (Ec-14_006530) or (Ec-02_003170) or (Ec-11_003410) or (Ec-11_001530) or (Ec-08_006020) or (Ec-28_003740) or (Ec-26_000310) or (Ec-19_000230) or (Ec-02_000470) or (Ec-20_002770) or (Ec-02_001210) or (Ec-06_003550) or (Ec-00_008210) or (Ec-04_004690) or (Ec-00_008220) or (Ec-14_002880) or (Ec-02_001740) or (Ec-17_002430) or (Ec-19_001450) or (Ec-00_008250) or (Ec-16_000240) or (Ec-24_002030) or (Ec-05_003380) or (Ec-00_010030) or (Ec-17_002450) or (Ec-00_008240) or (Ec-27_004950)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5461</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_HYDROGEN__45__PEROXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__8653_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__8890_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__8642" name="isocitrate dehydrogenase (NADP+)" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-11_003080)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXALO__45__SUCCINATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__8664" name="Indoleamine 2,3-dioxygenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-20_001720)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_D__45__TRYPTOPHAN_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__10488_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__8665" name="Indoleamine 2,3-dioxygenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-20_001720)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7765 , PWY-7717 , PWY-5651 , TRPCAT-PWY , PWY-6309</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_TRP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_N__45__FORMYLKYNURENINE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__8667" name="Catalase-peroxidase haem" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-00_008230) or (Ec-00_010030) or (Ec-02_000470) or (Ec-00_008210)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_HYDROGEN__45__PEROXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Donor__45__H2_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Acceptor_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__8668" name="peptide-methionine (S)-S-oxide reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_007800) or (Ec-03_000880) or (Ec-06_007510) or (Ec-00_003370) or (Ec-05_003050)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Red__45__Thioredoxin_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Protein__45__L__45__methionine__45__S__45__S__45__oxides_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Ox__45__Thioredoxin_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Protein__45__L__45__methionine_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__8675" name="Tetrapyrrole methylase, subdomain 2" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_004170)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5196 , PWY-5194 , PWY-7377 , PWY-7376</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__9038_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_S__45__ADENOSYLMETHIONINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADENOSYL__45__HOMO__45__CYS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DIHYDROSIROHYDROCHLORIN_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__8743" name="Aryldialkylphosphatase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_006880)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5489</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__8973_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__8974_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_P__45__NITROPHENOL_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__8746" name="Aryldialkylphosphatase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_006880)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5490</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PARAOXON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_P__45__NITROPHENOL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_DIETHYLPHOSPHATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__8759" name="sirohydrochlorin cobaltochelatase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_002430)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CO__43__2_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DIHYDROSIROHYDROCHLORIN_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="4" constant="false"/>
          <speciesReference species="M_CPD__45__9039_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__8783" name="Lactonase domain-containing protein" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_002500) or (Ec-21_001990)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY3DJ-35471</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__GULONO__45__1__45__4__45__LACTONE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_L__45__GULONATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__8853" name="sepiapterin reductase [(6R)-tetrahydrobiopterin-forming]" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
            <p>SUBSYSTEM: PWY-5663</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_6__45__PYRUVOYL__45__5678__45__TETRAHYDROPTERIN_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__14053_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__8872" name="Aromatic-ring hydroxylase-like" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_003280) or (Ec-00_001320) or (Ec-01_010880)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5665</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_4__45__HYDROXYBENZALDEHYDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Red__45__NADPH__45__Hemoprotein__45__Reductases_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__7616_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Ox__45__NADPH__45__Hemoprotein__45__Reductases_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__8899" name="RXN-8899" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5708 , PWY-7614 , PWY-5707 , PWY-5706 , PWY-6539</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_2__45__AMINOACRYLATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PYRUVATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__8975" name="phospho-N-acetylmuramoyl-pentapeptide-transferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-07_007020)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5265 , PWY-6471</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__9646_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_C3_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_UMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_C4_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__8988" name="Succinate--CoA ligase (GDP-forming), alpha subunit" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_000030)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5749</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ITACONATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GTP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__1137_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__8991" name="3-isopropylmalate dehydratase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_000170) or (Ec-sdr_f_000030) or (Ec-13_001950)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6871 , LEUSYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_2__45__D__45__THREO__45__HYDROXY__45__3__45__CARBOXY__45__ISOCAPROATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__9451_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__8999" name="Di-trans-poly-cis-decaprenylcistransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-05_002690)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5785</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_DELTA3__45__ISOPENTENYL__45__PP_c" stoichiometry="8" constant="false"/>
          <speciesReference species="M_FARNESYL__45__PP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_UNDECAPRENYL__45__DIPHOSPHATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="8" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9" name="Aspartate/ornithine carbamoyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-00_004630)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CARBAMOYL__45__P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__CANALINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_O__45__UREIDOHOMOSERINE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9003" name="4-hydroxybenzoate nonaprenyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_002140) or (Ec-08_002270) or (Ec-17_003520) or (Ec-18_000990) or (Ec-24_003910) or (Ec-00_007360)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY3O-19 , PWY-7235</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_4__45__hydroxybenzoate_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ALL__45__TRANS__45__HEXAPRENYL__45__DIPHOSPHATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__HEXAPRENYL__45__4__45__HYDROXYBENZOATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__902" name="ClpP/crotonase-like domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_001250) or (Ec-16_003560) or (Ec-06_001380) or (Ec-14_006530)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-81</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_E__45__PHENYLITACONYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBOXYMETHYL__45__HYDROXYPHENYLPROPCOA_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__905" name="6-phosphogluconate dehydrogenase, C-terminal-like" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_005290) or (Ec-14_006530)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-81</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CARBOXYMETHYL__45__HYDROXYPHENYLPROPCOA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_BENZOYLSUCCINYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9140" name="Similar to 2-Epi-5-Epi-Valiolone Synthase (Sedoheptulose 7-Phosphate Cyclase)" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_009700)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7752 , PWY-5818</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_D__45__SEDOHEPTULOSE__45__7__45__P_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__9663_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9157" name="Gamma-glutamyltranspeptidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_006220)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5826</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GLUTATHIONE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__9699_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CYS__45__GLY_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__9700_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9222" name="4-hydroxybenzoate nonaprenyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-00_007360)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5855 , PWY-5873</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_4__45__hydroxybenzoate_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ALL__45__TRANS__45__HEPTAPRENYL__45__DIPHOSPHATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__9852_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9230" name="4-hydroxybenzoate nonaprenyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-00_007360)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5872 , PWY-5857</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_4__45__hydroxybenzoate_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__9610_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__9864_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__924" name="RXN-924" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_E__45___c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9384" name="RXN-9384" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_002140) or (Ec-08_002270) or (Ec-17_003520) or (Ec-18_000990) or (Ec-24_003910)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_HS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_O__45__SUCCINYL__45__L__45__HOMOSERINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HOMO__45__CYS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SUC_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9386" name="Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-15_002360) or (Ec-06_008480)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5921</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GLT_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLN__45__tRNAs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__glutamyl__45__tRNAGln_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9463" name="alpha-1,2-fucosyltransferase, putative" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-22_001510)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5936</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GUANOSINE_DIPHOSPHATE_FUCOSE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Xyloglucans__45__Galactose__45__23_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_XLFG__45__Xyloglucans_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9510" name="NADH:flavin oxidoreductase/NADH oxidase, N-terminal" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-05_006330) or (Ec-19_000340)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7723</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_FMN_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FMNH2_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9514" name="acetoacetyl-[acyl-carrier protein] reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_007100)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5994 , PWY-5971 , PWY-7388</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Acetoacetyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Beta__45__3__45__hydroxybutyryl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9515" name="crotonyl-[acyl-carrier protein] reductase (NADP)" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5994 , PWY-7388</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Crotonyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Butanoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9516" name="3-oxo-hexanoyl-[acyl-carrier protein] synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_000650) or (Ec-27_002090) or (Ec-12_000640) or (Ec-27_003480)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5971 , PWY-7388</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Butanoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MALONYL__45__ACP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_3__45__oxo__45__hexanoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9518" name="3-hydroxyhexanoyl-[acyl-carrier protein] reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_007100)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5971 , PWY-5994</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_3__45__oxo__45__hexanoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_R__45__3__45__hydroxyhexanoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9523" name="3-oxo-octanoyl-[acyl-carrier protein] synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_000650) or (Ec-27_002090) or (Ec-12_000640) or (Ec-27_003480)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5971</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Hexanoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MALONYL__45__ACP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ACP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__Oxo__45__octanoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9524" name="3-oxo-octanoyl-[acyl-carrier protein] reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_007100)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5971 , PWY-5994</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__Oxo__45__octanoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_3__45__Hydroxy__45__octanoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9527" name="3-oxo-decanoyl-[acyl-carrier protein] synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_000650) or (Ec-27_002090) or (Ec-12_000640) or (Ec-27_003480)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5971</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_MALONYL__45__ACP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Octanoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ACP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__oxo__45__decanoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9528" name="3-oxo-decanoyl-[acyl-carrier protein] reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_007100)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5971 , PWY-5994</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_3__45__oxo__45__decanoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Beta__45__hydroxydecanoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9531" name="3-oxo-dodecanoyl-[acyl-carrier protein] synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_000650) or (Ec-27_002090) or (Ec-12_000640) or (Ec-27_003480)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5971</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_MALONYL__45__ACP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Decanoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_3__45__oxo__45__dodecanoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9532" name="3-oxo-dodecanoyl-[acyl-carrier protein] reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_007100)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5971 , PWY-5994</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_3__45__oxo__45__dodecanoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_R__45__3__45__hydroxydodecanoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9533" name="RXN-9533" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
            <p>SUBSYSTEM: PWY-7664 , PWY-5971 , PWY-5994</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_R__45__3__45__hydroxydodecanoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Dodec__45__2__45__enoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9535" name="3-oxoacyl-[acyl-carrier-protein] synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_000650) or (Ec-27_002090) or (Ec-12_000640) or (Ec-27_003480)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5971</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Dodecanoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MALONYL__45__ACP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_3__45__oxo__45__myristoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9536" name="3-oxo-meristoyl-[acyl-carrier protein] reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_007100)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5971 , PWY-5994</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__oxo__45__myristoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_R__45__3__45__hydroxymyristoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9537" name="RXN-9537" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
            <p>SUBSYSTEM: PWY-5971 , PWY-5994</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_R__45__3__45__hydroxymyristoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Tetradec__45__2__45__enoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9539" name="3-oxo-palmitoyl-[acyl-carrier protein] synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_000650) or (Ec-27_002090) or (Ec-12_000640) or (Ec-27_003480)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5971</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_MALONYL__45__ACP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Myristoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__oxo__45__palmitoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9540" name="3-oxo-palmitoyl-[acyl-carrier protein] reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_007100)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5971 , PWY-5994</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__oxo__45__palmitoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_R__45__3__45__Hydroxypalmitoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9546" name="trans-2,3-stearoyl-CoA-reductase (NADPH, B-specific)" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5972</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__10262_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_STEAROYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9548" name="RXN-9548" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
            <p>SUBSYSTEM: PWY-5989</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Stearoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_STEARIC_ACID_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9549" name="RXN-9549" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
            <p>SUBSYSTEM: PWY-5971 , PWY-5994 , PWY-7746</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Palmitoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ACP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PALMITATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9550" name="RXN-9550" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
            <p>SUBSYSTEM: PWY-6282 , PWY-5366</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Palmitoleoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__9245_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9550__91__CCO__45__CYTOSOL__93____45__Palmitoleoyl__45__ACPs__47__WATER__47____47__CPD__45__9245__47__ACP__47__PROTON__46__58__46__" name="RXN-9550[CCO-CYTOSOL]-Palmitoleoyl-ACPs/WATER//CPD-9245/ACP/PROTON.58." reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Palmitoleoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__9245_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9552" name="3-oxo-petroslinoyl-[acyl-carrier protein] reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_007100)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5367</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_3__45__oxo__45__petroselinoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_R__45__3__45__hydroxypetroselinoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9555" name="RXN-9555" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
