Difference between revisions of "RXN-9532"

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(Created page with "Category:reaction == Reaction RXN3O-1803 == * common-name: ** 3-oxoacyl-[acyl-carrier-protein] synthase * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1.179 ec-2.3.1.179...")
 
(Created page with "Category:reaction == Reaction ORNDECARBOX-RXN == * common-name: ** ornithine decarboxylase * ec-number: ** [http://enzyme.expasy.org/EC/4.1.1.17 ec-4.1.1.17] * direction:...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN3O-1803 ==
+
== Reaction ORNDECARBOX-RXN ==
 
* common-name:
 
* common-name:
−
** 3-oxoacyl-[acyl-carrier-protein] synthase
+
** ornithine decarboxylase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.1.179 ec-2.3.1.179]
+
** [http://enzyme.expasy.org/EC/4.1.1.17 ec-4.1.1.17]
−
** [http://enzyme.expasy.org/EC/2.3.1.41 ec-2.3.1.41]
 
−
** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86]
 
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[MALONYL-ACP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Palmitoyl-ACPs]][c] '''=>''' 1 [[3-oxo-stearoyl-ACPs]][c] '''+''' 1 [[ACP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
* 1 [[L-ORNITHINE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[PUTRESCINE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* Gene: [[E_subulatus_13004]]
+
* Gene: [[E_subulatus_05377]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_13006]]
+
* Gene: [[E_subulatus_12389]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_22265]]
+
* Gene: [[E_subulatus_23646]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_08948]]
+
* Gene: [[E_subulatus_12390]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[E_subulatus_12391]]
−
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[E_subulatus_22266]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[E_subulatus_13005]]
+
* Gene: [[E_subulatus_07648]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_12392]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
</div>
 
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
** '''2''' reactions found over '''1''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
{{#set: common-name=3-oxoacyl-[acyl-carrier-protein] synthase}}
+
* DB : UNIPROT
−
{{#set: ec-number=ec-2.3.1.179|ec-2.3.1.86|ec-2.3.1.41}}
+
* ID : O15696
 +
{{#set: common-name=ornithine decarboxylase}}
 +
{{#set: ec-number=ec-4.1.1.17}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=6}}
+
{{#set: nb gene associated=7}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}
+
{{#set: reconstruction source=ectocarpus_subulatus}}

Revision as of 18:01, 13 January 2021

Reaction ORNDECARBOX-RXN

  • common-name:
    • ornithine decarboxylase
  • ec-number:
  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

    • 3 reactions found over 4 reactions in the full pathway
    • 3 reactions found over 4 reactions in the full pathway
    • 1 reactions found over 1 reactions in the full pathway
    • 1 reactions found over 1 reactions in the full pathway
    • 2 reactions found over 1 reactions in the full pathway

Reconstruction information

External links

  • DB : UNIPROT
  • ID : O15696





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