Difference between revisions of "RXN66-526"

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(Created page with "Category:reaction == Reaction TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN == * common-name: ** trna pseudouridine38-40 synthase * ec-number: ** [http://enzyme.expasy.org/EC/5.4.99.1...")
(Created page with "Category:reaction == Reaction RXN-15124 == * direction: ** left-to-right == Reaction formula == * 1 2-AMINOACRYLATE[c] '''=>''' 1 CPD-16015[c] == Gene(s) associate...")
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN ==
+
== Reaction RXN-15124 ==
* common-name:
 
** trna pseudouridine38-40 synthase
 
* ec-number:
 
** [http://enzyme.expasy.org/EC/5.4.99.12 ec-5.4.99.12]
 
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[tRNA-uridine-38-40]][c] '''=>''' 1 [[tRNA-pseudouridine-38-40]][c]
+
* 1 [[2-AMINOACRYLATE]][c] '''=>''' 1 [[CPD-16015]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* Gene: [[E_subulatus_22422]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[E_subulatus_17814]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[E_subulatus_24162]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[E_subulatus_03300]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[E_subulatus_17135]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[E_subulatus_24163]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[E_subulatus_03224]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[E_subulatus_17136]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[E_subulatus_24161]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[E_subulatus_10143]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[E_subulatus_17904]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[E_subulatus_17813]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[E_subulatus_14954]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[E_subulatus_22423]]
 
** Category: [[annotation]]
 
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[SERDEG-PWY]], L-serine degradation:
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-5497]], purine nucleobases degradation II (anaerobic):
 +
** '''10''' reactions found over '''24''' reactions in the full pathway
 +
* [[LCYSDEG-PWY]], L-cysteine degradation II:
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[TRYPDEG-PWY]], L-tryptophan degradation II (via pyruvate):
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY0-1535]], D-serine degradation:
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-3661]], glycine betaine degradation I:
 +
** '''4''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[manual]]; source: [[esub_adding_annot_form]]; tool: [[curation]]; comment: annotation
 
== External links  ==
 
== External links  ==
* DB : UNIPROT
+
* LIGAND-RXN:
* ID : Q45557
+
** [http://www.genome.jp/dbget-bin/www_bget?R11100 R11100]
{{#set: common-name=trna pseudouridine38-40 synthase}}
+
* METANETX-RXN : MNXR114400
{{#set: ec-number=ec-5.4.99.12}}
+
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=40668 40668]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: nb gene associated=14}}
+
{{#set: nb gene associated=0}}
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=6}}
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=manual}}
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=curation}}
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction comment=annotation}}
{{#set: reconstruction source=ectocarpus_subulatus}}
+
{{#set: reconstruction source=esub_adding_annot_form}}

Revision as of 15:15, 15 March 2021

Reaction RXN-15124

  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • SERDEG-PWY, L-serine degradation:
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-5497, purine nucleobases degradation II (anaerobic):
    • 10 reactions found over 24 reactions in the full pathway
  • LCYSDEG-PWY, L-cysteine degradation II:
    • 3 reactions found over 3 reactions in the full pathway
  • TRYPDEG-PWY, L-tryptophan degradation II (via pyruvate):
    • 2 reactions found over 3 reactions in the full pathway
  • PWY0-1535, D-serine degradation:
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-3661, glycine betaine degradation I:
    • 4 reactions found over 7 reactions in the full pathway

Reconstruction information

External links

  • LIGAND-RXN:
  • METANETX-RXN : MNXR114400
  • RHEA: