Difference between revisions of "HOMOCYSMETB12-RXN"

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(Created page with "Category:reaction == Reaction SUCCCOASYN-RXN == * common-name: ** succinyl-coa synthetase * ec-number: ** [http://enzyme.expasy.org/EC/6.2.1.5 ec-6.2.1.5] * direction: **...")
 
(Created page with "Category:reaction == Reaction LYSINE--TRNA-LIGASE-RXN == * common-name: ** lysine—trna ligase ** lysine-trna ligase * ec-number: ** [http://enzyme.expasy.org/EC/6.1....")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction SUCCCOASYN-RXN ==
+
== Reaction LYSINE--TRNA-LIGASE-RXN ==
 
* common-name:
 
* common-name:
−
** succinyl-coa synthetase
+
** lysine—trna ligase
 +
** lysine-trna ligase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.2.1.5 ec-6.2.1.5]
+
** [http://enzyme.expasy.org/EC/6.1.1.6 ec-6.1.1.6]
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
−
* synonymous:
 
−
** succinyl coa synthesis
 
−
** succinate thiokinase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[SUC]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[SUC-COA]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[LYS]][c] '''+''' 1 [[LYS-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-LYS-tRNAs]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* Gene: [[E_subulatus_17383]]
+
* Gene: [[E_subulatus_18715]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_00867]]
+
* Gene: [[E_subulatus_15900]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_12371]]
+
* Gene: [[E_subulatus_18716]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[E_subulatus_16816]]
−
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[E_subulatus_17382]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[E_subulatus_17381]]
+
* Gene: [[E_subulatus_18713]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_02430]]
+
* Gene: [[E_subulatus_18712]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[E_subulatus_18714]]
−
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[E_subulatus_02431]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
</div>
 
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** '''12''' reactions found over '''18''' reactions in the full pathway
+
** '''21''' reactions found over '''21''' reactions in the full pathway
−
** '''12''' reactions found over '''18''' reactions in the full pathway
 
−
** '''4''' reactions found over '''7''' reactions in the full pathway
 
−
** '''4''' reactions found over '''7''' reactions in the full pathway
 
−
** '''5''' reactions found over '''12''' reactions in the full pathway
 
−
** '''5''' reactions found over '''12''' reactions in the full pathway
 
−
** '''9''' reactions found over '''12''' reactions in the full pathway
 
−
** '''9''' reactions found over '''12''' reactions in the full pathway
 
−
** '''10''' reactions found over '''12''' reactions in the full pathway
 
−
** '''10''' reactions found over '''12''' reactions in the full pathway
 
−
** '''8''' reactions found over '''10''' reactions in the full pathway
 
−
** '''8''' reactions found over '''10''' reactions in the full pathway
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
** '''8''' reactions found over '''10''' reactions in the full pathway
 
−
** '''8''' reactions found over '''10''' reactions in the full pathway
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
</div>
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
* DB : UNIPROT
 
* DB : UNIPROT
−
* ID : O28733
+
* ID : P56126
−
{{#set: common-name=succinyl-coa synthetase}}
+
{{#set: common-name=lysine-trna ligase|lysine&mdash;trna ligase}}
−
{{#set: ec-number=ec-6.2.1.5}}
+
{{#set: ec-number=ec-6.1.1.6}}
−
{{#set: direction=reversible}}
+
{{#set: direction=left-to-right}}
−
{{#set: synonymous=succinyl coa synthesis|succinate thiokinase}}
 
 
{{#set: nb gene associated=7}}
 
{{#set: nb gene associated=7}}
−
{{#set: nb pathway associated=12}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}
+
{{#set: reconstruction source=ectocarpus_subulatus}}

Revision as of 17:59, 13 January 2021

Reaction LYSINE--TRNA-LIGASE-RXN

  • common-name:
    • lysine—trna ligase
    • lysine-trna ligase
  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

  • DB : UNIPROT
  • ID : P56126





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