Difference between revisions of "3.5.1.98-RXN"

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(Created page with "Category:reaction == Reaction RXN-9553 == * common_name: ** 3-hydroxypetroselinoyl-[acyl-carrier protein] dehydratase * direction: ** left-to-right * ec_number: ** ec-4.2....")
 
(Created page with "Category:reaction == Reaction RXN-8660 == * common-name: ** [histone-h3]-lysine-36 demethylase * direction: ** left-to-right * synonymous: ** protein-6-n,6-n-dimethyl-l-ly...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-9553 ==
+
== Reaction RXN-8660 ==
−
* common_name:
+
* common-name:
−
** 3-hydroxypetroselinoyl-[acyl-carrier protein] dehydratase
+
** [histone-h3]-lysine-36 demethylase
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* ec_number:
+
* synonymous:
−
** ec-4.2.1
+
** protein-6-n,6-n-dimethyl-l-lysine,2-oxoglutarate:oxygen oxidoreductase
 +
** h3-k36-specific demethylase
 +
** histone demethylase
 +
** jhdm1a
 +
** jmjc domain-containing histone demethylase 1a
 +
** histone-lysine (h3-k36) demethylase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[R-3-hydroxypetroselinoyl-ACPs]][c] '''=>''' 1 [[Petrosel-2-enoyl-ACPs]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[CPD-8900]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CPD-8901]][c] '''+''' 1 [[FORMALDEHYDE]][c] '''+''' 1 [[SUC]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[E_subulatus_02373]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_06818]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_02374]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_24734]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_02372]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_14637]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_02371]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* 1 [[R-3-hydroxypetroselinoyl-ACPs]][c] '''=>''' 1 [[Petrosel-2-enoyl-ACPs]][c] '''+''' 1 [[WATER]][c]
 
−
** '''2''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[manual]]; source: [[esub_adding_annot_form]]; tool: [[curation]]; comment: annotation
+
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: common_name=3-hydroxypetroselinoyl-[acyl-carrier protein] dehydratase}}
+
{{#set: common-name=[histone-h3]-lysine-36 demethylase}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: ec_number=ec-4.2.1}}
+
{{#set: synonymous=histone-lysine (h3-k36) demethylase|jmjc domain-containing histone demethylase 1a|protein-6-n,6-n-dimethyl-l-lysine,2-oxoglutarate:oxygen oxidoreductase|histone demethylase|jhdm1a|h3-k36-specific demethylase}}
−
{{#set: nb gene associated=0}}
+
{{#set: nb gene associated=7}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=manual}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=curation}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction comment=annotation}}
+
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=esub_adding_annot_form}}
+
{{#set: reconstruction source=ectocarpus_subulatus}}

Revision as of 18:06, 13 January 2021

Reaction RXN-8660

  • common-name:
    • [histone-h3]-lysine-36 demethylase
  • direction:
    • left-to-right
  • synonymous:
    • protein-6-n,6-n-dimethyl-l-lysine,2-oxoglutarate:oxygen oxidoreductase
    • h3-k36-specific demethylase
    • histone demethylase
    • jhdm1a
    • jmjc domain-containing histone demethylase 1a
    • histone-lysine (h3-k36) demethylase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

Property "Common-name" (as page type) with input value "histone-h3]-lysine-36 demethylase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.





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