            <p>SUBSYSTEM: PWY-5973</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Cis__45__vaccenoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ACP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__9247_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9556" name="3-oxo-cis-vaccenoyl-[acyl-carrier protein] reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_007100)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5973</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__oxo__45__cis__45__vaccenoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_R__45__3__45__hydroxy__45__cis__45__vaccenoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9557" name="3-hydroxy-cis-vaccenoyl-[acyl-carrier protein] dehydratase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
            <p>SUBSYSTEM: PWY-5973</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_R__45__3__45__hydroxy__45__cis__45__vaccenoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_cis__45__vaccen__45__2__45__enoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9558" name="Glucose/ribitol dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_002470)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5973</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_cis__45__vaccen__45__2__45__enoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Cis__45__vaccenoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9597" name="primary amine oxidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-15_002920) or (Ec-15_002910)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Primary__45__Amines_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Aldehydes_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HYDROGEN__45__PEROXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9601" name="RXN-9601" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
            <p>SUBSYSTEM: PWY-6001</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FERROCYTOCHROME__45__B5_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_OLEOYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_CPD__45__18_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FERRICYTOCHROME__45__B5_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__961" name="D-ribulose-1,5-bisphosphate cleaving dioxygenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
            <p>SUBSYSTEM: PWY-181</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_D__45__RIBULOSE__45__15__45__P2_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__67_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_G3P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9615" name="Ammonium transporter" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_004450) or (Ec-23_002920) or (Ec-00_010700) or (Ec-16_002330) or (Ec-00_006960) or (Ec-09_003810) or (Ec-04_006550) or (Ec-06_004420) or (Ec-21_004790) or (Ec-05_006780)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_AMMONIUM_e" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9623" name="long chain acyl-coA synthetase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_001560) or (Ec-02_006430) or (Ec-03_003710) or (Ec-12_008720)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5971 , PWY-5972</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PALMITATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PALMITYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9629" name="RXN-9629" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__9965_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ARACHIDIC_ACID_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9632" name="3-oxo-stearoyl-[acyl-carrier protein] synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_000640) or (Ec-12_000650) or (Ec-27_003480) or (Ec-27_002090)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5989</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Palmitoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MALONYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_3__45__oxo__45__stearoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9633" name="3-oxo-stearoyl-[acyl-carrier protein] reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_007100)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5989 , PWY3O-355</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__oxo__45__stearoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_R__45__3__45__hydroxystearoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9634" name="RXN-9634" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
            <p>SUBSYSTEM: PWY-5989 , PWY3O-355</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_R__45__3__45__hydroxystearoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Octadec__45__2__45__enoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9635" name="trans-octadec-2-enoyl-[acyl-carrier-protein] reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_002470)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5989</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Octadec__45__2__45__enoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Stearoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9644" name="long chain acyl-coA synthetase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_008720) or (Ec-03_003710) or (Ec-01_001560) or (Ec-02_006430)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5147 , PWY-6001</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OLEATE__45__CPD_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_OLEOYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9648" name="Beta-ketoacyl synthase, N-terminal" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_000640) or (Ec-12_000650) or (Ec-27_003480) or (Ec-27_002090)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5994</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MALONYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Butanoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__oxo__45__hexanoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9650" name="3-oxoacyl-[acyl-carrier-protein] synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_000640) or (Ec-12_000650) or (Ec-27_003480) or (Ec-27_002090)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5994</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_MALONYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Hexanoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__Oxo__45__octanoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9651" name="Thiolase-like, subgroup" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_000640) or (Ec-12_000650) or (Ec-27_003480) or (Ec-27_002090)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5994</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Octanoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MALONYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__oxo__45__decanoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9652" name="Thiolase-like, subgroup" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_000640) or (Ec-12_000650) or (Ec-27_003480) or (Ec-27_002090)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5994</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_MALONYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Decanoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__oxo__45__dodecanoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9653" name="3-oxoacyl-[acyl-carrier-protein] synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_000640) or (Ec-12_000650) or (Ec-27_003480) or (Ec-27_002090)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5994</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_MALONYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Dodecanoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__oxo__45__myristoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9654" name="Beta-ketoacyl synthase, N-terminal" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_000640) or (Ec-12_000650) or (Ec-27_003480) or (Ec-27_002090)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5994</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Myristoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MALONYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_3__45__oxo__45__palmitoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9655" name="RXN-9655" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
            <p>SUBSYSTEM: PWY-5971 , PWY-5994 , PWY0-862</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Beta__45__hydroxydecanoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Trans__45__D2__45__decenoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9657" name="crotonyl-[acp] reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_002470)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5971</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Crotonyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Butanoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9658" name="trans hex-2-enoyl-[acp]-reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_002470)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5971</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Hex__45__2__45__enoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Hexanoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9659" name="trans oct-2-enoyl-[acp] reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_002470)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5971</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__Octenoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Octanoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9660" name="trans-&amp;Delta;2-decenoyl-[acp]-reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_002470)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5971</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Trans__45__D2__45__decenoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Decanoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9661" name="trans dodec-2-enoyl-[acp] reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_002470)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5971</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Dodec__45__2__45__enoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Dodecanoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9662" name="trans tetradec-2-enoyl-[acp] reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_002470)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5971</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Tetradec__45__2__45__enoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Myristoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9663" name="trans hexadecenoyl-[acp] reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_002470)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5971</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__Hexadecenoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Palmitoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9670" name="Lyso-phosphatidylcholine acyltransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_002160)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7618 , PWY-5995 , PWY-6433 , PWY-5368</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Glycerolipids_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OLEOYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Oleoyl__45__lipid_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9673" name="long chain acyl-coA synthetase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_006430) or (Ec-12_008720) or (Ec-01_001560) or (Ec-03_003710)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6000</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_LINOLEIC_ACID_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__18_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9674" name="Beta-glucosidase, family GH1" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-20_004800) or (Ec-07_005240) or (Ec-07_001850) or (Ec-26_002410) or (Ec-04_002190)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6002 , PWY-7092</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__10277_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Glucopyranose_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__12699_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__969" name="Glycolate Oxidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-23_000460) or (Ec-15_000450) or (Ec-12_004150)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-181</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLYCOLLATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_HYDROGEN__45__PEROXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLYOX_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9725" name="RXN-9725" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_001350) or (Ec-23_001220) or (Ec-12_005240)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-6035</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="3" constant="false"/>
          <speciesReference species="M_CPD__45__591_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADP_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_CPD__45__7630_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9787" name="cysteine:[ThiI sulfur-carrier protein]-L-cysteine sulfurtransferase desulfurase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_003740) or (Ec-22_000950) or (Ec-21_005640)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CYS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Sulfur__45__Carrier__45__Proteins__45__ThiI_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Sulfurylated__45__ThiI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__ALPHA__45__ALANINE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__982" name="Glutaredoxin" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_004790) or (Ec-27_001600) or (Ec-02_000430) or (Ec-05_004040) or (Ec-20_003920) or (Ec-26_003600) or (Ec-21_003380)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-4621 , PWY-4202</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Red__45__Glutaredoxins_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ARSENATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Ox__45__Glutaredoxins_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__763_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9839" name="Mannuronan C-5-epimerase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_000360) or (Ec-20_004700) or (Ec-25_001850) or (Ec-24_002750) or (Ec-27_006700) or (Ec-11_000400) or (Ec-06_006700) or (Ec-08_004820) or (Ec-07_000890) or (Ec-09_003950) or (Ec-19_003150)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6073 , PWY-6082</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Poly__45__beta__45__D__45__Mannuronate_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ALGINATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9896" name="RXN-9896" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-11_002460)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-6100</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_3__45__HYDROXY__45__N6N6N6__45__TRIMETHYL__45__L__45__LYSINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_GLY_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_4__45__TRIMETHYLAMMONIOBUTANAL_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9951" name="isocitrate dehydrogenase (NADP+)" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-11_003080)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_THREO__45__DS__45__ISO__45__CITRATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXALO__45__SUCCINATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__9952" name="phosphogluconate dehydrogenase (decarboxylating)" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_008450)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: OXIDATIVEPENT-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__2961_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_RIBULOSE__45__5P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN__45__MG__45__PROTOPORPHYRIN__45__METHYLESTER__45__SYN" name="magnesium protoporphyrin IX methyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_007810)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5531 , PWY-7159 , CHLOROPHYLL-SYN</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_MG__45__PROTOPORPHYRIN_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_S__45__ADENOSYLMETHIONINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_MG__45__PROTOPORPHYRIN__45__MONOMETHYL__45__ESTER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADENOSYL__45__HOMO__45__CYS_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__1061" name="Chaperonin Cpn10" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-07_002990) or (Ec-10_004830) or (Ec-27_004240) or (Ec-16_004670)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Unfolded__45__Proteins_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_General__45__Protein__45__Substrates_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__1132" name="dihydrolipoamide dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_004160) or (Ec-25_000020)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PYRUVDEHYD-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Pyruvate__45__dehydrogenase__45__dihydrolipoate_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pyruvate__45__dehydrogenase__45__lipoate_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__1133" name="Dihydrolipoamide acetyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-25_000140)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PYRUVDEHYD-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ACETYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pyruvate__45__dehydrogenase__45__dihydrolipoate_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pyruvate__45__dehydrogenase__45__acetylDHlipoyl_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__1134" name="Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-18_003420) or (Ec-23_002710)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PYRUVDEHYD-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PYRUVATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pyruvate__45__dehydrogenase__45__lipoate_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pyruvate__45__dehydrogenase__45__acetylDHlipoyl_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__1147" name="dihydrolipoamide dehydrogenase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_004160) or (Ec-25_000020) or (Ec-21_002300)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5084 , PWY66-398</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_SUC__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Oxo__45__glutarate__45__dehydrogenase__45__DH__45__lipoyl_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Oxo__45__glutarate__45__dehydro__45__suc__45__DH__45__lipoyl_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__1281" name="dihydrouridine synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_000230) or (Ec-18_002590) or (Ec-01_010520)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_tRNA__45__uridines_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_tRNA__45__Dihydrouridines_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__1321" name="queuine tRNA-ribosyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_005570)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6700</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_7__45__AMINOMETHYL__45__7__45__DEAZAGUANINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Guanine34__45__in__45__tRNAs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_tRNA__45__with__45__7__45__aminomethyl__45__7__45__deazaguanine_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GUANINE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__1441" name="NUDIX hydrolase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-07_006940) or (Ec-19_002730)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ADENOSINE_DIPHOSPHATE_RIBOSE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_CPD__45__15317_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__1461" name="coproporphyrinogen oxidase, putative chloroplast precursor" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_005390) or (Ec-08_001470)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: CHLOROPHYLL-SYN , HEME-BIOSYNTHESIS-II , PWY-7159 , PWY0-1415</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_COPROPORPHYRINOGEN_III_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTOPORPHYRINOGEN_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__1602" name="RXN0-1602" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-13_002810)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_DITP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_DIMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__1603" name="RXN0-1603" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-13_002810)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_XTP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_XANTHOSINE__45__5__45__PHOSPHATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__2023" name="tRNA-specific 2-thiouridylase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-28_002930)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Donor__45__H2_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_TusE__45__S__45__sulfanylcysteine_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_tRNA__45__uridine34_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_tRNA__45__2__45__thiouridine34_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Acceptor_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_TusE__45__L__45__cysteine_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__2044" name="6-phosphogluconate dehydrogenase, C-terminal-like" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_005290) or (Ec-14_006530)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-1361 , PWY0-321</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__HYDROXYADIPYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__KETO__45__ADIPYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__2141" name="Beta-ketoacyl synthase, N-terminal" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_000640) or (Ec-12_000650) or (Ec-27_003480) or (Ec-27_002090)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY0-862</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MALONYL__45__ACP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Cis__45__delta__45__3__45__decenoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_b__45__Keto__45__cis__45__D5__45__dodecenoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__2142" name="NAD(P)-binding domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_007100)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY0-862</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_b__45__Keto__45__cis__45__D5__45__dodecenoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_b__45__Hydroxy__45__cis__45__D5__45__dodecenoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__2144" name="RXN0-2144" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
            <p>SUBSYSTEM: PWY0-862</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_b__45__Hydroxy__45__cis__45__D5__45__dodecenoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Trans__45__D3__45__cis__45__D5__45__dodecenoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__2145" name="Glucose/ribitol dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_002470)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY0-862</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Trans__45__D3__45__cis__45__D5__45__dodecenoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Cis__45__Delta5__45__dodecenoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__2161" name="Seryl-tRNA synthetase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-08_002360) or (Ec-24_004300)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY0-901 , PWY-6281</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_tRNA__45__Sec_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_L__45__seryl__45__SEC__45__tRNAs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__2301" name="isovaleryl-CoA dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-14_006780)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: LEU-DEG2-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ETF__45__Oxidized_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ISOVALERYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_3__45__METHYL__45__CROTONYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ETF__45__Reduced_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__2381" name="Tryptophan synthase beta subunit-like PLP-dependent enzyme" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-17_002680) or (Ec-27_001950) or (Ec-24_002360) or (Ec-01_012080) or (Ec-00_008830) or (Ec-06_007490) or (Ec-24_004010) or (Ec-20_002800)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6949 , TRPSYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_INDOLE__45__3__45__GLYCEROL__45__P_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_GAP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_INDOLE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__2382" name="Tryptophan synthase beta subunit-like PLP-dependent enzyme" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-17_002680) or (Ec-27_001950) or (Ec-24_002360) or (Ec-01_012080) or (Ec-00_008830) or (Ec-06_007490) or (Ec-24_004010) or (Ec-20_002800)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: TRPSYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_INDOLE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_TRP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__2601" name="DNA glycosylase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-18_003720) or (Ec-19_001460) or (Ec-16_004990) or (Ec-01_006350) or (Ec-00_001490)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Damaged__45__DNA__45__Pyrimidine_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_DNA__45__containing__45__a__45__Apyrimidinic__45__Sites_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__276" name="RXN0-276" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_001960)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_S__45__HYDROXYMETHYLGLUTATHIONE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__548_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__2921" name="tetrahydrofolylpolyglutamate synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-07_002300) or (Ec-01_004980)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-2161</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_METHYLENE__45__THF__45__GLU__45__N_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLT_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_METHYLENE__45__THF__45__GLU__45__N_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__302" name="2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-25_000990)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7560 , NONMEVIPP-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_2__45__PHOSPHO__45__4__45__CYTIDINE__45__5__45__DIPHOSPHO__45__2__45__C__45__MET_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_2C__45__METH__45__D__45__ERYTHRITOL__45__CYCLODIPHOSPHATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__308" name="Aminotransferase class V domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_003740) or (Ec-22_000950) or (Ec-21_005640)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6892 , PWY0-1021 , PWY-6823 , PWY-6891</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Cysteine__45__Desulfurase__45__L__45__cysteine_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CYS_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_L__45__Cysteine__45__Desulfurase__45__persulfide_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__ALPHA__45__ALANINE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__3201" name="Presenilin/signal peptide peptidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-20_002160)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_cleaved__45__lipoprotein__45__signal__45__peptide_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Peptides__45__holder_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__3542" name="RXN0-3542" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_003360)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_THIAMINE__45__PYROPHOSPHATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_THIAMINE__45__P_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__366" name="guanosine hydrolase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6606 , PWY-6599</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GUANOSINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_D__45__Ribofuranose_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GUANINE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__385" name="RXN0-385" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-13_002810)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_DGTP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DGMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__3962" name="RXN0-3962" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5768 , PWY-7268</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACETALD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ACET_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__4261" name="Helicase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-18_003980) or (Ec-02_002310)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Supercoiled__45__Duplex__45__DNAs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Single__45__Stranded__45__DNAs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__4961" name="DNA polymerase, palm domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-08_004310) or (Ec-10_001440)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DNA__45__N_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Nucleoside__45__Monophosphates_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__5021" name="DNA primase large subunit, eukaryotic/archaeal" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_009490) or (Ec-11_004160) or (Ec-18_001420)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Single__45__Stranded__45__DNAs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Short__45__RNA__45__Fragments_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__5055" name="Acetyl-CoA carboxylase, partial" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_003040) or (Ec-19_003230) or (Ec-20_002520)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY0-1264</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Carboxybiotin__45__BCCP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACETYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MALONYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_BCCP__45__dimers_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__5063" name="tRNA-i(6)A37 thiotransferase enzyme MiaB" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_004930)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_6__45__Dimethylallyladenosine37__45__tRNAs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_S__45__ADENOSYLMETHIONINE_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_Sulfurated__45__Sulfur__45__Acceptors_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Donor__45__H2_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADENOSYL__45__HOMO__45__CYS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__11592_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Unsulfurated__45__Sulfur__45__Acceptors_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Acceptor_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CH33ADO_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MET_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__5073" name="RXN0-5073" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_003360)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ITP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_IDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__5114" name="HAD-like domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-18_001570)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: SERSYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_3__45__P__45__SERINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_SER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__5131" name="transposase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-15_001220)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_IS30__45__Insertion__45__Sequences_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_IS30__45__with__45__Integrated__45__Transposon_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__5144" name="tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_004980)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_S__45__ADENOSYLMETHIONINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_tRNA__45__Containing__45__5AminoMe__45__2__45__ThioUrdines_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADENOSYL__45__HOMO__45__CYS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_tRNA__45__Containing__45__5MeAminoMe__45__2__45__ThioU_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__5180" name="RXN0-5180" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-05_002690) or (Ec-17_003520) or (Ec-18_000990) or (Ec-24_003910) or (Ec-27_002140) or (Ec-08_002270)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_FARNESYL__45__PP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DELTA3__45__ISOPENTENYL__45__PP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD0__45__1028_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__5183" name="Glucosidase 2 subunit beta" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-23_001860) or (Ec-01_006760)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: GLYCOCAT-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MALTOTRIOSE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_MALTOSE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Glucopyranose_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__5217" name="RXN0-5217" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-17_001590)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY0-1303</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_S__45__ADENOSYLMETHIONINAMINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CADAVERINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_5__45__METHYLTHIOADENOSINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD0__45__1065_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__5222" name="cyanase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY0-1471 , CYANCAT-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CARBAMATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__5224" name="Carbonic anhydrase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_001960) or (Ec-22_001150) or (Ec-10_002770) or (Ec-06_004120) or (Ec-27_005680) or (Ec-05_001290) or (Ec-16_004700) or (Ec-07_004610)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWYQT-4429 , PWY-7117 , CYANCAT-PWY , PWY-241 , PWY-6142 , PWY-7115</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_HCO3_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__5234" name="Serine hydroxymethyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-14_004260) or (Ec-24_002640)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ALLO__45__THR_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_GLY_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACETALD_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__5244" name="RXN0-5244" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_E__45___c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_Ubiquinones_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Ubiquinols_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__5245" name="RXN0-5245" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_E__45___c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_FUM_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_SUC_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__5248" name="RXN0-5248" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_E__45___c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__5254" name="RXN0-5254" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_E__45___c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_Menaquinones_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Menaquinols_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__5257" name="RXN0-5257" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_E__45___c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_DIHYDROXY__45__ACETONE__45__PHOSPHATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_GLYCEROL__45__3P_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__5259" name="RXN0-5259" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ETR__45__Quinones_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_E__45___c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ETR__45__Quinols_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__5260" name="sn-glycerol 3-phosphate:ubiquinone oxidoreductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_003310)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6118 , PWY0-1584 , PWY-6952 , PWY-4261 , PWY0-1561</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Ubiquinones_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GLYCEROL__45__3P_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Ubiquinols_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DIHYDROXY__45__ACETONE__45__PHOSPHATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__5265" name="RXN0-5265" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="4" constant="false"/>
          <speciesReference species="M_E__45___c" stoichiometry="4" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__5298" name="D-ribose pyranase RbsD/L-fucose mutarotase FucU" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-18_003960)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: FUCCAT-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__10329_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD0__45__1107_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__5305" name="RXN0-5305" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD0__45__1108_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__15818_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__5330" name="NADH dehydrogenase (ubiquinone)" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-18_003900) or (Ec-05_005740) or (Ec-02_006350)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY0-1568 , PWY-7269 , PWY0-1567 , PWY-7279</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Ubiquinones_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Ubiquinols_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__5359" name="diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-23_001790)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GTP_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_C__45__DI__45__GMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__5393" name="Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_001250) or (Ec-16_003560) or (Ec-06_001380) or (Ec-14_006530)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY0-1337</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD0__45__1162_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD0__45__1163_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__5395" name="Glycoside hydrolase, catalytic domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-23_003530) or (Ec-19_000430) or (Ec-08_004650)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__BETA__45__D__45__GLUCOSYLGLUCOSE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Glucopyranose_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__5398" name="Pseudouridine-5&apos;-phosphate glycosidase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-04_005090)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6019</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_URACIL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__15317_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PSEUDOURIDINE__45__5__45__P_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__5408" name="Inositol monophosphatase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-04_000760) or (Ec-21_004120) or (Ec-21_001090) or (Ec-15_001780) or (Ec-02_005670) or (Ec-14_006130) or (Ec-10_005870) or (Ec-26_000990) or (Ec-12_001850)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-4702</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_D__45__MYO__45__INOSITOL__45__1__45__MONOPHOSPHATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_MYO__45__INOSITOL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__5419" name="Ribosomal L11 methyltransferase, PrmA" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_000570) or (Ec-02_003650) or (Ec-05_007000) or (Ec-20_001900)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Nonmethylated__45__Ribosomal__45__Protein__45__L11s_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_S__45__ADENOSYLMETHIONINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Methylated__45__Ribosomal__45__Protein__45__L11s_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADENOSYL__45__HOMO__45__CYS_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__5462" name="nucleoside-triphosphatase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_006200) or (Ec-03_004860) or (Ec-03_001180) or (Ec-26_004830) or (Ec-01_003690) or (Ec-09_000120) or (Ec-10_003360) or (Ec-17_000870) or (Ec-06_005470) or (Ec-02_001970) or (Ec-01_004650) or (Ec-18_004660) or (Ec-05_004560) or (Ec-02_005730) or (Ec-01_008240) or (Ec-28_000420) or (Ec-05_005340)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GTP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__5468" name="Peroxiredoxin, AhpC-type" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_002340) or (Ec-21_005650)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Alkyl__45__Hydro__45__Peroxides_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Red__45__Thioredoxin_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Ox__45__Thioredoxin_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Alcohols_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__5514" name="1-acylglycerol-3-phosphate O-acyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_003240) or (Ec-12_004670) or (Ec-02_006160) or (Ec-26_001280)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Saturated__45__Fatty__45__Acyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Saturated__45__2__45__Lysophosphatidates_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ACP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__3__45__4__45__Saturated__45__L__45__Phosphatidates_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__5515" name="Phosphatidate cytidylyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-14_002980) or (Ec-17_000480) or (Ec-05_001740) or (Ec-16_001970) or (Ec-14_003790) or (Ec-15_001900)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CTP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__3__45__4__45__Saturated__45__L__45__Phosphatidates_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CDP__45__2__45__3__45__4__45__Saturated__45__Diacylglycerols_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__6274" name="P-loop containing nucleoside triphosphate hydrolase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_007830)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-2781</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__4211_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_tRNA__45__Adenosines__45__37_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_6__45__Dimethylallyladenosine37__45__tRNAs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__6359" name="thiosulfate sulfurtransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_003300) or (Ec-22_001610)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Sulfurated__45__Sulfur__45__Acceptors_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HCN_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Unsulfurated__45__Sulfur__45__Acceptors_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HSCN_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__6382" name="inosine triphosphate pyrophosphatase, putative" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-13_002810)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ITP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_IMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__6480" name="ribonuclease P" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-22_001370) or (Ec-01_005810) or (Ec-04_004570) or (Ec-03_005340)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY0-1479</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD0__45__2354_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_tRNAs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_tRNA__45__fragment_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__6490" name="RXN0-6490" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OROTATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_E__45___c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_DI__45__H__45__OROTATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__6491" name="dihydroorotate dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_005670)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5686</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_DI__45__H__45__OROTATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Ubiquinones_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Ubiquinols_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OROTATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__6554" name="dihydroorotate dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_005670)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Menaquinones_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DI__45__H__45__OROTATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_OROTATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Menaquinols_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__6705" name="1-acyl-sn-glycerol-3-phosphate acyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_003240) or (Ec-12_004670) or (Ec-02_006160) or (Ec-26_001280)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Palmitoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_1__45__PALMITOYLGLYCEROL__45__3__45__PHOSPHATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD0__45__1422_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__6725" name="phospholipase A2" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-04_004650) or (Ec-21_005150)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__1__45__PHOSPHATIDYL__45__ETHANOLAMINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__LYSOPHOSPHATIDYLETHANOLAMINES_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Fatty__45__Acids_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__6948" name="Amino-acid N-acetyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-14_006230)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ACETYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MET_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD0__45__2015_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__7005" name="RXN0-7005" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_L__45__DELTA1__45__PYRROLINE_5__45__CARBOXYLATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_E__45___c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="3" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PRO_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__7008" name="proline dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-18_001350)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY0-1544</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Ubiquinones_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PRO_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Ubiquinols_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__DELTA1__45__PYRROLINE_5__45__CARBOXYLATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__7080" name="RXN0-7080" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__12377_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_CTP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_5__45__HYDROXY__45__CTP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__7192" name="Biotin/lipoate A/B protein ligase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-05_005190) or (Ec-00_003530) or (Ec-11_004970) or (Ec-01_008620)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_BIOTIN_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_BIO__45__5__45__AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__722" name="ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_000440) or (Ec-21_002920) or (Ec-06_005570) or (Ec-11_002170) or (Ec-06_005120)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY0-166</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_UDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Reduced__45__NrdH__45__Proteins_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Oxidized__45__NrdH__45__Proteins_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DUDP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__723" name="ribonucleoside-triphosphate reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-04_006460)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY0-166 , PWY-7187</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CTP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Reduced__45__flavodoxins_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_DCTP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Oxidized__45__flavodoxins_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__7230" name="choline dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-00_005920)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CHOLINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ETR__45__Quinones_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ETR__45__Quinols_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_BETAINE_ALDEHYDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__7238" name="long chain acyl-coA synthetase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_006430) or (Ec-01_001560) or (Ec-03_003710) or (Ec-12_008720)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__9247_e" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_e" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__18346_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__7239" name="long chain acyl-coA synthetase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_008720) or (Ec-03_003710) or (Ec-01_001560) or (Ec-02_006430)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_e" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OLEATE__45__CPD_e" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OLEOYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__724" name="ribonucleoside-triphosphate reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-04_006460)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY0-166 , PWY-7187</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_UTP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Reduced__45__flavodoxins_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DUTP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Oxidized__45__flavodoxins_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__7248" name="long chain acyl-coA synthetase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_003710) or (Ec-12_008720) or (Ec-01_001560) or (Ec-02_006430)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_e" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__9245_e" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__10269_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__7250" name="RXN0-7250" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GAP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_GLYCERALD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__745" name="ribonucleoside-triphosphate reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-04_006460)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7220</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Reduced__45__flavodoxins_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Oxidized__45__flavodoxins_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DATP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__746" name="ribonucleoside-triphosphate reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-04_006460)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7222</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Reduced__45__flavodoxins_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GTP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Oxidized__45__flavodoxins_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DGTP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__747" name="ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_000440) or (Ec-21_002920) or (Ec-06_005570) or (Ec-11_002170) or (Ec-06_005120)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7220</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Reduced__45__NrdH__45__Proteins_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_DADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Oxidized__45__NrdH__45__Proteins_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__748" name="ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_000440) or (Ec-21_002920) or (Ec-06_005570) or (Ec-11_002170) or (Ec-06_005120)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7222</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Reduced__45__NrdH__45__Proteins_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_DGDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Oxidized__45__NrdH__45__Proteins_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__882" name="1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, chloroplast precursor" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_003610)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7560</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_2C__45__METH__45__D__45__ERYTHRITOL__45__CYCLODIPHOSPHATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Reduced__45__ferredoxins_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Oxidized__45__ferredoxins_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HYDROXY__45__METHYL__45__BUTENYL__45__DIP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__884" name="4-hydroxy-3-methylbut-2-enyl diphosphate reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_002680)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7560 , NONMEVIPP-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Reduced__45__ferredoxins_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_HYDROXY__45__METHYL__45__BUTENYL__45__DIP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__4211_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Oxidized__45__ferredoxins_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN0__45__901" name="xanthine dehydrogenase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-20_000230) or (Ec-20_000210)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6607 , PWY-6608 , SALVADEHYPOX-PWY , PWY-6538 , PWY-5695 , P164-PWY , PWY-5497 , PWY-6606 , PWY-6596 , PWY-6999</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_XANTHINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_URATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN1A0__45__6303" name="Aldo/keto reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-25_002130) or (Ec-09_001250) or (Ec-27_000770)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY1A0-6325</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Hepta__45__oxo__45__hexadecanoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Actinorhodin__45__Intermediate__45__2_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN1F__45__10" name="Protochlorophyllide reductase, putative chloroplast precursor" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-20_003900)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CHLOROPHYLLIDE__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MONO__45__VINYL__45__PROTOCHLOROPHYLLIDE__45__A_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN1F__45__144" name="RXN1F-144" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-04_002810)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GERANYLGERANYL__45__PP_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_PHYTOENE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN1F__45__147" name="RXN1F-147" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_005510) or (Ec-24_002140) or (Ec-24_002150) or (Ec-07_007260) or (Ec-00_005820) or (Ec-00_005850) or (Ec-10_006240)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-5946</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD1F__45__114_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD1F__45__115_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN1F__45__148" name="RXN1F-148" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_005510) or (Ec-24_002140) or (Ec-24_002150) or (Ec-07_007260) or (Ec-00_005820) or (Ec-00_005850) or (Ec-10_006240)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-5947</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD1F__45__115_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD1F__45__118_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN1F__45__150" name="lycopene beta cyclase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_005510) or (Ec-24_002140) or (Ec-24_002150) or (Ec-07_007260) or (Ec-00_005820) or (Ec-00_005850) or (Ec-10_006240)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7591 , PWY-5943</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD1F__45__114_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD1F__45__126_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN1F__45__151" name="RXN1F-151" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_005510) or (Ec-24_002140) or (Ec-24_002150) or (Ec-07_007260) or (Ec-00_005820) or (Ec-00_005850) or (Ec-10_006240)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-5943</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD1F__45__126_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD1F__45__129_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN1F__45__160" name="ent-7&amp;alpha;-hydroxykaur-16-en-19-oate monooxygenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-00_005850) or (Ec-10_006240) or (Ec-00_005820)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-5034 , PWY-5047</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD1F__45__136_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_CPD1F__45__138_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN1F__45__161" name="GA12-aldehyde monooxygenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-00_005850) or (Ec-10_006240) or (Ec-00_005820)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-5034 , PWY-5047</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD1F__45__138_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD1F__45__95_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN1F__45__162" name="RXN1F-162" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_002750) or (Ec-19_002760) or (Ec-08_003510)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-5070</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD1F__45__95_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_SUC_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD1F__45__97_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN1F__45__163" name="RXN1F-163" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_002750) or (Ec-19_002760) or (Ec-08_003510)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-5070</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD1F__45__97_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD1F__45__120_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SUC_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN1F__45__165" name="RXN1F-165" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_002750) or (Ec-19_002760) or (Ec-08_003510)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-5070</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD1F__45__134_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD1F__45__137_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SUC_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN1F__45__167" name="RXN1F-167" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_002750) or (Ec-19_002760) or (Ec-08_003510)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-5035</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__695_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__10332_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SUC_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN1F__45__168" name="RXN1F-168" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_002750) or (Ec-19_002760) or (Ec-08_003510)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-5035</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__10332_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD1F__45__96_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SUC_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN1F__45__20" name="Magnesium chelatase subunit H, putative chloroplast precursor" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_001580) or (Ec-01_002840) or (Ec-14_006490)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: CHLOROPHYLL-SYN , PWY-7159 , PWY-5531</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTOPORPHYRIN_IX_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MG__43__2_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_MG__45__PROTOPORPHYRIN_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="3" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN1F__45__461" name="RXN1F-461" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-14_000870) or (Ec-04_004610)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-5320 , PWY-7168 , PWY-5348 , PWY-7143</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__12575_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD1F__45__90_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD1F__45__453_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_UDP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN1F__45__462" name="RXN1F-462" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-14_000870) or (Ec-04_004610)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-5321 , PWY-7173 , PWY-5390 , PWY-7172 , PWY-7137 , PWY-7129</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__12575_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__520_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_UDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD1F__45__437_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN1F__45__93" name="RXN1F-93" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_002750) or (Ec-19_002760) or (Ec-08_003510)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-3101 , PWY-6787</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DIHYDROKAEMPFEROL__45__CMPD_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SUC_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD1F__45__90_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN1G__45__1053" name="cis-delta19-3-oxo-C38:1-[acyl-carrier protein] reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWYG-321</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_cis__45__delta19__45__3__45__oxo__45__C38__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_cis__45__delta19__45__3__45__hydroxyC38__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN1G__45__121" name="Cysteinyl-tRNA synthetase/mycothiol ligase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_001440)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY1G-0</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CYS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD1G__45__0_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD1G__45__120_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN1G__45__1435" name="Trehalose 6-phosphate synthase, family GT20 / Trehalose 6-phosphate phosphatase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-22_003320) or (Ec-19_005250) or (Ec-05_002680) or (Ec-08_005270) or (Ec-24_004390) or (Ec-06_003140) or (Ec-11_002540) or (Ec-20_003980)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWYG-321</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD1G__45__768_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD1G__45__1344_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN1G__45__1436" name="Trehalose 6-phosphate synthase, family GT20 / Trehalose 6-phosphate phosphatase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-22_003320) or (Ec-19_005250) or (Ec-05_002680) or (Ec-20_003980) or (Ec-24_004390) or (Ec-08_005270) or (Ec-11_002540) or (Ec-06_003140)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWYG-321</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD1G__45__771_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD1G__45__1345_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN1G__45__1437" name="Trehalose 6-phosphate synthase, family GT20 / Trehalose 6-phosphate phosphatase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-22_003320) or (Ec-19_005250) or (Ec-05_002680) or (Ec-24_004390) or (Ec-08_005270) or (Ec-20_003980) or (Ec-11_002540) or (Ec-06_003140)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWYG-321</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD1G__45__772_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD1G__45__1346_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN1G__45__1438" name="Trehalose 6-phosphate synthase, family GT20 / Trehalose 6-phosphate phosphatase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-22_003320) or (Ec-19_005250) or (Ec-05_002680) or (Ec-24_004390) or (Ec-08_005270) or (Ec-06_003140) or (Ec-11_002540) or (Ec-20_003980)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWYG-321</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD1G__45__773_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD1G__45__1353_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN1G__45__1439" name="Trehalose 6-phosphate synthase, family GT20 / Trehalose 6-phosphate phosphatase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-22_003320) or (Ec-19_005250) or (Ec-05_002680) or (Ec-24_004390) or (Ec-08_005270) or (Ec-20_003980) or (Ec-11_002540) or (Ec-06_003140)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWYG-321</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD1G__45__774_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD1G__45__1354_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN1G__45__157" name="3-oxo-behenoyl-[acyl-carrier protein] reductase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_007100)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_R__45__3__45__hydroxybehenoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_3__45__oxo__45__behenoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN1G__45__163" name="cis-delta11-3-oxo-C30:1-[acyl-carrier protein] reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWYG-321</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_cis__45__delta11__45__3__45__oxo__45__melissoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_cis__45__delta11__45__3__45__hydroxymelissoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN1G__45__240" name="cis-delta9-3-oxo-C28:1-[acyl-carrier protein] reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWYG-321</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_cis__45__delta9__45__3__45__oxo__45__montanoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_cis__45__delta9__45__3__45__hydroxymontanoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN1G__45__2544" name="cis-cyclopropane-&amp;Delta;19-37-hydroxy-38-methyl-C57:1-[acp] synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-28_001010)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWYG-321</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_S__45__ADENOSYLMETHIONINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_cis__45__D19__45__37__45__MOH__45__38__45__Me__45__C57__45__1__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_cis__45__19__45__CP__45__37__45__Mex__45__38__45__Me__45__C59__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADENOSYL__45__HOMO__45__CYS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN1G__45__260" name="cis-delta13-3-oxo-C32:1-[acyl-carrier protein] reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWYG-321</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_cis__45__delta13__45__3__45__oxo__45__lacceroyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_cis__45__delta13__45__3__45__hydroxylacceroyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN1G__45__287" name="cis-delta21-3-oxo-C40:1-[acyl-carrier protein] reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWYG-321</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_cis__45__delta21__45__3__45__oxo__45__C40__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_cis__45__delta21__45__3__45__hydroxyC40__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN1G__45__320" name="RXN1G-320" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
