Difference between revisions of "RXN-7737"

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(Created page with "Category:reaction == Reaction RXN-6622 == * ec-number: ** [http://enzyme.expasy.org/EC/3.4.13.18 ec-3.4.13.18] * direction: ** left-to-right == Reaction formula == * 1 C...")
(Created page with "Category:reaction == Reaction RXN-8661 == * common-name: ** [histone-h3]-lysine-36 demethylase * ec-number: ** [http://enzyme.expasy.org/EC/1.14.11 ec-1.14.11] * direction...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-6622 ==
+
== Reaction RXN-8661 ==
 +
* common-name:
 +
** [histone-h3]-lysine-36 demethylase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.4.13.18 ec-3.4.13.18]
+
** [http://enzyme.expasy.org/EC/1.14.11 ec-1.14.11]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* synonymous:
 +
** protein-6-n,6-n-dimethyl-l-lysine,2-oxoglutarate:oxygen oxidoreductase
 +
** histone-lysine (h3-k36) demethylase
 +
** histone demethylase
 +
** jhdm1a
 +
** h3-k36-specific demethylase
 +
** jmjc domain-containing histone demethylase 1a
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CYS-GLY]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CYS]][c] '''+''' 1 [[GLY]][c]
+
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[CPD-8901]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[FORMALDEHYDE]][c] '''+''' 1 [[Protein-L-lysine]][c] '''+''' 1 [[SUC]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[E_subulatus_07550]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** Category: [[orthology]]
+
* Gene: [[E_subulatus_02374]]
−
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_06818]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_02373]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_02371]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_24734]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_14637]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[E_subulatus_02372]]
 +
** Category: [[annotation]]
 +
*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
+
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* DB : RHEA
+
* METANETX-RXN : MNXR122416
−
* ID : 28783
+
* RHEA:
−
{{#set: ec-number=ec-3.4.13.18}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10785 10785]
 +
{{#set: common-name=[histone-h3]-lysine-36 demethylase}}
 +
{{#set: ec-number=ec-1.14.11}}
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=1}}
+
{{#set: synonymous=histone demethylase|h3-k36-specific demethylase|jmjc domain-containing histone demethylase 1a|histone-lysine (h3-k36) demethylase|protein-6-n,6-n-dimethyl-l-lysine,2-oxoglutarate:oxygen oxidoreductase|jhdm1a}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb gene associated=7}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_a.taliana.aragem}}
+
{{#set: reconstruction source=ectocarpus_subulatus}}

Revision as of 15:16, 15 March 2021

Reaction RXN-8661

  • common-name:
    • [histone-h3]-lysine-36 demethylase
  • ec-number:
  • direction:
    • left-to-right
  • synonymous:
    • protein-6-n,6-n-dimethyl-l-lysine,2-oxoglutarate:oxygen oxidoreductase
    • histone-lysine (h3-k36) demethylase
    • histone demethylase
    • jhdm1a
    • h3-k36-specific demethylase
    • jmjc domain-containing histone demethylase 1a

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

  • METANETX-RXN : MNXR122416
  • RHEA:

Property "Common-name" (as page type) with input value "histone-h3]-lysine-36 demethylase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.





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