############# Model summary Number of compounds: 2205 Number of reactions: 2083 Number of genes: 5050 Ratio rxn with genes/rxns: 80.26884301488238% ############# Analyzing targets #Topological analysis Number of targets: 50 #Flux Balance Analysis CPD__45__8117_c // CPD-8117_c 107.20280664290138 positive LEU_c // LEU_c 646.0214302397729 positive DOCOSANOATE_c // DOCOSANOATE_c 99.99999999999996 positive CIT_c // CIT_c 1000.0 positive GLC_c // GLC_c 1000.0 positive CPD__45__8120_c // CPD-8120_c 97.70883114685091 positive PALMITATE_c // PALMITATE_c 142.85714285714283 positive SER_c // SER_c 1000.0 positive OLEATE__45__CPD_c // OLEATE-CPD_c 124.99999999999997 positive GLT_c // GLT_c 1000.0 positive CPD__45__12653_c // CPD-12653_c 0.0 NULL L__45__ALPHA__45__ALANINE_c // L-ALPHA-ALANINE_c 1000.0 positive LINOLENIC_ACID_c // LINOLENIC_ACID_c 0.0 NULL HIS_c // HIS_c 364.1111520620335 positive ARG_c // ARG_c 321.82016137052085 positive VAL_c // VAL_c 915.7738225841038 positive SUC_c // SUC_c 1000.0 positive PHE_c // PHE_c 435.11151093087744 positive GLUTATHIONE_c // GLUTATHIONE_c 310.11192334897225 positive THREO__45__DS__45__ISO__45__CITRATE_c // THREO-DS-ISO-CITRATE_c 1000.0 positive 5Z8Z11Z14Z17Z__45__EICOSAPENTAENOATE_c // 5Z8Z11Z14Z17Z-EICOSAPENTAENOATE_c 111.11111111111114 positive L__45__ASPARTATE_c // L-ASPARTATE_c 1000.0 positive TYR_c // TYR_c 462.63704044863715 positive LINOLEIC_ACID_c // LINOLEIC_ACID_c 116.13637386314204 positive THR_c // THR_c 1000.0 positive CPD__45__8121_c // CPD-8121_c 0.0 NULL CPD__45__9247_c // CPD-9247_c 124.9999999999828 positive CYS_c // CYS_c 548.2894048688497 positive STEARIC_ACID_c // STEARIC_ACID_c 125.00000000000003 positive HOMO__45__SER_c // HOMO-SER_c 999.9999999999999 positive LYS_c // LYS_c 529.2818038194187 positive ARACHIDONIC_ACID_c // ARACHIDONIC_ACID_c 111.1111111111111 positive TRP_c // TRP_c 272.6415629810925 positive ILE_c // ILE_c 656.9920085791347 positive GLY_c // GLY_c 1000.0 positive CPD__45__9245_c // CPD-9245_c 142.85714285714283 positive 4__45__AMINO__45__BUTYRATE_c // 4-AMINO-BUTYRATE_c 999.9939003084717 positive GLYCOLLATE_c // GLYCOLLATE_c 1000.0 positive ASN_c // ASN_c 767.0695451408646 positive MANNITOL_c // MANNITOL_c 1000.0 positive Eicosadienoates_c // Eicosadienoates_c 105.07576682855805 positive MET_c // MET_c 365.526269912561 positive L__45__ORNITHINE_c // L-ORNITHINE_c 583.9198067240368 positive PRO_c // PRO_c 937.9618444953426 positive GLYCEROL_c // GLYCEROL_c 1000.0 positive GLN_c // GLN_c 675.4696034904017 positive CPD__45__7836_c // CPD-7836_c 166.6666666666666 positive AMMONIUM_c // AMMONIUM_c 1000.0 positive GLYCERATE_c // GLYCERATE_c 1000.0 positive ARACHIDIC_ACID_c // ARACHIDIC_ACID_c 111.11111111111111 positive ############# Computing optimization Testing reaction biomass_rxn Growth rate: 3.0175015087507755 Status: optimal IN FLUXES OUT FLUXES OBJECTIVES ----------------------- ----------------- ----------------- WATER_e 734 ATP_e 212 biomass_rxn 3.02 HYDROGEN__45... 413 BIOMASS_e 3.02 AMMONIA_e 284 ADP_e 212 Pi_e 212 AMP_e 142 SULFATE_e 1.81 FVA analysis: Blocked reactions: 1441 Essential reactions: 59 SPONTPRO__45__RXN HOMOSERDEHYDROG__45__RXN IGPSYN__45__RXN Transport_biomass BRANCHED__45__CHAINAMINOTRANSFERVAL__45__RXN HOMOSERKIN__45__RXN PUTTRANSAM__45__RXN GLYOXYLATE__45__REDUCTASE__45__NADP__43____45__RXN ALDOSE__45__1__45__EPIMERASE__45__RXN 3__45__DEHYDROQUINATE__45__SYNTHASE__45__RXN PRPPSYN__45__RXN ACETOLACTREDUCTOISOM__45__RXN CHORISMATEMUT__45__RXN ExchangeSeed__45__SULFATE HISTIDPHOS__45__RXN 3__45__DEHYDROQUINATE__45__DEHYDRATASE__45__RXN THRESYN__45__RXN RXN__45__7737 IMIDPHOSDEHYD__45__RXN PRAISOM__45__RXN HISTAMINOTRANS__45__RXN CHORISMATE__45__SYNTHASE__45__RXN PYRROLINECARBREDUCT__45__RXN RXN__45__14014 biomass_rxn DIHYDROXYISOVALDEHYDRAT__45__RXN ACETOLACTSYN__45__RXN PRTRANS__45__RXN GLUTAMINESYN__45__RXN TransportSeed__45__SULFATE 2__46__5__46__1__46__19__45__RXN HISTCYCLOHYD__45__RXN SHIKIMATE__45__KINASE__45__RXN BRANCHED__45__CHAINAMINOTRANSFERILEU__45__RXN MANNPDEHYDROG__45__RXN Exchange_BIOMASS SHIKIMATE__45__5__45__DEHYDROGENASE__45__RXN GLUTAMIDOTRANS__45__RXN ADENYLOSUCCINATE__45__SYNTHASE__45__RXN IMPCYCLOHYDROLASE__45__RXN SULFATE__45__ADENYLYLTRANS__45__RXN GLYCEROL__45__KIN__45__RXN AMPSYN__45__RXN HISTPRATPHYD__45__RXN DIHYDRODIPICSYN__45__RXN ASPARTATEKIN__45__RXN MANNITOL__45__1__45__PHOSPHATASE__45__RXN PRIBFAICARPISOM__45__RXN ATPPHOSPHORIBOSYLTRANS__45__RXN RXN__45__14209 BRANCHED__45__CHAINAMINOTRANSFERLEU__45__RXN 2__45__ISOPROPYLMALATESYN__45__RXN DAHPSYN__45__RXN RIB5PISOM__45__RXN DIAMINOPIMDECARB__45__RXN DIAMINOPIMEPIM__45__RXN AICARTRANSFORM__45__RXN ASPARTATE__45__SEMIALDEHYDE__45__DEHYDROGENASE__45__RXN ANTHRANSYN__45__RXN Essential genes: 21 30/30 compounds with positive flux 0/30 compounds without flux GLYCEROL_c // GLYCEROL_c 421.05263157894734 positive GLYCOLLATE_c // GLYCOLLATE_c 1000.0 positive ILE_c // ILE_c 999.9999999997058 positive L__45__ASPARTATE_c // L-ASPARTATE_c 143.07473209998068 positive LEU_c // LEU_c 1000.0 positive PRO_c // PRO_c 694.7865514780316 positive SUC_c // SUC_c 999.9999999999997 positive ARG_c // ARG_c 1000.0000000016959 positive MET_c // MET_c 998.9971729954874 positive GLN_c // GLN_c 63.12800032620576 positive THREO__45__DS__45__ISO__45__CITRATE_c // THREO-DS-ISO-CITRATE_c 153.39939056152278 positive TYR_c // TYR_c 999.7713790748443 positive VAL_c // VAL_c 999.2608797835926 positive GLYCERATE_c // GLYCERATE_c 999.9999999999989 positive HIS_c // HIS_c 999.7822634151255 positive PHE_c // PHE_c 997.8440448646816 positive LYS_c // LYS_c 999.700700615827 positive L__45__ORNITHINE_c // L-ORNITHINE_c 999.9999999997319 positive CIT_c // CIT_c 74.45299471972397 positive TRP_c // TRP_c 999.1990879455444 positive MANNITOL_c // MANNITOL_c 3.0175015087507546 positive L__45__ALPHA__45__ALANINE_c // L-ALPHA-ALANINE_c 50.973421952438144 positive SER_c // SER_c 562.8326615374806 positive GLT_c // GLT_c 81.38668913961494 positive THR_c // THR_c 1000.0000000001307 positive 4__45__AMINO__45__BUTYRATE_c // 4-AMINO-BUTYRATE_c 1000.0000000000001 positive ASN_c // ASN_c 997.6737654244508 positive CYS_c // CYS_c 999.3136378487548 positive GLC_c // GLC_c 724.2440702516734 positive GLY_c // GLY_c 469.310893113825 positive