            <p>SUBSYSTEM: PWYG-321</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_R__45__3__45__hydroxyarachidoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_trans__45__delta2__45__arachidoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN1G__45__349" name="NAD(P)-binding domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_007100)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWYG-321</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_3__45__oxo__45__arachidoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_R__45__3__45__hydroxyarachidoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN1G__45__358" name="cis-delta15-3-oxo-C34:1-[acyl-carrier protein] reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWYG-321</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_cis__45__delta15__45__3__45__oxo__45__gheddoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_cis__45__delta15__45__3__45__hydroxygheddoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN1G__45__364" name="cis-delta7-3-oxo-C26:1-[acyl-carrier protein] reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWYG-321</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_cis__45__delta7__45__3__45__oxo__45__cerotoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_cis__45__delta7__45__3__45__hydroxycerotoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN1G__45__3641" name="cis-&amp;Delta;21-39-hydroxy-40-methyl-C59:1-[acp] reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-28_001010)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWYG-321</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_cis__45__D21__45__39__45__oxo__45__40__45__Me__45__C59__45__1__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_S__45__ADENOSYLMETHIONINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADENOSYL__45__HOMO__45__CYS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_cis__45__21__45__CP__45__39__45__keto__45__40__45__Me__45__C60__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN1G__45__368" name="Thiolase-like, subgroup" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_000640) or (Ec-12_000650) or (Ec-27_003480) or (Ec-27_002090)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWYG-321</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Stearoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MALONYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__oxo__45__arachidoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN1G__45__395" name="trans-eicos-2-enoyl-[acyl-carrier protein] reductase (NADPH, B-specific)" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_002470)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWYG-321</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_trans__45__delta2__45__arachidoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Arachidoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN1G__45__4355" name="propionyl-CoA carboxylase, alpha subunit" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_010970)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWYG-321</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD1G__45__277_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HCO3_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD1G__45__332_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN1G__45__445" name="Thiolase-like, subgroup" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_000640) or (Ec-12_000650) or (Ec-27_003480) or (Ec-27_002090)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWYG-321</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Arachidoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MALONYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_3__45__oxo__45__behenoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN1G__45__460" name="Beta-ketoacyl synthase, N-terminal" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_000640) or (Ec-12_000650) or (Ec-27_003480) or (Ec-27_002090)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_MALONYL__45__ACP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__9965_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_3__45__oxo__45__behenoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN1G__45__469" name="3-oxobehenoyl-[acyl-carrier protein] reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_007100)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWYG-321</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__oxo__45__behenoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_R__45__3__45__hydroxybehenoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN1G__45__488" name="trans-docos-2-enoyl-[acyl-carrier protein] reductase (NADPH, B-specific)" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_002470)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWYG-321</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_trans__45__delta2__45__behenoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Behenoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN1G__45__499" name="3-oxo-lignoceroyl-[acyl-carrier protein] synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_000640) or (Ec-12_000650) or (Ec-27_003480) or (Ec-27_002090)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWYG-321</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_MALONYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Behenoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__oxo__45__lignoceroyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN1G__45__508" name="3-oxo-lignoceroyl-[acyl-carrier protein] reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_007100)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWYG-321</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__oxo__45__lignoceroyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_R__45__3__45__hydroxylignoceroyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN1G__45__526" name="trans-tetracos-2-enoyl-[acyl-carrier protein] reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_002470)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWYG-321</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_trans__45__delta2__45__lignoceroyl__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Lignoceroyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN1G__45__72" name="cis-delta5-3-oxo-C24:1-[acyl-carrier protein] reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWYG-321</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_cis__45__delta5__45__3__45__oxo__45__lignoceroyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_cis__45__delta5__45__3__45__hydroxylignoceroyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN1G__45__881" name="cis-delta17-3-oxo-C36:1-[acyl-carrier protein] reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWYG-321</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_cis__45__delta17__45__3__45__oxo__45__C36__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_cis__45__delta17__45__3__45__hydroxyC36__45__ACPs_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN1K__45__87" name="RXN1K-87" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_010600) or (Ec-27_003160)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__787_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__786_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN3DJ__45__11230" name="RXN3DJ-11230" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_002920)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY3DJ-11470</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD3DJ__45__11366_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PHOSPHORYL__45__ETHANOLAMINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__292_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN3DJ__45__11417" name="Sphingosine kinase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_006490)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY3DJ-11470</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SPHINGOSINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD3DJ__45__11366_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN3DJ__45__25" name="Sphingosine-1-phosphate phosphatase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-00_007030)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY3DJ-11470</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD3DJ__45__11366_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_SPHINGOSINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN3O__45__130" name="Cytochrome P450" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_006240)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6074</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="3" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="3" constant="false"/>
          <speciesReference species="M_LANOSTEROL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="4" constant="false"/>
          <speciesReference species="M_FORMATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="3" constant="false"/>
          <speciesReference species="M_44__45__DIMETHYL__45__CHOLESTA__45__812__45__24__45__TRIENOL_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN3O__45__1803" name="Thiolase-like, subgroup" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_002090) or (Ec-12_000640) or (Ec-27_003480) or (Ec-12_000650)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY3O-355</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Palmitoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MALONYL__45__ACP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ACP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__oxo__45__stearoyl__45__ACPs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN3O__45__1983" name="RXN3O-1983" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: P241-PWY , PWY-3081 , LYSINE-AMINOAD-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_HOMO__45__CIT_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HOMO__45__CIS__45__ACONITATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN3O__45__218" name="Fatty acid hydroxylase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_003780)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6075 , PWY-2541</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_EPISTEROL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FERROCYTOCHROME__45__B5_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__700_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_FERRICYTOCHROME__45__B5_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN3O__45__4157" name="RXN3O-4157" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
            <p>SUBSYSTEM: PWY3O-4108</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_TYR_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PYRUVATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_L__45__ALPHA__45__ALANINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_P__45__HYDROXY__45__PHENYLPYRUVATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN490__45__3641" name="proline,2-oxoglutarate-4-dioxygenase (cis-4-hydroxy-L-proline)" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-08_002170) or (Ec-07_001070)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PRO_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_4__45__HYDROXY__45__L__45__PROLINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SUC_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN4FS__45__2" name="Phospholipid methyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-24_001260) or (Ec-18_002350) or (Ec-08_004940)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY4FS-4 , PWY4FS-3 , PWY-6825</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_S__45__ADENOSYLMETHIONINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__160_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADENOSYL__45__HOMO__45__CYS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PHOSPHATIDYLCHOLINE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN66__45__1" name="Catalase-peroxidase haem" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-00_008210) or (Ec-07_004600) or (Ec-02_000470) or (Ec-05_003380) or (Ec-00_010030) or (Ec-11_003410) or (Ec-07_001420) or (Ec-00_008240) or (Ec-00_008230)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY66-162</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_HYDROGEN__45__PEROXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ETOH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ACETALD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN66__45__11" name="24,25-dihydrolanosterol 14-hydroxylase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_006240)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY66-3</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__8606_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__8607_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN66__45__12" name="4,4-dimethyl-14&amp;alpha;-hydroxymethyl-5&amp;alpha;-cholesta-8-en-3&amp;beta;-ol 14-dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_006240)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY66-3</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__8607_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__8608_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN66__45__13" name="4,4-dimethyl-14&amp;alpha;-formyl-5&amp;alpha;-cholesta-8-en-3&amp;beta;-ol deformylase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_006240)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY66-3</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__8608_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FORMATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__8609_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN66__45__14" name="Delta14-sterol reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_001280)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY66-3</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__8609_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__8610_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN66__45__146" name="Aromatic-ring hydroxylase-like" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_003280) or (Ec-00_001320) or (Ec-01_010880)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY66-201</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Red__45__NADPH__45__Hemoprotein__45__Reductases_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NICOTINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__3187_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Ox__45__NADPH__45__Hemoprotein__45__Reductases_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN66__45__161" name="Monooxygenase, FAD-binding" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_003280) or (Ec-00_001320) or (Ec-01_010880)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY66-221</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__2742_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Red__45__NADPH__45__Hemoprotein__45__Reductases_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__2750_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Ox__45__NADPH__45__Hemoprotein__45__Reductases_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN66__45__163" name="Monooxygenase, FAD-binding" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_003280) or (Ec-00_001320) or (Ec-01_010880)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY66-221</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Red__45__NADPH__45__Hemoprotein__45__Reductases_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__2742_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Ox__45__NADPH__45__Hemoprotein__45__Reductases_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__2751_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN66__45__169" name="Monooxygenase, FAD-binding" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_003280) or (Ec-00_001320) or (Ec-01_010880)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY66-221</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Red__45__NADPH__45__Hemoprotein__45__Reductases_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__2742_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Ox__45__NADPH__45__Hemoprotein__45__Reductases_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__3188_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN66__45__18" name="3-beta hydroxysteroid dehydrogenase/isomerase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_001850)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY66-3</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD__45__P__45__OR__45__NOP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__8613_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__8614_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH__45__P__45__OR__45__NOP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN66__45__181" name="Monooxygenase, FAD-binding" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_003280) or (Ec-00_001320) or (Ec-01_010880)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY66-241</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Red__45__NADPH__45__Hemoprotein__45__Reductases_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__3481_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Ox__45__NADPH__45__Hemoprotein__45__Reductases_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__3483_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN66__45__23" name="3-beta hydroxysteroid dehydrogenase/isomerase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_001850)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY66-3</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NAD__45__P__45__OR__45__NOP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__8619_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__8620_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH__45__P__45__OR__45__NOP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN66__45__27" name="Sterol delta-7 reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-04_004040)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY66-4</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__8646_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_DESMOSTEROL__45__CPD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN66__45__281" name="squalene synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-11_001030)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADH__45__P__45__OR__45__NOP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__465_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_SQUALENE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD__45__P__45__OR__45__NOP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN66__45__3" name="RXN66-3" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7387 , PWY66-161 , PWY66-21 , PWY66-162</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACETALD_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACET_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN66__45__303" name="lanosterol 14-hydroxylase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_006240)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY66-341 , PWY66-4</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_LANOSTEROL_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__4568_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN66__45__304" name="14-hydroxylanosterol 14-dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_006240)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY66-341 , PWY66-4</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__4568_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__4573_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN66__45__305" name="14-oxolanosterol deformylase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_006240)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY66-341 , PWY66-4</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__4573_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_44__45__DIMETHYL__45__CHOLESTA__45__812__45__24__45__TRIENOL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FORMATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN66__45__306" name="14-demethyllanosterol &amp;Delta;14 reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_001280)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY66-341 , PWY66-4 , PWY-6074</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_44__45__DIMETHYL__45__CHOLESTA__45__812__45__24__45__TRIENOL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_44__45__DIMETHYL__45__824__45__CHOLESTADIENOL_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN66__45__313" name="3-beta hydroxysteroid dehydrogenase/isomerase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_001850)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY66-341 , PWY66-4 , PWY-6074</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__4577_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD__45__P__45__OR__45__NOP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADH__45__P__45__OR__45__NOP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__4578_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN66__45__318" name="3-beta hydroxysteroid dehydrogenase/isomerase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Esi0147_0062) or (Ec-21_001850)</p>
