Difference between revisions of "RXN-5470"
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(Created page with "Category:reaction == Reaction RXN-11482 == * common-name: ** enoylpimeloyl-[acp] methyl ester reductase * ec-number: ** [http://enzyme.expasy.org/EC/1.3.1.9 ec-1.3.1.9] *...") |
(Created page with "Category:reaction == Reaction 3-OXOACYL-ACP-SYNTH-BASE-RXN == * common-name: ** acetoacetyl-[acp] synthase ** 3-oxoacyl-[acyl-carrier-protein] synthase * ec-number: ** [ht...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction 3-OXOACYL-ACP-SYNTH-BASE-RXN == |
* common-name: | * common-name: | ||
− | ** | + | ** acetoacetyl-[acp] synthase |
+ | ** 3-oxoacyl-[acyl-carrier-protein] synthase | ||
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/1.3.1. | + | ** [http://enzyme.expasy.org/EC/2.3.1.179 ec-2.3.1.179] |
+ | ** [http://enzyme.expasy.org/EC/2.3.1.41 ec-2.3.1.41] | ||
+ | ** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85] | ||
+ | ** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86] | ||
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[ACETYL-ACP]][c] '''+''' 1 [[MALONYL-ACP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[ACP]][c] '''+''' 1 [[Acetoacetyl-ACPs]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
+ | * Gene: [[E_subulatus_13005]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[E_subulatus_08948]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
− | * Gene: [[ | + | ** Category: [[orthology]] |
+ | *** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[E_subulatus_15037]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[E_subulatus_22266]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[E_subulatus_13006]] |
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
+ | * Gene: [[E_subulatus_22265]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[E_subulatus_15038]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[E_subulatus_13004]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | </div> | ||
== Pathway(s) == | == Pathway(s) == | ||
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
− | ** ''' | + | ** '''1''' reactions found over '''2''' reactions in the full pathway |
+ | ** '''1''' reactions found over '''2''' reactions in the full pathway | ||
+ | ** '''9''' reactions found over '''9''' reactions in the full pathway | ||
+ | ** '''9''' reactions found over '''9''' reactions in the full pathway | ||
+ | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
+ | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
+ | ** '''5''' reactions found over '''2''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
− | {{#set: common-name= | + | * DB : UNIPROT |
− | {{#set: ec-number=ec-1.3.1. | + | * ID : O34340 |
+ | {{#set: common-name=acetoacetyl-[acp] synthase|3-oxoacyl-[acyl-carrier-protein] synthase}} | ||
+ | {{#set: ec-number=ec-2.3.1.179|ec-2.3.1.86|ec-2.3.1.85|ec-2.3.1.41}} | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: nb gene associated= | + | {{#set: nb gene associated=8}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=4}} |
− | {{#set: reconstruction category=annotation}} | + | {{#set: reconstruction category=annotation|orthology}} |
− | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction tool=pathwaytools|pantograph}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=ectocarpus_subulatus}} | + | {{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}} |
Revision as of 18:01, 13 January 2021
Contents
Reaction 3-OXOACYL-ACP-SYNTH-BASE-RXN
- common-name:
- acetoacetyl-[acp] synthase
- 3-oxoacyl-[acyl-carrier-protein] synthase
- ec-number:
- direction:
- left-to-right
Reaction formula
- 1 ACETYL-ACP[c] + 1 MALONYL-ACP[c] + 1 PROTON[c] => 1 ACP[c] + 1 Acetoacetyl-ACPs[c] + 1 CARBON-DIOXIDE[c]
Gene(s) associated with this reaction
- Gene: E_subulatus_13005
- Category: annotation
- Source: ectocarpus_subulatus, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: orthology
- Source: output_pantograph_a.taliana.aragem, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_a.taliana.aragem, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: E_subulatus_08948
- Category: annotation
- Source: ectocarpus_subulatus, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_a.taliana.aragem, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_a.taliana.aragem, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: E_subulatus_15037
- Category: annotation
- Source: ectocarpus_subulatus, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: E_subulatus_22266
- Category: annotation
- Source: ectocarpus_subulatus, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: E_subulatus_13006
- Category: annotation
- Source: ectocarpus_subulatus, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: E_subulatus_22265
- Category: annotation
- Source: ectocarpus_subulatus, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: E_subulatus_15038
- Category: annotation
- Source: ectocarpus_subulatus, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: E_subulatus_13004
- Category: annotation
- Source: ectocarpus_subulatus, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
Pathway(s)
- Source: ectocarpus_subulatus, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- 1 reactions found over 2 reactions in the full pathway
- 1 reactions found over 2 reactions in the full pathway
- 9 reactions found over 9 reactions in the full pathway
- 9 reactions found over 9 reactions in the full pathway
- 2 reactions found over 2 reactions in the full pathway
- 2 reactions found over 2 reactions in the full pathway
- 5 reactions found over 2 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_a.taliana.aragem; tool: pantograph; comment: n.a
- category: annotation; source: ectocarpus_subulatus; tool: pathwaytools; comment: n.a
External links
- DB : UNIPROT
- ID : O34340
- Property "Common-name" (as page type) with input value "acetoacetyl-[acp] synthase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
- Property "Common-name" (as page type) with input value "3-oxoacyl-[acyl-carrier-protein] synthase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.