Difference between revisions of "RXN-5470"

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(Created page with "Category:reaction == Reaction 3-OXOACYL-ACP-SYNTH-BASE-RXN == * common-name: ** acetoacetyl-[acp] synthase ** 3-oxoacyl-[acyl-carrier-protein] synthase * ec-number: ** [ht...")
(Created page with "Category:reaction == Reaction RXN-17115 == * direction: ** left-to-right * ec_number: ** ec-1.1.1 == Reaction formula == * 1 CPD-18493[c] '''+''' 1 NAD[c] '''=>'''...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 3-OXOACYL-ACP-SYNTH-BASE-RXN ==
+
== Reaction RXN-17115 ==
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* common-name:
 
−
** acetoacetyl-[acp] synthase
 
−
** 3-oxoacyl-[acyl-carrier-protein] synthase
 
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* ec-number:
 
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** [http://enzyme.expasy.org/EC/2.3.1.179 ec-2.3.1.179]
 
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** [http://enzyme.expasy.org/EC/2.3.1.41 ec-2.3.1.41]
 
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** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85]
 
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** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86]
 
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* ec_number:
 +
** ec-1.1.1
 
== Reaction formula ==
 
== Reaction formula ==
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* 1 [[ACETYL-ACP]][c] '''+''' 1 [[MALONYL-ACP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[ACP]][c] '''+''' 1 [[Acetoacetyl-ACPs]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
* 1 [[CPD-18493]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[CPD-18494]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
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* Gene: [[E_subulatus_13005]]
 
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** Category: [[annotation]]
 
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*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[E_subulatus_08948]]
 
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** Category: [[annotation]]
 
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*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_a.taliana.aragem]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[E_subulatus_15037]]
 
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** Category: [[annotation]]
 
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*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[E_subulatus_22266]]
 
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** Category: [[annotation]]
 
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*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[E_subulatus_13006]]
 
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** Category: [[annotation]]
 
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*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
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* Gene: [[E_subulatus_22265]]
 
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** Category: [[annotation]]
 
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*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[E_subulatus_15038]]
 
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** Category: [[annotation]]
 
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*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[E_subulatus_13004]]
 
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** Category: [[annotation]]
 
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*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
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*** Source: [[ectocarpus_subulatus]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
* [[PWY-7726]], (4Z,7Z,10Z,13Z,16Z)-docosapentaenoate biosynthesis (6-desaturase):
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** '''1''' reactions found over '''2''' reactions in the full pathway
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** '''6''' reactions found over '''13''' reactions in the full pathway
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** '''1''' reactions found over '''2''' reactions in the full pathway
 
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** '''9''' reactions found over '''9''' reactions in the full pathway
 
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** '''9''' reactions found over '''9''' reactions in the full pathway
 
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** '''2''' reactions found over '''2''' reactions in the full pathway
 
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** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
** '''5''' reactions found over '''2''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_a.taliana.aragem]]; tool: [[pantograph]]; comment: n.a
+
* category: [[manual]]; source: [[esub_adding_annot_form]]; tool: [[curation]]; comment: annotation
−
* category: [[annotation]]; source: [[ectocarpus_subulatus]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
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* DB : UNIPROT
+
* METANETX-RXN : MNXR120667
−
* ID : O34340
 
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{{#set: common-name=acetoacetyl-[acp] synthase|3-oxoacyl-[acyl-carrier-protein] synthase}}
 
−
{{#set: ec-number=ec-2.3.1.179|ec-2.3.1.86|ec-2.3.1.85|ec-2.3.1.41}}
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=8}}
+
{{#set: ec_number=ec-1.1.1}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb gene associated=0}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: nb pathway associated=1}}
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{{#set: reconstruction tool=pathwaytools|pantograph}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction tool=curation}}
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{{#set: reconstruction source=output_pantograph_a.taliana.aragem|ectocarpus_subulatus}}
+
{{#set: reconstruction comment=annotation}}
 +
{{#set: reconstruction source=esub_adding_annot_form}}

Revision as of 15:16, 15 March 2021

Reaction RXN-17115

  • direction:
    • left-to-right
  • ec_number:
    • ec-1.1.1

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7726, (4Z,7Z,10Z,13Z,16Z)-docosapentaenoate biosynthesis (6-desaturase):
    • 6 reactions found over 13 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR120667





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