            <p>CATEGORIES: ANNOTATION and MANUAL</p>
            <p>SUBSYSTEM: PWY66-341 , PWY66-4 , PWY-6074</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__4702_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD__45__P__45__OR__45__NOP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADH__45__P__45__OR__45__NOP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__4581_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN66__45__319" name="zymosterol 3-dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
            <p>SUBSYSTEM: PWY66-341 , PWY-6074</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__4581_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ZYMOSTEROL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN66__45__320" name="RXN66-320" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Esi0155_0043)</p>
            <p>CATEGORIES: MANUAL</p>
            <p>SUBSYSTEM: PWY66-341 , PWY66-4</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_5__45__ALPHA__45__CHOLESTA__45__724__45__DIEN__45__3__45__BETA__45__OL_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ZYMOSTEROL_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN66__45__323" name="Sterol delta-7 reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-04_004040)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY66-341 , PWY66-3</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__4187_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CHOLESTEROL_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN66__45__336" name="leukotriene-C4 gamma-glutamyl transferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_006220)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY66-375</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Amino__45__Acids__45__20_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_LEUKOTRIENE__45__C4_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_5__45__L__45__GLUTAMYL__45__L__45__AMINO__45__ACID_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD66__45__21_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN66__45__469" name="3-methyl-branched fatty acyl-CoA ligase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_003710) or (Ec-12_008720) or (Ec-01_001560) or (Ec-02_006430)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY66-387</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__Methyl__45__Saturated__45__Fatty__45__Acids_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__Methyl__45__Saturated__45__Fatty__45__Acyl__45__CoA_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN66__45__470" name="3-methyl-branched fatty acyl-CoA 2-hydroxylase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_001740) or (Ec-23_003040) or (Ec-01_011990) or (Ec-22_003660)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY66-387</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__Methyl__45__Saturated__45__Fatty__45__Acyl__45__CoA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__OH__45__3__45__Methyl__45__Saturated__45__Fatty__45__Acyl__45__CoA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SUC_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN66__45__472" name="fatty aldehyde dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY66-387</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__Me__45__Branched__45__234__45__Sat__45__FALD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_2__45__Me__45__Branched__45__234__45__Sat__45__FA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN66__45__474" name="straight chain (R)-2-hydroxy fatty acyl-CoA ligase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY66-388</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_R2OH__45__Straight__45__Chain__45__234__45__Sat__45__FA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_R2__45__2OH__45__Straight__45__Chain__45__234__45__Sat__45__FA__45__CoA_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN66__45__476" name="fatty aldehyde dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY66-388</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Odd__45__Straight__45__Chain__45__234__45__Sat__45__FALD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Odd__45__Straight__45__Chain__45__234__45__Sat__45__FA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN66__45__477" name="straight chain fatty acyl-CoA ligase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_008720) or (Ec-02_006430) or (Ec-01_001560) or (Ec-03_003710)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY66-388</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Odd__45__Straight__45__Chain__45__234__45__Sat__45__FA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Odd__45__Saturated__45__Fatty__45__Acyl__45__CoA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN66__45__479" name="RXN66-479" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY66-389</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__14926_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__14927_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN66__45__480" name="phytenoyl-CoA synthetase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_008720) or (Ec-02_006430) or (Ec-01_001560) or (Ec-03_003710)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY66-389</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__14927_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__14928_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN66__45__482" name="Trans-2-enoyl-CoA reductase, mitochondrial precursor" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-07_005200)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY66-389</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__14928_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__206_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN66__45__483" name="long chain acyl-coA synthetase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_006430) or (Ec-12_008720) or (Ec-01_001560) or (Ec-03_003710)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY66-387</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__Me__45__Branched__45__234__45__Sat__45__FA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__Me__45__Branched__45__234__45__Sat__45__Fatty__45__Acyl__45__CoA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN66__45__484" name="long chain acyl-coA synthetase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_006430) or (Ec-12_008720) or (Ec-01_001560) or (Ec-03_003710)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PRISTANATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__14675_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN66__45__542" name="proline dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-18_001350)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Ubiquinones_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PRO_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_L__45__DELTA1__45__PYRROLINE_5__45__CARBOXYLATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Ubiquinols_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN66__45__546" name="Pyrroline-5-carboxylate reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-05_006410) or (Ec-07_007360) or (Ec-03_004680) or (Ec-07_007340) or (Ec-07_007350)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PYRROLINE__45__HYDROXY__45__CARBOXYLATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_NADH__45__P__45__OR__45__NOP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NAD__45__P__45__OR__45__NOP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_4__45__HYDROXY__45__L__45__PROLINE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN66__45__548" name="RXN66-548" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ETF__45__Oxidized_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_E__45___c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="3" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ETF__45__Reduced_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN66__45__550" name="Electron transfer flavoprotein-ubiquinone oxidoreductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-23_002110)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Ubiquinones_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ETF__45__Reduced_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ETF__45__Oxidized_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Ubiquinols_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN66__45__569" name="RXN66-569" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__14053_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PHE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__5881_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_TYR_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN66__45__579" name="Myo-inositol-1-phosphate synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_005440) or (Ec-06_001090)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GLC__45__6__45__P_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_1__45__L__45__MYO__45__INOSITOL__45__1__45__P_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN66__45__81" name="N,N-dimethylaniline monooxygenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-00_002320) or (Ec-11_003800) or (Ec-06_002080) or (Ec-01_005560) or (Ec-06_000440) or (Ec-25_003590)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY66-201</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NICOTINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__2743_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN6666__45__4" name="RXN6666-4" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-15_002910) or (Ec-15_002920)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-7431 , PWY6666-2</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_DOPAMINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HYDROGEN__45__PEROXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_34__45__DIHYDROXYPHENYLACETALDEHYDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXN6666__45__9" name="P-loop containing nucleoside triphosphate hydrolase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_007310) or (Ec-06_007300) or (Ec-06_007320) or (Ec-26_003630) or (Ec-00_005410)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY6666-2</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PAPS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DOPAMINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__7649_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_3__45__5__45__ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXNARA__45__8002" name="Phytoene synthase; chloroplast precursor" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-04_002810)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6287 , PWY-6475 , PWY-5942</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__464_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__12321_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXNN__45__404" name="Amidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_009020) or (Ec-02_005910)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-581 , PWY-3161 , PWY-5025</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__237_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_INDOLE_ACETATE_AUXIN_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXNQT__45__4141" name="GDP-L-galactose/GDP-D-glucose phosphorylase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-15_001960)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-882</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GDP__45__L__45__GALACTOSE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_GDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPDQT__45__4_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXNQT__45__4142" name="RXNQT-4142" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_004120)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-882</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPDQT__45__4_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_L__45__Galactopyranose_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_RXNQT__45__4366" name="carboxylic ester hydrolase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_004830) or (Ec-16_002070) or (Ec-19_001900) or (Ec-12_006850) or (Ec-25_000250)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__6442_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__110_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_METOH_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_S__45__2__45__HYDROXY__45__ACID__45__OXIDASE__45__RXN" name="Glycolate Oxidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_004150) or (Ec-15_000450) or (Ec-23_000460)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_S__45__2__45__Hydroxyacids1_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_2__45__Oxo__45__carboxylates_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HYDROGEN__45__PEROXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_S__45__ADENMETSYN__45__RXN" name="S-Adenosyl-Methionine synthetase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_008470)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: SAM-PWY , PWY-5912 , METHIONINE-DEG1-PWY , ETHYL-PWY , PWY-5041</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_MET_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_S__45__ADENOSYLMETHIONINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_S__45__FORMYLGLUTATHIONE__45__HYDROLASE__45__RXN" name="S-formylglutathione hydrolase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-23_003760)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-1801</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__548_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_GLUTATHIONE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_FORMATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_SAICARSYN__45__RXN" name="SAICARSYN-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7234 , PWY-6124 , PWY-6123</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PHOSPHORIBOSYL__45__CARBOXY__45__AMINOIMIDAZOLE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_L__45__ASPARTATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_P__45__RIBOSYL__45__4__45__SUCCCARB__45__AMINOIMIDAZOLE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_SAMDECARB__45__RXN" name="S-adenosylmethionine decarboxylase subgroup" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-22_002520) or (Ec-27_006890)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: ARGSPECAT-PWY , PWY-6834 , BSUBPOLYAMSYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_S__45__ADENOSYLMETHIONINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_S__45__ADENOSYLMETHIONINAMINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_SEDOBISALDOL__45__RXN" name="SEDOBISALDOL-RXN" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_004980)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY0-1517 , CALVIN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ERYTHROSE__45__4P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DIHYDROXY__45__ACETONE__45__PHOSPHATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_D__45__SEDOHEPTULOSE__45__1__45__7__45__P2_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_SEDOHEPTULOSE__45__BISPHOSPHATASE__45__RXN" name="Fructose-1,6-bisphosphatase class 1/Sedoheputulose-1,7-bisphosphatase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-21_001790) or (Ec-04_004710) or (Ec-22_000360)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: CALVIN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_D__45__SEDOHEPTULOSE__45__1__45__7__45__P2_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_D__45__SEDOHEPTULOSE__45__7__45__P_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_SERINE__45____45__TRNA__45__LIGASE__45__RXN" name="Seryl-tRNA synthetase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-08_002360) or (Ec-24_004300)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: TRNA-CHARGING-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_SER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SER__45__tRNAs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Charged__45__SER__45__tRNAs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_SERINE__45__C__45__PALMITOYLTRANSFERASE__45__RXN" name="Aminotransferase, class I/classII" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-24_002690) or (Ec-11_004190)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY3DJ-12 , PWY-5129 , SPHINGOLIPID-SYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PALMITYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_DEHYDROSPHINGANINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_SERINE__45__O__45__ACETTRAN__45__RXN" name="Bacterial transferase hexapeptide repeat" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-22_002810) or (Ec-00_004310) or (Ec-24_003520) or (Ec-01_001610)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7274 , PWY-6936 , CYSTSYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ACETYL__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ACETYLSERINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_SHIKIMATE__45__5__45__DEHYDROGENASE__45__RXN" name="shikimate 3-dehydrogenase (NADP+)" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_006010)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6163</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_3__45__DEHYDRO__45__SHIKIMATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_SHIKIMATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_SHIKIMATE__45__KINASE__45__RXN" name="P-loop containing nucleoside triphosphate hydrolase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-11_000770) or (Ec-02_005600)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6163</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_SHIKIMATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SHIKIMATE__45__5P_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_SIROHEME__45__FERROCHELAT__45__RXN" name="Cobalamin (vitamin B12) biosynthesis CbiX" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_002430)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5194</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_FE__43__2_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SIROHYDROCHLORIN_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_SIROHEME_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_SPERMIDINESYN__45__RXN" name="spermidine synthase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-17_001590) or (Ec-04_002790)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: BSUBPOLYAMSYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_S__45__ADENOSYLMETHIONINAMINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PUTRESCINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_SPERMIDINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_5__45__METHYLTHIOADENOSINE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_SPERMINE__45__SYNTHASE__45__RXN" name="spermine synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-17_001590) or (Ec-04_002790)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: ARGSPECAT-PWY , POLYAMINSYN3-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_S__45__ADENOSYLMETHIONINAMINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SPERMIDINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SPERMINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_5__45__METHYLTHIOADENOSINE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_SPHINGANINE__45__1__45__PHOSPHATE__45__ALDOLASE__45__RXN" name="Pyridoxal-dependent decarboxylase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_002920)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7119</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__649_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PHOSPHORYL__45__ETHANOLAMINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PALMITALDEHYDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_SPONTPRO__45__RXN" name="SPONTPRO-RXN" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6344 , PWY-6853 , PWY-7770 , PROUT-PWY , CITRULBIO-PWY , ARG-PRO-PWY , PWY-4981 , PWY-6922 , PROSYN-PWY , PWY-3341</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_L__45__DELTA1__45__PYRROLINE_5__45__CARBOXYLATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_L__45__GLUTAMATE_GAMMA__45__SEMIALDEHYDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_SQUALENE__45__MONOOXYGENASE__45__RXN" name="squalene monooxygenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_009670)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6098 , PWY-5670</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Red__45__NADPH__45__Hemoprotein__45__Reductases_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SQUALENE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_EPOXYSQUALENE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Ox__45__NADPH__45__Hemoprotein__45__Reductases_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_STRICTOSIDINE__45__SYNTHASE__45__RXN" name="strictosidine synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-00_009940) or (Ec-14_004550)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6326 , PWY-5290</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_SECOLOGANIN__45__CPD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_TRYPTAMINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_STRICTOSIDINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_SUCCCOASYN__45__RXN" name="Succinate:CoA ligase (ADP-forming)" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_001020) or (Ec-10_000030)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: P42-PWY , PWY66-398 , PWY-6728 , PWY-5913 , PWY-7384 , P23-PWY , PWY-5538 , TCA , PWY-5392 , PWY-6969 , PWY-5537 , PWY-5690</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SUC_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_SUC__45__COA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_SUCCINATE__45____45__COA__45__LIGASE__45__GDP__45__FORMING__45__RXN" name="Succinate--CoA ligase (GDP-forming), alpha subunit" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-10_000030)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY66-398</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SUC_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GTP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SUC__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_SUCCINATE__45__DEHYDROGENASE__45__UBIQUINONE__45__RXN" name="Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-05_003640) or (Ec-27_006560) or (Ec-07_002870) or (Ec-11_000360) or (Ec-07_007310) or (Ec-21_003470)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-4302 , PWY0-1329 , PWY66-398 , PWY-6728 , PWY-561 , TCA , PWY0-1353 , PWY-7279 , PWY-5690 , PWY-3781</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_SUC_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Ubiquinones_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_FUM_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Ubiquinols_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_SULFATE__45__ADENYLYLTRANS__45__RXN" name="Sulphate adenylyltransferase catalytic domain" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_000240) or (Ec-02_000870)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: P224-PWY , DISSULFRED-PWY , SULFMETII-PWY , PWY-6683 , PWY-5278 , PWY-5340</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_SULFATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_APS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_SULFITE__45__REDUCT__45__RXN" name="SULFITE-REDUCT-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
            <p>SUBSYSTEM: SO4ASSIM-PWY , PWY-6683</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="5" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="3" constant="false"/>
          <speciesReference species="M_SO3_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="3" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="3" constant="false"/>
          <speciesReference species="M_HS_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_SULFITE__45__REDUCTASE__45__FERREDOXIN__45__RXN" name="Sulfite reductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_004340) or (Ec-02_004330)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: SULFMETII-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_SO3_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Reduced__45__ferredoxins_c" stoichiometry="6" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="8" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_HS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="3" constant="false"/>
          <speciesReference species="M_Oxidized__45__ferredoxins_c" stoichiometry="6" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_SULFOCYS__45__RXN" name="Tryptophan synthase beta subunit-like PLP-dependent enzyme" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-00_008830) or (Ec-01_012080) or (Ec-12_003100) or (Ec-01_011260)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ACETYLSERINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_S2O3_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_SULFO__45__CYSTEINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACET_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_SUPEROX__45__DISMUT__45__RXN" name="disproportionate superoxide radical into hydrogen peroxide" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-22_002450) or (Ec-04_002870) or (Ec-08_003590) or (Ec-01_007760) or (Ec-05_000630) or (Ec-25_000220) or (Ec-00_002760) or (Ec-01_003850)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: DETOX1-PWY , PWY-6854 , DETOX1-PWY-1</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_SUPER__45__OXIDE_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HYDROGEN__45__PEROXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_TAU__45__PROTEIN__45__KINASE__45__RXN" name="Protein kinase domain" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_003040)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Tau__45__proteins_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_O__45__phospho__45__tau__45__proteins_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_TCM3" name="TCM3" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_006250)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_m" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_TCP26" name="TCP26" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_006250)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_p" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_TCV3" name="TCV3" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_004150) or (Ec-19_004160) or (Ec-19_004130) or (Ec-19_004170) or (Ec-19_004180)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NITRATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NITRATE_v" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_TCX10" name="TCX10" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_006250)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_x" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_TCX8" name="PEROXISOMAL ABC TRANSPORTER 1" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-24_004170) or (Ec-27_005230) or (Ec-08_001720) or (Ec-24_004140)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ATP_x" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_THI__45__P__45__SYN__45__RXN" name="THI-P-SYN-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_006870)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-7356 , PWY-6908 , PWY-7357 , PWY-6897</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_THZ__45__P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMINO__45__HYDROXYMETHYL__45__METHYLPYRIMIDINE__45__PP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_THIAMINE__45__P_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_THIAMIN__45__PYROPHOSPHOKINASE__45__RXN" name="thiamine diphosphokinase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_002580)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6907 , PWY-6908 , PWY-6898 , PWY-7356</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_THIAMINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_THIAMINE__45__PYROPHOSPHATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_THIAZOLSYN3__45__RXN" name="4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein, putative" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_008860)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7356 , PWY-7357 , PWY-6897</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_THZ_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_THZ__45__P_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_THIOL__45__OXIDASE__45__RXN" name="thiol oxidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_005200) or (Ec-06_005300) or (Ec-14_006970)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Sulfhydryls_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__8529_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_HYDROGEN__45__PEROXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_THIOPURINE__45__S__45__METHYLTRANSFERASE__45__RXN" name="thiopurine S-methyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-09_003500) or (Ec-18_001620)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Thiopurines_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_S__45__ADENOSYLMETHIONINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADENOSYL__45__HOMO__45__CYS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Thiopurine__45__Methylethers_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_THIOREDOXIN__45__REDUCT__45__NADPH__45__RXN" name="FAD-dependent pyridine nucleotide-disulphide oxidoreductase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_004520) or (Ec-19_001510) or (Ec-02_005330)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: THIOREDOX-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Ox__45__Thioredoxin_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Red__45__Thioredoxin_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_THIOREDOXIN__45__RXN" name="THIOREDOXIN-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: THIOREDOX-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Red__45__Thioredoxin_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Acceptor_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Donor__45__H2_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Ox__45__Thioredoxin_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_THIOSULFATE__45__SULFURTRANSFERASE__45__RXN" name="thiosulfate sulfurtransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-16_003300) or (Ec-22_001610)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5350</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_HCN_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_S2O3_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_SO3_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_HSCN_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_THREDEHYD__45__RXN" name="Tryptophan synthase beta subunit-like PLP-dependent enzyme" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_001910) or (Ec-06_007490)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY66-428</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_THR_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_2__45__OXOBUTANOATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMMONIUM_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_THREONINE__45____45__TRNA__45__LIGASE__45__RXN" name="threonine--tRNA ligase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-05_005060)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: TRNA-CHARGING-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_THR_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_THR__45__tRNAs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Charged__45__THR__45__tRNAs_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_THREONINE__45__ALDOLASE__45__RXN" name="threonine aldolase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-11_002460) or (Ec-06_001610)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5436 , GLYSYN-THR-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_THR_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_GLY_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ACETALD_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_THRESYN__45__RXN" name="Threonine synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-13_002160)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: HOMOSER-THRESYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_O__45__PHOSPHO__45__L__45__HOMOSERINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_THR_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_THYMIDINE__45__TRIPHOSPHATASE__45__RXN" name="Apyrase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_001970)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_TTP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_TDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_THYMIDYLATESYN__45__RXN" name="thymidylate synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-27_004630)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-3841 , PWY-7184 , PWY-7199 , PWY-7198 , PWY-7187 , PWY0-166 , 1CMET2-PWY , PWY-7210</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_METHYLENE__45__THF__45__GLU__45__N_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DUMP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_DIHYDROFOLATE__45__GLU__45__N_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_TMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_TIGLYLCOA__45__HYDROXY__45__RXN" name="Tiglyl-CoA hydratase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-17_000320) or (Ec-14_006530) or (Ec-16_001250) or (Ec-06_001380) or (Ec-16_003560)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: ILEUDEG-PWY , PWY-5109</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_2__45__METHYL__45__3__45__HYDROXY__45__BUTYRYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__1083_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_TOCOPHEROL__45__O__45__METHYLTRANSFERASE__45__RXN" name="TOCOPHEROL-O-METHYLTRANSFERASE-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-1422</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_S__45__ADENOSYLMETHIONINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GAMA__45__TOCOPHEROL_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADENOSYL__45__HOMO__45__CYS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ALPHA__45__TOCOPHEROL_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_TRANS__45__2__45__ENOYL__45__COA__45__REDUCTASE__45__NAD__43____45__RXN__45__CPD__45__10279__47__NAD__47____47__CPD__45__14281__47__NADH__47__PROTON__46__37__46__" name="TRANS-2-ENOYL-COA-REDUCTASE-NAD+-RXN-CPD-10279/NAD//CPD-14281/NADH/PROTON.37." reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__14281_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__10279_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_TRANS__45__OCTAPRENYLTRANSTRANSFERASE__45__RXN" name="solanesyl diphosphate synthase-like protein" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-17_003520)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5805</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_DELTA3__45__ISOPENTENYL__45__PP_c" stoichiometry="7" constant="false"/>
          <speciesReference species="M_GERANYL__45__PP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_SOLANESYL__45__PYROPHOSPHATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="7" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_TRANS__45__RXN__45__218" name="TRANS-RXN-218" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="2" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_e" stoichiometry="2" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_TRANS__45__RXN0__45__277" name="NAD(P) transhydrogenase, alpha subunit" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_007000)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: NADPHOS-DEPHOS-PWY , NADPHOS-DEPHOS-PWY-1</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_e" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NAD_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_TRANS__45__RXN0__45__623" name="long chain acyl-coA synthetase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-02_006430) or (Ec-12_008720) or (Ec-01_001560) or (Ec-03_003710)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_e" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CO__45__A_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD66__45__39_e" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Saturated__45__Fatty__45__Acyl__45__CoA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_TRANSALDOL__45__RXN" name="Transaldolase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_002780) or (Ec-06_003940)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: P124-PWY , PWY-5723 , NONOXIPENT-PWY , PWY-1861 , P185-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_D__45__SEDOHEPTULOSE__45__7__45__P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GAP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_FRUCTOSE__45__6P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ERYTHROSE__45__4P_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_TRANSENOYLCOARED__45__RXN" name="Trans-2-enoyl-CoA reductase, mitochondrial precursor" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-07_005200)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_TRANS__45__D2__45__ENOYL__45__COA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Saturated__45__Fatty__45__Acyl__45__CoA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_TREHALA__45__RXN" name="Six-hairpin glycosidase-like" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-00_010170) or (Ec-22_000080)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY0-1182 , PWY0-1466</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_TREHALOSE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_GLC_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ALPHA__45__GLUCOSE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_TREHALOSE6PSYN__45__RXN" name="Trehalose 6-phosphate synthase, family GT20 / Trehalose 6-phosphate phosphatase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-22_003320) or (Ec-11_002530) or (Ec-19_005250) or (Ec-05_002680) or (Ec-24_004390) or (Ec-11_002540) or (Ec-06_003140)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: TRESYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__12575_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_D__45__glucopyranose__45__6__45__phosphate_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_UDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_TREHALOSE__45__6P_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_TREHALOSEPHOSPHA__45__RXN" name="Trehalose 6-phosphate synthase, family GT20 / Trehalose 6-phosphate phosphatase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-22_003320) or (Ec-19_005250) or (Ec-05_002680) or (Ec-08_005270) or (Ec-24_004390) or (Ec-20_003980) or (Ec-11_002540) or (Ec-06_003140)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: TRESYN-PWY , PWY-881 , TREHALOSESYN-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_TREHALOSE__45__6P_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_TREHALOSE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_TRIACYLGLYCEROL__45__LIPASE__45__RXN" name="triglyceride lipase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-11_004280) or (Ec-24_003610) or (Ec-15_000020) or (Ec-27_003400) or (Ec-23_002290) or (Ec-23_002340) or (Ec-16_003710) or (Ec-15_000230) or (Ec-21_004100) or (Ec-15_000160) or (Ec-15_000190) or (Ec-06_004240) or (Ec-11_001230) or (Ec-02_001660) or (Ec-15_000240) or (Ec-06_003310) or (Ec-23_002330) or (Ec-06_005070) or (Ec-16_000950)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: LIPAS-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Triacylglycerides_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Fatty__45__Acids_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_1__45__2__45__Diglycerides_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_TRIOSEPISOMERIZATION__45__RXN" name="triose-phosphate isomerase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_002790) or (Ec-24_000360) or (Ec-08_000500) or (Ec-23_004160)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: GLUCONEO-PWY , PWY-6142 , P185-PWY , ANAGLYCOLYSIS-PWY , P341-PWY , PWY-1042 , CALVIN-PWY , PWY-5484 , PWY66-399 , PWY-7003 , GLYCOLYSIS , PWY66-373</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GAP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_DIHYDROXY__45__ACETONE__45__PHOSPHATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_TRNA__45__GUANINE__45__N7__45____45__METHYLTRANSFERASE__45__RXN" name="tRNA (guanine-N7-)-methyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_008520) or (Ec-00_003460) or (Ec-07_001780) or (Ec-08_005590)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_S__45__ADENOSYLMETHIONINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Guanine46__45__in__45__tRNA_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_tRNA__45__Containing__45__N7__45__Methylguanine__45__46_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADENOSYL__45__HOMO__45__CYS_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_TRNA__45__PSEUDOURIDINE__45__SYNTHASE__45__I__45__RXN" name="pseudouridine synthase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-17_003530) or (Ec-28_003620) or (Ec-26_004180) or (Ec-19_003680) or (Ec-07_006750) or (Ec-27_005240) or (Ec-04_001540) or (Ec-09_003890) or (Ec-01_000690) or (Ec-22_001870) or (Ec-20_000700) or (Ec-21_005910) or (Ec-08_003150) or (Ec-14_000160) or (Ec-20_003420) or (Ec-14_001340) or (Ec-07_000310) or (Ec-14_001350) or (Ec-06_009680) or (Ec-14_001540) or (Ec-06_003220) or (Ec-01_008790) or (Ec-06_004490) or (Ec-27_004410) or (Ec-05_002890)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_tRNA__45__uridine__45__38__45__40_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_tRNA__45__pseudouridine__45__38__45__40_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_TRNA__45__URACIL__45__5__45____45__METHYLTRANSFERASE__45__RXN" name="S-adenosylmethionine-dependent tRNA (m5U54) methyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_000810)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Uracil__45__54__45__in__45__tRNA_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_S__45__ADENOSYLMETHIONINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_tRNA__45__containing__45__5Me__45__uridine54_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADENOSYL__45__HOMO__45__CYS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_TRYPSYN__45__RXN" name="Tryptophan synthase beta subunit-like PLP-dependent enzyme" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-24_002360) or (Ec-27_001950) or (Ec-17_002680) or (Ec-01_012080) or (Ec-00_008830) or (Ec-06_007490) or (Ec-24_004010) or (Ec-20_002800)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_INDOLE__45__3__45__GLYCEROL__45__P_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_SER_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_GAP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_TRP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_TRYPTOPHAN__45____45__TRNA__45__LIGASE__45__RXN" name="Tryptophan--tRNA ligase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-08_005870)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: TRNA-CHARGING-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_TRP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_TRP__45__tRNAs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Charged__45__TRP__45__tRNAs_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_TYROSINE__45____45__TRNA__45__LIGASE__45__RXN" name="Tyrosyl-tRNA synthetase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_009160) or (Ec-18_001870)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: TRNA-CHARGING-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_TYR_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_TYR__45__tRNAs_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Charged__45__TYR__45__tRNAs_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_TYROSINE__45__AMINOTRANSFERASE__45__RXN" name="TYROSINE-AMINOTRANSFERASE-RXN" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: GAP-FILLING</p>
            <p>SUBSYSTEM: PWY-5151 , PWY-7518 , PWY-5886 , PWY-5754 , PWY-7514 , TYRSYN , PWY-5048 , PWY-3581 , PWY3O-4108 , TYRFUMCAT-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_TYR_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_2__45__KETOGLUTARATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_GLT_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_P__45__HYDROXY__45__PHENYLPYRUVATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_TYROSINE__45__DECARBOXYLASE__45__RXN" name="Tyrosine Decarboxylase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-14_004250)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5474 , PWY-6802 , PWY-6133 , PWY-5254 , PWY-7297 , PWY-3581</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_TYR_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_TYRAMINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_TransportSeed_ADENOSYLCOBALAMIN" name="TransportSeed_ADENOSYLCOBALAMIN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ADENOSYLCOBALAMIN_e" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADENOSYLCOBALAMIN_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_TransportSeed_AMMONIA" name="TransportSeed_AMMONIA" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_AMMONIA_e" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMMONIA_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_TransportSeed_BIOTIN" name="TransportSeed_BIOTIN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_BIOTIN_e" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_BIOTIN_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_TransportSeed_CA__43__2" name="TransportSeed_CA+2" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CA__43__2_e" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CA__43__2_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_TransportSeed_CARBON__45__DIOXIDE" name="TransportSeed_CARBON-DIOXIDE" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CARBON__45__DIOXIDE_e" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_TransportSeed_CL__45__" name="TransportSeed_CL-" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CL__45___e" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CL__45___c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_TransportSeed_CO__43__2" name="TransportSeed_CO+2" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CO__43__2_e" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CO__43__2_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_TransportSeed_COB__45__I__45__ALAMIN" name="TransportSeed_COB-I-ALAMIN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_COB__45__I__45__ALAMIN_e" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_COB__45__I__45__ALAMIN_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_TransportSeed_CPD__45__3" name="TransportSeed_CPD-3" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__3_e" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__3_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_TransportSeed_CPD__45__315" name="TransportSeed_CPD-315" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__315_e" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__315_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_TransportSeed_CU__43__" name="TransportSeed_CU+" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CU__43___e" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CU__43___c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_TransportSeed_CU__43__2" name="TransportSeed_CU+2" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CU__43__2_e" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CU__43__2_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_TransportSeed_EDTA" name="TransportSeed_EDTA" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_EDTA_e" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_EDTA_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_TransportSeed_FE__43__2" name="TransportSeed_FE+2" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_FE__43__2_e" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_FE__43__2_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_TransportSeed_FE__43__3" name="TransportSeed_FE+3" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_FE__43__3_e" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_FE__43__3_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_TransportSeed_K__43__" name="TransportSeed_K+" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_K__43___e" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_K__43___c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_TransportSeed_Light" name="TransportSeed_Light" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Light_e" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Light_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_TransportSeed_MG__43__2" name="TransportSeed_MG+2" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_MG__43__2_e" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_MG__43__2_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_TransportSeed_MN__43__2" name="TransportSeed_MN+2" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_MN__43__2_e" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_MN__43__2_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_TransportSeed_NA__43__" name="TransportSeed_NA+" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NA__43___e" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NA__43___c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_TransportSeed_NITRATE" name="TransportSeed_NITRATE" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_NITRATE_e" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NITRATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_TransportSeed_OXYGEN__45__MOLECULE" name="TransportSeed_OXYGEN-MOLECULE" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_OXYGEN__45__MOLECULE_e" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_TransportSeed_PROTON" name="TransportSeed_PROTON" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_e" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_TransportSeed_SULFATE" name="TransportSeed_SULFATE" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_SULFATE_e" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_SULFATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_TransportSeed_THIAMINE" name="TransportSeed_THIAMINE" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_THIAMINE_e" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_THIAMINE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_TransportSeed_WATER" name="TransportSeed_WATER" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_e" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_TransportSeed_ZN__43__2" name="TransportSeed_ZN+2" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_ZN__43__2_e" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ZN__43__2_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_Transport_BIOMASS" name="Transport_BIOMASS" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_BIOMASS_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_BIOMASS_e" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_UBIQUITIN__45____45__PROTEIN__45__LIGASE__45__RXN" name="ubiquitin-protein transferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-25_002630) or (Ec-25_000510) or (Ec-14_001990) or (Ec-00_007160) or (Ec-22_002200) or (Ec-12_000320) or (Ec-25_000920) or (Ec-25_000910) or (Ec-01_008900) or (Ec-01_007490) or (Ec-26_001140) or (Ec-14_003730) or (Ec-06_002450) or (Ec-01_010570) or (Ec-27_002840) or (Ec-14_006720) or (Ec-24_003940) or (Ec-18_001830) or (Ec-25_002490) or (Ec-16_001360) or (Ec-01_009550) or (Ec-13_002660) or (Ec-09_004750) or (Ec-09_000720) or (Ec-01_001660)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7511</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Ubiquitin__45__C__45__Terminal__45__Glycine_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Ubiquitin__45__activating__45__protein__45__E1__45__L__45__cys_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_S__45__ubiquitinyl__45__UAP__45__E1__45__L__45__cysteine_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_UDP__45__GLUCURONATE__45__DECARBOXYLASE__45__RXN" name="UDP-glucuronate decarboxylase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_007350)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-4821</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_UDP__45__GLUCURONATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_UDP__45__D__45__XYLOSE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_UDPGLUCEPIM__45__RXN" name="UDP-glucose 4-epimerase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-05_006710) or (Ec-04_004180) or (Ec-04_000280)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6397 , PWY-7344 , PWY66-422 , COLANSYN-PWY , PWY-6527 , PWY-7328 , PWY-3821 , PWY-6317</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_CPD__45__12575_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CPD__45__14553_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_UDPKIN__45__RXN" name="nucleoside diphosphate kinase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-04_001140) or (Ec-11_004330) or (Ec-22_003280) or (Ec-07_000140) or (Ec-26_003930) or (Ec-03_001380) or (Ec-11_005170)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7176</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_UDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_UTP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_UDPNACETYLMURAMATEDEHYDROG__45__RXN" name="UDP-N-acetylmuramate dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_000480) or (Ec-19_003080) or (Ec-03_000110) or (Ec-21_001860) or (Ec-26_003750) or (Ec-09_002930) or (Ec-16_002060)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6387 , PWY-6386</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_UDP__45__ACETYL__45__CARBOXYVINYL__45__GLUCOSAMINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADPH_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_UDP__45__N__45__ACETYLMURAMATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_UDPREDUCT__45__RXN" name="Ribonucleoside-diphosphate reductase small chain" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-19_000440) or (Ec-06_005120) or (Ec-17_003700) or (Ec-21_002920) or (Ec-11_002180) or (Ec-06_005570) or (Ec-11_002170)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6545 , PWY-7184 , PWY0-166</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_UDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Red__45__Thioredoxin_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Ox__45__Thioredoxin_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_DUDP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_UGD__45__RXN" name="UDP-glucose 6-dehydrogenase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-04_001130)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7346</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_NAD_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_CPD__45__12575_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_NADH_c" stoichiometry="2" constant="false"/>
          <speciesReference species="M_UDP__45__GLUCURONATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="3" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_UNSPECIFIC__45__MONOOXYGENASE__45__RXN" name="Cytochrome P450" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_003280) or (Ec-21_001590) or (Ec-20_004230) or (Ec-00_001320) or (Ec-24_002150) or (Ec-10_006240) or (Ec-14_006700) or (Ec-07_001680) or (Ec-00_005820) or (Ec-01_010880) or (Ec-24_002140) or (Ec-14_006690) or (Ec-07_007260) or (Ec-00_005850)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_Red__45__NADPH__45__Hemoprotein__45__Reductases_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_RH__45__Group_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Alcohols_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_Ox__45__NADPH__45__Hemoprotein__45__Reductases_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_URACIL__45__PRIBOSYLTRANS__45__RXN" name="Uracil phosphoribosyltransferase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-03_003570)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7183</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_URACIL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PRPP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_UMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_URATE__45__OXIDASE__45__RXN" name="urate oxidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_002470)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5691</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_URATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_HYDROGEN__45__PEROXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_5__45__HYDROXYISOURATE_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_URIDINEKIN__45__RXN" name="Phosphoribulokinase/uridine kinase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_002450)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-7193</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_URIDINE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_UMP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_URKI__45__RXN" name="GTP:uridine 5&apos;-phosphotransferase" reversible="true" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-26_002450)</p>
            <p>CATEGORIES: ANNOTATION</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GTP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_URIDINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_UMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_GDP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_UROGENDECARBOX__45__RXN" name="Uroporphyrinogen decarboxylase, chloroplast precursor" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-24_000650) or (Ec-24_000620) or (Ec-01_000360)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: HEME-BIOSYNTHESIS-II , CHLOROPHYLL-SYN , PWY-5531 , PWY0-1415 , HEMESYN2-PWY , PWY-7766 , PWY-7159</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="4" constant="false"/>
          <speciesReference species="M_UROPORPHYRINOGEN__45__III_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_CARBON__45__DIOXIDE_c" stoichiometry="4" constant="false"/>
          <speciesReference species="M_COPROPORPHYRINOGEN_III_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_UROGENIIISYN__45__RXN" name="uroporphyrinogen synthase, putative chloroplast precursor" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-12_004890)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5189 , PWY-5188</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_HYDROXYMETHYLBILANE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_UROPORPHYRINOGEN__45__III_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_UROPORIIIMETHYLTRANSA__45__RXN" name="Tetrapyrrole methylase, subdomain 2" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-06_004170)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-5196 , PWY-5194 , PWY-7377 , PWY-7376</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_UROPORPHYRINOGEN__45__III_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_S__45__ADENOSYLMETHIONINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADENOSYL__45__HOMO__45__CYS_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_CPD__45__9038_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_VALINE__45____45__TRNA__45__LIGASE__45__RXN" name="Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-08_004480) or (Ec-12_005070)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: TRNA-CHARGING-PWY</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_VAL__45__tRNAs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_VAL_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Charged__45__VAL__45__tRNAs_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_AMP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_PPI_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_XANTHINE__45__OXIDASE__45__RXN" name="XANTHINE-OXIDASE-RXN" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-20_000230) or (Ec-20_000210)</p>
            <p>CATEGORIES: ORTHOLOGY</p>
            <p>SUBSYSTEM: PWY-6538 , PWY-6999</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_OXYGEN__45__MOLECULE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_XANTHINE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_HYDROGEN__45__PEROXIDE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_URATE_c" stoichiometry="1" constant="false"/>
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      </reaction>
      <reaction id="R_XMPXAN__45__RXN" name="5&apos;-nucleotidase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-05_000950) or (Ec-12_005060) or (Ec-15_000820)</p>
            <p>CATEGORIES: ANNOTATION</p>
            <p>SUBSYSTEM: PWY-6596 , PWY-5695</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_WATER_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_XANTHOSINE__45__5__45__PHOSPHATE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_Pi_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_XANTHOSINE_c" stoichiometry="1" constant="false"/>
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      </reaction>
      <reaction id="R_XYLULOKIN__45__RXN" name="xylulose kinase" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (Ec-01_002810)</p>
            <p>CATEGORIES: ORTHOLOGY and ANNOTATION</p>
            <p>SUBSYSTEM: DARABITOLUTIL-PWY , LARABITOLUTIL-PWY , XYLCAT-PWY</p>
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        </notes>
        <listOfReactants>
          <speciesReference species="M_ATP_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_D__45__XYLULOSE_c" stoichiometry="1" constant="false"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="M_PROTON_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_XYLULOSE__45__5__45__PHOSPHATE_c" stoichiometry="1" constant="false"/>
          <speciesReference species="M_ADP_c" stoichiometry="1" constant="false"/>
        </listOfProducts>
      </reaction>
      <reaction id="R_biomass_rxn" name="biomass_rxn" reversible="false" fast="false">
        <notes>
          <body xmlns="http://www.w3.org/1999/xhtml">
            <p>GENE_ASSOCIATION: (None)</p>
            <p>CATEGORIES: MANUAL</p>
          </body>
        </notes>
        <listOfReactants>
          <speciesReference species="M_GLYCOLLATE_c" stoichiometry="0.029" constant="false"/>
          <speciesReference species="M_PHE_c" stoichiometry="0.35" constant="false"/>
          <speciesReference species="M_THR_c" stoichiometry="0.65" constant="false"/>
          <speciesReference species="M_GLT_c" stoichiometry="18.85" constant="false"/>
          <speciesReference species="M_GLY_c" stoichiometry="3.8" constant="false"/>
          <speciesReference species="M_L__45__ALPHA__45__ALANINE_c" stoichiometry="26.6" constant="false"/>
          <speciesReference species="M_L__45__ORNITHINE_c" stoichiometry="0.1" constant="false"/>
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          <speciesReference species="M_CIT_c" stoichiometry="19.3055" constant="false"/>
          <speciesReference species="M_GLC_c" stoichiometry="2.7615" constant="false"/>
          <speciesReference species="M_ILE_c" stoichiometry="0.2" constant="false"/>
          <speciesReference species="M_VAL_c" stoichiometry="0.85" constant="false"/>
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          <speciesReference species="M_LYS_c" stoichiometry="0.35" constant="false"/>
          <speciesReference species="M_MANNITOL_c" stoichiometry="331.4" constant="false"/>
          <speciesReference species="M_PRO_c" stoichiometry="1.35" constant="false"/>
          <speciesReference species="M_SUC_c" stoichiometry="0.878" constant="false"/>
          <speciesReference species="M_ARG_c" stoichiometry="0.1" constant="false"/>
          <speciesReference species="M_MET_c" stoichiometry="0.3" constant="false"/>
          <speciesReference species="M_ASN_c" stoichiometry="0.75" constant="false"/>
          <speciesReference species="M_GLN_c" stoichiometry="10.7" constant="false"/>
          <speciesReference species="M_THREO__45__DS__45__ISO__45__CITRATE_c" stoichiometry="9.37" constant="false"/>
          <speciesReference species="M_HIS_c" stoichiometry="0.1" constant="false"/>
          <speciesReference species="M_TRP_c" stoichiometry="0.115" constant="false"/>
          <speciesReference species="M_TYR_c" stoichiometry="0.125" constant="false"/>
          <speciesReference species="M_LEU_c" stoichiometry="0.3" constant="false"/>
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          <speciesReference species="M_CYS_c" stoichiometry="0.3" constant="false"/>
          <speciesReference species="M_GLYCERATE_c" stoichiometry="0.123" constant="false"/>
          <speciesReference species="M_SER_c" stoichiometry="3.35" constant="false"/>
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        <listOfProducts>
          <speciesReference species="M_BIOMASS_c" stoichiometry="1" constant="false"/>
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</sbml>
